Citrus Sinensis ID: 030848

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Protein Sequence
MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG
Secondary Structure (PSIPRED)
cHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHccccccccccccccccccccEEEEEEccEEEEEEEcccccccccHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHcccccccccEEEEEccccccccccHHHHHHHccccccccccEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccHHHHHcccccccccEEEEEEEcccccHHHHHHHHcHHHHHHcccccccccccccEEEEEEEEccEEEEEEEEcccHHHHccHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHHccHHHcccEEEEEEEcccccccccHHHHHHHccHHHcccccEEEEEcccccc
Coil and Loop (DISEMBL)
MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSnveglppdrivptvglnigrievsnsklvfwdlggqpglrSIWEKYYEEAHAVVFVIdaacpsrfedSKTALEKVLRnedlqgapLLILAnkqdlpdavsADELARYLDLKKLDERVCMFEAVSGYDG
Flexible Loop (DISEMBL)
MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVysnveglppdriVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLdlkklderVCMFEAVSGYDG
Low Complexity Region (SEG)
MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG
Disordered region (IsUnstruct)
**SLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAV*****
Disordered Region (DISOPRED)
MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD*
Disordered Region (DISEMBL)
MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG
Disordered Region (DISPRO)
*FSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSG***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	170	2.2.26 [Sep-21-2011]
Q63055	201	ADP-ribosylation factor-r	yes	no	1.0	0.845	0.456	2e-39
Q8BXL7	201	ADP-ribosylation factor-r	yes	no	1.0	0.845	0.456	2e-39
Q32LJ2	201	ADP-ribosylation factor-r	yes	no	1.0	0.845	0.450	2e-39
Q5R579	201	ADP-ribosylation factor-r	yes	no	1.0	0.845	0.450	3e-39
Q13795	201	ADP-ribosylation factor-r	no	no	1.0	0.845	0.450	3e-39
Q02804	198	ADP-ribosylation factor-l	yes	no	0.976	0.838	0.375	3e-29
Q54R04	185	ADP-ribosylation factor-l	no	no	0.911	0.837	0.388	1e-26
Q06849	184	ADP-ribosylation factor-l	no	no	0.864	0.798	0.402	2e-26
Q7RVM2	185	ADP-ribosylation factor O	N/A	no	0.941	0.864	0.345	5e-26
P51643	181	ADP-ribosylation factor 1	N/A	no	0.947	0.889	0.343	5e-26

>sp|Q63055|ARFRP_RAT ADP-ribosylation factor-related protein 1 OS=Rattus norvegicus GN=Arfrp1 PE=2 SV=1

 Score =  161 bits (407), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/173 (45%), Positives = 117/173 (67%), Gaps = 3/173 (1%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
           M++L  GL+KY+F K E+ +LILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLN
Sbjct: 1   MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60

Query: 60  IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
           IG ++V  ++L+FWDLGGQ  L+S+W+KYY E H V++VID+    R  +SK A EKV+ 
Sbjct: 61  IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVS 120

Query: 120 NEDLQGAPLLILANKQDLPDAVSADEL-ARYLDLK-KLDERVCMFEAVSGYDG 170
           +E L G P+L+LANKQD+   +S  ++   + D   K+  R C+ +A S   G
Sbjct: 121 SEALDGVPILVLANKQDVETCLSIPDIKTAFSDCTCKIGRRDCLTQACSALTG 173

Possibly involved in plasma membrane-related signaling events.
Rattus norvegicus (taxid: 10116)

>sp|Q8BXL7|ARFRP_MOUSE ADP-ribosylation factor-related protein 1 OS=Mus musculus GN=Arfrp1 PE=2 SV=2

 Score =  161 bits (407), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/173 (45%), Positives = 117/173 (67%), Gaps = 3/173 (1%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
           M++L  GL+KY+F K E+ +LILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLN
Sbjct: 1   MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60

Query: 60  IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
           IG ++V  ++L+FWDLGGQ  L+S+W+KYY E H V++VID+    R  +SK A EKV+ 
Sbjct: 61  IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVS 120

Query: 120 NEDLQGAPLLILANKQDLPDAVSADEL-ARYLDLK-KLDERVCMFEAVSGYDG 170
           +E L G P+L+LANKQD+   +S  ++   + D   K+  R C+ +A S   G
Sbjct: 121 SEALDGVPILVLANKQDVETCLSIPDIKTAFSDCTCKIGRRDCLTQACSALTG 173

Possibly involved in plasma membrane-related signaling events.

Mus musculus (taxid: 10090)

>sp|Q32LJ2|ARFRP_BOVIN ADP-ribosylation factor-related protein 1 OS=Bos taurus GN=ARFRP1 PE=2 SV=1

 Score =  161 bits (407), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/173 (45%), Positives = 115/173 (66%), Gaps = 3/173 (1%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
           M++L  GL+KY+F K E+ VLILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLN
Sbjct: 1   MYTLLSGLYKYMFQKDEYCVLILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60

Query: 60  IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
           IG ++V  ++L+FWDLGGQ  L+S+W+KYY E H V++VID+    R  +SK A EK++ 
Sbjct: 61  IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKQAFEKMVT 120

Query: 120 NEDLQGAPLLILANKQDLPDAVSADELARYLD--LKKLDERVCMFEAVSGYDG 170
           +E L G P+L+LANKQD+   +S  ++         K+  R C+ +A S   G
Sbjct: 121 SEALDGVPILVLANKQDVETCLSIPDIKTAFSDCASKIGRRDCLTQACSALTG 173

Possibly involved in plasma membrane-related signaling events.

Bos taurus (taxid: 9913)

>sp|Q5R579|ARFRP_PONAB ADP-ribosylation factor-related protein 1 OS=Pongo abelii GN=ARFRP1 PE=2 SV=1

 Score =  160 bits (406), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 78/173 (45%), Positives = 115/173 (66%), Gaps = 3/173 (1%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
           M++L  GL+KY+F K E+ +LILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLN
Sbjct: 1   MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60

Query: 60  IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
           IG ++V  ++L+FWDLGGQ  L+S+W+KYY E H V++VID+    R  +SK A EKV+ 
Sbjct: 61  IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEKVVT 120

Query: 120 NEDLQGAPLLILANKQDLPDAVSADELARYLD--LKKLDERVCMFEAVSGYDG 170
           +E L G P+L+LANKQD+   +S  ++         K+  R C+ +A S   G
Sbjct: 121 SEALCGVPVLVLANKQDVETCLSIPDIKTAFSDCTSKIGRRDCLTQACSALTG 173

Possibly involved in plasma membrane-related signaling events.

Pongo abelii (taxid: 9601)

>sp|Q13795|ARFRP_HUMAN ADP-ribosylation factor-related protein 1 OS=Homo sapiens GN=ARFRP1 PE=1 SV=1

 Score =  160 bits (406), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 78/173 (45%), Positives = 115/173 (66%), Gaps = 3/173 (1%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
           M++L  GL+KY+F K E+ +LILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLN
Sbjct: 1   MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60

Query: 60  IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
           IG ++V  ++L+FWDLGGQ  L+S+W+KYY E H V++VID+    R  +SK A EKV+ 
Sbjct: 61  IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEKVVT 120

Query: 120 NEDLQGAPLLILANKQDLPDAVSADELARYLD--LKKLDERVCMFEAVSGYDG 170
           +E L G P+L+LANKQD+   +S  ++         K+  R C+ +A S   G
Sbjct: 121 SEALCGVPVLVLANKQDVETCLSIPDIKTAFSDCTSKIGRRDCLTQACSALTG 173

Possibly involved in plasma membrane-related signaling events.

Homo sapiens (taxid: 9606)

>sp|Q02804|ARL3_YEAST ADP-ribosylation factor-like protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARL3 PE=1 SV=1

 Score =  127 bits (319), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 104/173 (60%), Gaps = 7/173 (4%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
           MF L  GL+     K ++ +LILG+D AGKTT LE LK  YS +     ++I PTVG N+
Sbjct: 1   MFHLVKGLYNNWNKKEQYSILILGLDNAGKTTFLETLKKEYS-LAFKALEKIQPTVGQNV 59

Query: 61  GRIEVSNSKLV-FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
             I V + +++ FWD+GGQ  LRS+W +YY   H ++F++D++   R ++  T L+ V+ 
Sbjct: 60  ATIPVDSKQILKFWDVGGQESLRSMWSEYYSLCHGIIFIVDSSDRERLDECSTTLQSVVM 119

Query: 120 NEDLQGAPLLILANKQDLPDAVSADELARYLD-----LKKLDERVCMFEAVSG 167
           +E+++G P+L+LANKQD  D +   ++    +     +   D RV    A++G
Sbjct: 120 DEEIEGVPILMLANKQDRQDRMEVQDIKEVFNKIAEHISARDSRVLPISALTG 172

Involved in the targeting of ARL1 to the Golgi. Can bind and hydrolyze GTP.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q54R04|ARL8_DICDI ADP-ribosylation factor-like protein 8 OS=Dictyostelium discoideum GN=arl8 PE=3 SV=1

 Score =  119 bits (297), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/162 (38%), Positives = 97/162 (59%), Gaps = 7/162 (4%)

Query: 2   FSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG 61
           F      +K +F K E  + ++G+  +GKTTL+    +V SN  G   D I PT+G N+ 
Sbjct: 4   FESIINFFKSLFWKQEMELTLVGLQGSGKTTLV----NVISN-GGFIEDTI-PTIGFNMK 57

Query: 62  RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE 121
           ++   N  +  WD+GGQP  RS+WE+Y    +A+VFV+D+A   +FE SK AL+ ++   
Sbjct: 58  KVTKGNVTIKLWDIGGQPRFRSMWERYCRGVNAIVFVVDSADREKFEQSKQALQDLINKP 117

Query: 122 DLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER-VCMF 162
            L   PLL++ANK DLP++   DE+ + LDL+ +  R VC +
Sbjct: 118 PLAKIPLLVVANKNDLPNSAGVDEMIQNLDLRGIVGREVCCY 159

Dictyostelium discoideum (taxid: 44689)

>sp|Q06849|ARL2_DROME ADP-ribosylation factor-like protein 2 OS=Drosophila melanogaster GN=Arf84F PE=2 SV=2

 Score =  118 bits (296), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 88/154 (57%), Gaps = 7/154 (4%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  +L+LG+D AGKTT+L++         G P D I PT+G NI  +E +   L  WD+G
Sbjct: 16  EMRILLLGLDNAGKTTILKRFN-------GEPIDTISPTLGFNIKTLEHNGYTLNMWDVG 68

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
           GQ  LRS W  Y+E    +V+V+D+A   R E     L+ +L+ E L GA LL+L NKQD
Sbjct: 69  GQKSLRSYWRNYFESTDGLVWVVDSADRMRLESCGQELQVLLQEERLAGATLLVLCNKQD 128

Query: 137 LPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           LP A+S++E+   L L+ +     +   VS   G
Sbjct: 129 LPGALSSNEIKEILHLEDITTHHWLVAGVSAVTG 162

Does not act as an allosteric activator of the cholera toxin catalytic subunit.

Drosophila melanogaster (taxid: 7227)

>sp|Q7RVM2|ARF_NEUCR ADP-ribosylation factor OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU08340 PE=3 SV=3

 Score =  117 bits (292), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 98/171 (57%), Gaps = 11/171 (6%)

Query: 2   FSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLN 59
            S+F  L+  +F K E  +L++G+D AGKTT+L KLK   V + +         PT+G N
Sbjct: 5   LSIFGKLFDGLFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTI---------PTIGFN 55

Query: 60  IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
           +  +E  N +   WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L+++L 
Sbjct: 56  VETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVVEAREELQRMLN 115

Query: 120 NEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
            ++L+ A LL+ ANKQDLP+A++A E+   L L  L +R    +A     G
Sbjct: 116 EDELRDALLLVFANKQDLPNAMNAAEITDKLGLSSLRQRSWYIQATCATTG 166

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|P51643|ARF1_XENLA ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf1 PE=2 SV=2

 Score =  116 bits (291), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 97/172 (56%), Gaps = 11/172 (6%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGL 58
           M ++F  L+K +F K E  +L++G+D AGKTT+L KLK   + +          +PT+G 
Sbjct: 1   MGNMFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT---------TIPTIGF 51

Query: 59  NIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVL 118
           N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L ++L
Sbjct: 52  NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML 111

Query: 119 RNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
             ++L+ A LL+ ANKQDLP+A++A E+   L L  L  R    +A     G
Sbjct: 112 AEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSG 163

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
255539493	204	ADP-ribosylation factor, putative [Ricin	1.0	0.833	0.911	3e-87
363807218	187	uncharacterized protein LOC100785527 [Gl	1.0	0.909	0.888	6e-87
224120084	204	predicted protein [Populus trichocarpa]	1.0	0.833	0.9	4e-86
449446037	205	PREDICTED: ADP-ribosylation factor-relat	1.0	0.829	0.894	6e-86
449446039	202	PREDICTED: ADP-ribosylation factor-relat	1.0	0.841	0.894	1e-85
356549001	204	PREDICTED: ADP-ribosylation factor-relat	1.0	0.833	0.876	1e-85
255646406	204	unknown [Glycine max]	1.0	0.833	0.864	3e-84
224136948	204	predicted protein [Populus trichocarpa]	1.0	0.833	0.876	5e-84
359495822	205	PREDICTED: ADP-ribosylation factor-relat	1.0	0.829	0.858	2e-83
217073166	205	unknown [Medicago truncatula] gi|3884967	1.0	0.829	0.870	2e-82

>gi|255539493|ref|XP_002510811.1| ADP-ribosylation factor, putative [Ricinus communis] gi|223549926|gb|EEF51413.1| ADP-ribosylation factor, putative [Ricinus communis]

 Score =  325 bits (834), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 155/170 (91%), Positives = 166/170 (97%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
           MFSLFYGLWKY+F+KTEFHVLILGIDKAGKTTLLEKLKS+YSN+EGLPPDRIVPTVGLNI
Sbjct: 1   MFSLFYGLWKYLFSKTEFHVLILGIDKAGKTTLLEKLKSLYSNLEGLPPDRIVPTVGLNI 60

Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
           GRIEVS++KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA CPSRFEDSK+ALEKVLR+
Sbjct: 61  GRIEVSSTKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDATCPSRFEDSKSALEKVLRH 120

Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           EDLQGAPLLILANKQDLPDA +A+E+ARYLDLKKLDERV MFEAVS YDG
Sbjct: 121 EDLQGAPLLILANKQDLPDAATAEEIARYLDLKKLDERVYMFEAVSAYDG 170

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807218|ref|NP_001242354.1| uncharacterized protein LOC100785527 [Glycine max] gi|255647885|gb|ACU24401.1| unknown [Glycine max]

 Score =  325 bits (832), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 151/170 (88%), Positives = 166/170 (97%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
           MFSLFYGLWKY+F+K E HVLILGIDKAGKTTLLEK+KSVYSN+EG+PPDRI+PTVGLNI
Sbjct: 1   MFSLFYGLWKYLFSKMELHVLILGIDKAGKTTLLEKMKSVYSNIEGIPPDRIIPTVGLNI 60

Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
           GRIEV+NSKLVFWDLGGQPGLRSIWEKYYEEAHAV+FV+DA+CPSRFED+K+ALEKVLR+
Sbjct: 61  GRIEVANSKLVFWDLGGQPGLRSIWEKYYEEAHAVIFVVDASCPSRFEDAKSALEKVLRH 120

Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           EDLQGAPLLILANKQD+P+AVSADELARYLDLKKLDERV MFEAVS YDG
Sbjct: 121 EDLQGAPLLILANKQDIPEAVSADELARYLDLKKLDERVSMFEAVSAYDG 170

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120084|ref|XP_002318238.1| predicted protein [Populus trichocarpa] gi|118488882|gb|ABK96250.1| unknown [Populus trichocarpa x Populus deltoides] gi|222858911|gb|EEE96458.1| predicted protein [Populus trichocarpa]

 Score =  322 bits (825), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 153/170 (90%), Positives = 166/170 (97%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
           MFSLFYGLWKYIF+KTEFHVLILGIDKAGKTTLLEKLKSV+SN+EGLPPDRI+PTVGLNI
Sbjct: 1   MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKSVHSNLEGLPPDRIIPTVGLNI 60

Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
           GRIEV+NSKLVFWDLGGQPGLRSIWEKYYEEAHAV++VIDAACPSRFED+K+ALEKVLR+
Sbjct: 61  GRIEVANSKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSRFEDAKSALEKVLRH 120

Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           +DLQGAPLLILANKQDL DA SA+ELARYLDLKKLDERV +FEAVS YDG
Sbjct: 121 DDLQGAPLLILANKQDLTDAASAEELARYLDLKKLDERVYIFEAVSAYDG 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446037|ref|XP_004140778.1| PREDICTED: ADP-ribosylation factor-related protein 1-like isoform 1 [Cucumis sativus] gi|449520110|ref|XP_004167077.1| PREDICTED: ADP-ribosylation factor-related protein 1-like isoform 1 [Cucumis sativus]

 Score =  321 bits (823), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 152/170 (89%), Positives = 167/170 (98%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
           MFSLFYGLWKY+F+KTEFHVLILGIDKAGKTTLLEKLKS+YSN+EGL PDRIVPTVGLNI
Sbjct: 1   MFSLFYGLWKYLFSKTEFHVLILGIDKAGKTTLLEKLKSLYSNLEGLSPDRIVPTVGLNI 60

Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
           GR+EV N+KLVFWDLGGQPGLRSIWEKYYEEAHAV++VIDAACPS+FEDSK+ALEKVLR+
Sbjct: 61  GRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRH 120

Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           EDLQGAPLL+LANKQDLP+AVSA+EL+RYLDLKKLDERV MFEAVSGYDG
Sbjct: 121 EDLQGAPLLVLANKQDLPEAVSAEELSRYLDLKKLDERVYMFEAVSGYDG 170

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446039|ref|XP_004140779.1| PREDICTED: ADP-ribosylation factor-related protein 1-like isoform 2 [Cucumis sativus] gi|449520112|ref|XP_004167078.1| PREDICTED: ADP-ribosylation factor-related protein 1-like isoform 2 [Cucumis sativus]

 Score =  320 bits (820), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 152/170 (89%), Positives = 167/170 (98%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
           MFSLFYGLWKY+F+KTEFHVLILGIDKAGKTTLLEKLKS+YSN+EGL PDRIVPTVGLNI
Sbjct: 1   MFSLFYGLWKYLFSKTEFHVLILGIDKAGKTTLLEKLKSLYSNLEGLSPDRIVPTVGLNI 60

Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
           GR+EV N+KLVFWDLGGQPGLRSIWEKYYEEAHAV++VIDAACPS+FEDSK+ALEKVLR+
Sbjct: 61  GRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRH 120

Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           EDLQGAPLL+LANKQDLP+AVSA+EL+RYLDLKKLDERV MFEAVSGYDG
Sbjct: 121 EDLQGAPLLVLANKQDLPEAVSAEELSRYLDLKKLDERVYMFEAVSGYDG 170

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549001|ref|XP_003542887.1| PREDICTED: ADP-ribosylation factor-related protein 1-like [Glycine max]

 Score =  320 bits (820), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 149/170 (87%), Positives = 165/170 (97%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
           MFSLFYGLWKY+F+K E HVLILGIDKAGKTTLLEK+KSVYSN+EG+PPDRI+PTVGLNI
Sbjct: 1   MFSLFYGLWKYLFSKMELHVLILGIDKAGKTTLLEKMKSVYSNIEGIPPDRIIPTVGLNI 60

Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
           GRIEV+NSKLVFWDLGGQPGLRSIWEKYYEEAHAV+FV+DA+CPSRFED+K+ALEKVLR+
Sbjct: 61  GRIEVANSKLVFWDLGGQPGLRSIWEKYYEEAHAVIFVVDASCPSRFEDAKSALEKVLRH 120

Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           EDLQGAPLLILANKQD+P+AVSADEL +YLDLKKLDERV MFEAVS YDG
Sbjct: 121 EDLQGAPLLILANKQDIPEAVSADELPQYLDLKKLDERVFMFEAVSAYDG 170

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646406|gb|ACU23682.1| unknown [Glycine max]

 Score =  315 bits (808), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 147/170 (86%), Positives = 163/170 (95%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
           MFSLFYGLWKY+F+K E HVLILGIDKAGKTTLLEK+KSVYS++EG+PPDRI+PTVGLNI
Sbjct: 1   MFSLFYGLWKYLFSKMELHVLILGIDKAGKTTLLEKMKSVYSDIEGIPPDRIIPTVGLNI 60

Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
           GRIEV+NSKLVFWDLGGQPGLRSIWEKYYEEAHAV+FV+DA+CPSR ED+K+ALEKVLR 
Sbjct: 61  GRIEVANSKLVFWDLGGQPGLRSIWEKYYEEAHAVIFVVDASCPSRLEDAKSALEKVLRR 120

Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           EDLQGAPLLILANKQD+P+AVSADEL +YLDLKKLDERV MFEAVS YDG
Sbjct: 121 EDLQGAPLLILANKQDIPEAVSADELPQYLDLKKLDERVFMFEAVSAYDG 170

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136948|ref|XP_002322456.1| predicted protein [Populus trichocarpa] gi|222869452|gb|EEF06583.1| predicted protein [Populus trichocarpa]

 Score =  315 bits (806), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 149/170 (87%), Positives = 164/170 (96%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
           MFSLFYGLWKY+F+KTE HVLILGIDKAGKTTLLEKLKSVYSN+EGLPPDRIVPTVGLNI
Sbjct: 1   MFSLFYGLWKYMFSKTELHVLILGIDKAGKTTLLEKLKSVYSNLEGLPPDRIVPTVGLNI 60

Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
           GRIEV NSKL+FWDLGGQPGLRSIWEKYY+EAHA+++VIDAACPSRFED+K+ LEKVLR+
Sbjct: 61  GRIEVENSKLLFWDLGGQPGLRSIWEKYYDEAHALIYVIDAACPSRFEDAKSELEKVLRH 120

Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           ++LQGAPLLILANKQDLPD+VSADE+ RYLDLKKLDERV MFEAVS YDG
Sbjct: 121 DELQGAPLLILANKQDLPDSVSADEVDRYLDLKKLDERVYMFEAVSAYDG 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495822|ref|XP_002265687.2| PREDICTED: ADP-ribosylation factor-related protein 1-like [Vitis vinifera] gi|296086877|emb|CBI33044.3| unnamed protein product [Vitis vinifera]

 Score =  313 bits (801), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 146/170 (85%), Positives = 164/170 (96%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
           MFSLFYGLWKY+F+K EFHVLILGI+KAGKTTLLEKLK++YSN+EGLPPDRI+PTVGLNI
Sbjct: 1   MFSLFYGLWKYLFSKAEFHVLILGINKAGKTTLLEKLKALYSNLEGLPPDRILPTVGLNI 60

Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
           GR+E+SN+KLVFWDLGGQPGLRSIWEKYYEEAHAVV+VIDA+CPSRFEDSK+ALEK+LR+
Sbjct: 61  GRVELSNTKLVFWDLGGQPGLRSIWEKYYEEAHAVVYVIDASCPSRFEDSKSALEKILRH 120

Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           EDLQGAPLLILANKQDL DA S++E+ARYLDLKKLDERV M EAVS YDG
Sbjct: 121 EDLQGAPLLILANKQDLGDAASSEEIARYLDLKKLDERVYMVEAVSAYDG 170

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073166|gb|ACJ84942.1| unknown [Medicago truncatula] gi|388496722|gb|AFK36427.1| unknown [Medicago truncatula] gi|434856055|gb|AGB56248.1| ADP-ribosylation factor-like protein [Medicago falcata]

 Score =  310 bits (793), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 148/170 (87%), Positives = 163/170 (95%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
           MFSLFYGLW+++F+K E  VLILGIDKAGKTTLLEK+KSVY+NVEGLPPDRIVPTVGLNI
Sbjct: 1   MFSLFYGLWQFMFSKLELRVLILGIDKAGKTTLLEKIKSVYTNVEGLPPDRIVPTVGLNI 60

Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
           GRIEV+N KLVFWDLGGQ GLRSIWEKYYEEAHAVVFVIDA+CPSRFED+K+ALEKVLR+
Sbjct: 61  GRIEVANRKLVFWDLGGQLGLRSIWEKYYEEAHAVVFVIDASCPSRFEDAKSALEKVLRH 120

Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           EDL+GAPLLILANKQDLP+AVS++ELARYLDLKKLDERV MFEAVS YDG
Sbjct: 121 EDLKGAPLLILANKQDLPEAVSSEELARYLDLKKLDERVYMFEAVSAYDG 170

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
TAIR|locus:2145151	205	GB1 "GTP-binding protein 1" [A	1.0	0.829	0.841	4e-74
DICTYBASE|DDB_G0283631	216	arfrp1 "ARF-like protein" [Dic	0.864	0.680	0.517	8.4e-42
UNIPROTKB|E1C1J0	201	ARFRP1 "Uncharacterized protei	1.0	0.845	0.450	1.3e-38
ZFIN|ZDB-GENE-050227-14	201	arfrp1 "ADP-ribosylation facto	1.0	0.845	0.456	1.6e-38
FB|FBgn0030088	200	CG7039 [Drosophila melanogaste	0.858	0.73	0.517	4.3e-38
MGI|MGI:1923938	201	Arfrp1 "ADP-ribosylation facto	1.0	0.845	0.456	4.3e-38
RGD|621683	201	Arfrp1 "ADP-ribosylation facto	1.0	0.845	0.456	4.3e-38
UNIPROTKB|Q32LJ2	201	ARFRP1 "ADP-ribosylation facto	1.0	0.845	0.456	5.5e-38
UNIPROTKB|Q13795	201	ARFRP1 "ADP-ribosylation facto	1.0	0.845	0.456	1.1e-37
UNIPROTKB|J9P4D5	201	ARFRP1 "Uncharacterized protei	1.0	0.845	0.450	1.3e-36

TAIR|locus:2145151 GB1 "GTP-binding protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 143/170 (84%), Positives = 159/170 (93%)

Query:     1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
             MFSL  GLW Y+F+KTEF+VLILGIDKAGKTT LEKLK++YS  EGLP DRIVPTVGLNI
Sbjct:     1 MFSLMSGLWSYMFSKTEFNVLILGIDKAGKTTFLEKLKTIYSISEGLPHDRIVPTVGLNI 60

Query:    61 GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
             GRIEVSN+K+VFWDLGGQPGLRSIWEKYYEEAHA++++IDAACP+RFEDSK+ALEK LR+
Sbjct:    61 GRIEVSNAKIVFWDLGGQPGLRSIWEKYYEEAHALIYLIDAACPTRFEDSKSALEKALRH 120

Query:   121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
             EDLQGAPLLILANKQDL +AVSA+EL RYLDLKKLDERV MFEAVSGYDG
Sbjct:   121 EDLQGAPLLILANKQDLTNAVSAEELDRYLDLKKLDERVYMFEAVSGYDG 170

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

DICTYBASE|DDB_G0283631 arfrp1 "ARF-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 76/147 (51%), Positives = 112/147 (76%)

Query:     1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
             M+SLF GLWKY+F+K E+ +LILG+D +GKTTLLE++K+ Y+ + GLPP +IVPTVGLNI
Sbjct:     1 MYSLFVGLWKYLFSKNEYFILILGLDNSGKTTLLEQIKTKYTKIPGLPPHKIVPTVGLNI 60

Query:    61 GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
              R +  + KL++WDLGGQ  LR+IW K++ + HA+++V+D++   RF +SK  LE V+ +
Sbjct:    61 ARTQFQDIKLIYWDLGGQTQLRTIWNKFFSDVHAIIYVVDSSDKERFNESKDELEIVIND 120

Query:   121 EDLQGAPLLILANKQDLPDAVSADELA 147
               L+  PLL+  NKQDLPD+ + + L+
Sbjct:   121 SKLKDVPLLLFFNKQDLPDSETIEYLS 147

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E1C1J0 ARFRP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 78/173 (45%), Positives = 121/173 (69%)

Query:     1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
             M++L  GL+KY+F + E+ +LILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLN
Sbjct:     1 MYTLLSGLYKYMFQRDEYCILILGLDNAGKTTFLEQTKTRFNKNYKGMSLSKITTTVGLN 60

Query:    60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
             IG I+V  ++L+FWDLGGQ  L+S+W+KYY E+H V++VID+    R  +SK A EK++ 
Sbjct:    61 IGTIDVGKTRLMFWDLGGQEELQSLWDKYYAESHGVIYVIDSTDEERLSESKRAFEKMIT 120

Query:   120 NEDLQGAPLLILANKQDLPDAVSADEL-ARYLD-LKKLDERVCMFEAVSGYDG 170
             +E L+G P+L+LANKQD+   +S  ++   + D + K+ +R C+ +A S   G
Sbjct:   121 SEALEGVPILVLANKQDVETCLSIPDIKTAFSDCINKIGKRDCLTQACSALTG 173

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0007369 "gastrulation" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0034067 "protein localization to Golgi apparatus" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA

ZFIN|ZDB-GENE-050227-14 arfrp1 "ADP-ribosylation factor related protein 1" [Danio rerio (taxid:7955)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 79/173 (45%), Positives = 120/173 (69%)

Query:     1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
             M++L  GL+KY+F K E+ +LILG+D AGKTT LE+ K+ +S N +G+   +I  TVGLN
Sbjct:     1 MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQTKTRFSKNYKGMNLSKITTTVGLN 60

Query:    60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
             IG I+V  ++L+FWDLGGQ  L+S+W+KYY E+H V++VID+    R  +SK A EK++ 
Sbjct:    61 IGTIDVGKARLMFWDLGGQEELQSLWDKYYAESHGVIYVIDSTDEERLGESKNAFEKMIS 120

Query:   120 NEDLQGAPLLILANKQDLPDAVSADEL-ARYLDLK-KLDERVCMFEAVSGYDG 170
             +E L+G PLL+LANKQD+ + +S  ++   + D   K+ +R C+ +  +   G
Sbjct:   121 SEALEGVPLLVLANKQDVENCLSVPDIKTAFSDCAPKIGKRDCLVQPCAALSG 173

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

FB|FBgn0030088 CG7039 [Drosophila melanogaster (taxid:7227)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 76/147 (51%), Positives = 107/147 (72%)

Query:     1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
             M++L +G +KY+  K ++ V+ILG+D AGKTT LE  K+ ++ N +GL P +I  TVGLN
Sbjct:     1 MYTLMHGFYKYMTQKDDYCVVILGLDNAGKTTYLEAAKTTFTRNYKGLNPSKITTTVGLN 60

Query:    60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
             IG I+V   +L FWDLGGQ  L+S+W+KYY+E+H V++VID+    R E+SK   +K+++
Sbjct:    61 IGTIDVQGVRLNFWDLGGQQELQSLWDKYYQESHGVIYVIDSNDRERMEESKAIFDKMIK 120

Query:   120 NEDLQGAPLLILANKQDLPDAVSADEL 146
             NE L G PLLILANKQDLPD +   E+
Sbjct:   121 NELLSGVPLLILANKQDLPDVMGVREI 147

GO:0003924 "GTPase activity" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

MGI|MGI:1923938 Arfrp1 "ADP-ribosylation factor related protein 1" [Mus musculus (taxid:10090)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 79/173 (45%), Positives = 117/173 (67%)

Query:     1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
             M++L  GL+KY+F K E+ +LILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLN
Sbjct:     1 MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60

Query:    60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
             IG ++V  ++L+FWDLGGQ  L+S+W+KYY E H V++VID+    R  +SK A EKV+ 
Sbjct:    61 IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVS 120

Query:   120 NEDLQGAPLLILANKQDLPDAVSADEL-ARYLDLK-KLDERVCMFEAVSGYDG 170
             +E L G P+L+LANKQD+   +S  ++   + D   K+  R C+ +A S   G
Sbjct:   121 SEALDGVPILVLANKQDVETCLSIPDIKTAFSDCTCKIGRRDCLTQACSALTG 173

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=ISO

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005802 "trans-Golgi network" evidence=ISO

GO:0006184 "GTP catabolic process" evidence=ISO

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007369 "gastrulation" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0034067 "protein localization to Golgi apparatus" evidence=ISO

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO

GO:0043001 "Golgi to plasma membrane protein transport" evidence=ISO

RGD|621683 Arfrp1 "ADP-ribosylation factor related protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 79/173 (45%), Positives = 117/173 (67%)

Query:     1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
             M++L  GL+KY+F K E+ +LILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLN
Sbjct:     1 MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60

Query:    60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
             IG ++V  ++L+FWDLGGQ  L+S+W+KYY E H V++VID+    R  +SK A EKV+ 
Sbjct:    61 IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVS 120

Query:   120 NEDLQGAPLLILANKQDLPDAVSADEL-ARYLDLK-KLDERVCMFEAVSGYDG 170
             +E L G P+L+LANKQD+   +S  ++   + D   K+  R C+ +A S   G
Sbjct:   121 SEALDGVPILVLANKQDVETCLSIPDIKTAFSDCTCKIGRRDCLTQACSALTG 173

GO:0005525 "GTP binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0005802 "trans-Golgi network" evidence=ISO

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007369 "gastrulation" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0034067 "protein localization to Golgi apparatus" evidence=ISO

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO

GO:0043001 "Golgi to plasma membrane protein transport" evidence=ISO

UNIPROTKB|Q32LJ2 ARFRP1 "ADP-ribosylation factor-related protein 1" [Bos taurus (taxid:9913)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 79/173 (45%), Positives = 117/173 (67%)

Query:     1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
             M++L  GL+KY+F K E+ VLILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLN
Sbjct:     1 MYTLLSGLYKYMFQKDEYCVLILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60

Query:    60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
             IG ++V  ++L+FWDLGGQ  L+S+W+KYY E H V++VID+    R  +SK A EK++ 
Sbjct:    61 IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKQAFEKMVT 120

Query:   120 NEDLQGAPLLILANKQDLPDAVSADEL-ARYLDL-KKLDERVCMFEAVSGYDG 170
             +E L G P+L+LANKQD+   +S  ++   + D   K+  R C+ +A S   G
Sbjct:   121 SEALDGVPILVLANKQDVETCLSIPDIKTAFSDCASKIGRRDCLTQACSALTG 173

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0034067 "protein localization to Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007369 "gastrulation" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|Q13795 ARFRP1 "ADP-ribosylation factor-related protein 1" [Homo sapiens (taxid:9606)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 79/173 (45%), Positives = 117/173 (67%)

Query:     1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
             M++L  GL+KY+F K E+ +LILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLN
Sbjct:     1 MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60

Query:    60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
             IG ++V  ++L+FWDLGGQ  L+S+W+KYY E H V++VID+    R  +SK A EKV+ 
Sbjct:    61 IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEKVVT 120

Query:   120 NEDLQGAPLLILANKQDLPDAVSADEL-ARYLDL-KKLDERVCMFEAVSGYDG 170
             +E L G P+L+LANKQD+   +S  ++   + D   K+  R C+ +A S   G
Sbjct:   121 SEALCGVPVLVLANKQDVETCLSIPDIKTAFSDCTSKIGRRDCLTQACSALTG 173

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007369 "gastrulation" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0034067 "protein localization to Golgi apparatus" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IMP

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0003924 "GTPase activity" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=TAS

UNIPROTKB|J9P4D5 ARFRP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 78/173 (45%), Positives = 114/173 (65%)

Query:     1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLN 59
             M++L  GL+KY+F K E+ VLILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLN
Sbjct:     1 MYTLLSGLYKYMFQKDEYCVLILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60

Query:    60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
             I  +EV    L+FW+LGGQ  L+S+W+KYY E H V++VID+    R  +SK A EK++ 
Sbjct:    61 IRTVEVGKGPLMFWELGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKRAFEKMVT 120

Query:   120 NEDLQGAPLLILANKQDLPDAVSADEL-ARYLDL-KKLDERVCMFEAVSGYDG 170
             +E L G P+L+LANKQD+   +S  ++   + D   K+  R C+ +A S   G
Sbjct:   121 SEALDGVPILVLANKQDVETCLSIPDIKTAFSDCTSKIGRRDCLTQACSALTG 173

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Y7Z2	ARF6_SCHPO	No assigned EC number	0.3567	0.9470	0.875	yes	no
Q63055	ARFRP_RAT	No assigned EC number	0.4566	1.0	0.8457	yes	no
Q02804	ARL3_YEAST	No assigned EC number	0.3757	0.9764	0.8383	yes	no
Q5R579	ARFRP_PONAB	No assigned EC number	0.4508	1.0	0.8457	yes	no
Q8BXL7	ARFRP_MOUSE	No assigned EC number	0.4566	1.0	0.8457	yes	no
Q32LJ2	ARFRP_BOVIN	No assigned EC number	0.4508	1.0	0.8457	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	170
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	2e-83
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	4e-56
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	2e-48
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	3e-45
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	2e-44
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	5e-43
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	2e-40
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	2e-39
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	7e-39
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	6e-38
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	3e-37
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	2e-36
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	8e-36
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	1e-35
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	3e-35
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	2e-34
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	3e-34
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	1e-31
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	7e-31
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	9e-31
smart00178	184	smart00178, SAR, Sar1p-like members of the Ras-fam	8e-27
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	3e-21
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	5e-17
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	5e-15
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	3e-14
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	9e-14
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	3e-10
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	2e-09
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	3e-09
cd04105	202	cd04105, SR_beta, Signal recognition particle rece	5e-09
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	7e-09
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	8e-08
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	3e-07
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	5e-07
pfam00071	162	pfam00071, Ras, Ras family	6e-07
pfam00503	329	pfam00503, G-alpha, G-protein alpha subunit	1e-06
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	2e-06
pfam08477	116	pfam08477, Miro, Miro-like protein	3e-06
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	3e-06
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	5e-06
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	6e-06
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	9e-06
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	1e-05
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	2e-05
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	2e-05
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	3e-05
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	5e-05
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	1e-04
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	1e-04
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	1e-04
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	1e-04
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	2e-04
cd09912	180	cd09912, DLP_2, Dynamin-like protein including dyn	3e-04
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	3e-04
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	3e-04
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	5e-04
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	5e-04
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	6e-04
cd00880	161	cd00880, Era_like, E	7e-04
TIGR02729	329	TIGR02729, Obg_CgtA, Obg family GTPase CgtA	7e-04
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	7e-04
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	7e-04
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	0.001
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	0.001
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	0.001
smart00275	342	smart00275, G_alpha, G protein alpha subunit	0.002
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	0.002
pfam09439	181	pfam09439, SRPRB, Signal recognition particle rece	0.004

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score =  242 bits (620), Expect = 2e-83
 Identities = 85/154 (55%), Positives = 111/154 (72%), Gaps = 3/154 (1%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78
           VLILG+D AGKTT LE+ K+ +S N +GL P +I PTVGLNIG IEV  ++L+FWDLGGQ
Sbjct: 2   VLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLNIGTIEVGKARLMFWDLGGQ 61

Query: 79  PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138
             LRS+W+KYY E+H V++VID+    RF +SK+A EKV+ NE L+G PLL+LANKQDLP
Sbjct: 62  EELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANKQDLP 121

Query: 139 DAVSADELARYLDLK--KLDERVCMFEAVSGYDG 170
           DA+S  E+    D     +  R C+ + VS  +G
Sbjct: 122 DALSVAEIKEVFDDCIALIGRRDCLVQPVSALEG 155

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score =  173 bits (440), Expect = 4e-56
 Identities = 63/152 (41%), Positives = 90/152 (59%), Gaps = 7/152 (4%)

Query: 19  HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78
            +L+LG+D AGKTT+L KLK              +PT+G N+  +E  N K   WD+GGQ
Sbjct: 1   RILMLGLDGAGKTTILYKLK-------LGEVVTTIPTIGFNVETVEYKNVKFTVWDVGGQ 53

Query: 79  PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138
             +R +W+ YYE    ++FV+D++   R E++K  L K+L  E+L+GAPLLILANKQDLP
Sbjct: 54  DKIRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLP 113

Query: 139 DAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
            A++  EL   L L+ +  R    +  S   G
Sbjct: 114 GALTESELIELLGLESIKGRRWHIQPCSAVTG 145

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score =  153 bits (390), Expect = 2e-48
 Identities = 68/157 (43%), Positives = 90/157 (57%), Gaps = 16/157 (10%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV---PTVGLNIGRIEVSNSKLVFW 73
           E  +LILG+D AGKTT+L KLK             IV   PT+G N+  +   N K   W
Sbjct: 14  EMRILILGLDNAGKTTILYKLK----------LGEIVTTIPTIGFNVETVTYKNVKFTVW 63

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D+GGQ  LR +W  Y+    AV+FV+D+A   R E++K  L  +L  E+L  APLLILAN
Sbjct: 64  DVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILAN 123

Query: 134 KQDLPDAVSADELARYLDLKKLDER---VCMFEAVSG 167
           KQDLP A+S  E+   L L +L +R   +    AV+G
Sbjct: 124 KQDLPGAMSEAEIRELLGLHELKDRPWEIQGCSAVTG 160

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score =  145 bits (369), Expect = 3e-45
 Identities = 62/158 (39%), Positives = 87/158 (55%), Gaps = 11/158 (6%)

Query: 3   SLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEK--LKSVYSNVEGLPPDRIVPTVGLNI 60
            LF  LW   F + E+ V+I+G+D AGKTT+L +  L  V             PT+G N+
Sbjct: 1   LLFSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTS---------PTIGSNV 51

Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
             I   N + + WD+GGQ  LRS W  YY    AV+ VID+    R   +K  L K+L +
Sbjct: 52  EEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAH 111

Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 158
           EDL+ A LL+LANKQDL  A++  E++  L L  + + 
Sbjct: 112 EDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDH 149

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score =  144 bits (365), Expect = 2e-44
 Identities = 61/158 (38%), Positives = 91/158 (57%), Gaps = 7/158 (4%)

Query: 13  FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF 72
            ++ E  +L+LG+D AGKTT+L++L S     E +    I PT G NI  ++    KL  
Sbjct: 11  SSRQEVRILLLGLDNAGKTTILKQLAS-----EDISH--ITPTQGFNIKNVQADGFKLNV 63

Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
           WD+GGQ  +R  W  Y+E    +++VID+A   RFE++   L ++L  E L G P+L+ A
Sbjct: 64  WDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFA 123

Query: 133 NKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           NKQDL  A  A+E+A  L+L  + +R    +A S   G
Sbjct: 124 NKQDLLTAAPAEEVAEALNLHDIRDRSWHIQACSAKTG 161

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score =  140 bits (355), Expect = 5e-43
 Identities = 64/154 (41%), Positives = 88/154 (57%), Gaps = 7/154 (4%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  +L+LG+D AGKTT+L+K         G     I PT+G NI  +E +  KL  WD+G
Sbjct: 14  EMRILMLGLDNAGKTTILKKFN-------GEDISTISPTLGFNIKTLEYNGYKLNIWDVG 66

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
           GQ  LRS W  Y+E   A+++V+D++  +R ED K  L+K+L  E L GA LLI ANKQD
Sbjct: 67  GQKSLRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLIFANKQD 126

Query: 137 LPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           LP A+S +E+   L+L  +          S   G
Sbjct: 127 LPGALSPEEIREVLELDSIKSHHWRIFGCSAVTG 160

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score =  133 bits (336), Expect = 2e-40
 Identities = 55/138 (39%), Positives = 90/138 (65%), Gaps = 8/138 (5%)

Query: 19  HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGG 77
            VL+LG+D AGK+TLL KLK              +PTVG N+  +++  +  L  WD+GG
Sbjct: 1   QVLLLGLDSAGKSTLLYKLK-------HAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGG 53

Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
           Q  +R++W+ Y E    +V+V+D++  +R ++S+  L+ +L+NE ++G P+++LANKQDL
Sbjct: 54  QEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDL 113

Query: 138 PDAVSADELARYLDLKKL 155
           P A++A+E+ R   LKK 
Sbjct: 114 PGALTAEEITRRFKLKKY 131

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score =  132 bits (333), Expect = 2e-39
 Identities = 61/162 (37%), Positives = 86/162 (53%), Gaps = 14/162 (8%)

Query: 1   MFSLFYGLWKYI-FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI---VPTV 56
           +F  FY +   +   K E  ++ LG+D AGKTTLL  LK           DR+   VPT+
Sbjct: 2   IFDWFYNVLSSLGLYKKEAKIVFLGLDNAGKTTLLHMLKD----------DRLAQHVPTL 51

Query: 57  GLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEK 116
                 + + N K   +DLGG    R +W+ Y+ E   +VF++DAA P RF++SK  L+ 
Sbjct: 52  HPTSEELTIGNVKFTTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDS 111

Query: 117 VLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 158
           +L +E+L   P+LIL NK D P AVS +EL   L L      
Sbjct: 112 LLNDEELANVPILILGNKIDKPGAVSEEELREALGLYGTTTG 153

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score =  130 bits (328), Expect = 7e-39
 Identities = 59/153 (38%), Positives = 92/153 (60%), Gaps = 11/153 (7%)

Query: 8   LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEV 65
            +K +F K E  +L++G+D AGKTT+L KLK   V + +         PT+G N+  +E 
Sbjct: 8   AFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTI---------PTIGFNVETVEY 58

Query: 66  SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
            N K   WD+GGQ  LR +W  YY+  + ++FV+D+    R  D++  LE++L  ++L+ 
Sbjct: 59  KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRD 118

Query: 126 APLLILANKQDLPDAVSADELARYLDLKKLDER 158
           A LL+ ANKQDLP+A+S  E+   L L  + +R
Sbjct: 119 AVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQR 151

Length = 182

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score =  127 bits (320), Expect = 6e-38
 Identities = 57/142 (40%), Positives = 84/142 (59%), Gaps = 7/142 (4%)

Query: 22  ILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81
           ++G+  +GKTTL+  + S          D I PTVG N+ ++   N  +  WDLGGQP  
Sbjct: 4   LVGLQNSGKTTLVNVIAS-----GQFSEDTI-PTVGFNMRKVTKGNVTIKVWDLGGQPRF 57

Query: 82  RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV 141
           RS+WE+Y    +A+V+V+DAA   + E +K  L  +L    L+G PLL+L NK DLP A+
Sbjct: 58  RSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL 117

Query: 142 SADELARYLDLKKLDER-VCMF 162
           S DEL   ++LK + +R V  +
Sbjct: 118 SVDELIEQMNLKSITDREVSCY 139

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score =  125 bits (316), Expect = 3e-37
 Identities = 54/147 (36%), Positives = 86/147 (58%), Gaps = 7/147 (4%)

Query: 12  IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLV 71
           +F   E  +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N K  
Sbjct: 4   LFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTT-------IPTVGFNVETVTYKNVKFN 56

Query: 72  FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131
            WD+GGQ  +R +W  YY     ++FV+D+A   R ++++  L +++ + +++ A LL+ 
Sbjct: 57  VWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVF 116

Query: 132 ANKQDLPDAVSADELARYLDLKKLDER 158
           ANKQDLPDA+   E+   L L ++ +R
Sbjct: 117 ANKQDLPDAMKPHEIQEKLGLTRIRDR 143

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score =  123 bits (310), Expect = 2e-36
 Identities = 51/154 (33%), Positives = 87/154 (56%), Gaps = 10/154 (6%)

Query: 19  HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78
           ++L+LG+D +GKTT++ +LK             IVPTVG N+   +  N     +D+ GQ
Sbjct: 1   NILVLGLDNSGKTTIINQLKP-----SNAQSQNIVPTVGFNVESFKKGNLSFTAFDMSGQ 55

Query: 79  PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA--PLLILANKQD 136
              R +WE YY+    ++FVID++   R   +K  LE +L + D++    P+L  ANK D
Sbjct: 56  GKYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKMD 115

Query: 137 LPDAVSADELARYLDLKKLDER---VCMFEAVSG 167
           LPDA++A ++ + L L+ + ++   +    A++G
Sbjct: 116 LPDALTAVKITQLLCLENIKDKPWHIFASSALTG 149

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score =  122 bits (308), Expect = 8e-36
 Identities = 61/144 (42%), Positives = 90/144 (62%), Gaps = 14/144 (9%)

Query: 18  FHVLILGIDKAGKTTLLEKLK-SVYSNVEGLPPDRIVPTVGLNIGRIEVS--NSKLV--- 71
            H+++LG+D AGKTT+L +LK + + N         VPT G N  +I+VS  N+K V   
Sbjct: 4   LHIVMLGLDSAGKTTVLYRLKFNEFVNT--------VPTKGFNTEKIKVSLGNAKGVTFH 55

Query: 72  FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131
           FWD+GGQ  LR +W+ Y      +VFV+D+    R E++KT L K+ +  + QG P+L+L
Sbjct: 56  FWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVL 115

Query: 132 ANKQDLPDAVSADELARYLDLKKL 155
           ANKQDLP+A+   E+ + L L +L
Sbjct: 116 ANKQDLPNALPVSEVEKLLALHEL 139

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score =  121 bits (305), Expect = 1e-35
 Identities = 56/141 (39%), Positives = 82/141 (58%), Gaps = 11/141 (7%)

Query: 20  VLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
           +LILG+D AGKTT+L +L+   V + +         PT+G N+  +   N K   WDLGG
Sbjct: 2   ILILGLDGAGKTTILYRLQVGEVVTTI---------PTIGFNVETVTYKNLKFQVWDLGG 52

Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
           Q  +R  W  YY    A+++V+D+    R   SK+ L  +L  E+L+ A LL+ ANKQD+
Sbjct: 53  QTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVFANKQDM 112

Query: 138 PDAVSADELARYLDLKKLDER 158
           P A+S  E+A  L L +L +R
Sbjct: 113 PGALSEAEVAEKLGLSELKDR 133

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score =  120 bits (303), Expect = 3e-35
 Identities = 54/154 (35%), Positives = 88/154 (57%), Gaps = 13/154 (8%)

Query: 8   LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK---SVYSNVEGLPPDRIVPTVGLNIGRIE 64
           L+  +F   E  +L++G+D AGKTT+L KLK   SV +          +PT+G N+  + 
Sbjct: 4   LFSKLFGNKEMRILMVGLDAAGKTTILYKLKLGESVTT----------IPTIGFNVETVT 53

Query: 65  VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQ 124
             N     WD+GGQ  +R +W  YY     ++FV+D+    R ++++  L ++L  ++L+
Sbjct: 54  YKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELR 113

Query: 125 GAPLLILANKQDLPDAVSADELARYLDLKKLDER 158
            A +L+ ANKQDLPDA+ A E+   L L  + +R
Sbjct: 114 DAVILVFANKQDLPDAMKAAEITEKLGLHSIRDR 147

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score =  118 bits (297), Expect = 2e-34
 Identities = 51/141 (36%), Positives = 84/141 (59%), Gaps = 11/141 (7%)

Query: 20  VLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
           +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+GG
Sbjct: 3   ILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDVGG 53

Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
           Q  +R +W  Y++    ++FV+D+    R  +++  L+++L  ++L+ A LL+ ANKQDL
Sbjct: 54  QDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDL 113

Query: 138 PDAVSADELARYLDLKKLDER 158
           P+A+SA E+   L L  L  R
Sbjct: 114 PNAMSAAEVTDKLGLHSLRNR 134

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score =  118 bits (297), Expect = 3e-34
 Identities = 56/160 (35%), Positives = 92/160 (57%), Gaps = 11/160 (6%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGL 58
           M   F  L+  +F K E  +L++G+D AGKTT+L KLK   + + +         PT+G 
Sbjct: 1   MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGF 51

Query: 59  NIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVL 118
           N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L ++L
Sbjct: 52  NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRML 111

Query: 119 RNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 158
             ++L+ A LL+ ANKQDLP+A++A E+   L L  L +R
Sbjct: 112 NEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 151

Length = 181

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score =  111 bits (280), Expect = 1e-31
 Identities = 52/143 (36%), Positives = 85/143 (59%), Gaps = 8/143 (5%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
           +L +G+D AGKTTL+  L       +G  P ++ PTVG    ++ +   ++  +DLGG  
Sbjct: 2   LLTVGLDNAGKTTLVSAL-------QGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGA 54

Query: 80  GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139
             R IW  YY EAH +VFV+D++   R ++ K  L ++L++  + G P+L+LANKQD  +
Sbjct: 55  NFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKN 114

Query: 140 AVSADELARYLDLKKL-DERVCM 161
           A+   ++  YL L+KL +E   +
Sbjct: 115 ALLGADVIEYLSLEKLVNENKSL 137

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score =  109 bits (273), Expect = 7e-31
 Identities = 59/136 (43%), Positives = 84/136 (61%), Gaps = 7/136 (5%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
           V+ LG+D AGKTT+L KLK      E + P   +PT+G N+  +E  N K   WD+GG+ 
Sbjct: 2   VVTLGLDGAGKTTILFKLK----QDEFMQP---IPTIGFNVETVEYKNLKFTIWDVGGKH 54

Query: 80  GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139
            LR +W+ YY    AVVFVID++   R  ++ + L K+L  ++L+ A LLI ANKQD+  
Sbjct: 55  KLRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 114

Query: 140 AVSADELARYLDLKKL 155
           A+S +E+   L L KL
Sbjct: 115 ALSVEEMTELLSLHKL 130

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score =  109 bits (273), Expect = 9e-31
 Identities = 48/139 (34%), Positives = 79/139 (56%), Gaps = 10/139 (7%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
           +L+LG+D AGKT+LL  L S          + +VPT G N   I   ++ +   ++GG  
Sbjct: 2   ILVLGLDGAGKTSLLHSLSS------ERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQ 55

Query: 80  GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE-DLQGAPLLILANKQDLP 138
            LR  W++Y   +  ++FV+D+A   R   ++  L ++L++  DL   PL++LANKQDLP
Sbjct: 56  NLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDL---PLVVLANKQDLP 112

Query: 139 DAVSADELARYLDLKKLDE 157
            A S  E+ + L+L+ +  
Sbjct: 113 AARSVQEIHKELELEPIAR 131

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases

 Score = 99.2 bits (247), Expect = 8e-27
 Identities = 56/149 (37%), Positives = 76/149 (51%), Gaps = 18/149 (12%)

Query: 7   GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV---PTVGLNIGRI 63
           GLW          +L LG+D AGKTTLL  LK+          DR+    PT       +
Sbjct: 12  GLWN-----KHAKILFLGLDNAGKTTLLHMLKN----------DRLAQHQPTQHPTSEEL 56

Query: 64  EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL 123
            + N K   +DLGG    R +W+ Y+ E + +V+++DA    RF +SK  L+ +L +E+L
Sbjct: 57  AIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEEL 116

Query: 124 QGAPLLILANKQDLPDAVSADELARYLDL 152
              P LIL NK D P A S DEL   L L
Sbjct: 117 ATVPFLILGNKIDAPYAASEDELRYALGL 145

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 85.8 bits (212), Expect = 3e-21
 Identities = 41/134 (30%), Positives = 58/134 (43%), Gaps = 2/134 (1%)

Query: 13  FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF 72
               EF +++LG    GKTTLL +L       EG PP          I      N KL  
Sbjct: 1   LFMKEFKIVVLGDGGVGKTTLLNRLVG-DEFPEGYPPTIGNLDPAKTI-EPYRRNIKLQL 58

Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
           WD  GQ   RS+  +YY  A+ ++ V D+      ++      + LR       P+L++ 
Sbjct: 59  WDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVG 118

Query: 133 NKQDLPDAVSADEL 146
           NK DL D  S+ E 
Sbjct: 119 NKIDLFDEQSSSEE 132

Length = 219

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 73.3 bits (180), Expect = 5e-17
 Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 14/156 (8%)

Query: 21  LILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS--KLVFWDLGGQ 78
           +++G    GK++LL  L  +   V G   D    T   ++   E+     KLV  D  G 
Sbjct: 1   VVVGRGGVGKSSLLNAL--LGGEV-GEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGL 57

Query: 79  -----PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
                 G   +       A  ++ V+D+      ED   A   +LR    +G P++++ N
Sbjct: 58  DEFGGLGREELARLLLRGADLILLVVDSTDRESEED---AKLLILRRLRKEGIPIILVGN 114

Query: 134 KQDLPDAVSADELARYLDLKK-LDERVCMFEAVSGY 168
           K DL +    +EL R  +L K L   V    A +G 
Sbjct: 115 KIDLLEEREVEELLRLEELAKILGVPVFEVSAKTGE 150

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 68.2 bits (167), Expect = 5e-15
 Identities = 34/130 (26%), Positives = 49/130 (37%), Gaps = 12/130 (9%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVY-SNVEGLPPDRIVPTVGLNI--GRIEVSNSKLVF- 72
           E  ++I+G    GK+TLL +L     S  E        P    N     IE       F 
Sbjct: 1   EIKIVIVGDPNVGKSTLLNRLLGNKISITEY------KPGTTRNYVTTVIEEDGKTYKFN 54

Query: 73  -WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP-SRFEDSKTALEKVLRNEDLQGAPLLI 130
             D  GQ    +I   YY    + + V D        E+      K + +    G P+++
Sbjct: 55  LLDTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIIL 114

Query: 131 LANKQDLPDA 140
           + NK DL DA
Sbjct: 115 VGNKIDLRDA 124

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 66.7 bits (163), Expect = 3e-14
 Identities = 37/159 (23%), Positives = 69/159 (43%), Gaps = 19/159 (11%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP----------TVGLNIGRIEV-SNS 68
           ++++G   AGKTT +  L    S+   +  +              TV ++ G IE+  ++
Sbjct: 13  IVVIGPVGAGKTTFVRAL----SDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDT 68

Query: 69  KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 128
            +  +   GQ   + +WE     A   + ++D++ P  F     A E +         P+
Sbjct: 69  GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFH----AEEIIDFLTSRNPIPV 124

Query: 129 LILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSG 167
           ++  NKQDL DA+  +++   L L+ L   V   +A  G
Sbjct: 125 VVAINKQDLFDALPPEKIREALKLELLSVPVIEIDATEG 163

Length = 187

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 65.2 bits (159), Expect = 9e-14
 Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 13/141 (9%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFW 73
           F ++++G    GKT L       Y    G  P+R   T+G++       I+    K+  W
Sbjct: 3   FKIIVIGDSNVGKTCL------TYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLW 56

Query: 74  DLGGQPGLR-SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
           D  GQ   R S+ + YY   HAVVFV D    + F    + +E+  ++      P +++ 
Sbjct: 57  DTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVG 116

Query: 133 NKQDLPDA--VSADELARYLD 151
           NK DL +   V  D   R+ D
Sbjct: 117 NKCDLREQIQVPTDLAQRFAD 137

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 55.5 bits (135), Expect = 3e-10
 Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 13/134 (9%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSNS--KLVFW 73
           F ++++G    GKT+LL +       V+    +    T+G++     IEV     KL  W
Sbjct: 1   FKIVLIGDSGVGKTSLLLRF------VDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIW 54

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   RSI   YY  AH  + V D      FE+    L ++         P++++ N
Sbjct: 55  DTAGQERFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAP-PNIPIILVGN 113

Query: 134 KQDLPD--AVSADE 145
           K DL D   VS +E
Sbjct: 114 KSDLEDERQVSTEE 127

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 53.4 bits (128), Expect = 2e-09
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 10/95 (10%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSK--LVFW 73
           F ++++G    GKT L+ +        +GL P     T+G++  I  +E+   K  L  W
Sbjct: 8   FKIVLIGNAGVGKTCLVRRF------TQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIW 61

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 108
           D  GQ   RSI + YY  A+A++   D  C   F 
Sbjct: 62  DTAGQERFRSITQSYYRSANALILTYDITCEESFR 96

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 52.9 bits (128), Expect = 3e-09
 Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 16/144 (11%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSNS--KLVFW 73
           F ++++G    GK++LL +        +G   ++   T+G++     IEV     KL  W
Sbjct: 1   FKIILIGDSGVGKSSLLSRF------TDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIW 54

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   RSI   YY  A   + V D      FE+ +  L+++          ++++ N
Sbjct: 55  DTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYAS-PNVVIMLVGN 113

Query: 134 KQDLPD--AVS---ADELARYLDL 152
           K DL +   VS   A+  A    L
Sbjct: 114 KSDLEEQRQVSREEAEAFAEEHGL 137

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP)

 Score = 52.7 bits (127), Expect = 5e-09
 Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 16/133 (12%)

Query: 19  HVLILGIDKAGKTTLLEKL--KSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
            VL+LG   +GKT L  KL    V S V  + P+  V +   N  +      KL   D+ 
Sbjct: 2   TVLLLGPSDSGKTALFTKLTTGKVRSTVTSIEPN--VASFYSNSSK----GKKLTLVDVP 55

Query: 77  GQPGLRSIWEKYYEEAH-AVVFVIDAACPSRFEDSKTALE---KVLRN-EDLQGA-PLLI 130
           G   LR    +Y + +  A+VFV+D+A  +  ++ +   E    +L + E ++   P+LI
Sbjct: 56  GHEKLRDKLLEYLKASLKAIVFVVDSA--TFQKNIRDVAEFLYDILTDLEKIKNKIPILI 113

Query: 131 LANKQDLPDAVSA 143
             NKQDL  A  A
Sbjct: 114 ACNKQDLFTAKPA 126

Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 52.1 bits (125), Expect = 7e-09
 Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 20/146 (13%)

Query: 18  FHVLILGIDKAGKTTLLEKLKS-VYSNVEG--LPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
           F ++++G    GKT ++++ KS  +S  +G  +  D  + T+ +   R+     KL  WD
Sbjct: 4   FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRV-----KLQIWD 58

Query: 75  LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP---LLIL 131
             GQ   R+I + YY  A+  +   D    S FE    ++   +   +  GA    LL++
Sbjct: 59  TAGQERFRTITQSYYRSANGAIIAYDITRRSSFE----SVPHWIEEVEKYGASNVVLLLI 114

Query: 132 ANKQDLPD--AVSADE---LARYLDL 152
            NK DL +   V  +E   LA +  +
Sbjct: 115 GNKCDLEEQREVLFEEACTLAEHYGI 140

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 48.8 bits (117), Expect = 8e-08
 Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 11/133 (8%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
             +L++G    GK++LL          +    + +  T+G++  +  + V     KL  W
Sbjct: 1   LKILLIGDSGVGKSSLL------LRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIW 54

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R++   YY  A  V+ V D      F++  T L ++        A  +++ N
Sbjct: 55  DTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGN 114

Query: 134 KQDLPD-AVSADE 145
           K D  +  V+ +E
Sbjct: 115 KIDKENREVTREE 127

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 16/145 (11%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
           F +L++G    GK+ LL +        E       + T+G++  I  IE+     KL  W
Sbjct: 4   FKLLLIGDSGVGKSCLLLRF------SEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIW 57

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY  A  ++ V D      FE+ K  +  +  +   +    +++ N
Sbjct: 58  DTAGQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHAS-EDVERMLVGN 116

Query: 134 KQDLPD--AVSADE---LARYLDLK 153
           K D+ +   VS +E   LAR   +K
Sbjct: 117 KCDMEEKRVVSKEEGEALAREYGIK 141

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 47.2 bits (112), Expect = 5e-07
 Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 10/125 (8%)

Query: 18  FHVLILGIDKAGKTTLLEKLK-SVYSN--VEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
           F +LI+G    GK++LL +   + +S   +  +  D  + TV +N  R+     KL  WD
Sbjct: 7   FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERV-----KLQIWD 61

Query: 75  LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 134
             GQ   R+I   YY   H V+ V D      F + K  L+++ +N D      +++ NK
Sbjct: 62  TAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDD--VCKVLVGNK 119

Query: 135 QDLPD 139
            D P+
Sbjct: 120 NDDPE 124

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 46.3 bits (111), Expect = 6e-07
 Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 16/143 (11%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFWDL 75
           ++++G    GK++LL          +   P+  +PT+G++     IEV     KL  WD 
Sbjct: 2   LVLVGDGGVGKSSLL------IRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDT 55

Query: 76  GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
            GQ   R++   YY  A   + V D      FE+ K  LE++LR+ D +  P++++ NK 
Sbjct: 56  AGQERFRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHAD-ENVPIVLVGNKC 114

Query: 136 DLPD--AVSADE---LARYLDLK 153
           DL D   VS +E   LA+ L L 
Sbjct: 115 DLEDQRVVSTEEGEALAKELGLP 137

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 53  VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC--------- 103
           V T G+   + +    K   +D+GGQ   R  W   +E+  A++FV+  +          
Sbjct: 153 VKTTGIIETKFDFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDD 212

Query: 104 -PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
             +R E+S    E++  +   +  P+++  NK+DL
Sbjct: 213 STNRLEESLNLFEEICNSPWFKNTPIILFLNKKDL 247

G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 25/146 (17%)

Query: 18  FHVLILGIDKAGKTTLL-----EKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSNSKL 70
             +++LG   +GKT+L+     E     Y             T+GL+    RI +  S  
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQ-----------TIGLDFFSRRITLPGSLN 49

Query: 71  V---FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR-NEDLQGA 126
           V    WD+GGQ     + +KY   A AV  V D      FE+ +  L  V + NE+ +  
Sbjct: 50  VTLQVWDIGGQQIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETK 109

Query: 127 PLLIL-ANKQDLPD--AVSADELARY 149
           P ++L  NK DL     V+A++ AR+
Sbjct: 110 PKMVLVGNKTDLEHNRQVTAEKHARF 135

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 3/118 (2%)

Query: 19  HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78
            V+++G   +GK++LL +L  V       P +    T+ ++   ++     L  WD GG+
Sbjct: 1   KVVVIGDKGSGKSSLLSQL--VGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGR 58

Query: 79  PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA-PLLILANKQ 135
             L+     + + A A++ V D        +    +  +     L G  P++++ NK 
Sbjct: 59  EELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 44.9 bits (106), Expect = 3e-06
 Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 14/126 (11%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN----IGRIEVSNSKLVFW 73
           F V+++G    GKT LL + K              + TVG+     +  ++    KL  W
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKD-----GAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIW 55

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR--NEDLQGAPLLIL 131
           D  GQ   RS+   YY +AHA++ + D    S F++ +  L ++L     D+    +++L
Sbjct: 56  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVV---IMLL 112

Query: 132 ANKQDL 137
            NK D+
Sbjct: 113 GNKADM 118

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 44.7 bits (105), Expect = 5e-06
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 11/87 (12%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
           F +L++G    GK++LL    S  S+VE L      PT+G++  I ++ V     KL  W
Sbjct: 15  FKILLIGDSGVGKSSLLVSFIS--SSVEDL-----APTIGVDFKIKQLTVGGKRLKLTIW 67

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVID 100
           D  GQ   R++   YY  A  ++ V D
Sbjct: 68  DTAGQERFRTLTSSYYRNAQGIILVYD 94

Length = 211

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 19/143 (13%)

Query: 18  FHVLILGIDKAGKTTLLEKL-KSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVF 72
           F +L++G    GK+ LL +     Y+       +  + T+G++  I  IE+     KL  
Sbjct: 3   FKLLLIGDSGVGKSCLLLRFADDTYT-------ESYISTIGVDFKIRTIELDGKTVKLQI 55

Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR--NEDLQGAPLLI 130
           WD  GQ   R+I   YY  AH ++ V D      F + K  L+++ R  +E++     L+
Sbjct: 56  WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNK---LL 112

Query: 131 LANKQDLPD--AVSADELARYLD 151
           + NK DL D   V   E   + D
Sbjct: 113 VGNKCDLTDKKVVDYTEAKEFAD 135

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 43.8 bits (104), Expect = 9e-06
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 9/96 (9%)

Query: 63  IEVSNSKLV---FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS---KTALEK 116
           IE   + +V    WD+ GQ     +   YY+ A   + V D   PS FE     K  L+ 
Sbjct: 42  IEWDPNTVVRLQLWDIAGQERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDS 101

Query: 117 VLRNEDLQGAPLLILANKQDL---PDAVSADELARY 149
            +   + +  P L+LANK DL     A   +++ ++
Sbjct: 102 KVTLPNGEPIPALLLANKCDLKKERLAKDPEQMDQF 137

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 35/129 (27%), Positives = 52/129 (40%), Gaps = 17/129 (13%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFW 73
           F  LI+G    GK+ LL +       +E         T+G+  G     +   + KL  W
Sbjct: 1   FKFLIIGSAGTGKSCLLHQF------IENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIW 54

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP---LLI 130
           D  GQ   RS+   YY  A   + V D      F     AL   L +     +P   +++
Sbjct: 55  DTAGQERFRSVTRSYYRGAAGALLVYDITSRESFN----ALTNWLTDARTLASPDIVIIL 110

Query: 131 LANKQDLPD 139
           + NK+DL D
Sbjct: 111 VGNKKDLED 119

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 39/135 (28%), Positives = 54/135 (40%), Gaps = 15/135 (11%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSV-YSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVF 72
           F  +I+G    GK+ LL +     +  V  L       T+G+  G     I+    KL  
Sbjct: 5   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-------TIGVEFGARMITIDGKQIKLQI 57

Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
           WD  GQ   RSI   YY  A   + V D      F    + LE   ++ +     +LI  
Sbjct: 58  WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLI-G 116

Query: 133 NKQDLPD--AVSADE 145
           NK DL     VS +E
Sbjct: 117 NKCDLESRREVSYEE 131

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query: 69  KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 128
           +L  WD  GQ   RS+   Y  ++   V V D      F+++   ++ V R+E      +
Sbjct: 50  RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDV-RDERGNDVII 108

Query: 129 LILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVS 166
           +++ NK DL D   VS +E       KK  E   MF   S
Sbjct: 109 VLVGNKTDLSDKRQVSTEEGE-----KKAKENNAMFIETS 143

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 18/107 (16%)

Query: 53  VPTVGLNIG--RIEVSNS--KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE 108
           +PT+G++ G  ++ V N   ++ F+DL G P    +  ++Y++   V+ V D        
Sbjct: 30  LPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDV----TDR 85

Query: 109 DSKTALEK--------VLRNEDLQGAPLLILANKQDLPD--AVSADE 145
            S  AL+            + +++   +++ ANK DL    AVS DE
Sbjct: 86  QSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDE 132

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 41.4 bits (97), Expect = 5e-05
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 55  TVGLN--IGRIEVSNS--KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 110
           T+G++  + R EV      L  WD  GQ   + I   YY  A A++ V D    +  E +
Sbjct: 32  TIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHT 91

Query: 111 KTALEKVLRNEDLQGAPLLILANKQDL--PDAVSADE 145
           +  LE  L+  D     L ++  K+DL  P   +  E
Sbjct: 92  RQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALME 128

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 20/149 (13%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GR-IEVSNS---KLV 71
           +F ++++G    GK++LL++        EG   +   PTVG++   R IE+      KL 
Sbjct: 2   QFRLIVIGDSTVGKSSLLKRF------TEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQ 55

Query: 72  FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG-APLLI 130
            WD  GQ   RSI   YY  +  V+ V D      FE     LE+   +  +Q   P+ I
Sbjct: 56  LWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSH--IQPHRPVFI 113

Query: 131 L-ANKQDLPD--AVSADE---LARYLDLK 153
           L  +K DL     V+ +E   LA+ L +K
Sbjct: 114 LVGHKCDLESQRQVTREEAEKLAKDLGMK 142

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 12/127 (9%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDL 75
           +++LG    GK+ L+E+       ++G  P + + T  L + +     E     + FWD 
Sbjct: 3   IILLGDSAVGKSKLVERFL-----MDGYEP-QQLSTYALTLYKHNAKFEGKTILVDFWDT 56

Query: 76  GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
            GQ   +++   YY +AHA + V D      +++     E+ LR E     P +++ANK 
Sbjct: 57  AGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEE-LR-EYRPEIPCIVVANKI 114

Query: 136 DLPDAVS 142
           DL  +V+
Sbjct: 115 DLDPSVT 121

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 8/104 (7%)

Query: 69  KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 128
           +L  WD  GQ   RS+   Y  ++ A + V D      FE++   ++ +L NE  +   +
Sbjct: 30  RLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDIL-NERGKDVII 88

Query: 129 LILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG 170
            ++ NK DL D   V+ +E      ++K  E   MF   S   G
Sbjct: 89  ALVGNKTDLGDLRKVTYEE-----GMQKAQEYNTMFHETSAKAG 127

Length = 176

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 22/127 (17%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK---LVFWDLG 76
           ++++G    GKT LL      Y+      P   VPTV  N       + K   L  WD  
Sbjct: 3   IVVVGDGAVGKTCLL----ISYTT--NKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTA 56

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR------NEDLQGAPLLI 130
           GQ     +    Y +    VF++   C S   DS ++ E V               P+++
Sbjct: 57  GQEEYDRLRPLSYPQTD--VFLL---CFSV--DSPSSFENVKTKWYPEIKHYCPNVPIIL 109

Query: 131 LANKQDL 137
           +  K DL
Sbjct: 110 VGTKIDL 116

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 40/138 (28%), Positives = 52/138 (37%), Gaps = 21/138 (15%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG------RIEVSNS--K 69
           F  +I+G    GK+ LL +              R  P   L IG       I + N   K
Sbjct: 7   FKYIIIGDTGVGKSCLLLQFTD----------KRFQPVHDLTIGVEFGARMITIDNKPIK 56

Query: 70  LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
           L  WD  GQ   RSI   YY  A   + V D      F    + LE   R        ++
Sbjct: 57  LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDA-RQHANANMTIM 115

Query: 130 ILANKQDLPD--AVSADE 145
           ++ NK DL    AVS +E
Sbjct: 116 LIGNKCDLAHRRAVSTEE 133

Length = 210

>gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 28/140 (20%)

Query: 18  FHVLILGIDKAGKTTLLEKL--KSVYSNVEGLPPDRIVPTVG-LNIGRIEVSNSKLVFWD 74
           F + ++G   AGK+TLL  L  + V      L P  + PT   + + R  +    +V  D
Sbjct: 1   FLLAVVGEFSAGKSTLLNALLGEEV------L-PTGVTPTTAVITVLRYGLLK-GVVLVD 52

Query: 75  LGGQPGLRS-------IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP 127
               PGL S       I E +   A AV+FV+ A  P   E  +  L+++L+     G  
Sbjct: 53  T---PGLNSTIEHHTEITESFLPRADAVIFVLSADQPLT-ESEREFLKEILKWS---GKK 105

Query: 128 LLILANKQDLPDAVSADELA 147
           +  + NK DL   +S +EL 
Sbjct: 106 IFFVLNKIDL---LSEEELE 122

The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 36/144 (25%), Positives = 55/144 (38%), Gaps = 21/144 (14%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP----TVGLNIGR--IEVSNS--K 69
           F  +I+G    GK+ LL +              + +     T+G+  G   IEV+    K
Sbjct: 3   FKYIIIGDMGVGKSCLLHQFTE----------KKFMADCPHTIGVEFGTRIIEVNGQKIK 52

Query: 70  LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
           L  WD  GQ   R++   YY  A   + V D    S +    + L       +      L
Sbjct: 53  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFL 112

Query: 130 ILANKQDLPDA--VSADELARYLD 151
           I  NK DL     V+ +E  ++ D
Sbjct: 113 I-GNKADLEAQRDVTYEEAKQFAD 135

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 15/135 (11%)

Query: 18  FHVLILGIDKAGKTTLL-----EKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF 72
           F +LI+G    GKT+ L     +   S + +  G+  D  V TV  N  RI     KL  
Sbjct: 2   FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGI--DFKVKTVYRNDKRI-----KLQI 54

Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
           WD  GQ   R+I   YY  A   + + D      F   +    ++ +      A ++++ 
Sbjct: 55  WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI-KTYSWDNAQVILVG 113

Query: 133 NKQDLPD--AVSADE 145
           NK D+ D   VSA+ 
Sbjct: 114 NKCDMEDERVVSAER 128

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 38.8 bits (90), Expect = 5e-04
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 9/120 (7%)

Query: 20  VLILGIDKAGKTTLLEKL---KSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           V+I+G    GKT+L+E+        +    +  D  + TV L   +I     +L  WD  
Sbjct: 3   VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKI-----RLQIWDTA 57

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
           GQ    SI   YY  A  ++ V D      F+D    + K++     + A LL++ NK D
Sbjct: 58  GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWM-KMIDKYASEDAELLLVGNKLD 116

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 38.3 bits (90), Expect = 5e-04
 Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 27/146 (18%)

Query: 17  EFHVLILGIDKAGKTTLLEKL-KSVYSNVEGLPPDRIVPTVG-------LNIGRIEVSNS 68
           +F +++LG    GK++++ +  K+ +S       +    T+G       +N+    V   
Sbjct: 1   QFKLVLLGDSSVGKSSIVLRFVKNEFS-------ENQESTIGAAFLTQTVNLDDTTV--- 50

Query: 69  KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 128
           K   WD  GQ   RS+   YY  A A + V D      FE +K+ + K L+     G P 
Sbjct: 51  KFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWV-KELQE---HGPPN 106

Query: 129 LILA---NKQDLPD--AVSADELARY 149
           +++A   NK DL     VS +E   Y
Sbjct: 107 IVIALAGNKADLESKRQVSTEEAQEY 132

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 25/165 (15%)

Query: 21  LILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSNSK--------- 69
           L LG    GKTT L      Y   +     + + TVG++    R+  ++           
Sbjct: 8   LALGDSGVGKTTFL------YRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAF 61

Query: 70  ---LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA 126
              L  WD  GQ   RS+   ++ +A   + + D      F + +  + ++  +   +  
Sbjct: 62  RVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENP 121

Query: 127 PLLILANKQDLPD--AVSAD---ELARYLDLKKLDERVCMFEAVS 166
            ++++ NK DLPD   VS     ELA    +   +      + V 
Sbjct: 122 DIVLIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVE 166

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 34/161 (21%), Positives = 54/161 (33%), Gaps = 35/161 (21%)

Query: 22  ILGIDKAGKTTLL-----EKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           I G    GK++LL     + +  V S + G   D +     L           +V  D  
Sbjct: 2   IFGRPNVGKSSLLNALLGQNVGIV-SPIPGTTRDPVRKEWELLPLG------PVVLIDT- 53

Query: 77  GQPGL-----------RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
             PGL               +   + A  V+ V+D+        +    E  L     +G
Sbjct: 54  --PGLDEEGGLGRERVEEARQVA-DRADLVLLVVDSD------LTPVEEEAKLGLLRERG 104

Query: 126 APLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVS 166
            P+L++ NK DL     ++E     + K          AVS
Sbjct: 105 KPVLLVLNKIDLVPE--SEEEELLRERKLELLPDLPVIAVS 143

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|233986 TIGR02729, Obg_CgtA, Obg family GTPase CgtA

 Score = 38.6 bits (91), Expect = 7e-04
 Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 35/169 (20%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK-LVFWDLGGQ 78
           V ++G+  AGK+TL+  + +    +   P   +VP    N+G + V + +  V  D+   
Sbjct: 160 VGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVP----NLGVVRVDDGRSFVIADI--- 212

Query: 79  PG---------------LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR---- 119
           PG               L+ I     E    ++ +ID + P    D     E +      
Sbjct: 213 PGLIEGASEGAGLGHRFLKHI-----ERTRVLLHLIDIS-PEDGSDPIEDYEIIRNELKK 266

Query: 120 -NEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSG 167
            + +L   P +++ NK DL D    +EL + L  + L + V    A++G
Sbjct: 267 YSPELAEKPRIVVLNKIDLLDEEELEELLKEL-KEALGKPVFPISALTG 314

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal [Protein synthesis, Other]. Length = 329

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 38.7 bits (91), Expect = 7e-04
 Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 25/136 (18%)

Query: 18  FHVLILGIDKAGKTTLLEKL----KSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFW 73
             V I+G    GK+TL  +L     ++ S+  G+  DRI        G  E    + +  
Sbjct: 4   PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRI-------YGDAEWLGREFILI 56

Query: 74  DLGG------QPGLRSIWEKYY---EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQ 124
           D GG            I E+     EEA  ++FV+D        D + A  K+LR     
Sbjct: 57  DTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIA--KILRR---S 111

Query: 125 GAPLLILANKQDLPDA 140
             P++++ NK D   A
Sbjct: 112 KKPVILVVNKIDNLKA 127

Length = 444

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 37.8 bits (88), Expect = 7e-04
 Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 25/147 (17%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSNS----KLVFW 73
           V+++G    GK++++++       V+G+       T+G++    +I +  S    +L+ W
Sbjct: 3   VIVVGNGNVGKSSMIQRF------VKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLW 56

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFV---IDAACPSRFEDSKTALEKVLRNEDLQGAPLLI 130
           D  GQ    +I + YY  A A + V    D       E  K  +E    +      P+++
Sbjct: 57  DTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGD-----IPMVL 111

Query: 131 LANKQDLPD--AVSADE---LARYLDL 152
           +  K DL D   ++ +E   LA+ L L
Sbjct: 112 VQTKIDLLDQAVITNEEAEALAKRLQL 138

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 9/124 (7%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTV-GLNIGRIEV--SNSKLVFW 73
           E+ V++LG    GK+ L  +       V G   ++  PT+       IEV  S S L   
Sbjct: 1   EYKVVVLGSGGVGKSALTVQF------VSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEIL 54

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  G     S+ + Y +     + V        F+D K   ++++R +  +  P++++ N
Sbjct: 55  DTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGN 114

Query: 134 KQDL 137
           K DL
Sbjct: 115 KVDL 118

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 14/134 (10%)

Query: 20  VLILGIDKAGKTTLLEKLKS-------VYSNVEGLPPDRIVPTVGLNIGRIEVSNS-KLV 71
             ++G    GK+ L++   S        Y+   G   D +V TV +     + S+S +L 
Sbjct: 3   CAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGC--DLVVKTVPVP----DTSDSVELF 56

Query: 72  FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131
            +D  GQ     + E  +E+   V  V D      F +    + +V  +      P +++
Sbjct: 57  IFDSAGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLV 116

Query: 132 ANKQDLPDAVSADE 145
            NK DL D    D 
Sbjct: 117 GNKCDLTDRREVDA 130

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 37.2 bits (86), Expect = 0.001
 Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 9/126 (7%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IEVSNSK--LVFW 73
           E+ +++LG    GK+ L  +       V+G+  D+  PT+  +  + IEV   +  L   
Sbjct: 1   EYKLVVLGSGGVGKSALTVQF------VQGIFVDKYDPTIEDSYRKQIEVDCQQCMLEIL 54

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  G     ++ + Y +       V        F D +   E++LR +D +  P++++ N
Sbjct: 55  DTAGTEQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGN 114

Query: 134 KQDLPD 139
           K DL D
Sbjct: 115 KCDLED 120

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 10/95 (10%)

Query: 53  VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI----------DAA 102
           VPT G+      V       +D+GGQ   R  W   ++   A++F +          +  
Sbjct: 169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDE 228

Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
             +R ++S    E +  +       +++  NK DL
Sbjct: 229 STNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263

Subunit of G proteins that contains the guanine nucleotide binding site. Length = 342

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 29/131 (22%)

Query: 19  HVLILGIDKAGKTTLLEKL---KSVY-SNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
            V ++G    GK+TL+  L   K    S+  G        T    +G +     +++  D
Sbjct: 1   RVALVGRPNVGKSTLINALTGAKVAIVSDYPGT-------TRDPILGVLG-LGRQIILVD 52

Query: 75  LGG----------QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN-EDL 123
             G            G     E    EA  ++ V+DA+     +D     E++L   E L
Sbjct: 53  TPGLIEGASEGKGVEGFNRFLEAI-READLILLVVDASEGLTEDD-----EEILEELEKL 106

Query: 124 QGAPLLILANK 134
              P++++ NK
Sbjct: 107 PKKPIILVLNK 117

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta subunit

 Score = 35.9 bits (83), Expect = 0.004
 Identities = 36/136 (26%), Positives = 54/136 (39%), Gaps = 23/136 (16%)

Query: 20  VLILGIDKAGKTTLLEKL------KSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFW 73
           V+I G+  +GKT+L   L      K+V S           P+        +  +  L+  
Sbjct: 6   VIIAGLCDSGKTSLFTLLTTGTVKKTVTS---------QEPSAAYKYMLHKGFSFTLI-- 54

Query: 74  DLGGQPGLRS-IWE--KYYEEAHAVVFVID-AACPSRFEDSKTALEKVLRNEDL--QGAP 127
           D  G   LR  + E  K       +VFV+D  A P    D+   L ++L   +L   G  
Sbjct: 55  DFPGHVKLRQKLLETIKDSSSLRGIVFVVDSTAFPKEVTDTAEFLYEILSITELLKNGID 114

Query: 128 LLILANKQDLPDAVSA 143
           +LI  NKQ+   A   
Sbjct: 115 ILIACNKQESFTARPP 130

The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	170
PLN00223	181	ADP-ribosylation factor; Provisional	100.0
PTZ00133	182	ADP-ribosylation factor; Provisional	100.0
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	100.0
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.98
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.97
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.97
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.97
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.97
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.97
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.97
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.97
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.97
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.96
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.96
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.96
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.96
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.96
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.96
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.96
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.96
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.96
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.96
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.96
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.96
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.96
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
PTZ00369	189	Ras-like protein; Provisional	99.96
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.96
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.96
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.96
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.96
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.96
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.96
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.96
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.96
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.96
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.96
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.96
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.96
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.96
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.96
KOG0394	210	consensus Ras-related GTPase [General function pre	99.96
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.96
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.96
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.96
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.96
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.96
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.95
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.95
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.95
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.95
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.95
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.95
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.95
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.95
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.95
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.95
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.95
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.95
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.95
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.95
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.95
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.95
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.95
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.95
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.95
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.95
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.95
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.95
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.95
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.95
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.95
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.95
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.95
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.95
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.95
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.94
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.94
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.94
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.94
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.94
PLN03110	216	Rab GTPase; Provisional	99.94
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.94
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.94
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.94
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.94
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.94
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.94
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.94
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.94
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.94
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.94
PLN03108	210	Rab family protein; Provisional	99.94
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.94
PLN03118	211	Rab family protein; Provisional	99.94
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.94
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.94
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.93
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.93
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.93
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.93
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.93
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.93
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.93
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.93
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.93
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.93
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.93
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.93
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.93
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.93
KOG0395	196	consensus Ras-related GTPase [General function pre	99.92
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.92
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.92
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.92
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.91
PLN00023	334	GTP-binding protein; Provisional	99.91
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.9
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.9
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.9
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.9
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.89
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.89
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.89
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.89
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.89
PRK12299	335	obgE GTPase CgtA; Reviewed	99.88
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.88
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.88
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.88
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.87
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.86
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.86
cd00881	189	GTP_translation_factor GTP translation factor fami	99.86
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.86
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.86
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.86
COG1100	219	GTPase SAR1 and related small G proteins [General	99.86
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.85
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.85
PRK15494	339	era GTPase Era; Provisional	99.85
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.85
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.85
PRK12296	500	obgE GTPase CgtA; Reviewed	99.85
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.85
PRK03003	472	GTP-binding protein Der; Reviewed	99.85
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.85
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.85
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.85
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.84
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.84
PRK12317	425	elongation factor 1-alpha; Reviewed	99.84
PRK04213	201	GTP-binding protein; Provisional	99.84
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.84
PRK12297	424	obgE GTPase CgtA; Reviewed	99.84
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.84
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.84
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.84
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.83
PTZ00099	176	rab6; Provisional	99.83
COG2229	187	Predicted GTPase [General function prediction only	99.83
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.83
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.82
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.82
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.82
PRK03003	472	GTP-binding protein Der; Reviewed	99.82
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.82
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.81
PRK00093	435	GTP-binding protein Der; Reviewed	99.81
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.81
CHL00189	742	infB translation initiation factor 2; Provisional	99.81
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.81
PRK12298	390	obgE GTPase CgtA; Reviewed	99.81
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.81
PRK05306	787	infB translation initiation factor IF-2; Validated	99.8
COG1159	298	Era GTPase [General function prediction only]	99.8
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.8
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.8
PRK00093	435	GTP-binding protein Der; Reviewed	99.79
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.79
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.79
PRK00089	292	era GTPase Era; Reviewed	99.79
PRK10218	607	GTP-binding protein; Provisional	99.79
PRK11058	426	GTPase HflX; Provisional	99.79
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.78
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.78
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.78
PRK12736	394	elongation factor Tu; Reviewed	99.78
CHL00071	409	tufA elongation factor Tu	99.78
PRK05433	600	GTP-binding protein LepA; Provisional	99.78
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.78
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.77
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.77
PRK12735	396	elongation factor Tu; Reviewed	99.77
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.77
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.77
PLN00043	447	elongation factor 1-alpha; Provisional	99.77
PLN03126	478	Elongation factor Tu; Provisional	99.77
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.77
COG1160	444	Predicted GTPases [General function prediction onl	99.76
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.76
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.76
PRK04004	586	translation initiation factor IF-2; Validated	99.75
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.75
COG0486	454	ThdF Predicted GTPase [General function prediction	99.75
COG1084	346	Predicted GTPase [General function prediction only	99.74
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.74
PTZ00141	446	elongation factor 1- alpha; Provisional	99.74
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.74
PRK00049	396	elongation factor Tu; Reviewed	99.74
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.74
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.74
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.74
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.74
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.73
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.73
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.73
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.72
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.72
COG1160	444	Predicted GTPases [General function prediction onl	99.72
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.72
PLN03127	447	Elongation factor Tu; Provisional	99.72
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.71
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.71
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.71
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.7
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.7
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.7
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.69
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.69
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.68
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.67
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.67
KOG1673	205	consensus Ras GTPases [General function prediction	99.67
COG0536	369	Obg Predicted GTPase [General function prediction	99.67
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.67
KOG1145	683	consensus Mitochondrial translation initiation fac	99.66
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.66
PRK12739	691	elongation factor G; Reviewed	99.65
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.64
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.64
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.64
PRK00007	693	elongation factor G; Reviewed	99.64
COG0218	200	Predicted GTPase [General function prediction only	99.64
PRK13351	687	elongation factor G; Reviewed	99.63
KOG0090	238	consensus Signal recognition particle receptor, be	99.63
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.63
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.63
COG2262	411	HflX GTPases [General function prediction only]	99.62
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.6
COG1163	365	DRG Predicted GTPase [General function prediction	99.59
PRK09866	741	hypothetical protein; Provisional	99.57
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.55
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.55
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.54
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.54
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.54
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.54
COG3596	296	Predicted GTPase [General function prediction only	99.53
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.52
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.52
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.51
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.51
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.5
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.49
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.48
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.48
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.48
PRK12740	668	elongation factor G; Reviewed	99.44
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.43
PTZ00258	390	GTP-binding protein; Provisional	99.42
PRK07560	731	elongation factor EF-2; Reviewed	99.42
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.41
PTZ00416	836	elongation factor 2; Provisional	99.4
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.4
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.39
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.38
PRK14845	1049	translation initiation factor IF-2; Provisional	99.38
PRK09601	364	GTP-binding protein YchF; Reviewed	99.37
PRK13768	253	GTPase; Provisional	99.37
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.36
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.35
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.35
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.33
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.32
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.31
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.3
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.3
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.29
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.28
PRK09602	396	translation-associated GTPase; Reviewed	99.26
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.22
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.2
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.19
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.18
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.18
KOG0460	449	consensus Mitochondrial translation elongation fac	99.18
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.17
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.15
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.15
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.12
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.12
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.11
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.09
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.06
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.05
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.05
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.03
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.01
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.99
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.98
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	98.96
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	98.96
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.95
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.95
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.94
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.92
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.9
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.89
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.83
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.82
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.8
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.77
KOG0410	410	consensus Predicted GTP binding protein [General f	98.76
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.76
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.75
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.74
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	98.74
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.74
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.71
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.7
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.69
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.68
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	98.68
KOG1143	591	consensus Predicted translation elongation factor	98.64
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.62
KOG2486	320	consensus Predicted GTPase [General function predi	98.6
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.6
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	98.57
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.57
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.57
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.56
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.54
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.52
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.51
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	98.5
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.5
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.48
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.48
PRK12289	352	GTPase RsgA; Reviewed	98.47
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.47
cd03112	158	CobW_like The function of this protein family is u	98.46
COG1161	322	Predicted GTPases [General function prediction onl	98.45
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.44
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.43
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.43
PRK00098	298	GTPase RsgA; Reviewed	98.42
PRK12288	347	GTPase RsgA; Reviewed	98.42
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.4
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.37
PRK13796	365	GTPase YqeH; Provisional	98.36
cd03114	148	ArgK-like The function of this protein family is u	98.35
KOG1534	273	consensus Putative transcription factor FET5 [Tran	98.34
PRK12289	352	GTPase RsgA; Reviewed	98.34
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.31
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.27
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.24
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.23
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.23
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.22
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.22
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.21
PRK10416	318	signal recognition particle-docking protein FtsY;	98.19
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.16
PRK12288	347	GTPase RsgA; Reviewed	98.16
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.15
PRK14974	336	cell division protein FtsY; Provisional	98.14
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.12
COG1162	301	Predicted GTPases [General function prediction onl	98.12
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.11
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.11
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.11
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	98.09
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.07
PRK00098	298	GTPase RsgA; Reviewed	98.07
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.05
KOG1533	290	consensus Predicted GTPase [General function predi	98.04
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	98.02
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	98.02
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.98
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	97.97
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.95
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.94
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.94
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.94
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.92
COG0523	323	Putative GTPases (G3E family) [General function pr	97.9
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.89
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.88
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.88
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.84
TIGR00959	428	ffh signal recognition particle protein. This mode	97.83
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.81
PRK10867	433	signal recognition particle protein; Provisional	97.81
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.8
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.79
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.77
COG3523	1188	IcmF Type VI protein secretion system component Va	97.75
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.75
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.73
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.71
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.71
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.68
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.63
cd03111	106	CpaE_like This protein family consists of proteins	97.61
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.61
PRK08118	167	topology modulation protein; Reviewed	97.61
cd02036	179	MinD Bacterial cell division requires the formatio	97.6
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.6
PRK07261	171	topology modulation protein; Provisional	97.59
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.58
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.58
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.57
PF05729	166	NACHT: NACHT domain	97.53
PRK01889	356	GTPase RsgA; Reviewed	97.52
KOG2484	435	consensus GTPase [General function prediction only	97.51
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.49
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.46
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.46
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.46
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.43
PRK13796	365	GTPase YqeH; Provisional	97.42
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.42
KOG2484	435	consensus GTPase [General function prediction only	97.41
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.41
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.4
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	97.39
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.37
PRK06217	183	hypothetical protein; Validated	97.36
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.36
PRK01889	356	GTPase RsgA; Reviewed	97.33
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.32
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	97.31
PRK03839	180	putative kinase; Provisional	97.31
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.28
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.27
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.27
PRK05480	209	uridine/cytidine kinase; Provisional	97.25
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.23
PRK14530	215	adenylate kinase; Provisional	97.22
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.21
PRK06547	172	hypothetical protein; Provisional	97.21
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.21
PRK08233	182	hypothetical protein; Provisional	97.2
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.2
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.2
PF00004	132	AAA: ATPase family associated with various cellula	97.18
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.17
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.17
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.17
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.17
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.17
PRK14532	188	adenylate kinase; Provisional	97.16
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	97.15
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.15
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.15
PRK13851	344	type IV secretion system protein VirB11; Provision	97.15
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	97.15
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.14
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.14
smart00382	148	AAA ATPases associated with a variety of cellular	97.14
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.14
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	97.13
cd03269	210	ABC_putative_ATPase This subfamily is involved in	97.13
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	97.13
PRK13949	169	shikimate kinase; Provisional	97.13
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	97.13
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	97.12
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.12
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.12
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.12
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.12
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.12
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	97.12
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	97.12
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.11
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	97.11
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	97.11
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.11
KOG0781	587	consensus Signal recognition particle receptor, al	97.11

>PLN00223 ADP-ribosylation factor; Provisional

Probab=100.00  E-value=2.3e-32  Score=190.62  Aligned_cols=163  Identities=36%  Similarity=0.680  Sum_probs=137.6

Q ss_pred             ChhhhHHHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848            1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (170)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   80 (170)
                      ||.+++.+|...+.++.+||+++|.+|||||||++++..      +... ...||++.....++..+..+.+||+||++.
T Consensus         1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~------~~~~-~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~   73 (181)
T PLN00223          1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKL------GEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDK   73 (181)
T ss_pred             CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHcc------CCCc-cccCCcceeEEEEEECCEEEEEEECCCCHH
Confidence            887787888777778889999999999999999999964      2222 345777777777888889999999999999


Q ss_pred             chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccccccee
Q 030848           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC  160 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  160 (170)
                      +...+..+++++|++|+|+|++++.++++...++..+......++.|+++++||+|+++....+++.+.+.......+.+
T Consensus        74 ~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~  153 (181)
T PLN00223         74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHW  153 (181)
T ss_pred             HHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCce
Confidence            99999999999999999999999999998888888877654446799999999999998888888888887555555667


Q ss_pred             EEEeeeccCC
Q 030848          161 MFEAVSGYDG  170 (170)
Q Consensus       161 ~~~~~Sa~~g  170 (170)
                      .+++|||++|
T Consensus       154 ~~~~~Sa~~g  163 (181)
T PLN00223        154 YIQSTCATSG  163 (181)
T ss_pred             EEEeccCCCC
Confidence            7889999987

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=100.00  E-value=2.8e-32  Score=190.35  Aligned_cols=163  Identities=37%  Similarity=0.676  Sum_probs=136.5

Q ss_pred             ChhhhHHHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848            1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (170)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   80 (170)
                      ||.+++.+++..+.++++||+++|++|+|||||++++..      +... .+.||++.....++..+..+.+||+||++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~------~~~~-~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~   73 (182)
T PTZ00133          1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKL------GEVV-TTIPTIGFNVETVEYKNLKFTMWDVGGQDK   73 (182)
T ss_pred             CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhc------CCcc-ccCCccccceEEEEECCEEEEEEECCCCHh
Confidence            898898999988888999999999999999999999964      2222 234677776667778889999999999999


Q ss_pred             chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccccccee
Q 030848           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC  160 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  160 (170)
                      +...+..+++.+|++|+|+|++++.++.....++..+.......+.|+++++||.|+++....+++.+.+.........+
T Consensus        74 ~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~  153 (182)
T PTZ00133         74 LRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNW  153 (182)
T ss_pred             HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcE
Confidence            99999999999999999999999999998888888876543345789999999999987777777777776555555667


Q ss_pred             EEEeeeccCC
Q 030848          161 MFEAVSGYDG  170 (170)
Q Consensus       161 ~~~~~Sa~~g  170 (170)
                      .++++||++|
T Consensus       154 ~~~~~Sa~tg  163 (182)
T PTZ00133        154 YIQGCCATTA  163 (182)
T ss_pred             EEEeeeCCCC
Confidence            8889999987

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.9e-33  Score=188.49  Aligned_cols=144  Identities=29%  Similarity=0.500  Sum_probs=127.8

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE----EEecCeEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ...+||+++|++|+|||+|+.|+..      +.+.+.+..|+++.+..    ++++..+++||||+||++++.....|++
T Consensus         7 dylFKiiliGds~VGKtCL~~Rf~~------~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR   80 (205)
T KOG0084|consen    7 DYLFKIILIGDSGVGKTCLLLRFKD------DTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYR   80 (205)
T ss_pred             ceEEEEEEECCCCcChhhhhhhhcc------CCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhcc
Confidence            4568999999999999999999988      88899999999998774    3345678999999999999999999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeE-EEeeec
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCM-FEAVSG  167 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa  167 (170)
                      .+|++|+|||+++.+||+.+..|+.++-.+.. .++|.++|+||+|+.+  ..+.++.+++..     ..+++ |+|+||
T Consensus        81 ~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~-----~~~~~~f~ETSA  154 (205)
T KOG0084|consen   81 GAHGIIFVYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKRVVSTEEAQEFAD-----ELGIPIFLETSA  154 (205)
T ss_pred             CCCeEEEEEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhheecCHHHHHHHHH-----hcCCcceeeccc
Confidence            99999999999999999999999999977655 6789999999999987  567777777777     66667 999999


Q ss_pred             cCC
Q 030848          168 YDG  170 (170)
Q Consensus       168 ~~g  170 (170)
                      |.+
T Consensus       155 K~~  157 (205)
T KOG0084|consen  155 KDS  157 (205)
T ss_pred             CCc
Confidence            974

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=100.00  E-value=4.7e-31  Score=183.12  Aligned_cols=159  Identities=36%  Similarity=0.706  Sum_probs=130.0

Q ss_pred             ChhhhHHHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848            1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (170)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   80 (170)
                      ||.+..+.    .+++.+||+++|++|+|||||++++..      +.. ..+.||++.....+......+.+||+||++.
T Consensus         1 ~~~~~~~~----~~~~~~ki~l~G~~~~GKTsL~~~~~~------~~~-~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~   69 (175)
T smart00177        1 MGKLFSKL----FGNKEMRILMVGLDAAGKTTILYKLKL------GES-VTTIPTIGFNVETVTYKNISFTVWDVGGQDK   69 (175)
T ss_pred             Cchhhhhh----cCCCccEEEEEcCCCCCHHHHHHHHhc------CCC-CCcCCccccceEEEEECCEEEEEEECCCChh
Confidence            77664444    335679999999999999999999964      222 2345677777666777888999999999999


Q ss_pred             chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccccccee
Q 030848           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC  160 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  160 (170)
                      +...+..+++++|++|+|+|++++.++++..+++..+......++.|+++++||+|+.+..+.+++.+.+.......+.+
T Consensus        70 ~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~  149 (175)
T smart00177       70 IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNW  149 (175)
T ss_pred             hHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcE
Confidence            99999999999999999999999999999999998887654446789999999999988777778877776555556677


Q ss_pred             EEEeeeccCC
Q 030848          161 MFEAVSGYDG  170 (170)
Q Consensus       161 ~~~~~Sa~~g  170 (170)
                      .++++||++|
T Consensus       150 ~~~~~Sa~~g  159 (175)
T smart00177      150 YIQPTCATSG  159 (175)
T ss_pred             EEEEeeCCCC
Confidence            8999999987

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04149 Arf6 Arf6 subfamily

Probab=99.98  E-value=7.5e-31  Score=180.97  Aligned_cols=151  Identities=36%  Similarity=0.726  Sum_probs=125.1

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      ..++.+||+++|++|+|||||++++..      +.. ..+.||++.....+...+..+.+|||||++.+...+..+++++
T Consensus         5 ~~~~~~kv~i~G~~~~GKTsli~~l~~------~~~-~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a   77 (168)
T cd04149           5 FGNKEMRILMLGLDAAGKTTILYKLKL------GQS-VTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGT   77 (168)
T ss_pred             cCCCccEEEEECcCCCCHHHHHHHHcc------CCC-ccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccC
Confidence            446779999999999999999999965      122 2345677776666777889999999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      |++|+|+|++++.++++...++.++......++.|+++++||+|+.+....+++.+.++........++++++||++|
T Consensus        78 ~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g  155 (168)
T cd04149          78 QGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSG  155 (168)
T ss_pred             CEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCC
Confidence            999999999999999999888888876544467899999999999877778888888765444445668999999987

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.1e-30  Score=177.17  Aligned_cols=144  Identities=26%  Similarity=0.405  Sum_probs=126.7

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE----ecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE----VSNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      +..|++++|+.++|||||++++..      +.....+.+|+++.+...+    ....++++|||+|||+++.+.+.|+++
T Consensus        21 k~~KlVflGdqsVGKTslItRf~y------d~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rd   94 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMY------DKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD   94 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHH------hhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccC
Confidence            448999999999999999999987      6666788889998876433    345789999999999999999999999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +.++|+|||+++..+|+.+..|+.......+..++.+++|+||.||.+  +...+|....++     ..+..|+++||+.
T Consensus        95 s~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAk-----el~a~f~etsak~  169 (221)
T KOG0094|consen   95 SSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAK-----ELNAEFIETSAKA  169 (221)
T ss_pred             CeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHH-----HhCcEEEEecccC
Confidence            999999999999999999999999999988766789999999999987  566677776666     7777999999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       170 g  170 (221)
T KOG0094|consen  170 G  170 (221)
T ss_pred             C
Confidence            7

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.2e-30  Score=176.72  Aligned_cols=144  Identities=27%  Similarity=0.431  Sum_probs=127.5

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE--ecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE--VSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ..++||+++|+.++|||||+-|+..      +.+.+...+|++.-+....  ..+  .++.||||+|+|++.++.+.|+|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk------~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyR   76 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVK------DQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYR   76 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhh------CccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceec
Confidence            4679999999999999999999976      6666667788888766433  333  78999999999999999999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      +++++|+|||+++.+||..++.|..++..... +++-|.+++||+|+.+  +++.++...++.     .....|+|+|||
T Consensus        77 gA~AAivvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe-----~~gll~~ETSAK  150 (200)
T KOG0092|consen   77 GANAAIVVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYAE-----SQGLLFFETSAK  150 (200)
T ss_pred             CCcEEEEEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHHH-----hcCCEEEEEecc
Confidence            99999999999999999999999999988765 7888888999999987  889999999998     677789999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       151 Tg  152 (200)
T KOG0092|consen  151 TG  152 (200)
T ss_pred             cc
Confidence            97

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=8.6e-30  Score=174.22  Aligned_cols=146  Identities=37%  Similarity=0.717  Sum_probs=119.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEE
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF   97 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   97 (170)
                      +||+++|.+|+|||||++++..      +... .+.||++.....+......+.+||+||++.+...+..+++++|++|+
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~------~~~~-~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~   73 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKL------GEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   73 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc------CCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            5899999999999999999964      2222 34567777666677788999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           98 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        98 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      |+|++++.+++....++..+.......+.|+++++||+|+.+....+++.+.+.......+.+.++++||++|
T Consensus        74 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g  146 (159)
T cd04150          74 VVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSG  146 (159)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCC
Confidence            9999999999999888888875544456899999999999876666666666654444456778999999987

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.97  E-value=1.8e-29  Score=174.99  Aligned_cols=160  Identities=39%  Similarity=0.688  Sum_probs=129.7

Q ss_pred             hhHHHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh
Q 030848            4 LFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS   83 (170)
Q Consensus         4 ~~~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   83 (170)
                      |+.+++..+..++..+|+++|++|+|||||++++..      +... ...++.+.....+...+..+.+||+||++.+..
T Consensus         2 ~~~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~   74 (174)
T cd04153           2 LFSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLL------GEVV-HTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRS   74 (174)
T ss_pred             chhHHHHHhcCCCccEEEEECCCCCCHHHHHHHHcc------CCCC-CcCCccccceEEEEECCeEEEEEECCCCHHHHH
Confidence            456677777666789999999999999999999975      2222 234666666667778889999999999999999


Q ss_pred             hHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEE
Q 030848           84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFE  163 (170)
Q Consensus        84 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (170)
                      .+..+++.+|++++|+|++++.++.....++..+.......+.|+++++||+|+.+..+.+++.+.+.........++++
T Consensus        75 ~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~  154 (174)
T cd04153          75 SWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQ  154 (174)
T ss_pred             HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEE
Confidence            99999999999999999999988888888888887655446799999999999987667777777665444444567899


Q ss_pred             eeeccCC
Q 030848          164 AVSGYDG  170 (170)
Q Consensus       164 ~~Sa~~g  170 (170)
                      +|||++|
T Consensus       155 ~~SA~~g  161 (174)
T cd04153         155 GCCALTG  161 (174)
T ss_pred             ecccCCC
Confidence            9999986

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04154 Arl2 Arl2 subfamily

Probab=99.97  E-value=1.4e-29  Score=175.42  Aligned_cols=154  Identities=42%  Similarity=0.715  Sum_probs=125.9

Q ss_pred             hhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHh
Q 030848           10 KYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYY   89 (170)
Q Consensus        10 ~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   89 (170)
                      ........++|+++|++|+|||||++++.+.       ....+.+|.+.....+...+..+.+||+||++.+...+..++
T Consensus         7 ~~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~-------~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~   79 (173)
T cd04154           7 KQKLKEREMRILILGLDNAGKTTILKKLLGE-------DIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYF   79 (173)
T ss_pred             hhhcCCCccEEEEECCCCCCHHHHHHHHccC-------CCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHh
Confidence            3444567799999999999999999999762       223445666666666677788999999999999988899999


Q ss_pred             hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +.+|++++|+|++++.+++....++..+.......+.|+++++||+|+.+....+++.+.++........++++++||++
T Consensus        80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  159 (173)
T cd04154          80 ESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVT  159 (173)
T ss_pred             CCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCC
Confidence            99999999999999999988888888886644446799999999999987777777777776444445678999999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       160 g  160 (173)
T cd04154         160 G  160 (173)
T ss_pred             C
Confidence            7

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.2e-29  Score=174.56  Aligned_cols=144  Identities=25%  Similarity=0.379  Sum_probs=126.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE--EE--ecCeEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE--VSNSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ...+||+++|++|||||+++.++..      +.+...+..|+++.+..  +.  .....+++|||+||++++.....|++
T Consensus        10 d~~~kvlliGDs~vGKt~~l~rf~d------~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyr   83 (207)
T KOG0078|consen   10 DYLFKLLLIGDSGVGKTCLLLRFSD------DSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYR   83 (207)
T ss_pred             ceEEEEEEECCCCCchhHhhhhhhh------ccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHh
Confidence            4568999999999999999999987      66677777888887663  33  34567999999999999999999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .++++++|||+++..+|+++..|+..+-.... ..+|+++|+||+|+..  .++.+..++.+.     ..+++|+|+|||
T Consensus        84 gA~gi~LvyDitne~Sfeni~~W~~~I~e~a~-~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~-----e~G~~F~EtSAk  157 (207)
T KOG0078|consen   84 GAMGILLVYDITNEKSFENIRNWIKNIDEHAS-DDVVKILVGNKCDLEEKRQVSKERGEALAR-----EYGIKFFETSAK  157 (207)
T ss_pred             hcCeeEEEEEccchHHHHHHHHHHHHHHhhCC-CCCcEEEeeccccccccccccHHHHHHHHH-----HhCCeEEEcccc
Confidence            99999999999999999999998888866544 6899999999999987  788888888888     778899999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       158 ~~  159 (207)
T KOG0078|consen  158 TN  159 (207)
T ss_pred             CC
Confidence            87

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.97  E-value=1.6e-29  Score=176.26  Aligned_cols=143  Identities=23%  Similarity=0.357  Sum_probs=115.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      ...+||+++|++|+|||||++++..      +.+...+.||++..+.   .++.....+.+|||+|++++..++..+++.
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~------~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~   76 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAK------DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD   76 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHh------CCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCC
Confidence            4678999999999999999999987      4555566667655433   233345679999999999999999999999


Q ss_pred             cCEEEEEEeCCCcccHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCccc--------------cCCHHHHHhHhCccccc
Q 030848           92 AHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKLD  156 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--------------~~~~~~~~~~~~~~~~~  156 (170)
                      +|++|+|||++++.+|+.+ ..|+..+....  ++.|+++|+||+|+.+              +.+.++..+.++     
T Consensus        77 ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~-----  149 (182)
T cd04172          77 SDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAK-----  149 (182)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHH-----
Confidence            9999999999999999997 67777776543  5789999999999853              356677777776     


Q ss_pred             cce-eEEEeeeccCC
Q 030848          157 ERV-CMFEAVSGYDG  170 (170)
Q Consensus       157 ~~~-~~~~~~Sa~~g  170 (170)
                      ... ++|+||||++|
T Consensus       150 ~~~~~~~~E~SAk~~  164 (182)
T cd04172         150 QIGAATYIECSALQS  164 (182)
T ss_pred             HcCCCEEEECCcCCC
Confidence            445 48999999986

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04121 Rab40 Rab40 subfamily

Probab=99.97  E-value=4.4e-29  Score=174.92  Aligned_cols=142  Identities=21%  Similarity=0.366  Sum_probs=116.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe--cCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      ..+||+++|+.|+|||||+.++..      +.+...+.++.+....  .+..  ....+.+|||+|++.+..++..+++.
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~------~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~   78 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQD------GSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRG   78 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcC
Confidence            458999999999999999999976      3333444455554432  2333  34779999999999999999999999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +|++|+|||++++.+|+.+..|+.++....  ++.|+++++||+|+..  ..+.+++.+.++     ...++|++|||++
T Consensus        79 ad~illVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a~-----~~~~~~~e~SAk~  151 (189)
T cd04121          79 AQGIILVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYAE-----RNGMTFFEVSPLC  151 (189)
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHHH-----HcCCEEEEecCCC
Confidence            999999999999999999999999986543  5899999999999975  556777777776     4567899999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       152 g  152 (189)
T cd04121         152 N  152 (189)
T ss_pred             C
Confidence            7

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=9.9e-29  Score=170.53  Aligned_cols=145  Identities=40%  Similarity=0.688  Sum_probs=120.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV   98 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   98 (170)
                      ||+++|.+|||||||++++.+      ... ..+.+|.+.....++..+..+.+||+||++.+...+..+++.+|++++|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~------~~~-~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V   73 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQ------DEF-MQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFV   73 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhc------CCC-CCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEE
Confidence            689999999999999999976      222 2356777777777788889999999999999988999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccc-ccceeEEEeeeccCC
Q 030848           99 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL-DERVCMFEAVSGYDG  170 (170)
Q Consensus        99 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~g  170 (170)
                      +|++++.++.+...++..+.......+.|+++++||+|+.+..+.+++.+.+..... ....+.+++|||++|
T Consensus        74 ~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  146 (169)
T cd04158          74 VDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSG  146 (169)
T ss_pred             EeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCC
Confidence            999999999999999999986654456899999999999887788888777753332 234568999999987

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.97  E-value=1e-28  Score=171.28  Aligned_cols=159  Identities=42%  Similarity=0.785  Sum_probs=140.7

Q ss_pred             hHHHHhhhcc-CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh
Q 030848            5 FYGLWKYIFT-KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS   83 (170)
Q Consensus         5 ~~~~~~~~~~-~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   83 (170)
                      ++.+++.... ++.++|+++|..||||||+++++..      + ......||.+.+...+...+..+.+||++|+..++.
T Consensus         1 ~~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~------~-~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~   73 (175)
T PF00025_consen    1 FSSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKN------G-EISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRP   73 (175)
T ss_dssp             HHHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHS------S-SEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGG
T ss_pred             CHHHHHHhcccCcEEEEEEECCCccchHHHHHHhhh------c-cccccCcccccccceeeeCcEEEEEEeccccccccc
Confidence            3556666665 7899999999999999999999975      2 122377899999999999999999999999999999


Q ss_pred             hHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccc-cceeEE
Q 030848           84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLD-ERVCMF  162 (170)
Q Consensus        84 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~  162 (170)
                      .|..+++++|++|||+|.++.+.+.+....+..++......+.|+++++||.|+++....+++.+.+....+. ...+.+
T Consensus        74 ~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v  153 (175)
T PF00025_consen   74 LWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSV  153 (175)
T ss_dssp             GGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEE
T ss_pred             cceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEE
Confidence            9999999999999999999999999999999999887666789999999999999999999999999877765 789999


Q ss_pred             EeeeccCC
Q 030848          163 EAVSGYDG  170 (170)
Q Consensus       163 ~~~Sa~~g  170 (170)
                      ++|||++|
T Consensus       154 ~~~sa~~g  161 (175)
T PF00025_consen  154 FSCSAKTG  161 (175)
T ss_dssp             EEEBTTTT
T ss_pred             EeeeccCC
Confidence            99999987

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=9.5e-30  Score=167.52  Aligned_cols=143  Identities=24%  Similarity=0.406  Sum_probs=126.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE----EEEecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      ..+||+++|++|+|||||+-++..      +..-+....|+++.++    .++++..++.||||+|+|+++.+.+.|++.
T Consensus        10 ~t~KiLlIGeSGVGKSSLllrFv~------~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRg   83 (209)
T KOG0080|consen   10 TTFKILLIGESGVGKSSLLLRFVS------NTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRG   83 (209)
T ss_pred             eeEEEEEEccCCccHHHHHHHHHh------cccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhcc
Confidence            458999999999999999999976      4444555555666654    566778899999999999999999999999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc--ccCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP--DAVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +.++|+|||++..++|..+..|..++-.+...+++-.++|+||+|..  +..+++|..++++     ...+.|+|||||+
T Consensus        84 aqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr-----~h~~LFiE~SAkt  158 (209)
T KOG0080|consen   84 AQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFAR-----KHRCLFIECSAKT  158 (209)
T ss_pred             CceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHH-----hhCcEEEEcchhh
Confidence            99999999999999999999999999888887888899999999998  4789999999998     8888999999986

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.97  E-value=2e-28  Score=171.17  Aligned_cols=162  Identities=35%  Similarity=0.520  Sum_probs=130.5

Q ss_pred             hhhhHHHHhhhcc-CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848            2 FSLFYGLWKYIFT-KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (170)
Q Consensus         2 ~~~~~~~~~~~~~-~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   80 (170)
                      |-+++++|.++-. ++.++|+++|.+|+|||||++++.+.      .. ..+.+|.+.....+...+..+.+||+||++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~------~~-~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~   73 (184)
T smart00178        1 FDWFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKND------RL-AQHQPTQHPTSEELAIGNIKFTTFDLGGHQQ   73 (184)
T ss_pred             ChHHHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcC------CC-cccCCccccceEEEEECCEEEEEEECCCCHH
Confidence            3478888884423 77899999999999999999999761      11 1223455555556677788999999999999


Q ss_pred             chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccc-----
Q 030848           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL-----  155 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~-----  155 (170)
                      +...+..+++.+|++++|+|++++.+++....++..+.......+.|+++++||+|++...+.+++.+.+.....     
T Consensus        74 ~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~  153 (184)
T smart00178       74 ARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKG  153 (184)
T ss_pred             HHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCccccccc
Confidence            999999999999999999999999989888888888776544467899999999999888888898888874432     


Q ss_pred             --ccceeEEEeeeccCC
Q 030848          156 --DERVCMFEAVSGYDG  170 (170)
Q Consensus       156 --~~~~~~~~~~Sa~~g  170 (170)
                        ..+...+++|||++|
T Consensus       154 ~~~~~~~~i~~~Sa~~~  170 (184)
T smart00178      154 KVGVRPLEVFMCSVVRR  170 (184)
T ss_pred             ccCCceeEEEEeecccC
Confidence              125778999999986

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.97  E-value=1.3e-28  Score=169.35  Aligned_cols=152  Identities=61%  Similarity=1.037  Sum_probs=125.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV   98 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   98 (170)
                      +|+++|++|+|||||++++........+.....+.++.+.....+.+.+..+.+|||||++.+...+..+++.+|++++|
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v   80 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV   80 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence            58999999999999999997644333344455667788888877888889999999999999999899999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccc--cccceeEEEeeeccCC
Q 030848           99 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKK--LDERVCMFEAVSGYDG  170 (170)
Q Consensus        99 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~g  170 (170)
                      +|++++.++.....++..+.......+.|+++++||+|+++....++..+.+....  .....++++++||++|
T Consensus        81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  154 (167)
T cd04160          81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG  154 (167)
T ss_pred             EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence            99999888888888888887765556799999999999988777777777665332  2335678999999987

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04131 Rnd Rnd subfamily

Probab=99.96  E-value=4.2e-29  Score=173.70  Aligned_cols=141  Identities=22%  Similarity=0.355  Sum_probs=112.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      ++||+++|++|+|||||++++..      +.+...+.||++..+.   .++.....+.+|||+|++.+......+++.+|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~   74 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAK------DCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSD   74 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHh------CcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCC
Confidence            47999999999999999999987      4455556666655432   23334577999999999999888899999999


Q ss_pred             EEEEEEeCCCcccHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCccc--------------cCCHHHHHhHhCccccccc
Q 030848           94 AVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKLDER  158 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--------------~~~~~~~~~~~~~~~~~~~  158 (170)
                      ++|+|||++++.+|+.+ ..|+..+....  ++.|+++|+||+|+.+              +.+.++..+.++     ..
T Consensus        75 ~~ilvfdit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~-----~~  147 (178)
T cd04131          75 AVLICFDISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAK-----QL  147 (178)
T ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHH-----Hh
Confidence            99999999999999996 67777776543  5789999999999953              255666776666     44


Q ss_pred             ee-EEEeeeccCC
Q 030848          159 VC-MFEAVSGYDG  170 (170)
Q Consensus       159 ~~-~~~~~Sa~~g  170 (170)
                      ++ +|+||||++|
T Consensus       148 ~~~~~~E~SA~~~  160 (178)
T cd04131         148 GAEIYLECSAFTS  160 (178)
T ss_pred             CCCEEEECccCcC
Confidence            44 8999999986

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.96  E-value=2.2e-28  Score=168.50  Aligned_cols=145  Identities=37%  Similarity=0.742  Sum_probs=122.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV   98 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   98 (170)
                      +|+++|++|||||||++++.+      . ....+.+|.+.....+...+..+.+||+||++.+...+..+++.+|++++|
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~------~-~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V   73 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQG------E-IPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFV   73 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhC------C-CCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEE
Confidence            479999999999999999975      2 334556777777777888889999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccc---ccceeEEEeeeccCC
Q 030848           99 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL---DERVCMFEAVSGYDG  170 (170)
Q Consensus        99 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~g  170 (170)
                      +|++++.+++++..++..+.......+.|+++++||+|+++..+..++.+.+....+   ....+++++|||++|
T Consensus        74 ~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g  148 (167)
T cd04161          74 VDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEG  148 (167)
T ss_pred             EECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeC
Confidence            999999999999999998876654467899999999999988878887777664443   234678999999986

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.96  E-value=8.9e-29  Score=171.26  Aligned_cols=143  Identities=20%  Similarity=0.285  Sum_probs=113.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEE--ecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      .+||+++|.+|+|||||++++..      +.....+.++++..+. .+.  .....+.+|||||++++..++..+++.+|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d   75 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFIS------HSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGE   75 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHh------CCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCC
Confidence            47999999999999999999986      4444455566654333 233  33467999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++|+|||++++.+++.+..|+..+......++.|+++|+||+|+.+  ..+.++..+..+     ...++|++|||++|
T Consensus        76 ~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~-----~~~~~~~e~Sa~~~  149 (172)
T cd04141          76 GFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAR-----EFNCPFFETSAALR  149 (172)
T ss_pred             EEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHH-----HhCCEEEEEecCCC
Confidence            9999999999999999988877776544446799999999999865  345556655554     45679999999986

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04120 Rab12 Rab12 subfamily

Probab=99.96  E-value=2e-28  Score=173.19  Aligned_cols=142  Identities=24%  Similarity=0.399  Sum_probs=112.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEec--CeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      +.|+++|+.|+|||||++++..      +.+...+.+|++..+.  .+...  ...+.+|||+|++.+..++..+++.+|
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~------~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad   74 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTD------DTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK   74 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHh------CCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCC
Confidence            3689999999999999999976      4555566677765543  34444  477999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++|+|||++++.+|+.+..|+..+... ...+.|+++|+||+|+.+  +....+..+.++.    ...+.|++|||++|
T Consensus        75 ~iIlVfDvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~----~~~~~~~etSAktg  148 (202)
T cd04120          75 GIILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKFAQQ----ITGMRFCEASAKDN  148 (202)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHh----cCCCEEEEecCCCC
Confidence            999999999999999999888766543 336799999999999964  4455555555441    12467999999987

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04133 Rop_like Rop subfamily

Probab=99.96  E-value=6.6e-29  Score=172.24  Aligned_cols=140  Identities=19%  Similarity=0.295  Sum_probs=112.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   94 (170)
                      +|++++|++|+|||||+.++..      +.+...+.+|++..+.   .++....++.+|||+|++++..++..+++.+++
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~------~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~   75 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTS------NKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADV   75 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhc------CCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcE
Confidence            6899999999999999999986      5555566677765443   223345789999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCcccc------------CCHHHHHhHhCcccccccee-
Q 030848           95 VVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPDA------------VSADELARYLDLKKLDERVC-  160 (170)
Q Consensus        95 ~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~------------~~~~~~~~~~~~~~~~~~~~-  160 (170)
                      +|+|||++++.+|+.+ ..|+..+....  ++.|+++|+||+|+.+.            .+.++..+..+     ..++ 
T Consensus        76 ~ilvyd~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~-----~~~~~  148 (176)
T cd04133          76 FVLAFSLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRK-----QIGAA  148 (176)
T ss_pred             EEEEEEcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHH-----HcCCC
Confidence            9999999999999998 57888775543  57999999999999652            45556666555     3444 


Q ss_pred             EEEeeeccCC
Q 030848          161 MFEAVSGYDG  170 (170)
Q Consensus       161 ~~~~~Sa~~g  170 (170)
                      +|+||||++|
T Consensus       149 ~~~E~SAk~~  158 (176)
T cd04133         149 AYIECSSKTQ  158 (176)
T ss_pred             EEEECCCCcc
Confidence            6999999987

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.7e-29  Score=167.59  Aligned_cols=145  Identities=26%  Similarity=0.375  Sum_probs=126.2

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE----EEEecCeEEEEEEcCCCCcchhhHHHHh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYY   89 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~~~~~   89 (170)
                      ....+|+.++|+.|+|||+|+.++..      ..+.+....|+++.+.    .++.+..++++|||+|++.+++....|+
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~------krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syY   76 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTD------KRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYY   76 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhc------cCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHh
Confidence            34678999999999999999999976      4555566677777654    4556678899999999999999999999


Q ss_pred             hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeec
Q 030848           90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSG  167 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  167 (170)
                      +.+.++|+|||+++.++|..+..|+..+.+.. .++..+++++||+||..  .++.+|.+++++     .....|+++||
T Consensus        77 r~a~GalLVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~-----ehgLifmETSa  150 (216)
T KOG0098|consen   77 RGAAGALLVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEGEAFAR-----EHGLIFMETSA  150 (216)
T ss_pred             ccCcceEEEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHHHHHHH-----HcCceeehhhh
Confidence            99999999999999999999999999998765 37889999999999986  788999999998     56678999999


Q ss_pred             cCC
Q 030848          168 YDG  170 (170)
Q Consensus       168 ~~g  170 (170)
                      ++|
T Consensus       151 kt~  153 (216)
T KOG0098|consen  151 KTA  153 (216)
T ss_pred             hhh
Confidence            985

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=6.5e-29  Score=167.61  Aligned_cols=163  Identities=39%  Similarity=0.713  Sum_probs=152.0

Q ss_pred             ChhhhHHHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848            1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (170)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   80 (170)
                      ||.+++.++...+.+.+.+|+++|--++||||++.++..      +...+. .||++.+...+.+++.++.+||..|++.
T Consensus         1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~------~E~vtt-vPTiGfnVE~v~ykn~~f~vWDvGGq~k   73 (181)
T KOG0070|consen    1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKL------GEIVTT-VPTIGFNVETVEYKNISFTVWDVGGQEK   73 (181)
T ss_pred             CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeecc------CCcccC-CCccccceeEEEEcceEEEEEecCCCcc
Confidence            899999999999999999999999999999999999965      344444 7999999999999999999999999999


Q ss_pred             chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccccccee
Q 030848           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC  160 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  160 (170)
                      ++..|..|+++++++|+|+|.++.+.+.++++-+..++........|++++.||.|++++.+..++.+.+....+..+.+
T Consensus        74 ~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w  153 (181)
T KOG0070|consen   74 LRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNW  153 (181)
T ss_pred             cccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCc
Confidence            99999999999999999999999999999999999998887777899999999999999999999999999888888999


Q ss_pred             EEEeeeccCC
Q 030848          161 MFEAVSGYDG  170 (170)
Q Consensus       161 ~~~~~Sa~~g  170 (170)
                      .+..|+|.+|
T Consensus       154 ~iq~~~a~~G  163 (181)
T KOG0070|consen  154 HIQSTCAISG  163 (181)
T ss_pred             EEeecccccc
Confidence            9999999887

>cd01875 RhoG RhoG subfamily

Probab=99.96  E-value=1.4e-28  Score=172.95  Aligned_cols=142  Identities=20%  Similarity=0.333  Sum_probs=109.3

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      ..+||+++|+.|+|||||+.++..      +.+...+.||++..+.   .++.....+.+|||+|++.+..++..+++.+
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a   75 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTT------NAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQT   75 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHh------CCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCC
Confidence            458999999999999999999976      4555566677765443   2334457799999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCccccC--------------CHHHHHhHhCcccccc
Q 030848           93 HAVVFVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPDAV--------------SADELARYLDLKKLDE  157 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~ii~v~nK~D~~~~~--------------~~~~~~~~~~~~~~~~  157 (170)
                      |++|+|||++++.+|+.+.. |...+....  ++.|+++|+||.|+.+..              ..++..+.++     .
T Consensus        76 ~~~ilvydit~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~-----~  148 (191)
T cd01875          76 NVFIICFSIASPSSYENVRHKWHPEVCHHC--PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAK-----Q  148 (191)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHH-----H
Confidence            99999999999999999974 655554432  579999999999996532              2222333322     2


Q ss_pred             ce-eEEEeeeccCC
Q 030848          158 RV-CMFEAVSGYDG  170 (170)
Q Consensus       158 ~~-~~~~~~Sa~~g  170 (170)
                      .. ++|++|||++|
T Consensus       149 ~~~~~~~e~SAk~g  162 (191)
T cd01875         149 IHAVKYLECSALNQ  162 (191)
T ss_pred             cCCcEEEEeCCCCC
Confidence            33 68999999986

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04122 Rab14 Rab14 subfamily

Probab=99.96  E-value=2.8e-28  Score=167.68  Aligned_cols=142  Identities=27%  Similarity=0.407  Sum_probs=113.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe--cCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      .+||+++|++|+|||||++++..      +.....+.++++....  .+..  ....+.+||+||++.+...+..+++.+
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   75 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTE------KKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGA   75 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc------CCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence            47999999999999999999976      3444455556555443  2233  346789999999999999899999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      |++|+|||++++.+++.+..|+..+.... .++.|+++++||+|+.+.  ...++..+.++     ...+++++|||++|
T Consensus        76 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~  149 (166)
T cd04122          76 AGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQFAD-----ENGLLFLECSAKTG  149 (166)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHHHHHH-----HcCCEEEEEECCCC
Confidence            99999999999999999999988875543 357899999999999763  45566666655     34568999999987

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.96  E-value=2.5e-28  Score=175.49  Aligned_cols=144  Identities=21%  Similarity=0.352  Sum_probs=115.2

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHhh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      +...+||+++|++|+|||||++++..      +.+...+.||++..+.   .++.....+.||||+|++.+......+++
T Consensus        10 ~~~~~KIvvvGd~~VGKTsLi~r~~~------~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~   83 (232)
T cd04174          10 LVMRCKLVLVGDVQCGKTAMLQVLAK------DCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYS   83 (232)
T ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhc------CCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcC
Confidence            34678999999999999999999976      4455566667655443   22334577999999999999999999999


Q ss_pred             ccCEEEEEEeCCCcccHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCccc--------------cCCHHHHHhHhCcccc
Q 030848           91 EAHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKL  155 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--------------~~~~~~~~~~~~~~~~  155 (170)
                      .+|++|+|||++++.+|+.+ ..|+..+....  ++.|+++|+||+|+.+              ..+.++..+.++    
T Consensus        84 ~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~----  157 (232)
T cd04174          84 DSDAVLLCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAK----  157 (232)
T ss_pred             CCcEEEEEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHH----
Confidence            99999999999999999875 67877776543  5789999999999863              356667777776    


Q ss_pred             cccee-EEEeeeccCC
Q 030848          156 DERVC-MFEAVSGYDG  170 (170)
Q Consensus       156 ~~~~~-~~~~~Sa~~g  170 (170)
                       ..++ +|++|||++|
T Consensus       158 -~~~~~~~~EtSAktg  172 (232)
T cd04174         158 -QLGAEVYLECSAFTS  172 (232)
T ss_pred             -HcCCCEEEEccCCcC
Confidence             4455 6999999986

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.96  E-value=8e-28  Score=165.26  Aligned_cols=142  Identities=35%  Similarity=0.618  Sum_probs=117.4

Q ss_pred             EEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEE
Q 030848           20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI   99 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   99 (170)
                      |+++|++|+|||||++++..      +.....+.||.+.....++..+..+.+||+||++.+...+..+++.+|++|+|+
T Consensus         2 i~ivG~~~vGKTsli~~~~~------~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~   75 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSS------ERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVV   75 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhc------CCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence            78999999999999999986      333455667777766667788899999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccc-ccceeEEEeeeccC
Q 030848          100 DAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL-DERVCMFEAVSGYD  169 (170)
Q Consensus       100 d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~  169 (170)
                      |++++.++.....|+..+....  ++.|+++++||+|+.+.....++.+.+....+ ....+++++|||++
T Consensus        76 D~t~~~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~  144 (164)
T cd04162          76 DSADSERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDD  144 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecC
Confidence            9999999998888888886543  68999999999999877666666555543333 45678899999987

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04136 Rap_like Rap-like subfamily

Probab=99.96  E-value=3.1e-28  Score=166.67  Aligned_cols=142  Identities=26%  Similarity=0.422  Sum_probs=109.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE-EEEEec--CeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~   94 (170)
                      +||+++|++|+|||||++++..      +.....+.+|+.... ..+...  ...+.+|||||++++...+..+++.+|+
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   75 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQ------GIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQG   75 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh------CCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCE
Confidence            7999999999999999999976      333344445544222 223333  4568899999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +++|||++++.+++....|+..+.......+.|+++++||+|+.+  ....++..+..+     ....+++++||++|
T Consensus        76 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  148 (163)
T cd04136          76 FVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALAR-----QWGCPFYETSAKSK  148 (163)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHH-----HcCCeEEEecCCCC
Confidence            999999999999999999988887655556799999999999965  233333333333     22378999999986

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04127 Rab27A Rab27a subfamily

Probab=99.96  E-value=3.7e-28  Score=169.05  Aligned_cols=144  Identities=21%  Similarity=0.353  Sum_probs=115.3

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE--EEe------------cCeEEEEEEcCCCCcc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV------------SNSKLVFWDLGGQPGL   81 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------~~~~~~i~D~~G~~~~   81 (170)
                      ..+||+++|++|+|||||++++..      +.....+.++++.....  +..            ....+.+||+||++.+
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~   76 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTD------NKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERF   76 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhc------CCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHH
Confidence            458999999999999999999976      44445556666654432  222            2367999999999999


Q ss_pred             hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccce
Q 030848           82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERV  159 (170)
Q Consensus        82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~  159 (170)
                      ...+..+++.+|++++|||++++.++..+..|+..+......++.|+++|+||+|+.+  ....++..+..+     ...
T Consensus        77 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~-----~~~  151 (180)
T cd04127          77 RSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALAD-----KYG  151 (180)
T ss_pred             HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHH-----HcC
Confidence            9999999999999999999999999999999998887654446789999999999975  345566666665     345


Q ss_pred             eEEEeeeccCC
Q 030848          160 CMFEAVSGYDG  170 (170)
Q Consensus       160 ~~~~~~Sa~~g  170 (170)
                      ++++++||++|
T Consensus       152 ~~~~e~Sak~~  162 (180)
T cd04127         152 IPYFETSAATG  162 (180)
T ss_pred             CeEEEEeCCCC
Confidence            68999999986

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd00879 Sar1 Sar1 subfamily

Probab=99.96  E-value=1.5e-27  Score=167.43  Aligned_cols=162  Identities=38%  Similarity=0.591  Sum_probs=127.6

Q ss_pred             hhhhHHHHhhhc-cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848            2 FSLFYGLWKYIF-TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (170)
Q Consensus         2 ~~~~~~~~~~~~-~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   80 (170)
                      +-++++.++... .....+|+++|++|||||||++++.+.      .. ..+.++.+.....+...+..+.+||+||++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~------~~-~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~   75 (190)
T cd00879           3 FDWFYNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDD------RL-AQHVPTLHPTSEELTIGNIKFKTFDLGGHEQ   75 (190)
T ss_pred             HHHHHHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcC------CC-cccCCccCcceEEEEECCEEEEEEECCCCHH
Confidence            334444444433 456799999999999999999999761      11 2344555555566777788999999999998


Q ss_pred             chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccc-----
Q 030848           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL-----  155 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~-----  155 (170)
                      +...+..+++.++++++|+|+++..+++....++..+.......+.|+++++||+|+.+....+++.+.+.....     
T Consensus        76 ~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  155 (190)
T cd00879          76 ARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKG  155 (190)
T ss_pred             HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCccccccccc
Confidence            888888999999999999999999889888888888877655567999999999999887888888888764322     


Q ss_pred             ------ccceeEEEeeeccCC
Q 030848          156 ------DERVCMFEAVSGYDG  170 (170)
Q Consensus       156 ------~~~~~~~~~~Sa~~g  170 (170)
                            ....+++++|||++|
T Consensus       156 ~~~~~~~~~~~~~~~~Sa~~~  176 (190)
T cd00879         156 VSLKVSGIRPIEVFMCSVVKR  176 (190)
T ss_pred             ccccccCceeEEEEEeEecCC
Confidence                  124578999999987

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04175 Rap1 Rap1 subgroup

Probab=99.96  E-value=3.1e-28  Score=167.07  Aligned_cols=143  Identities=24%  Similarity=0.421  Sum_probs=110.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEe--cCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      ++||+++|.+|+|||||++++..      +.....+.+++..... .+..  ....+.+|||||++.+...+..+++.+|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   74 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQ------GIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQ   74 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHh------CCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCC
Confidence            47999999999999999999975      3333344455543322 2333  3456889999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++++|||++++.+++....|+..+.......+.|+++++||+|+.+.  ...++..+..+     ...++++++||++|
T Consensus        75 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  148 (164)
T cd04175          75 GFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR-----QWGCAFLETSAKAK  148 (164)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHH-----HhCCEEEEeeCCCC
Confidence            99999999999999999999999877655578999999999999753  23344444433     33468999999986

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=8.8e-28  Score=164.24  Aligned_cols=147  Identities=35%  Similarity=0.629  Sum_probs=116.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV   98 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   98 (170)
                      +|+++|++|+|||||++++.+..     .....+.||.+.....+...+..+.+|||||++.+...+..+++.+|++|+|
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~-----~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   75 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPEN-----AQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFV   75 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccC-----CCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEE
Confidence            58999999999999999997611     1233455677766656667788999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           99 IDAACPSRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        99 ~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +|++++.++.....++..+.....  ..+.|+++++||+|+.+....++..+.++........++++++||++|
T Consensus        76 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g  149 (162)
T cd04157          76 IDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTG  149 (162)
T ss_pred             EeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCC
Confidence            999999988888888877765432  257999999999999876666666666553322334567999999986

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>PTZ00369 Ras-like protein; Provisional

Probab=99.96  E-value=4.1e-28  Score=170.32  Aligned_cols=145  Identities=23%  Similarity=0.301  Sum_probs=114.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      ...+||+++|++|+|||||++++..      +.....+.+|.+..+.   .++.....+.+|||||++++..++..+++.
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~   76 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQ------NHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRT   76 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc------CCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhc
Confidence            3568999999999999999999986      3333445555554433   234445678899999999999999999999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      ++++++|+|++++.+++....|+..+......++.|+++++||+|+.+.  ....+..+...     ...++++++||++
T Consensus        77 ~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~-----~~~~~~~e~Sak~  151 (189)
T PTZ00369         77 GQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAK-----SFGIPFLETSAKQ  151 (189)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-----HhCCEEEEeeCCC
Confidence            9999999999999999999999988877655568899999999998653  34444444443     3346899999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       152 ~  152 (189)
T PTZ00369        152 R  152 (189)
T ss_pred             C
Confidence            6

>cd04151 Arl1 Arl1 subfamily

Probab=99.96  E-value=9e-28  Score=163.91  Aligned_cols=145  Identities=39%  Similarity=0.717  Sum_probs=114.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV   98 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   98 (170)
                      ||+++|++++|||||++++..      +... ...++++.....+++.+..+.+|||||++.+...+..+++.++++|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v   73 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQL------GEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYV   73 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHcc------CCCc-CcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence            689999999999999999965      1111 234666666666777889999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           99 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        99 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +|++++.++.....++..+.......+.|+++++||+|+.++....++.+.+..........+++++||++|
T Consensus        74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~  145 (158)
T cd04151          74 VDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKG  145 (158)
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCC
Confidence            999998888777777766655444457899999999999876666666665543333344578999999986

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.96  E-value=2.7e-28  Score=174.46  Aligned_cols=142  Identities=19%  Similarity=0.286  Sum_probs=109.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      ++||+++|++|+|||||++++..      +.+...+.||+...+.   .++.....+.+|||+|++.+...+..+++.+|
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~------~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d   74 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAK------DAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSD   74 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHc------CCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCC
Confidence            37999999999999999999986      4455566666665543   23345577999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--------------CCHHHHHhHhCccccccce
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLDERV  159 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~  159 (170)
                      ++|+|||++++.+++.+..+|........ ++.|+++|+||+|+.+.              .+.++..+..+     ..+
T Consensus        75 ~illvfdis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak-----~~~  148 (222)
T cd04173          75 AVLICFDISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAK-----QVG  148 (222)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHH-----HcC
Confidence            99999999999999998655544433322 67999999999999652              33344444444     333


Q ss_pred             -eEEEeeeccCC
Q 030848          160 -CMFEAVSGYDG  170 (170)
Q Consensus       160 -~~~~~~Sa~~g  170 (170)
                       ++|+||||++|
T Consensus       149 ~~~y~E~SAk~~  160 (222)
T cd04173         149 AVSYVECSSRSS  160 (222)
T ss_pred             CCEEEEcCCCcC
Confidence             48999999974

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.96  E-value=5.5e-28  Score=171.17  Aligned_cols=143  Identities=25%  Similarity=0.405  Sum_probs=114.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe---cCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV---SNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      +||+++|++|+|||||++++..      +.....+.+|++..+.  .+..   ....+.+|||||++.+...+..+++++
T Consensus         1 ~KivivG~~~vGKTsli~~l~~------~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a   74 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVH------GIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGA   74 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCC
Confidence            5899999999999999999986      4444556677765433  2333   356799999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCC---CCCCCcEEEEeeCCCcc--ccCCHHHHHhHhCccccccceeEEEeeec
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNE---DLQGAPLLILANKQDLP--DAVSADELARYLDLKKLDERVCMFEAVSG  167 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~ii~v~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  167 (170)
                      +++|+|||++++.+++.+..|+..+....   ...+.|+++|+||+|+.  +....+++.+.++...    ..+++++||
T Consensus        75 ~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~e~Sa  150 (201)
T cd04107          75 VGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENG----FIGWFETSA  150 (201)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcC----CceEEEEeC
Confidence            99999999999999999998888775432   23578999999999997  4567777777776222    258999999


Q ss_pred             cCC
Q 030848          168 YDG  170 (170)
Q Consensus       168 ~~g  170 (170)
                      ++|
T Consensus       151 k~~  153 (201)
T cd04107         151 KEG  153 (201)
T ss_pred             CCC
Confidence            986

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.96  E-value=1.4e-27  Score=162.88  Aligned_cols=145  Identities=43%  Similarity=0.755  Sum_probs=123.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV   98 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   98 (170)
                      ||+++|.+|+|||||++++.+.      . .....++.+.....+.+.+..+.+||+||++.+...+..+++.+|++++|
T Consensus         1 ki~iiG~~~~GKssli~~~~~~------~-~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   73 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLG------E-VVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFV   73 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcC------C-CCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEE
Confidence            6899999999999999999872      1 23456677777777888889999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           99 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        99 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +|++++.++.....++..+.......+.|+++++||+|+......++..+.+.........++++++||++|
T Consensus        74 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  145 (158)
T cd00878          74 VDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTG  145 (158)
T ss_pred             EECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCC
Confidence            999999999999999888877655568999999999999887777788777765444456789999999986

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.96  E-value=6.3e-28  Score=164.69  Aligned_cols=143  Identities=21%  Similarity=0.304  Sum_probs=111.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEec--CeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      ++||+++|++|+|||||++++.+      +.....+.++.+.... .+...  ...+.+|||||++++..++..+++.++
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~   74 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQ------NHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE   74 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHh------CCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCC
Confidence            36899999999999999999986      3333344455443322 23333  356889999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++++|+|+++..+++....|+..+.......+.|+++++||+|+.+ .....+..+...     ...++++++||++|
T Consensus        75 ~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  147 (162)
T cd04138          75 GFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAK-----SYGIPYIETSAKTR  147 (162)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHH-----HhCCeEEEecCCCC
Confidence            9999999999999999988888887765556889999999999976 334445555544     34568999999986

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04126 Rab20 Rab20 subfamily

Probab=99.96  E-value=9.9e-28  Score=171.43  Aligned_cols=145  Identities=21%  Similarity=0.277  Sum_probs=114.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEE
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF   97 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   97 (170)
                      +||+++|.+|+|||||++++..      +.+.. ..+|++..+.........+.+|||+|++.+...+..+++.+|++|+
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~------~~f~~-~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~Il   73 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYME------RRFKD-TVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVIL   73 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhc------CCCCC-CCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEE
Confidence            5899999999999999999976      33332 4567776666566667889999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc---------------------cCCHHHHHhHhCccc--
Q 030848           98 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD---------------------AVSADELARYLDLKK--  154 (170)
Q Consensus        98 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~---------------------~~~~~~~~~~~~~~~--  154 (170)
                      |||++++.+|+.+..|+..+.... .++.|+++|+||+|+.+                     ..+.++..+.++...  
T Consensus        74 V~Dvt~~~Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~  152 (220)
T cd04126          74 TYDVSNVQSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKY  152 (220)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcc
Confidence            999999999999999988887643 35789999999999864                     334555555554211  


Q ss_pred             -------cccceeEEEeeeccCC
Q 030848          155 -------LDERVCMFEAVSGYDG  170 (170)
Q Consensus       155 -------~~~~~~~~~~~Sa~~g  170 (170)
                             .....++|+||||++|
T Consensus       153 ~~~~~~~~~~~~~~~~E~SA~tg  175 (220)
T cd04126         153 KMLDEDLSPAAEKMCFETSAKTG  175 (220)
T ss_pred             ccccccccccccceEEEeeCCCC
Confidence                   0112368999999987

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.96  E-value=6.7e-28  Score=165.95  Aligned_cols=140  Identities=17%  Similarity=0.384  Sum_probs=111.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe----cCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      +||+++|++|+|||||++++..      +.....+.++.+........    ....+.+|||+|++.+...+..+++.+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   74 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLT------GEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQ   74 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCC
Confidence            4899999999999999999975      33444556777666554433    3467999999999988888888999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++|+|+|++++.+++.+..|+..+.....  +.|+++++||+|+.+.....+..+..+     ...++++++||++|
T Consensus        75 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~piiiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~  144 (166)
T cd00877          75 CAIIMFDVTSRVTYKNVPNWHRDLVRVCG--NIPIVLCGNKVDIKDRKVKAKQITFHR-----KKNLQYYEISAKSN  144 (166)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCcEEEEEEchhcccccCCHHHHHHHH-----HcCCEEEEEeCCCC
Confidence            99999999999999999999888876543  899999999999975443333333333     45678999999987

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.96  E-value=8.4e-28  Score=165.00  Aligned_cols=142  Identities=23%  Similarity=0.451  Sum_probs=113.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EE--EecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RI--EVSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      +||+++|++|+|||||++++.+      +.....+.++.+....  .+  +.....+.+|||||++.+...+..+++.++
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   74 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCE------GRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQ   74 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCC
Confidence            5899999999999999999987      4444456666665432  23  334578999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCC----CCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeec
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDL----QGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSG  167 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  167 (170)
                      ++|+|+|++++.+++....|...+......    .+.|+++++||+|+.+  ....++..+...     ...++++++||
T Consensus        75 ~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa  149 (168)
T cd04119          75 GVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE-----SKGFKYFETSA  149 (168)
T ss_pred             EEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHH-----HcCCeEEEEEC
Confidence            999999999999999999999888766542    5689999999999973  345555555544     34468999999


Q ss_pred             cCC
Q 030848          168 YDG  170 (170)
Q Consensus       168 ~~g  170 (170)
                      ++|
T Consensus       150 ~~~  152 (168)
T cd04119         150 CTG  152 (168)
T ss_pred             CCC
Confidence            986

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.96  E-value=8.8e-28  Score=166.70  Aligned_cols=141  Identities=21%  Similarity=0.326  Sum_probs=107.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEecC--eEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~   94 (170)
                      +||+++|++|+|||||++++..      +.+.+.+.||++..+. .+...+  ..+.+|||+|++.+...+..+++.+|+
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~------~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~   75 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTT------NKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV   75 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCE
Confidence            6899999999999999999986      4455566677765443 333333  678999999999999888889999999


Q ss_pred             EEEEEeCCCcccHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCccccC--------------CHHHHHhHhCccccccce
Q 030848           95 VVFVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPDAV--------------SADELARYLDLKKLDERV  159 (170)
Q Consensus        95 ~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~ii~v~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~  159 (170)
                      +|+|||++++.+++.+.. |...+....  ++.|+++|+||+|+.+..              ..++..+..+    ....
T Consensus        76 ~ilv~d~~~~~s~~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~----~~~~  149 (175)
T cd01874          76 FLVCFSVVSPSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLAR----DLKA  149 (175)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHH----HhCC
Confidence            999999999999999875 666664432  578999999999986531              2222222322    1223


Q ss_pred             eEEEeeeccCC
Q 030848          160 CMFEAVSGYDG  170 (170)
Q Consensus       160 ~~~~~~Sa~~g  170 (170)
                      ++|++|||++|
T Consensus       150 ~~~~e~SA~tg  160 (175)
T cd01874         150 VKYVECSALTQ  160 (175)
T ss_pred             cEEEEecCCCC
Confidence            68999999987

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.96  E-value=1.2e-27  Score=163.91  Aligned_cols=143  Identities=20%  Similarity=0.294  Sum_probs=110.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-E--EEecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-R--IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      .+||+++|++|+|||||++++.+      +.....+.++...... .  ++.....+.+|||||++++..++..+++.+|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   75 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQ------SYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGE   75 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHh------CCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCC
Confidence            58999999999999999999976      2223334444443222 2  3333467899999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++++|+|++++.+++....|+..+.......+.|+++++||+|+...  ...++..+..+     ...++++++||++|
T Consensus        76 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  149 (164)
T cd04145          76 GFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELAR-----KLKIPYIETSAKDR  149 (164)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHH-----HcCCcEEEeeCCCC
Confidence            99999999999999999999988877655567899999999999763  23444444444     33458999999986

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4.4e-29  Score=166.28  Aligned_cols=170  Identities=56%  Similarity=0.923  Sum_probs=152.3

Q ss_pred             ChhhhHHHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcc-cCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC
Q 030848            1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP   79 (170)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   79 (170)
                      |++|.+++|.+++++..+.+++.|..++|||||+.+.-.... +..+..+....+|.+.+...+.+.+..+.+||..|++
T Consensus         1 m~tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe   80 (197)
T KOG0076|consen    1 MFTLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE   80 (197)
T ss_pred             ChhHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH
Confidence            999999999999999999999999999999999998855433 3334556788899999999999999999999999999


Q ss_pred             cchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC-ccccccc
Q 030848           80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD-LKKLDER  158 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~-~~~~~~~  158 (170)
                      ..+++|..|+..+|++|+++|+++++.++.....+..+...-...+.|+++..||.|+.+.....++...+. ......+
T Consensus        81 ~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~r  160 (197)
T KOG0076|consen   81 SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRR  160 (197)
T ss_pred             HHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCc
Confidence            999999999999999999999999999999999998888776667899999999999999988888888887 4555677


Q ss_pred             eeEEEeeeccCC
Q 030848          159 VCMFEAVSGYDG  170 (170)
Q Consensus       159 ~~~~~~~Sa~~g  170 (170)
                      ..++.++||.+|
T Consensus       161 d~~~~pvSal~g  172 (197)
T KOG0076|consen  161 DNPFQPVSALTG  172 (197)
T ss_pred             cCccccchhhhc
Confidence            889999999876

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.7e-27  Score=153.62  Aligned_cols=163  Identities=36%  Similarity=0.678  Sum_probs=151.3

Q ss_pred             ChhhhHHHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848            1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (170)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   80 (170)
                      ||-.++.++++.+..++++|+++|-.++||||++..+..       ..+....||++.++..+++++..+.+||++|++.
T Consensus         1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl-------~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~   73 (180)
T KOG0071|consen    1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKL-------GQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDK   73 (180)
T ss_pred             CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhc-------CCCcccccccceeEEEEEeeeeEEeeeeccCchh
Confidence            788889999999999999999999999999999999964       2334566899999999999999999999999999


Q ss_pred             chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccccccee
Q 030848           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC  160 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  160 (170)
                      ++..|..|+..+.++|+|+|..+....++++.-++++++.....+.++++..||.|++++-.++|+..+++...++.+.+
T Consensus        74 iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W  153 (180)
T KOG0071|consen   74 IRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNW  153 (180)
T ss_pred             hhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCcc
Confidence            99999999999999999999999999999999999999988778899999999999999999999999999888999999


Q ss_pred             EEEeeeccCC
Q 030848          161 MFEAVSGYDG  170 (170)
Q Consensus       161 ~~~~~Sa~~g  170 (170)
                      -+.++||.+|
T Consensus       154 ~vqp~~a~~g  163 (180)
T KOG0071|consen  154 YVQPSCALSG  163 (180)
T ss_pred             Eeeccccccc
Confidence            9999999876

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.96  E-value=2.6e-27  Score=156.36  Aligned_cols=162  Identities=40%  Similarity=0.672  Sum_probs=138.5

Q ss_pred             ChhhhHHHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848            1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (170)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   80 (170)
                      || +.+=+.+.-.+..+++|+++|..||||||+++++.+       ...+...||.+.+.....+++..+++||.+||..
T Consensus         1 mg-~lsilrk~k~kerE~riLiLGLdNsGKTti~~kl~~-------~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~   72 (185)
T KOG0073|consen    1 MG-LLSILRKQKLKEREVRILILGLDNSGKTTIVKKLLG-------EDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKT   72 (185)
T ss_pred             Cc-HHHHHHHHHhhhheeEEEEEecCCCCchhHHHHhcC-------CCccccCCccceeeEEEEecceEEEEEEcCCcch
Confidence            44 333333333345699999999999999999999975       3366788999999999999999999999999999


Q ss_pred             chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccc-ccce
Q 030848           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL-DERV  159 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~-~~~~  159 (170)
                      +++.|..|+..+|++|+|+|.+++..+++....+..++..-.....|++++.||.|++++.+.+++...+....+ ....
T Consensus        73 lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~  152 (185)
T KOG0073|consen   73 LRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHH  152 (185)
T ss_pred             hHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccC
Confidence            999999999999999999999999999888888888776444456899999999999999999999988885555 7788


Q ss_pred             eEEEeeeccCC
Q 030848          160 CMFEAVSGYDG  170 (170)
Q Consensus       160 ~~~~~~Sa~~g  170 (170)
                      ++++.|||.+|
T Consensus       153 ~~l~~cs~~tg  163 (185)
T KOG0073|consen  153 WRLVKCSAVTG  163 (185)
T ss_pred             ceEEEEecccc
Confidence            99999999887

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=1e-27  Score=171.84  Aligned_cols=142  Identities=18%  Similarity=0.402  Sum_probs=114.6

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe----cCeEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ...+||+++|.+|+|||||++++..      +.....+.+|++.......+    ....+.+|||+|++.+...+..+++
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~------~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   84 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLT------GEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI   84 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhh------CCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcc
Confidence            5779999999999999999999876      44555666777766554332    3468999999999999999999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC-CHHHHHhHhCccccccceeEEEeeeccC
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV-SADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      .++++|+|||++++.+++.+..|+..+....  ++.|+++|+||+|+.+.. ..+++ +..+     ...++|++|||++
T Consensus        85 ~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~~~~-----~~~~~~~e~SAk~  156 (219)
T PLN03071         85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-TFHR-----KKNLQYYEISAKS  156 (219)
T ss_pred             cccEEEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH-HHHH-----hcCCEEEEcCCCC
Confidence            9999999999999999999999998887653  579999999999996533 33333 3333     3457899999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       157 ~  157 (219)
T PLN03071        157 N  157 (219)
T ss_pred             C
Confidence            7

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.96  E-value=4.6e-29  Score=167.72  Aligned_cols=151  Identities=23%  Similarity=0.315  Sum_probs=121.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE----EEecCeEEEEEEcCCCCcchhhHHHHh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYY   89 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~   89 (170)
                      .+..+||.+.|++|+|||||+|++..      ..+.+.+..|++..+..    ++..-.-++||||+|++++.++.-.++
T Consensus         6 K~~lLKViiLGDsGVGKtSLmn~yv~------~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFY   79 (210)
T KOG0394|consen    6 KRTLLKVIILGDSGVGKTSLMNQYVN------KKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFY   79 (210)
T ss_pred             cccceEEEEeCCCCccHHHHHHHHHH------HHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhccccee
Confidence            45679999999999999999999976      55666677777766542    333345699999999999999999999


Q ss_pred             hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCC---CCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeee
Q 030848           90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL---QGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVS  166 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  166 (170)
                      +.+|.+++|||++++.+|+.+..|..+++.+...   ...|+|+++||+|+.+..++..-.+.++.-+....++||+|+|
T Consensus        80 RgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtS  159 (210)
T KOG0394|consen   80 RGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETS  159 (210)
T ss_pred             cCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEec
Confidence            9999999999999999999999999999887653   3479999999999977443333333333333355689999999


Q ss_pred             ccCC
Q 030848          167 GYDG  170 (170)
Q Consensus       167 a~~g  170 (170)
                      ||.+
T Consensus       160 AK~~  163 (210)
T KOG0394|consen  160 AKEA  163 (210)
T ss_pred             cccc
Confidence            9964

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.96  E-value=1.8e-27  Score=163.20  Aligned_cols=142  Identities=24%  Similarity=0.366  Sum_probs=108.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE-EE--EEecCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GR--IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   94 (170)
                      +||+++|++|+|||||++++.+      +.....+.++..... ..  ++.....+.+|||||++++...+..+++.+|+
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~   74 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQ------GHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEG   74 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh------CcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCE
Confidence            4899999999999999999976      222223333333221 12  22334678999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +++|+|++++.+++....|+..+.......+.|+++++||+|+.+  ....++..+..+     ...++++++||++|
T Consensus        75 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  147 (164)
T smart00173       75 FLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELAR-----QWGCPFLETSAKER  147 (164)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHH-----HcCCEEEEeecCCC
Confidence            999999999999999999988887665556789999999999975  234445555554     33468999999986

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04176 Rap2 Rap2 subgroup

Probab=99.96  E-value=1.6e-27  Score=163.35  Aligned_cols=143  Identities=26%  Similarity=0.378  Sum_probs=109.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee-EEEEE--ecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      ++||+++|.+|+|||||++++..      +...+.+.++.... ...+.  .....+.+|||||++.+...+..+++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad   74 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVS------GTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQ   74 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCC
Confidence            47999999999999999999976      34434444444321 12233  33456889999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++++|+|++++.++++...|+..+.......+.|+++++||+|+.+  .....+......     ...++++++||++|
T Consensus        75 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  148 (163)
T cd04176          75 GFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAE-----EWGCPFMETSAKSK  148 (163)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHH-----HhCCEEEEecCCCC
Confidence            9999999999999999999988887765456899999999999865  223333333332     23468999999986

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.96  E-value=2e-27  Score=163.66  Aligned_cols=143  Identities=25%  Similarity=0.412  Sum_probs=113.3

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEec--CeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      ..+||+++|++|+|||||++++.+      +.....+.++.+....  .+...  ...+.+||+||++.+...+..+++.
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~   75 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSE------DSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRG   75 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhh------CcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCC
Confidence            358999999999999999999986      4444455566655432  23333  3578999999999998888899999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +|++++|+|++++.+++.+..|+..+.... ..+.|+++++||+|+.+  ....++..+.+.     ...++++++||++
T Consensus        76 ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~  149 (167)
T cd01867          76 AMGIILVYDITDEKSFENIRNWMRNIEEHA-SEDVERMLVGNKCDMEEKRVVSKEEGEALAD-----EYGIKFLETSAKA  149 (167)
T ss_pred             CCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCC
Confidence            999999999999999999999888886643 36789999999999975  345555555555     3456899999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       150 ~  150 (167)
T cd01867         150 N  150 (167)
T ss_pred             C
Confidence            6

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04117 Rab15 Rab15 subfamily

Probab=99.96  E-value=2.7e-27  Score=162.12  Aligned_cols=141  Identities=23%  Similarity=0.387  Sum_probs=112.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEec--CeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      ++|+++|++|+|||||++++..      +...+.+.++.+....  .+...  ...+.+||++|++.+...+..+++.+|
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~   74 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTD------NEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQ   74 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCc
Confidence            4899999999999999999976      4445555667665443  33433  367899999999999888889999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++++|||++++++++.+..|+..+.... ..+.|+++++||.|+..  ....++.....+     ...++|++|||++|
T Consensus        75 ~~i~v~d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~  147 (161)
T cd04117          75 GIFLVYDISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLAK-----EYGMDFFETSACTN  147 (161)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCC
Confidence            9999999999999999999988886543 35789999999999965  344556666555     34468999999986

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01865 Rab3 Rab3 subfamily

Probab=99.96  E-value=2.5e-27  Score=162.84  Aligned_cols=141  Identities=25%  Similarity=0.383  Sum_probs=110.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEE--ecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      +||+++|++|+|||||++++.+      +.....+.++.+..+.  .+.  .....+.+||+||++.+...+..+++.+|
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~   75 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYAD------DSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAM   75 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCc
Confidence            6999999999999999999986      4444455566654432  222  23467999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++++|+|++++++++.+..|+..+.... ....|+++++||+|+.+.  ...++..+..+     ...++++++||++|
T Consensus        76 ~~l~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  148 (165)
T cd01865          76 GFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLAD-----QLGFEFFEASAKEN  148 (165)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHHH-----HcCCEEEEEECCCC
Confidence            9999999999999999999988875433 357899999999999753  34455554444     33457999999986

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.95  E-value=2e-27  Score=164.19  Aligned_cols=141  Identities=24%  Similarity=0.417  Sum_probs=110.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE--EE--ecCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   94 (170)
                      ||+++|++|+|||||++++..      +.+...+.+|++.....  +.  .....+.+|||||++.+...+..+++.+|+
T Consensus         2 ki~ivG~~~vGKTsli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~   75 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCK------DVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQA   75 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCE
Confidence            799999999999999999987      55556667777665532  22  234679999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC----HHHHHhHhCccccccceeEEEeeeccCC
Q 030848           95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS----ADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +++|+|++++++++....|+..+.......+.|+++|+||+|+.+...    .++..+..+     ....+++++||++|
T Consensus        76 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~g  150 (170)
T cd04108          76 IIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAA-----EMQAEYWSVSALSG  150 (170)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHH-----HcCCeEEEEECCCC
Confidence            999999999999999999998887654445678999999999865322    222333333     23457999999986

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.95  E-value=4.8e-27  Score=161.46  Aligned_cols=142  Identities=29%  Similarity=0.470  Sum_probs=111.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEec--CeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      .+||+++|++|+|||||++++..      +.....+.++.+....  .+...  ...+.+||+||++.+...+..+++.+
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   75 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFAD------DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA   75 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcC
Confidence            47999999999999999999976      3333344455554332  33333  45789999999999998899999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      |++|+|+|+++++++..+..|+..+.... .++.|+++++||+|+.+.  ...++..+..+     ...++++++||++|
T Consensus        76 ~~ii~v~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  149 (166)
T cd01869          76 HGIIIVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFAD-----ELGIPFLETSAKNA  149 (166)
T ss_pred             CEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHH-----HcCCeEEEEECCCC
Confidence            99999999999999999999988886543 357899999999998653  44455555555     34568999999986

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.95  E-value=1.8e-28  Score=159.45  Aligned_cols=140  Identities=26%  Similarity=0.454  Sum_probs=122.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE----EEEecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      ++++++|++|+|||+|+.++..      +++..++..|++..+.    .+++..+++.|||++|+|.++.+.+.|++..|
T Consensus         9 fkllIigDsgVGKssLl~rF~d------dtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgth   82 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFAD------DTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTH   82 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhh------cccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCc
Confidence            5679999999999999999987      6777788788887765    24456688999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++++|||+++.++|.+...|++++.+.+  +..|-++|+||.|.++  ....++++..+.     .+++.++|+|||.+
T Consensus        83 gv~vVYDVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~-----~mgie~FETSaKe~  154 (198)
T KOG0079|consen   83 GVIVVYDVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTEDARAFAL-----QMGIELFETSAKEN  154 (198)
T ss_pred             eEEEEEECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceeeehHHHHHHHH-----hcCchheehhhhhc
Confidence            9999999999999999999999998876  4888999999999987  456677777777     78889999999853

>cd04140 ARHI_like ARHI subfamily

Probab=99.95  E-value=2.9e-27  Score=162.52  Aligned_cols=142  Identities=20%  Similarity=0.319  Sum_probs=108.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   94 (170)
                      +||+++|++|+|||||++++.+      +.....+.++.+....   ..+.....+.+|||||++++...+..+++.+++
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   75 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVK------GTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHA   75 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh------CCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCE
Confidence            7899999999999999999986      3333444455443332   223345679999999999999888888999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           95 VVFVIDAACPSRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +++|||++++.+++.+..|+..+.....  .++.|+++|+||+|+.+  ....++......     ...+++++|||++|
T Consensus        76 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~SA~~g  150 (165)
T cd04140          76 FILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACAT-----EWNCAFMETSAKTN  150 (165)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHH-----HhCCcEEEeecCCC
Confidence            9999999999999999888877654322  25789999999999975  333444444443     34568999999987

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.95  E-value=2.7e-27  Score=163.47  Aligned_cols=142  Identities=29%  Similarity=0.480  Sum_probs=110.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEE--ecCeEEEEEEcCCCCcch-hhHHHHhhc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIE--VSNSKLVFWDLGGQPGLR-SIWEKYYEE   91 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~i~D~~G~~~~~-~~~~~~~~~   91 (170)
                      .+||+++|++|+|||||++++..      +.......++.+....  .+.  .....+.+||+||++.+. ..+..++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   75 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCA------GRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRN   75 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh------CCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcC
Confidence            47999999999999999999976      3444445555554432  233  334789999999998886 467888899


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +|++++|||++++.+++.+..|...+.......+.|+++++||+|+.+.  ...++..+..+     ...++|++|||++
T Consensus        76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~  150 (170)
T cd04115          76 VHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFAD-----AHSMPLFETSAKD  150 (170)
T ss_pred             CCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHH-----HcCCcEEEEeccC
Confidence            9999999999999999999999888876655567999999999999753  34445555554     3457899999997

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.95  E-value=8.1e-27  Score=162.94  Aligned_cols=147  Identities=40%  Similarity=0.688  Sum_probs=113.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe-----cCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-----SNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      .+||+++|.+|||||||++++..      +..... .+|.+........     .+..+.+|||||++.+...+..+++.
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~------~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~   75 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKF------NEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRC   75 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc------CCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhcc
Confidence            58999999999999999999975      222222 3555444433332     45789999999999999999999999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccc-ccceeEEEeeeccCC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL-DERVCMFEAVSGYDG  170 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~g  170 (170)
                      +|++++|+|++++.+++....++..+.......+.|+++++||+|+.+....++..+.+..... ....++++++||++|
T Consensus        76 ~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~  155 (183)
T cd04152          76 TDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIG  155 (183)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccC
Confidence            9999999999999888888888887776554467899999999999876666666665542222 223467999999986

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04109 Rab28 Rab28 subfamily

Probab=99.95  E-value=4.5e-27  Score=168.14  Aligned_cols=142  Identities=28%  Similarity=0.382  Sum_probs=113.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe---cCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV---SNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      +||+++|++|+|||||++++..      +.....+.+|++....  .+..   ....+.+|||||++.+...+..+++.+
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~------~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~a   74 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAK------EGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGA   74 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcC
Confidence            5899999999999999999976      4445566677775543  2333   246799999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      |++|+|||++++.+++.+..|...+.....  ..+.|+++|+||+|+.+  ....++..+..+     ...++++++||+
T Consensus        75 d~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~-----~~~~~~~~iSAk  149 (215)
T cd04109          75 HAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQ-----ANGMESCLVSAK  149 (215)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEECC
Confidence            999999999999999999998888876543  24578999999999964  445555555555     334679999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       150 tg  151 (215)
T cd04109         150 TG  151 (215)
T ss_pred             CC
Confidence            87

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.95  E-value=2.5e-27  Score=164.28  Aligned_cols=142  Identities=19%  Similarity=0.318  Sum_probs=105.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      .+||+++|++|+|||||+.++..      +.+...+.++......   .++.....+.+|||+|++.+...+..+++.+|
T Consensus         1 ~~ki~iiG~~~vGKSsli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   74 (174)
T cd01871           1 AIKCVVVGDGAVGKTCLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTD   74 (174)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhc------CCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCC
Confidence            37999999999999999999976      4444555555543322   23334467899999999999998999999999


Q ss_pred             EEEEEEeCCCcccHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCcccc--------------CCHHHHHhHhCccccccc
Q 030848           94 AVVFVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLDER  158 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~ii~v~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~  158 (170)
                      ++|+|||++++++++.+.. |+..+....  ++.|+++|+||+|+.+.              .+.++..+..+    +..
T Consensus        75 ~~ilv~d~~~~~sf~~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~  148 (174)
T cd01871          75 VFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK----EIG  148 (174)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHH----HcC
Confidence            9999999999999999864 655554432  57999999999999642              22333333333    112


Q ss_pred             eeEEEeeeccCC
Q 030848          159 VCMFEAVSGYDG  170 (170)
Q Consensus       159 ~~~~~~~Sa~~g  170 (170)
                      .++|++|||++|
T Consensus       149 ~~~~~e~Sa~~~  160 (174)
T cd01871         149 AVKYLECSALTQ  160 (174)
T ss_pred             CcEEEEeccccc
Confidence            358999999987

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=9.1e-27  Score=159.03  Aligned_cols=145  Identities=40%  Similarity=0.761  Sum_probs=113.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe-cCeEEEEEEcCCCCcchhhHHHHhhccCEEEE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF   97 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   97 (170)
                      +|+++|++|+|||||++++..      +... ...+|.+.....+.. ....+.+||+||++.+...+..+++.+|++++
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~------~~~~-~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~   73 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKH------AELV-TTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVY   73 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhc------CCcc-cccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            589999999999999999976      2222 223555555444443 34689999999999998889999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccc-cccceeEEEeeeccCC
Q 030848           98 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKK-LDERVCMFEAVSGYDG  170 (170)
Q Consensus        98 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~g  170 (170)
                      |+|++++.++.....++..++......+.|+++++||+|++.....+++...+.... .....+++++|||++|
T Consensus        74 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~  147 (160)
T cd04156          74 VVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTG  147 (160)
T ss_pred             EEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccC
Confidence            999999988888888888887654446799999999999987666777766654222 2235678999999986

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04111 Rab39 Rab39 subfamily

Probab=99.95  E-value=4.8e-27  Score=167.47  Aligned_cols=143  Identities=27%  Similarity=0.450  Sum_probs=113.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe---cCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV---SNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      ++||+++|++|+|||||++++..      +.......++++....  .+..   ....+.+|||||++.+...+..+++.
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~------~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   75 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTE------GRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRN   75 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcC
Confidence            58999999999999999999986      3333344456655433  2322   24679999999999999888999999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +|++++|||++++.+++++..|+..+.........|+++++||+|+.+  ....++..+..+     ...++++++||++
T Consensus        76 ~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sak~  150 (211)
T cd04111          76 SVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAK-----DLGMKYIETSART  150 (211)
T ss_pred             CcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHH-----HhCCEEEEEeCCC
Confidence            999999999999999999999999887665445678999999999976  344555555554     3447899999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       151 g  151 (211)
T cd04111         151 G  151 (211)
T ss_pred             C
Confidence            6

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.95  E-value=6.2e-27  Score=160.09  Aligned_cols=140  Identities=23%  Similarity=0.399  Sum_probs=110.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE--EEe----cCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV----SNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      +||+++|++|+|||||++++..      +.....+.++++..+..  +..    ....+.+|||||++.+...+..+++.
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   74 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVK------GIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRG   74 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcC
Confidence            5899999999999999999976      33344455666555422  222    34679999999999999999999999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +|++++|+|++++++++.+..|...+....  .+.|+++++||+|+..  ....++..+..+     ...++++++||++
T Consensus        75 ~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~  147 (162)
T cd04106          75 AQACILVFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALAK-----RLQLPLFRTSVKD  147 (162)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHHH-----HcCCeEEEEECCC
Confidence            999999999999999999988888775433  5789999999999965  344556655555     3446899999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       148 ~  148 (162)
T cd04106         148 D  148 (162)
T ss_pred             C
Confidence            6

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.95  E-value=9.1e-27  Score=159.33  Aligned_cols=140  Identities=28%  Similarity=0.551  Sum_probs=117.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE--EEe--cCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   94 (170)
                      ||+++|++|+|||||++++.+      +...+.+.++.+.....  +..  ....+.+||++|++.+......+++.+|+
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~   74 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLIN------GEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDA   74 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH------SSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESE
T ss_pred             CEEEECCCCCCHHHHHHHHHh------hcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            799999999999999999987      45556677777555443  333  45679999999999999988899999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +|+|||++++.+++.+..|+..+..... ...|+++++||.|+.+  +.+.++..+.++     ....+|+++||++|
T Consensus        75 ~ii~fd~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~  146 (162)
T PF00071_consen   75 IIIVFDVTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAK-----ELGVPYFEVSAKNG  146 (162)
T ss_dssp             EEEEEETTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHH-----HTTSEEEEEBTTTT
T ss_pred             cccccccccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHH-----HhCCEEEEEECCCC
Confidence            9999999999999999999998876654 5689999999999986  667777777777     44589999999976

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.95  E-value=2e-26  Score=156.38  Aligned_cols=145  Identities=39%  Similarity=0.722  Sum_probs=118.5

Q ss_pred             EEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEE
Q 030848           20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI   99 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   99 (170)
                      |+++|++|+|||||++++.+      ........++.+.....+...+..+.+||+||++.+...+..+++.+|++++|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~   75 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAG------GQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVV   75 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHcc------CCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEE
Confidence            78999999999999999977      334445567777776667777788999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848          100 DAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       100 d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      |++++.++.....++..+.......+.|+++++||+|+.+.....+..+.+.........++++++||++|
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  146 (159)
T cd04159          76 DAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEK  146 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccC
Confidence            99998888888888888776544467899999999999877666666666553333445678999999986

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04144 Ras2 Ras2 subfamily

Probab=99.95  E-value=4.3e-27  Score=165.26  Aligned_cols=141  Identities=24%  Similarity=0.304  Sum_probs=107.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEe--cCeEEEEEEcCCCCcchhhHHHHhhccCEE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   95 (170)
                      ||+++|.+|+|||||++++..      +.....+.++++.... .+..  ....+.+|||||++++...+..+++.+|++
T Consensus         1 ki~ivG~~~vGKTsli~~l~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~   74 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCL------NHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGF   74 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHh------CCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEE
Confidence            589999999999999999976      3333344455543322 2233  335689999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           96 VFVIDAACPSRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        96 i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      |+|||++++.+++.+..|+..+.....  ..+.|+++++||+|+.+  .....+..+..+     ...++++++||++|
T Consensus        75 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~SAk~~  148 (190)
T cd04144          75 ILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALAR-----RLGCEFIEASAKTN  148 (190)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHH-----HhCCEEEEecCCCC
Confidence            999999999999999999888765432  25789999999999964  334444444443     34468999999986

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04128 Spg1 Spg1p

Probab=99.95  E-value=8e-27  Score=162.79  Aligned_cols=140  Identities=21%  Similarity=0.338  Sum_probs=108.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEec--CeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      +||+++|+.|+|||||++++..      +.+.+.+.+|++..+.  .+...  ...+.+||++|++.+...+..+++++|
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~------~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~   74 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVE------GEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAV   74 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCC
Confidence            5899999999999999999987      4555567788876653  34443  467999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC-------HHHHHhHhCccccccceeEEEeee
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS-------ADELARYLDLKKLDERVCMFEAVS  166 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~S  166 (170)
                      ++++|||++++.+++++..|+..+..... ...| ++|+||+|+.+...       .++..+..+     ..++++++||
T Consensus        75 ~iilv~D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~-----~~~~~~~e~S  147 (182)
T cd04128          75 AILFMFDLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAK-----AMKAPLIFCS  147 (182)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhhhHHHHHHHHH-----HcCCEEEEEe
Confidence            99999999999999999999988866432 4566 67899999964211       122223332     3347899999


Q ss_pred             ccCC
Q 030848          167 GYDG  170 (170)
Q Consensus       167 a~~g  170 (170)
                      |++|
T Consensus       148 Ak~g  151 (182)
T cd04128         148 TSHS  151 (182)
T ss_pred             CCCC
Confidence            9987

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04110 Rab35 Rab35 subfamily

Probab=99.95  E-value=1.1e-26  Score=164.29  Aligned_cols=142  Identities=25%  Similarity=0.437  Sum_probs=112.5

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe--cCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      ..+||+++|++|+|||||++++..      ......+.+|.+....  .+..  ....+.+||+||++.+...+..+++.
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~   78 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFAD------NTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRG   78 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhc------CCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCC
Confidence            468999999999999999999976      3344455566665433  3333  33578999999999999999999999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      ++++++|+|++++.+++.+..|+..+....  +..|+++++||+|+.+.  ...++..+..+     ...++++++||++
T Consensus        79 a~~iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~  151 (199)
T cd04110          79 THGVIVVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFAG-----QMGISLFETSAKE  151 (199)
T ss_pred             CcEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEECCC
Confidence            999999999999999999999998876543  57899999999999763  34455555554     3346899999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       152 ~  152 (199)
T cd04110         152 N  152 (199)
T ss_pred             C
Confidence            6

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04116 Rab9 Rab9 subfamily

Probab=99.95  E-value=9.8e-27  Score=160.48  Aligned_cols=146  Identities=20%  Similarity=0.376  Sum_probs=113.5

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--E--EEecCeEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--R--IEVSNSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ...+||+++|++|+|||||++++..      +...+...++.+....  .  ++.....+.+||+||++.+...+..+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~   76 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVT------NKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYR   76 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHc------CCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhc
Confidence            3568999999999999999999976      3434444455554432  2  3334567899999999999999999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC---CCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEeee
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNED---LQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVS  166 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~S  166 (170)
                      .+|++++|||++++.+++.+..|...+.....   ..+.|+++++||+|+.. ....++..+.++..    ...+++++|
T Consensus        77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~e~S  152 (170)
T cd04116          77 GSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCREN----GDYPYFETS  152 (170)
T ss_pred             CCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHC----CCCeEEEEE
Confidence            99999999999999999999988888765432   24689999999999965 45666676666521    234799999


Q ss_pred             ccCC
Q 030848          167 GYDG  170 (170)
Q Consensus       167 a~~g  170 (170)
                      |++|
T Consensus       153 a~~~  156 (170)
T cd04116         153 AKDA  156 (170)
T ss_pred             CCCC
Confidence            9986

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04155 Arl3 Arl3 subfamily

Probab=99.95  E-value=4e-26  Score=157.77  Aligned_cols=152  Identities=40%  Similarity=0.685  Sum_probs=123.4

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        12 ~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      ....+.++|+++|++|+|||||++++.+.      . .....++.+.+...+...+..+.+||+||+..+...+..+++.
T Consensus         9 ~~~~~~~~v~i~G~~g~GKStLl~~l~~~------~-~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~   81 (173)
T cd04155           9 RKSSEEPRILILGLDNAGKTTILKQLASE------D-ISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFEN   81 (173)
T ss_pred             hccCCccEEEEEccCCCCHHHHHHHHhcC------C-CcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcC
Confidence            34456899999999999999999999762      1 1234456666666677778899999999999888888888999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +|++++|+|+++..++.....++..+.......+.|+++++||+|+.+....+++.+.+.........++++++||++|
T Consensus        82 ~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~  160 (173)
T cd04155          82 TDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTG  160 (173)
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCC
Confidence            9999999999998888888888877766544457999999999999887777778777775555556678899999987

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01864 Rab19 Rab19 subfamily

Probab=99.95  E-value=2.1e-26  Score=158.15  Aligned_cols=144  Identities=26%  Similarity=0.443  Sum_probs=109.9

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee--EEEEEecC--eEEEEEEcCCCCcchhhHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      ..+||+++|++|+|||||++++..      +.......++.+..  ...+...+  ..+.+||+||++.+...+..+++.
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~   75 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKS------GTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRS   75 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhh------CCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhcc
Confidence            458999999999999999999976      33334444444433  23344444  578999999999998888999999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ....+..+..+.    ....+++++||++
T Consensus        76 ~d~~llv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~  150 (165)
T cd01864          76 ANGAIIAYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAEK----NGMLAVLETSAKE  150 (165)
T ss_pred             CCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHH----cCCcEEEEEECCC
Confidence            999999999999999999999988886542 367899999999999753  344445554441    1224689999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       151 ~  151 (165)
T cd01864         151 S  151 (165)
T ss_pred             C
Confidence            7

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04124 RabL2 RabL2 subfamily

Probab=99.95  E-value=8.3e-27  Score=159.71  Aligned_cols=139  Identities=24%  Similarity=0.398  Sum_probs=105.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE----EEEecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      +||+++|++|+|||||++++..      +...+...++.+....    .++.....+.+|||||++.+...+..+++.+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   74 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLM------DGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAH   74 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh------CCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCC
Confidence            5899999999999999999976      3333333344443322    22334567899999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++|+|+|++++.+++....|+..+....  ++.|+++++||+|+.+.. ..+..+..+     ...++++++||++|
T Consensus        75 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~p~ivv~nK~Dl~~~~-~~~~~~~~~-----~~~~~~~~~Sa~~~  143 (161)
T cd04124          75 ACILVFDVTRKITYKNLSKWYEELREYR--PEIPCIVVANKIDLDPSV-TQKKFNFAE-----KHNLPLYYVSAADG  143 (161)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEECccCchhH-HHHHHHHHH-----HcCCeEEEEeCCCC
Confidence            9999999999999999888888886542  478999999999985432 222222222     23468999999986

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04113 Rab4 Rab4 subfamily

Probab=99.95  E-value=1.2e-26  Score=158.64  Aligned_cols=141  Identities=28%  Similarity=0.437  Sum_probs=110.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEE--ecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      +||+++|++|+|||||++++.+      +.......++.+....  .+.  .....+.+||+||++.+...+..+++.+|
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~   74 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVE------NKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAA   74 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCC
Confidence            5899999999999999999986      3333444444443332  222  33467899999999999888899999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++++|+|++++++++.+..|+..+.... .++.|+++++||+|+.+  ....++.....+     ...++++++||++|
T Consensus        75 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  147 (161)
T cd04113          75 GALLVYDITNRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLADQREVTFLEASRFAQ-----ENGLLFLETSALTG  147 (161)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcchhccCCHHHHHHHHH-----HcCCEEEEEECCCC
Confidence            9999999999999999999888775443 36789999999999975  345556666665     33478999999986

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.95  E-value=3.8e-27  Score=153.05  Aligned_cols=160  Identities=35%  Similarity=0.648  Sum_probs=144.7

Q ss_pred             hhHHHHhhhcc---CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848            4 LFYGLWKYIFT---KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (170)
Q Consensus         4 ~~~~~~~~~~~---~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   80 (170)
                      ++.+.+.++.+   +.++.+.++|-.+||||||+|.+..      +.+.+...||.+.+.+.++-.+..+.+||.||++.
T Consensus         4 ~~~k~L~wi~~~f~k~emel~lvGLq~sGKtt~Vn~ia~------g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~r   77 (186)
T KOG0075|consen    4 KLRKKLVWICNSFWKEEMELSLVGLQNSGKTTLVNVIAR------GQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR   77 (186)
T ss_pred             HHHHHHHHHHHHHHHheeeEEEEeeccCCcceEEEEEee------ccchhhhcccccceeEEeccCceEEEEEecCCCcc
Confidence            44444444443   5889999999999999999999976      66777788999999999999999999999999999


Q ss_pred             chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccccccee
Q 030848           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC  160 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  160 (170)
                      ++.+|+.|.+.+++++||+|+.+++.++..+.-++.++......+.|+++++||.|++++.+..++.+++...-+..+.+
T Consensus        78 frsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREv  157 (186)
T KOG0075|consen   78 FRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREV  157 (186)
T ss_pred             HHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceE
Confidence            99999999999999999999999999999999999999888888999999999999999999999999999888888999


Q ss_pred             EEEeeeccC
Q 030848          161 MFEAVSGYD  169 (170)
Q Consensus       161 ~~~~~Sa~~  169 (170)
                      -++.+|++.
T Consensus       158 cC~siScke  166 (186)
T KOG0075|consen  158 CCFSISCKE  166 (186)
T ss_pred             EEEEEEEcC
Confidence            999999985

>cd01868 Rab11_like Rab11-like

Probab=99.95  E-value=1.5e-26  Score=158.75  Aligned_cols=142  Identities=25%  Similarity=0.436  Sum_probs=110.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEecC--eEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      .+||+++|++|+|||||++++.+      +.......++.+....  .+...+  ..+.+||+||++.+...+..+++.+
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   76 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTR------NEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGA   76 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCC
Confidence            47999999999999999999976      2333333455554332  333333  5789999999999988889999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +++|+|+|++++.+++.+..|+..+..... .+.|+++++||+|+..  ....++......     ...++++++||++|
T Consensus        77 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  150 (165)
T cd01868          77 VGALLVYDITKKQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLRHLRAVPTEEAKAFAE-----KNGLSFIETSALDG  150 (165)
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccccCCHHHHHHHHH-----HcCCEEEEEECCCC
Confidence            999999999999999999999888866542 4689999999999975  334555555554     34578999999986

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01866 Rab2 Rab2 subfamily

Probab=99.95  E-value=2.1e-26  Score=158.65  Aligned_cols=142  Identities=26%  Similarity=0.377  Sum_probs=110.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEE--EecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRI--EVSNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      .+||+++|.+|+|||||++++..      +.......++.+...  ..+  ......+.+||+||++++......+++.+
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   77 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTD------KRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGA   77 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccC
Confidence            48999999999999999999976      333333334444332  222  33346799999999999988888899999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      |++++|+|++++.+++.+..|+..+..... ++.|+++++||.|+.+  ....++....++     ...++++++||++|
T Consensus        78 d~il~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~  151 (168)
T cd01866          78 AGALLVYDITRRETFNHLTSWLEDARQHSN-SNMTIMLIGNKCDLESRREVSYEEGEAFAK-----EHGLIFMETSAKTA  151 (168)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCC
Confidence            999999999999999999999988866532 6799999999999974  345556666555     44568999999876

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.95  E-value=2.2e-26  Score=157.55  Aligned_cols=142  Identities=27%  Similarity=0.458  Sum_probs=110.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--E--EEEecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--G--RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      ++||+++|++|+|||||++++.+      +.......++.+...  .  .++.....+.+||+||++++...+..+++.+
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   74 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVK------NEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGA   74 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccC
Confidence            47999999999999999999987      333333344444322  1  2333456799999999999988888899999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      |++++|+|++++++++....|+..+..... ++.|+++++||+|+.+  ....++..+...     ...++++++||++|
T Consensus        75 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  148 (163)
T cd01860          75 AAAIVVYDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYAD-----ENGLLFFETSAKTG  148 (163)
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHH-----HcCCEEEEEECCCC
Confidence            999999999999999999999888876543 6789999999999874  345555555555     33468999999986

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.95  E-value=2.3e-26  Score=157.12  Aligned_cols=138  Identities=17%  Similarity=0.319  Sum_probs=101.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC--eEEEEEEcCCCCcchhhHHHHhhccCEE
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~   95 (170)
                      +||+++|+.|+|||||+.++..      +.+.+...++.+.....+...+  ..+.+||++|++.     ..+++.+|++
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~------~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~   69 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLT------GSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAV   69 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHh------CCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEE
Confidence            4899999999999999999875      2222223333332223344444  6699999999975     2456889999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc----cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD----AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        96 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++|||++++.+|+.+..|+..+......++.|+++++||.|+..    ..+.++..+..+    ....++|++|||++|
T Consensus        70 ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~e~SAk~~  144 (158)
T cd04103          70 IFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCA----DMKRCSYYETCATYG  144 (158)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHH----HhCCCcEEEEecCCC
Confidence            99999999999999999999887765556789999999999852    344444444443    123478999999986

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04177 RSR1 RSR1 subgroup

Probab=99.95  E-value=2e-26  Score=158.81  Aligned_cols=144  Identities=20%  Similarity=0.319  Sum_probs=110.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEE--ecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      ++||+++|.+|+|||||++++.+      +.....+.++...... .+.  .....+.+|||||++.+..++..+++.++
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   74 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQ------NVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQ   74 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHh------CCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCC
Confidence            47899999999999999999976      3333444455543322 223  33467899999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++++|+|++++.+++....|...+.......+.|+++++||.|+.+.  ...++..+..+.    ...++++++||++|
T Consensus        75 ~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~SA~~~  149 (168)
T cd04177          75 GFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQ----WGNVPFYETSARKR  149 (168)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHH----cCCceEEEeeCCCC
Confidence            99999999999999999988888876544467999999999999753  334444443331    12368999999986

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01863 Rab18 Rab18 subfamily

Probab=99.95  E-value=3.1e-26  Score=156.52  Aligned_cols=142  Identities=23%  Similarity=0.406  Sum_probs=111.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe--cCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      +||+++|++|+|||||++++.+      ........++.+....  .+..  ....+.+||+||++.+...+..+++.+|
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   74 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTD------DTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQ   74 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHc------CCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCC
Confidence            5899999999999999999976      2222223344444322  2222  3467999999999999888888999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++++|+|++++.+++....|+..+.......+.|+++++||+|+.. ....++..+..+     ...++++++||++|
T Consensus        75 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  147 (161)
T cd01863          75 GVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR-----KHNMLFIETSAKTR  147 (161)
T ss_pred             EEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH-----HcCCEEEEEecCCC
Confidence            9999999999999999988888887766667899999999999974 445556555555     34678999999986

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04125 RabA_like RabA-like subfamily

Probab=99.95  E-value=2.8e-26  Score=160.81  Aligned_cols=141  Identities=27%  Similarity=0.406  Sum_probs=109.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEE--ecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      +||+++|++|+|||||++++..      +.....+.++.+....  .+.  .....+.+||+||++.+...+..+++.+|
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d   74 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTE------DEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAH   74 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCC
Confidence            5899999999999999999976      3444445566654432  222  23467899999999999989999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++|+|||+++++++..+..|+..+..... ...|+++++||+|+.+  ....++..+..+     ...++++++||++|
T Consensus        75 ~iilv~d~~~~~s~~~i~~~~~~i~~~~~-~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~evSa~~~  147 (188)
T cd04125          75 GYLLVYDVTDQESFENLKFWINEINRYAR-ENVIKVIVANKSDLVNNKVVDSNIAKSFCD-----SLNIPFFETSAKQS  147 (188)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCCCcccccCCHHHHHHHHH-----HcCCeEEEEeCCCC
Confidence            99999999999999999998888865432 4589999999999975  234444444444     33458999999986

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.95  E-value=3.3e-26  Score=160.22  Aligned_cols=140  Identities=21%  Similarity=0.315  Sum_probs=105.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEE---ecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIE---VSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      +||+++|++|+|||||++++..      +.....+.++....+. .+.   .....+.+|||||++++...+..+++.+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~------~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad   74 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQ------GKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVD   74 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHh------CcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCC
Confidence            5899999999999999999986      3344445555544432 222   23457999999999999998988999999


Q ss_pred             EEEEEEeCCCcccHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCcccc------CCHHHHHhHhCcccccccee-EEEee
Q 030848           94 AVVFVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPDA------VSADELARYLDLKKLDERVC-MFEAV  165 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~ii~v~nK~D~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~  165 (170)
                      ++|+|+|++++.+++.+.. |+..+...  .++.|+++++||+|+...      ...++..+...     ...+ +++++
T Consensus        75 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~e~  147 (187)
T cd04132          75 VLLICYAVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAK-----KQGAFAYLEC  147 (187)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHH-----HcCCcEEEEc
Confidence            9999999999999998865 55555433  257899999999999653      24555555554     2333 79999


Q ss_pred             eccCC
Q 030848          166 SGYDG  170 (170)
Q Consensus       166 Sa~~g  170 (170)
                      ||++|
T Consensus       148 Sa~~~  152 (187)
T cd04132         148 SAKTM  152 (187)
T ss_pred             cCCCC
Confidence            99986

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.95  E-value=4.9e-26  Score=156.00  Aligned_cols=142  Identities=20%  Similarity=0.337  Sum_probs=107.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE--EE---ecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE---VSNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      +||+++|++|||||||++++...    .......+.++++.....  +.   .....+.+|||||++.+..++..+++++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~----~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   76 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSN----GAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESP   76 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC----CCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCC
Confidence            58999999999999999999751    113344555666555432  21   2447899999999998888889999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC--CHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV--SADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      |++++|+|++++.+++.+..|+..+....  .+.|+++++||+|+.+..  ...+......     ...++++++||++|
T Consensus        77 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  149 (164)
T cd04101          77 SVFILVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFAQ-----ANQLKFFKTSALRG  149 (164)
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHHH-----HcCCeEEEEeCCCC
Confidence            99999999999999998888888876543  568999999999996532  3333333332     33467999999986

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01861 Rab6 Rab6 subfamily

Probab=99.94  E-value=5.6e-26  Score=155.23  Aligned_cols=141  Identities=23%  Similarity=0.424  Sum_probs=109.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEecC--eEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      .||+++|++|||||||++++.+      ........++.+....  .+...+  ..+.+||+||++.+...+..+++.+|
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~   74 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMY------DTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSS   74 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHc------CCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCC
Confidence            4899999999999999999976      3333344444444332  333333  56999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++++|+|++++++++....|+..+..... .+.|+++++||+|+.+  ....++......     ...++++++||++|
T Consensus        75 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  147 (161)
T cd01861          75 VAVVVYDITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKAK-----ELNAMFIETSAKAG  147 (161)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHHH-----HhCCEEEEEeCCCC
Confidence            99999999999999999999888866533 3689999999999954  234555555554     34478999999986

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.94  E-value=4.2e-26  Score=165.84  Aligned_cols=143  Identities=20%  Similarity=0.300  Sum_probs=111.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee-EEEEEe--cCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   94 (170)
                      +||+++|++|+|||||++++..      +.+...+.+|++.. ...+..  +...+.||||+|++.+..++..++..+|+
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~------~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~   74 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLG------GRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDV   74 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCE
Confidence            4899999999999999999976      33344455555422 223333  34678999999999988888888899999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHcCC--------CCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEe
Q 030848           95 VVFVIDAACPSRFEDSKTALEKVLRNE--------DLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEA  164 (170)
Q Consensus        95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  164 (170)
                      +|+|||++++.+|+++..|+..+....        ...+.|+++++||+|+..  +...+++.+.+..    ...+++++
T Consensus        75 iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~----~~~~~~~e  150 (247)
T cd04143          75 FILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG----DENCAYFE  150 (247)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh----cCCCEEEE
Confidence            999999999999999999988886532        225789999999999974  5566777766651    23568999


Q ss_pred             eeccCC
Q 030848          165 VSGYDG  170 (170)
Q Consensus       165 ~Sa~~g  170 (170)
                      +||++|
T Consensus       151 vSAktg  156 (247)
T cd04143         151 VSAKKN  156 (247)
T ss_pred             EeCCCC
Confidence            999986

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04134 Rho3 Rho3 subfamily

Probab=99.94  E-value=1.7e-26  Score=162.15  Aligned_cols=141  Identities=23%  Similarity=0.319  Sum_probs=105.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-E--EEecCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-R--IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   94 (170)
                      .||+++|++|+|||||++++..      +.....+.+|....+. .  .+.....+.+|||+|++.+...+..+++.+|+
T Consensus         1 ~kivivG~~~vGKTsli~~~~~------~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~   74 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTR------GYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDV   74 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc------CCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCE
Confidence            3799999999999999999976      4444455566554433 2  23344679999999999998888888999999


Q ss_pred             EEEEEeCCCcccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCccccCCH--------------HHHHhHhCccccccce
Q 030848           95 VVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDAVSA--------------DELARYLDLKKLDERV  159 (170)
Q Consensus        95 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~--------------~~~~~~~~~~~~~~~~  159 (170)
                      +++|||++++.+++.+. .|+..+....  ++.|+++|+||+|+.+....              ++..+.+.    ....
T Consensus        75 ~ilv~dv~~~~sf~~~~~~~~~~i~~~~--~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~  148 (189)
T cd04134          75 IMLCFSVDSPDSLENVESKWLGEIREHC--PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAK----RINA  148 (189)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHH----HcCC
Confidence            99999999999998886 4666665432  57899999999999764322              22222222    1233


Q ss_pred             eEEEeeeccCC
Q 030848          160 CMFEAVSGYDG  170 (170)
Q Consensus       160 ~~~~~~Sa~~g  170 (170)
                      ++|++|||++|
T Consensus       149 ~~~~e~SAk~~  159 (189)
T cd04134         149 LRYLECSAKLN  159 (189)
T ss_pred             CEEEEccCCcC
Confidence            68999999986

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=8.7e-27  Score=160.05  Aligned_cols=143  Identities=23%  Similarity=0.405  Sum_probs=123.7

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE----EEecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      ..+||+++|++|+|||-|+.|+..      +.+.....+|+++.+..    ++.+..+.+||||+||++++...+.|++.
T Consensus        13 ylFKiVliGDS~VGKsnLlsRftr------nEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrg   86 (222)
T KOG0087|consen   13 YLFKIVLIGDSAVGKSNLLSRFTR------NEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRG   86 (222)
T ss_pred             eEEEEEEeCCCccchhHHHHHhcc------cccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcc
Confidence            457899999999999999999976      55555666788887664    45566889999999999999999999999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +.++++|||++...+|+.+..|+.++..... +++++++|+||+||..  ..+-++......     .+..+|+++||..
T Consensus        87 AvGAllVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~lraV~te~~k~~Ae-----~~~l~f~EtSAl~  160 (222)
T KOG0087|consen   87 AVGALLVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHLRAVPTEDGKAFAE-----KEGLFFLETSALD  160 (222)
T ss_pred             cceeEEEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhccccchhhhHhHHH-----hcCceEEEecccc
Confidence            9999999999999999999999999988765 7899999999999986  667777777777     6777899999975


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      +
T Consensus       161 ~  161 (222)
T KOG0087|consen  161 A  161 (222)
T ss_pred             c
Confidence            3

>cd04112 Rab26 Rab26 subfamily

Probab=99.94  E-value=4e-26  Score=160.44  Aligned_cols=141  Identities=28%  Similarity=0.486  Sum_probs=107.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCC-CcccCCcceeEE--EEE--ecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP-DRIVPTVGLNIG--RIE--VSNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~--~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      +||+++|++|+|||||++++..      +... ..+.++++....  .+.  .....+.+|||||++.+...+..+++.+
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a   74 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKD------GAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDA   74 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc------CCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCC
Confidence            5899999999999999999976      2221 233445444332  233  3346799999999999988888899999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      |++|+|+|++++++++++..|+..+.... ..+.|+++++||+|+..  ....++..+...     ...++|+++||++|
T Consensus        75 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~-----~~~~~~~e~Sa~~~  148 (191)
T cd04112          75 HALLLLYDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGERLAK-----EYGVPFMETSAKTG  148 (191)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHHHHH-----HcCCeEEEEeCCCC
Confidence            99999999999999999999888876643 35789999999999964  344455555544     33468999999986

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03110 Rab GTPase; Provisional

Probab=99.94  E-value=4.9e-26  Score=162.87  Aligned_cols=143  Identities=20%  Similarity=0.341  Sum_probs=112.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe--cCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      ..+||+++|++|+|||||++++.+      +.....+.++++....  .+..  ....+.+||++|++++...+..+++.
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~------~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~   84 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTR------NEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG   84 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCC
Confidence            458999999999999999999976      3333445566665543  2333  34689999999999999999999999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      ++++|+|||++++.+++.+..|+..+.... ..+.|+++++||+|+.+.  ...++......     ...++++++||++
T Consensus        85 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~-----~~~~~~~e~SA~~  158 (216)
T PLN03110         85 AVGALLVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALAE-----KEGLSFLETSALE  158 (216)
T ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHHH-----HcCCEEEEEeCCC
Confidence            999999999999999999999988876543 257899999999998652  33444444443     3467899999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       159 g  159 (216)
T PLN03110        159 A  159 (216)
T ss_pred             C
Confidence            6

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.94  E-value=3.4e-26  Score=161.52  Aligned_cols=135  Identities=17%  Similarity=0.350  Sum_probs=107.1

Q ss_pred             EcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE----ecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEE
Q 030848           23 LGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE----VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV   98 (170)
Q Consensus        23 vG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   98 (170)
                      +|..|+|||||++++..      +.....+.+|++.......    .....+.+|||+|++.+..++..+++.+|++|+|
T Consensus         1 vG~~~vGKTsLi~r~~~------~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV   74 (200)
T smart00176        1 VGDGGTGKTTFVKRHLT------GEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   74 (200)
T ss_pred             CCCCCCCHHHHHHHHhc------CCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEE
Confidence            69999999999999975      4444556677776654332    2457899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           99 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        99 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ||+++..+++.+..|+..+....  ++.|+++|+||+|+.......+..+..+     ...++|++|||++|
T Consensus        75 ~D~t~~~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~~~~~-----~~~~~~~e~SAk~~  139 (200)
T smart00176       75 FDVTARVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSITFHR-----KKNLQYYDISAKSN  139 (200)
T ss_pred             EECCChHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHHHHHH-----HcCCEEEEEeCCCC
Confidence            99999999999999988887653  5799999999999865322222223333     45678999999986

Ran is involved in the active transport of proteins through nuclear pores.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.94  E-value=3.5e-26  Score=161.05  Aligned_cols=144  Identities=17%  Similarity=0.173  Sum_probs=104.4

Q ss_pred             eeEEEEEcCCCCChHHHHH-HHHhhcccCCCCCCCcccCCcce-e-EE-----------EEEecCeEEEEEEcCCCCcch
Q 030848           17 EFHVLILGIDKAGKTTLLE-KLKSVYSNVEGLPPDRIVPTVGL-N-IG-----------RIEVSNSKLVFWDLGGQPGLR   82 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~-~l~~~~~~~~~~~~~~~~~~~~~-~-~~-----------~~~~~~~~~~i~D~~G~~~~~   82 (170)
                      .+||+++|+.|+|||||+. ++.+.. -........+.||++. . +.           .++.....+.+|||+|++.. 
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~-~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKT-LTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCC-cccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh-
Confidence            4799999999999999996 553310 0112234455666642 1 11           23445678999999998752 


Q ss_pred             hhHHHHhhccCEEEEEEeCCCcccHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCccc---------------------c
Q 030848           83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPD---------------------A  140 (170)
Q Consensus        83 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~ii~v~nK~D~~~---------------------~  140 (170)
                       ....+++.+|++|+|||++++.+++.+.. |...+....  ++.|+++|+||+|+.+                     .
T Consensus        80 -~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~  156 (195)
T cd01873          80 -DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADI  156 (195)
T ss_pred             -hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCc
Confidence             34557899999999999999999999874 666664432  5789999999999863                     3


Q ss_pred             CCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848          141 VSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      .+.++..+.++     ..+++|+||||++|
T Consensus       157 V~~~e~~~~a~-----~~~~~~~E~SAkt~  181 (195)
T cd01873         157 LPPETGRAVAK-----ELGIPYYETSVVTQ  181 (195)
T ss_pred             cCHHHHHHHHH-----HhCCEEEEcCCCCC
Confidence            45666666665     55678999999987

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.4e-26  Score=150.48  Aligned_cols=142  Identities=24%  Similarity=0.368  Sum_probs=121.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe----cCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      ..|++++|...+|||||+-++.+      +.....+..|+++.++.-++    +..++++|||+|+|.++...-.+++.+
T Consensus        21 mfKlliiGnssvGKTSfl~ry~d------dSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRga   94 (193)
T KOG0093|consen   21 MFKLLIIGNSSVGKTSFLFRYAD------DSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGA   94 (193)
T ss_pred             eeeEEEEccCCccchhhhHHhhc------cccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhcc
Confidence            35999999999999999999987      56666777888887665433    457899999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +++|++||++|.++|..+..|.-.+..+.+ .+.|+|+++||||+.+  -.+.+..+..++     ..+..|+|+|||.|
T Consensus        95 mgfiLmyDitNeeSf~svqdw~tqIktysw-~naqvilvgnKCDmd~eRvis~e~g~~l~~-----~LGfefFEtSaK~N  168 (193)
T KOG0093|consen   95 MGFILMYDITNEESFNSVQDWITQIKTYSW-DNAQVILVGNKCDMDSERVISHERGRQLAD-----QLGFEFFETSAKEN  168 (193)
T ss_pred             ceEEEEEecCCHHHHHHHHHHHHHheeeec-cCceEEEEecccCCccceeeeHHHHHHHHH-----HhChHHhhhccccc
Confidence            999999999999999999999999977755 7899999999999986  467777778777     44447999999865

>cd01862 Rab7 Rab7 subfamily

Probab=99.94  E-value=1.3e-25  Score=154.81  Aligned_cols=143  Identities=24%  Similarity=0.395  Sum_probs=107.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEec--CeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      +||+++|++|+|||||++++.+      ........++.+....  .+...  ...+.+||+||++.+...+..+++.+|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d   74 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVN------KKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGAD   74 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc------CCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCC
Confidence            5899999999999999999976      2233333344443322  23333  356789999999999888999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCC---CCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNED---LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      ++|+|+|++++.+++....|...+.....   ..+.|+++++||+|+.+  ....++..+.+..    ....+++++||+
T Consensus        75 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~  150 (172)
T cd01862          75 CCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQS----NGNIPYFETSAK  150 (172)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHH----cCCceEEEEECC
Confidence            99999999999999888888777655433   24789999999999973  4455565555541    113689999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       151 ~~  152 (172)
T cd01862         151 EA  152 (172)
T ss_pred             CC
Confidence            86

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.94  E-value=1.4e-25  Score=153.52  Aligned_cols=142  Identities=23%  Similarity=0.315  Sum_probs=110.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   94 (170)
                      +||+++|++|+|||||++++..      ......+.+++.....   ..+.....+.+||+||++.+...+..+++.+++
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   74 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMY------DEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEG   74 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh------CCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCE
Confidence            4899999999999999999976      2222233333332222   233345679999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +++|+|++++.++.....|+..+.......+.|+++++||+|+.+  .....+..+..+     ....+++++||++|
T Consensus        75 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  147 (164)
T cd04139          75 FLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLAR-----QWGVPYVETSAKTR  147 (164)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHH-----HhCCeEEEeeCCCC
Confidence            999999999999999999999888765556899999999999976  344455455444     33468999999986

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.94  E-value=1.3e-25  Score=153.68  Aligned_cols=141  Identities=30%  Similarity=0.500  Sum_probs=108.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEec--CeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      +||+++|++|+|||||++++.+      ........++.+....  .+...  ...+.+||+||++.+...+..+++.+|
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d   74 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTD------GKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAV   74 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCC
Confidence            5899999999999999999986      2223334344444322  33333  367899999999998888899999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++++|+|++++.+++.+..|+..+..... ++.|+++++||+|+.+  ....+...+...     ...++++++||++|
T Consensus        75 ~~ilv~d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~  147 (164)
T smart00175       75 GALLVYDITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAFAE-----EHGLPFFETSAKTN  147 (164)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHHHH-----HcCCeEEEEeCCCC
Confidence            99999999999999998888887765543 5899999999999876  234455555544     34467999999986

Rab GTPases are implicated in vesicle trafficking.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.94  E-value=6.8e-26  Score=156.76  Aligned_cols=138  Identities=21%  Similarity=0.331  Sum_probs=101.3

Q ss_pred             EEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EE--EecCeEEEEEEcCCCCcchhhHHHHhhccCEEE
Q 030848           20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RI--EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVV   96 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   96 (170)
                      |+++|++|+|||||++++..      +.....+.++...... .+  +.....+.+|||||++++...+..+++.+|++|
T Consensus         1 i~i~G~~~vGKTsli~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   74 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTT------NAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFL   74 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHh------CCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEE
Confidence            58999999999999999976      3333334444433322 22  233456999999999999888888999999999


Q ss_pred             EEEeCCCcccHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCcccc--------------CCHHHHHhHhCccccccce-e
Q 030848           97 FVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLDERV-C  160 (170)
Q Consensus        97 ~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~ii~v~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~-~  160 (170)
                      +|||++++.+++.+.. |+..+....  ++.|+++++||+|+.+.              ...++..+..+     ... .
T Consensus        75 lv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~  147 (174)
T smart00174       75 ICFSVDSPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAK-----RIGAV  147 (174)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHH-----HcCCc
Confidence            9999999999998864 666665432  58999999999999752              22333333333     222 3


Q ss_pred             EEEeeeccCC
Q 030848          161 MFEAVSGYDG  170 (170)
Q Consensus       161 ~~~~~Sa~~g  170 (170)
                      ++++|||++|
T Consensus       148 ~~~e~Sa~~~  157 (174)
T smart00174      148 KYLECSALTQ  157 (174)
T ss_pred             EEEEecCCCC
Confidence            7999999986

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.94  E-value=7e-26  Score=155.54  Aligned_cols=141  Identities=21%  Similarity=0.261  Sum_probs=102.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee-EE--EEEecCeEEEEEEcCCCCc-chhhHHHHhhccCE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IG--RIEVSNSKLVFWDLGGQPG-LRSIWEKYYEEAHA   94 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~~~   94 (170)
                      ||+++|++|+|||||++++..      +.....+.++.... ..  .++.....+.+||+||++. .......+++.+|+
T Consensus         1 ki~vvG~~~~GKtsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~   74 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLT------KRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADG   74 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHh------CccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCE
Confidence            589999999999999999975      22223333333221 11  2333445789999999885 34456678899999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           95 VVFVIDAACPSRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +|+|+|++++.+++.+..|+..+..... ..+.|+++++||+|+.+  ..+.++..+..+     ...++|+++||++|
T Consensus        75 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~  148 (165)
T cd04146          75 FVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLAS-----ELGCLFFEVSAAED  148 (165)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHH-----HcCCEEEEeCCCCC
Confidence            9999999999999999888877765432 35799999999999864  334555555554     23468999999975

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=6.8e-26  Score=148.35  Aligned_cols=142  Identities=27%  Similarity=0.409  Sum_probs=119.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE----EEEecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      -+|++++|+.|+|||.|+.++..      ....+....|+++.+.    .+..+..+++||||+||+.+++....|++.+
T Consensus         9 LfKfl~iG~aGtGKSCLLh~Fie------~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA   82 (214)
T KOG0086|consen    9 LFKFLVIGSAGTGKSCLLHQFIE------NKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA   82 (214)
T ss_pred             hheeEEeccCCCChhHHHHHHHH------hhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence            47899999999999999999976      3333444455555543    3445668899999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      .+.++|||+++.++|+.+..|+..+... ..+++-+++++||.|+.+  +.+..|..++++     ++.+.+.++||++|
T Consensus        83 AGAlLVYD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~~~R~VtflEAs~Faq-----Enel~flETSa~TG  156 (214)
T KOG0086|consen   83 AGALLVYDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLEASRFAQ-----ENELMFLETSALTG  156 (214)
T ss_pred             cceEEEEeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcChhhhhhHHHHHhhhc-----ccceeeeeeccccc
Confidence            9999999999999999999999888654 347888899999999986  678889999998     77778999999987

>cd04123 Rab21 Rab21 subfamily

Probab=99.94  E-value=2e-25  Score=152.32  Aligned_cols=141  Identities=23%  Similarity=0.361  Sum_probs=106.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEEE--ecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      +||+++|++|+|||||++++..      +.......+++....  ..+.  .....+.+||+||++.+...+..+++.+|
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~   74 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVE------NKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDAD   74 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh------CCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCC
Confidence            5899999999999999999986      222222223332222  1232  23457999999999999888898999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++++|+|++++++++....|+..+..... .+.|+++++||+|+.+.  ...++..+..+     ....+++++||++|
T Consensus        75 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~  147 (162)
T cd04123          75 GAILVYDITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAK-----SVGAKHFETSAKTG  147 (162)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCC
Confidence            99999999999999999888888866544 37899999999999753  34555555554     34567899999986

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>PLN03108 Rab family protein; Provisional

Probab=99.94  E-value=2.7e-25  Score=158.44  Aligned_cols=143  Identities=27%  Similarity=0.384  Sum_probs=111.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEE--ecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIE--VSNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      ..+||+++|++|+|||||++++..      ........++++....  .+.  .....+.+|||+|++.+...+..+++.
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~------~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~   78 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTD------KRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG   78 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcc
Confidence            468999999999999999999976      2223333445544432  233  334678999999999998888899999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +|++++|+|++++.+++.+..|+..+.... .++.|+++++||+|+.+  ..+.++..+.++     ...++++++||++
T Consensus        79 ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~  152 (210)
T PLN03108         79 AAGALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKT  152 (210)
T ss_pred             CCEEEEEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHHH-----HcCCEEEEEeCCC
Confidence            999999999999999999988888775543 25789999999999976  456666666665     3456899999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       153 ~  153 (210)
T PLN03108        153 A  153 (210)
T ss_pred             C
Confidence            6

>cd04142 RRP22 RRP22 subfamily

Probab=99.94  E-value=1.6e-25  Score=158.12  Aligned_cols=143  Identities=18%  Similarity=0.274  Sum_probs=102.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEecC--eEEEEEEcCCCCcch----h----hH
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLR----S----IW   85 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~i~D~~G~~~~~----~----~~   85 (170)
                      +||+++|.+|+|||||++++..      +.....+.|+++....  .+...+  ..+.+|||||.+.+.    .    ..
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~------~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~   74 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLA------QEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPR   74 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHc------CCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHH
Confidence            5899999999999999999976      3334445555543322  233333  678899999965431    1    12


Q ss_pred             HHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCC--CCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeE
Q 030848           86 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE--DLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCM  161 (170)
Q Consensus        86 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~  161 (170)
                      ...++.+|++|+|||++++.+++.+..|+..+....  ...+.|+++++||+|+.+.  ...++..+...    ....++
T Consensus        75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~----~~~~~~  150 (198)
T cd04142          75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR----KSWKCG  150 (198)
T ss_pred             HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH----HhcCCc
Confidence            345689999999999999999999999988887654  2467999999999999652  33333333322    124578


Q ss_pred             EEeeeccCC
Q 030848          162 FEAVSGYDG  170 (170)
Q Consensus       162 ~~~~Sa~~g  170 (170)
                      |++|||++|
T Consensus       151 ~~e~Sak~g  159 (198)
T cd04142         151 YLECSAKYN  159 (198)
T ss_pred             EEEecCCCC
Confidence            999999987

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>PLN03118 Rab family protein; Provisional

Probab=99.94  E-value=3.8e-25  Score=157.78  Aligned_cols=145  Identities=26%  Similarity=0.445  Sum_probs=108.4

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe--cCeEEEEEEcCCCCcchhhHHHHh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYY   89 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~   89 (170)
                      .+..+||+++|++|+|||||++++..      ... ..+.++.+....  .+..  ....+.+|||||++.+...+..++
T Consensus        11 ~~~~~kv~ivG~~~vGKTsli~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~   83 (211)
T PLN03118         11 YDLSFKILLIGDSGVGKSSLLVSFIS------SSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYY   83 (211)
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHh------CCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHH
Confidence            34678999999999999999999976      111 234455554432  2333  346789999999999999999999


Q ss_pred             hccCEEEEEEeCCCcccHHHHHHHHHHHHc-CCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeee
Q 030848           90 EEAHAVVFVIDAACPSRFEDSKTALEKVLR-NEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVS  166 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S  166 (170)
                      +.+|++|+|||++++.+++.+...|..... .....+.|+++|+||+|+...  ...++..+...     ...++|+++|
T Consensus        84 ~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~-----~~~~~~~e~S  158 (211)
T PLN03118         84 RNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAK-----EHGCLFLECS  158 (211)
T ss_pred             hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-----HcCCEEEEEe
Confidence            999999999999999999988775554443 222356799999999999753  33444444444     3456899999


Q ss_pred             ccCC
Q 030848          167 GYDG  170 (170)
Q Consensus       167 a~~g  170 (170)
                      |++|
T Consensus       159 Ak~~  162 (211)
T PLN03118        159 AKTR  162 (211)
T ss_pred             CCCC
Confidence            9986

>cd00154 Rab Rab family

Probab=99.94  E-value=5.2e-25  Score=149.33  Aligned_cols=141  Identities=29%  Similarity=0.505  Sum_probs=111.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEE--Ee--cCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI--EV--SNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      +||+++|++|+|||||++++.+      ........++.+......  ..  ....+.+||+||++.+...+..+++.+|
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   74 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVD------GKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAH   74 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHh------CcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCC
Confidence            5899999999999999999986      333344445555444432  22  3477999999999998888899999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc--ccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP--DAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++++|+|++++++++.+..|+..+..... ...|+++++||+|+.  .....++..+...     ....+++++||++|
T Consensus        75 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~  147 (159)
T cd00154          75 GAILVYDITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETSAKTG  147 (159)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCeEEEEecCCC
Confidence            99999999999999999988888766542 578999999999995  4556666666665     35678999999975

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.94  E-value=8.5e-26  Score=149.33  Aligned_cols=144  Identities=26%  Similarity=0.405  Sum_probs=123.9

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-----EEEecCeEEEEEEcCCCCcchhhHHHHhh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-----RIEVSNSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ..+|+.++|++-+|||||+..+..      +....-..||.++.+.     .-++...++++|||+|++.+++....|++
T Consensus         7 yqfrlivigdstvgkssll~~ft~------gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyr   80 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTE------GKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYR   80 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhc------CcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhh
Confidence            458999999999999999999976      6666667788887754     23345678999999999999999999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeec
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSG  167 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  167 (170)
                      ++-++++|||++|.++|+.+..|..+...... +.++-..+|++|+|+..  .+..+|.++..+     .....|+|+||
T Consensus        81 nsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa-----~hgM~FVETSa  155 (213)
T KOG0091|consen   81 NSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAA-----SHGMAFVETSA  155 (213)
T ss_pred             cccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHH-----hcCceEEEecc
Confidence            99999999999999999999999999877665 34455678899999975  788899999988     77788999999


Q ss_pred             cCC
Q 030848          168 YDG  170 (170)
Q Consensus       168 ~~g  170 (170)
                      ++|
T Consensus       156 k~g  158 (213)
T KOG0091|consen  156 KNG  158 (213)
T ss_pred             cCC
Confidence            987

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=5e-26  Score=148.43  Aligned_cols=143  Identities=26%  Similarity=0.461  Sum_probs=117.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE----EEEecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      --+||+++|..|+|||.|+.++..      +.+++....|+++.++    .++++..+++||||+|++++++..+.|++.
T Consensus         6 flfkivlvgnagvgktclvrrftq------glfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrs   79 (213)
T KOG0095|consen    6 FLFKIVLVGNAGVGKTCLVRRFTQ------GLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRS   79 (213)
T ss_pred             eeEEEEEEccCCcCcchhhhhhhc------cCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhh
Confidence            457999999999999999999977      7778888888888766    344566889999999999999999999999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc-CCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA-VSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +|++|+|||+++..+|+-+-+|+.++.++.. .++--|+|+||+|+.+. +-++.+-+.+.    +....-|.++||+.
T Consensus        80 ahalilvydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~drrevp~qigeefs----~~qdmyfletsake  153 (213)
T KOG0095|consen   80 AHALILVYDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADRREVPQQIGEEFS----EAQDMYFLETSAKE  153 (213)
T ss_pred             cceEEEEEecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhhhhhhHHHHHHHH----Hhhhhhhhhhcccc
Confidence            9999999999999999999999999987754 56777999999999763 44444444333    23455688888874

>cd04118 Rab24 Rab24 subfamily

Probab=99.93  E-value=5.3e-25  Score=154.86  Aligned_cols=140  Identities=24%  Similarity=0.320  Sum_probs=105.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCC-cccCCcceeEE--EEEec--CeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD-RIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      +||+++|++|+|||||++++..      +.+.. .+.+|++..+.  .+...  ...+.+||++|++++..++..+++.+
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~   74 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVH------HRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGA   74 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh------CCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCC
Confidence            5899999999999999999976      33322 34555554432  23333  35678999999999988888899999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC------CHHHHHhHhCccccccceeEEEeee
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV------SADELARYLDLKKLDERVCMFEAVS  166 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~S  166 (170)
                      |++++|||++++.+++....|+..+....  ++.|+++|+||+|+.+..      ...++.+...     ...++++++|
T Consensus        75 d~iilv~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~S  147 (193)
T cd04118          75 KAAIVCYDLTDSSSFERAKFWVKELQNLE--EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFAD-----EIKAQHFETS  147 (193)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccccccccccCccCHHHHHHHHH-----HcCCeEEEEe
Confidence            99999999999999999888888776532  478999999999986421      2233444333     3346799999


Q ss_pred             ccCC
Q 030848          167 GYDG  170 (170)
Q Consensus       167 a~~g  170 (170)
                      |++|
T Consensus       148 a~~~  151 (193)
T cd04118         148 SKTG  151 (193)
T ss_pred             CCCC
Confidence            9986

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.93  E-value=2.6e-25  Score=153.94  Aligned_cols=140  Identities=19%  Similarity=0.322  Sum_probs=102.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE-EEEEe--cCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   94 (170)
                      +|++++|++|+|||||++++..      +.+...+.+|..... ..+..  ....+.+||+||++.+...+..+++.+|+
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~   74 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTT------NGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDV   74 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcE
Confidence            5899999999999999999976      333444445442221 12223  34678999999999998888889999999


Q ss_pred             EEEEEeCCCcccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccc--------------CCHHHHHhHhCccccccce
Q 030848           95 VVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLDERV  159 (170)
Q Consensus        95 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~  159 (170)
                      +|+|||++++.+++... .|+..+...  .++.|+++++||+|+.+.              ...++..+..+     ...
T Consensus        75 ~i~v~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~-----~~~  147 (173)
T cd04130          75 FLLCFSVVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAE-----KIG  147 (173)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHH-----HhC
Confidence            99999999999998875 466555532  256899999999998642              22333333333     223


Q ss_pred             -eEEEeeeccCC
Q 030848          160 -CMFEAVSGYDG  170 (170)
Q Consensus       160 -~~~~~~Sa~~g  170 (170)
                       .+|++|||++|
T Consensus       148 ~~~~~e~Sa~~~  159 (173)
T cd04130         148 ACEYIECSALTQ  159 (173)
T ss_pred             CCeEEEEeCCCC
Confidence             38999999986

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04135 Tc10 TC10 subfamily

Probab=99.93  E-value=2.6e-25  Score=153.86  Aligned_cols=141  Identities=18%  Similarity=0.292  Sum_probs=100.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEe--cCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   94 (170)
                      +||+++|++|+|||||++++..      +.....+.++...... .+..  ....+.+|||||++.+...+..+++.+|+
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   74 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYAN------DAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   74 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCE
Confidence            5899999999999999999976      3333334444432221 2333  33558899999999998888888999999


Q ss_pred             EEEEEeCCCcccHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCccccC--------------CHHHHHhHhCccccccce
Q 030848           95 VVFVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPDAV--------------SADELARYLDLKKLDERV  159 (170)
Q Consensus        95 ~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~ii~v~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~  159 (170)
                      +++|+|++++.+++.... |...+...  .++.|+++++||+|+.+..              ..++..+..+    ....
T Consensus        75 ~ilv~~~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~  148 (174)
T cd04135          75 FLICFSVVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAK----EIGA  148 (174)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHH----HcCC
Confidence            999999999999988865 44444332  3689999999999986532              2223333332    1122


Q ss_pred             eEEEeeeccCC
Q 030848          160 CMFEAVSGYDG  170 (170)
Q Consensus       160 ~~~~~~Sa~~g  170 (170)
                      .+|++|||++|
T Consensus       149 ~~~~e~Sa~~~  159 (174)
T cd04135         149 HCYVECSALTQ  159 (174)
T ss_pred             CEEEEecCCcC
Confidence            47999999986

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd01893 Miro1 Miro1 subfamily

Probab=99.93  E-value=4.7e-25  Score=151.68  Aligned_cols=142  Identities=19%  Similarity=0.238  Sum_probs=97.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEecCeEEEEEEcCCCCcchhhHHHHhhccCEE
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   95 (170)
                      +||+++|++|+|||||++++..      +........+......  .+......+.+|||||++++...+..+++.+|++
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~   74 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVS------EEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVI   74 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh------CcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEE
Confidence            4899999999999999999976      2222222221111111  2334567899999999988877777778999999


Q ss_pred             EEEEeCCCcccHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCccccCCH----HHHHhHhCccccccceeEEEeeeccCC
Q 030848           96 VFVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPDAVSA----DELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        96 i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++|+|++++.+++.+.. |...+... . .+.|+++++||+|+.+....    ++........   ....++++|||++|
T Consensus        75 ilv~d~~~~~s~~~~~~~~~~~i~~~-~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~Sa~~~  149 (166)
T cd01893          75 CLVYSVDRPSTLERIRTKWLPLIRRL-G-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEF---REIETCVECSAKTL  149 (166)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHH---hcccEEEEeccccc
Confidence            99999999999998765 44444332 2 47899999999999774432    2222211111   11137999999986

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.93  E-value=8.6e-25  Score=154.42  Aligned_cols=116  Identities=21%  Similarity=0.335  Sum_probs=96.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe-------cCeEEEEEEcCCCCcchhhHHHH
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV-------SNSKLVFWDLGGQPGLRSIWEKY   88 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~i~D~~G~~~~~~~~~~~   88 (170)
                      +||+++|++|+|||||++++..      +.+...+.+|++....  .+.+       +...+.+|||+|++.+..++..+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~------~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~   74 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICK------NQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVF   74 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHc------CCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHH
Confidence            5899999999999999999987      4444556677765433  2332       34679999999999999999999


Q ss_pred             hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCC------------------CCCCCcEEEEeeCCCccc
Q 030848           89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE------------------DLQGAPLLILANKQDLPD  139 (170)
Q Consensus        89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~ii~v~nK~D~~~  139 (170)
                      ++.+|++|+|||++++.+++++..|+..+....                  ...+.|+++|+||.|+.+
T Consensus        75 yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~  143 (202)
T cd04102          75 YNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP  143 (202)
T ss_pred             hCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence            999999999999999999999999999986532                  224689999999999965

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd01892 Miro2 Miro2 subfamily

Probab=99.93  E-value=5.5e-25  Score=151.84  Aligned_cols=143  Identities=19%  Similarity=0.225  Sum_probs=104.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCC-CcccCCcceeEE--EEE--ecCeEEEEEEcCCCCcchhhHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP-DRIVPTVGLNIG--RIE--VSNSKLVFWDLGGQPGLRSIWEKYY   89 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~--~~~--~~~~~~~i~D~~G~~~~~~~~~~~~   89 (170)
                      ++.+|++++|.+|+|||||++++.+      +... ..+.+|++....  .+.  .....+.+||++|++.+...+..++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~------~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~   75 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLG------RSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAEL   75 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhC------CCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhh
Confidence            5779999999999999999999976      3333 455566654432  233  3346789999999999988888889


Q ss_pred             hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC--CHHHHHhHhCccccccceeEEEeeec
Q 030848           90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV--SADELARYLDLKKLDERVCMFEAVSG  167 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa  167 (170)
                      +++|++|+|+|++++.+++.+..|+..+..   ..+.|+++|+||+|+.+..  ...+..+..+..+.    .+++++||
T Consensus        76 ~~~d~~llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa  148 (169)
T cd01892          76 AACDVACLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGL----PPPLHFSS  148 (169)
T ss_pred             hcCCEEEEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCC----CCCEEEEe
Confidence            999999999999999999888777765532   2478999999999996432  12222222221111    13588999


Q ss_pred             cCC
Q 030848          168 YDG  170 (170)
Q Consensus       168 ~~g  170 (170)
                      ++|
T Consensus       149 ~~~  151 (169)
T cd01892         149 KLG  151 (169)
T ss_pred             ccC
Confidence            876

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04148 RGK RGK subfamily

Probab=99.93  E-value=1.2e-24  Score=156.08  Aligned_cols=140  Identities=24%  Similarity=0.247  Sum_probs=101.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCC-CcccCCcc--eeEE--EEEecCeEEEEEEcCCCCcchhhHHHHhh-c
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP-DRIVPTVG--LNIG--RIEVSNSKLVFWDLGGQPGLRSIWEKYYE-E   91 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~-~~~~~~~~--~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~   91 (170)
                      +||+++|++|+|||||++++..      +.+. ..+.++.+  ....  .++.....+.+||+||++  ......+++ .
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~------~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~   72 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTS------GEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQ   72 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhc------CCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcC
Confidence            4899999999999999999965      2222 23333332  2222  333456779999999998  223345566 8


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +|++++|||++++.+++....|+..+.......+.|+++|+||+|+.+.  ...++..+...     ...++++++||++
T Consensus        73 ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~-----~~~~~~~e~SA~~  147 (221)
T cd04148          73 GDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAV-----VFDCKFIETSAGL  147 (221)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHH-----HcCCeEEEecCCC
Confidence            9999999999999999999998888866544467999999999999653  34444444433     3346899999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       148 ~  148 (221)
T cd04148         148 Q  148 (221)
T ss_pred             C
Confidence            6

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.93  E-value=2.1e-24  Score=150.22  Aligned_cols=142  Identities=23%  Similarity=0.293  Sum_probs=108.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee-EEEEEec--CeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~   94 (170)
                      .||+++|++|+|||||++++..      ........+++... ...+...  ...+.+||+||++++...+..++..+++
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~   75 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVE------GHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHG   75 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh------CCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCE
Confidence            5899999999999999999986      22223333443322 2223333  3568999999999998888899999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +++|+|+++..+++.+..++..+.......+.|+++++||+|+..  ....++..+..+     ...++++++||++|
T Consensus        76 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  148 (180)
T cd04137          76 YILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAE-----SWGAAFLESSAREN  148 (180)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHH-----HcCCeEEEEeCCCC
Confidence            999999999999999999999988876556789999999999974  233334443333     23368999999986

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd00876 Ras Ras family

Probab=99.93  E-value=1.8e-24  Score=147.23  Aligned_cols=141  Identities=26%  Similarity=0.370  Sum_probs=108.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE-EEEEec--CeEEEEEEcCCCCcchhhHHHHhhccCEE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   95 (170)
                      ||+++|++|+|||||++++.+      ........++..... ..+...  ...+.+||+||++.+...+..+++.+|++
T Consensus         1 ki~i~G~~~~GKTsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~   74 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVK------GTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGF   74 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHh------CCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEE
Confidence            689999999999999999976      222233333333221 123333  46799999999999988888999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        96 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++|+|+++++++.....++..+.........|+++++||+|+..  ....+++.+...     ....+++++||++|
T Consensus        75 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~  146 (160)
T cd00876          75 ILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-----EWGCPFIETSAKDN  146 (160)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-----HcCCcEEEeccCCC
Confidence            99999999999999999999888765546899999999999976  334455555555     33368999999986

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04114 Rab30 Rab30 subfamily

Probab=99.93  E-value=6e-24  Score=146.28  Aligned_cols=145  Identities=25%  Similarity=0.438  Sum_probs=105.8

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      +..++|+++|++|+|||||++++..      +...+...++++...  ..+...+  ..+.+||+||++.+...+..+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~   78 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQ------GLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYR   78 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhc
Confidence            4568999999999999999999975      233333344444322  2233433  56899999999999888889999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC-HHHHHhHhCccccccceeEEEeeeccC
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS-ADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      .+|++++|+|++++.+++....|+..+.... ..+.|+++++||+|+.+... ..+..+.+.    .....+++++||++
T Consensus        79 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~  153 (169)
T cd04114          79 SANALILTYDITCEESFRCLPEWLREIEQYA-NNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYYLETSAKE  153 (169)
T ss_pred             CCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEeeCCC
Confidence            9999999999999999988888877665432 24689999999999975322 222222222    12336899999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       154 ~  154 (169)
T cd04114         154 S  154 (169)
T ss_pred             C
Confidence            6

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.93  E-value=1.9e-24  Score=152.70  Aligned_cols=142  Identities=20%  Similarity=0.306  Sum_probs=106.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcc-eeEEEEEecC--eEEEEEEcCCCCcchhhHHHHhhccCEE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG-LNIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~   95 (170)
                      ||+++|++|+|||||++++..      +.....+.++.. .....+.+.+  ..+.+||+||+..+...+..+++.+|++
T Consensus         1 kv~vvG~~~vGKTsll~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v   74 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLY------DTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAF   74 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHh------CCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEE
Confidence            689999999999999999976      233333333432 2222344444  6799999999999988888899999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc---CCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA---VSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        96 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      |+|+|++++.+++....|+..+.......+.|+++++||+|+.+.   ...++..+...    .....+++++||++|
T Consensus        75 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~g  148 (198)
T cd04147          75 ALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE----LDWNCGFVETSAKDN  148 (198)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH----hhcCCcEEEecCCCC
Confidence            999999999999999999888887665567999999999999652   22223332222    122457999999986

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.93  E-value=1.2e-24  Score=150.57  Aligned_cols=141  Identities=23%  Similarity=0.323  Sum_probs=101.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEe--cCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   94 (170)
                      .||+++|++|+|||||++++..      +.+...+.++...... .+..  ....+.+|||||++.+...+..+++++|+
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   75 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSK------DQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV   75 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCE
Confidence            5899999999999999999987      3333444455544322 2333  44578999999999888877778899999


Q ss_pred             EEEEEeCCCcccHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCccccCCH--------------HHHHhHhCccccccce
Q 030848           95 VVFVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPDAVSA--------------DELARYLDLKKLDERV  159 (170)
Q Consensus        95 ~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~--------------~~~~~~~~~~~~~~~~  159 (170)
                      +++|+|++++++++.... |...+...  ..+.|+++++||+|+.+....              .+..+..+    ....
T Consensus        76 ~i~v~~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~----~~~~  149 (175)
T cd01870          76 ILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN----KIGA  149 (175)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHH----HcCC
Confidence            999999999999988865 55555432  257899999999998653221              11222221    1123


Q ss_pred             eEEEeeeccCC
Q 030848          160 CMFEAVSGYDG  170 (170)
Q Consensus       160 ~~~~~~Sa~~g  170 (170)
                      .++++|||++|
T Consensus       150 ~~~~~~Sa~~~  160 (175)
T cd01870         150 FGYMECSAKTK  160 (175)
T ss_pred             cEEEEeccccC
Confidence            48999999986

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd00157 Rho Rho (Ras homology) family

Probab=99.93  E-value=1.6e-24  Score=149.34  Aligned_cols=142  Identities=23%  Similarity=0.350  Sum_probs=100.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE---EEEEecCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI---GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   94 (170)
                      +||+++|++|+|||||++++.+      +.......++.....   .........+.+||+||++++......+++.+|+
T Consensus         1 iki~i~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~   74 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTT------GKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDV   74 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCE
Confidence            5899999999999999999987      222222223332221   1233445679999999999887777788899999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC-------------HHHHHhHhCccccccceeE
Q 030848           95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS-------------ADELARYLDLKKLDERVCM  161 (170)
Q Consensus        95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~-------------~~~~~~~~~~~~~~~~~~~  161 (170)
                      +++|+|++++.++......+........ .+.|+++++||+|+.+...             .++..+...    .....+
T Consensus        75 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~  149 (171)
T cd00157          75 FLICFSVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAK----EIGAIG  149 (171)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHH----HhCCeE
Confidence            9999999999888776554443333222 4799999999999986543             233333333    122238


Q ss_pred             EEeeeccCC
Q 030848          162 FEAVSGYDG  170 (170)
Q Consensus       162 ~~~~Sa~~g  170 (170)
                      ++++||++|
T Consensus       150 ~~~~Sa~~~  158 (171)
T cd00157         150 YMECSALTQ  158 (171)
T ss_pred             EEEeecCCC
Confidence            999999986

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.92  E-value=1.3e-24  Score=152.59  Aligned_cols=144  Identities=24%  Similarity=0.350  Sum_probs=125.2

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      ..+|++++|.+|+|||+|+.++..      +.+...+.||++..+.   .++.+...+.|+||+|++++..+...+++..
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~------~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~   75 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLT------GRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNG   75 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecc------cccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccC
Confidence            468999999999999999999987      6777778888875433   3444557799999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      |+.++||++++..||+.+..++..+....+....|+++|+||+|+..  .++.++.....+     ...++|+|+||+.+
T Consensus        76 ~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~-----~~~~~f~E~Sak~~  150 (196)
T KOG0395|consen   76 DGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALAR-----SWGCAFIETSAKLN  150 (196)
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHH-----hcCCcEEEeeccCC
Confidence            99999999999999999999999997766667789999999999986  788888888866     78889999999864

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2.9e-26  Score=150.93  Aligned_cols=142  Identities=24%  Similarity=0.405  Sum_probs=118.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE--EEe-----------cCeEEEEEEcCCCCcchhh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV-----------SNSKLVFWDLGGQPGLRSI   84 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----------~~~~~~i~D~~G~~~~~~~   84 (170)
                      ++.+..|++|+|||||+.+...      +.+.+.+-.|+++.+..  +.+           +...+++|||+|+|++++.
T Consensus        10 ikfLaLGDSGVGKTs~Ly~YTD------~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL   83 (219)
T KOG0081|consen   10 IKFLALGDSGVGKTSFLYQYTD------GKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL   83 (219)
T ss_pred             HHHHhhccCCCCceEEEEEecC------CcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence            5778899999999999988865      56666666777776542  111           2357999999999999999


Q ss_pred             HHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEE
Q 030848           85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMF  162 (170)
Q Consensus        85 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~  162 (170)
                      .-.+++++.+.|++||+++..+|-+++.|+.++.....-.++-|++++||+|+++  .++.+++.+.+.     ...+||
T Consensus        84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~-----kyglPY  158 (219)
T KOG0081|consen   84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALAD-----KYGLPY  158 (219)
T ss_pred             HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHH-----HhCCCe
Confidence            9999999999999999999999999999999997665556788999999999987  566677777776     677899


Q ss_pred             EeeeccCC
Q 030848          163 EAVSGYDG  170 (170)
Q Consensus       163 ~~~Sa~~g  170 (170)
                      +|+||-+|
T Consensus       159 fETSA~tg  166 (219)
T KOG0081|consen  159 FETSACTG  166 (219)
T ss_pred             eeeccccC
Confidence            99999876

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.92  E-value=8.4e-24  Score=151.24  Aligned_cols=145  Identities=17%  Similarity=0.375  Sum_probs=113.0

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe----cCeEEEEEEcCCCCcchhhHHHH
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVFWDLGGQPGLRSIWEKY   88 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~   88 (170)
                      .....+|++++|++|+|||||++++..      +.....+.+|.+........    ....+.+||++|++.+...+..+
T Consensus         5 ~~~~~~kv~liG~~g~GKTtLi~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~   78 (215)
T PTZ00132          5 DEVPEFKLILVGDGGVGKTTFVKRHLT------GEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGY   78 (215)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHh------CCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHH
Confidence            345679999999999999999988765      44445566777766554332    45789999999999998888889


Q ss_pred             hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      ++.++++++|+|+++..++..+..|+..+....  .+.|+++++||+|+.+.....+..+..+     ...+.++++||+
T Consensus        79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~e~Sa~  151 (215)
T PTZ00132         79 YIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITFHR-----KKNLQYYDISAK  151 (215)
T ss_pred             hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHHHH-----HcCCEEEEEeCC
Confidence            999999999999999999999998888886543  5789999999999865433333333333     345689999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       152 ~~  153 (215)
T PTZ00132        152 SN  153 (215)
T ss_pred             CC
Confidence            76

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.92  E-value=1.2e-23  Score=136.02  Aligned_cols=153  Identities=39%  Similarity=0.672  Sum_probs=137.9

Q ss_pred             hhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC-eEEEEEEcCCCCcchhhHHHHh
Q 030848           11 YIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRSIWEKYY   89 (170)
Q Consensus        11 ~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~   89 (170)
                      .+.+..++||++.|-.++|||||++.+..       ..+....||.+++...+...+ ..+.+||.+|+..++..|..|+
T Consensus        11 ks~t~rEirilllGldnAGKTT~LKqL~s-------ED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYy   83 (185)
T KOG0074|consen   11 KSRTRREIRILLLGLDNAGKTTFLKQLKS-------EDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYY   83 (185)
T ss_pred             cCCCcceEEEEEEecCCCcchhHHHHHcc-------CChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhh
Confidence            34467899999999999999999999964       444566788899988888877 8999999999999999999999


Q ss_pred             hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      .+.|++|||+|.++...|+++.+.+.+++........|+.+..||.|+..+...+++...+....++.+.+++.+|||.+
T Consensus        84 envd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals  163 (185)
T KOG0074|consen   84 ENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALS  163 (185)
T ss_pred             hccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCcccc
Confidence            99999999999999999999988888888877777899999999999999999999999999999999999999999986


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      +
T Consensus       164 ~  164 (185)
T KOG0074|consen  164 L  164 (185)
T ss_pred             c
Confidence            4

>cd04129 Rho2 Rho2 subfamily

Probab=99.91  E-value=2e-23  Score=146.28  Aligned_cols=142  Identities=25%  Similarity=0.365  Sum_probs=99.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EE--EecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RI--EVSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      +.||+++|++|+|||||++++..      +...+.+.++....+. .+  +.....+.+||++|++.+......+++.+|
T Consensus         1 ~~Ki~ivG~~g~GKStLl~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~   74 (187)
T cd04129           1 RRKLVIVGDGACGKTSLLSVFTL------GEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAH   74 (187)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHh------CCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCC
Confidence            36899999999999999999975      2233333344333222 22  233456899999999888776666789999


Q ss_pred             EEEEEEeCCCcccHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCcccc------------CCHHHHHhHhCcccccccee
Q 030848           94 AVVFVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPDA------------VSADELARYLDLKKLDERVC  160 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~ii~v~nK~D~~~~------------~~~~~~~~~~~~~~~~~~~~  160 (170)
                      ++++|+|+++.++++.+.. |...+....  ++.|+++++||+|+.+.            ...++..+..+    .....
T Consensus        75 ~~llv~~i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  148 (187)
T cd04129          75 VILIGFAVDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAK----EIGAK  148 (187)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHH----HhCCc
Confidence            9999999999999998875 555554432  56999999999998542            12233333333    11234


Q ss_pred             EEEeeeccCC
Q 030848          161 MFEAVSGYDG  170 (170)
Q Consensus       161 ~~~~~Sa~~g  170 (170)
                      +|++|||++|
T Consensus       149 ~~~e~Sa~~~  158 (187)
T cd04129         149 KYMECSALTG  158 (187)
T ss_pred             EEEEccCCCC
Confidence            7999999987

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>PLN00023 GTP-binding protein; Provisional

Probab=99.91  E-value=3.8e-23  Score=153.30  Aligned_cols=134  Identities=19%  Similarity=0.343  Sum_probs=105.6

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe---------------cCeEEEEEEcCC
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV---------------SNSKLVFWDLGG   77 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---------------~~~~~~i~D~~G   77 (170)
                      ...+||+++|+.|+|||||++++..      +.+...+.+|++..+.  .+.+               +...+.||||+|
T Consensus        19 ~~~iKIVLLGdsGVGKTSLI~rf~~------g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAG   92 (334)
T PLN00023         19 CGQVRVLVVGDSGVGKSSLVHLIVK------GSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSG   92 (334)
T ss_pred             ccceEEEEECCCCCcHHHHHHHHhc------CCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCC
Confidence            4568999999999999999999986      4444556677766543  2332               235699999999


Q ss_pred             CCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC-----------CCCCcEEEEeeCCCccccC-----
Q 030848           78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED-----------LQGAPLLILANKQDLPDAV-----  141 (170)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ii~v~nK~D~~~~~-----  141 (170)
                      ++.+..++..+++.++++|+|||+++..+++.+..|+..+.....           ..+.|+++|+||+|+.+..     
T Consensus        93 qErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~  172 (334)
T PLN00023         93 HERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGS  172 (334)
T ss_pred             ChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccc
Confidence            999999999999999999999999999999999999998876421           1358999999999996531     


Q ss_pred             ---CHHHHHhHhCccc
Q 030848          142 ---SADELARYLDLKK  154 (170)
Q Consensus       142 ---~~~~~~~~~~~~~  154 (170)
                         ..++..+.+...+
T Consensus       173 s~~~~e~a~~~A~~~g  188 (334)
T PLN00023        173 SGNLVDAARQWVEKQG  188 (334)
T ss_pred             ccccHHHHHHHHHHcC
Confidence               3556666665433

>cd01898 Obg Obg subfamily

Probab=99.90  E-value=1e-22  Score=140.25  Aligned_cols=144  Identities=26%  Similarity=0.315  Sum_probs=95.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCe-EEEEEEcCCCCc-------chhhHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS-KLVFWDLGGQPG-------LRSIWEKYYE   90 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~D~~G~~~-------~~~~~~~~~~   90 (170)
                      +|+++|.+|+|||||+|++.+..........    .+.......+...+. .+.+|||||..+       +...+...++
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~----~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPF----TTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIE   77 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCc----cccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHH
Confidence            6899999999999999999763221111111    122223333455555 899999999531       1222223345


Q ss_pred             ccCEEEEEEeCCCc-ccHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCccccCCHHHHHh-HhCccccccceeEEEeeec
Q 030848           91 EAHAVVFVIDAACP-SRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPDAVSADELAR-YLDLKKLDERVCMFEAVSG  167 (170)
Q Consensus        91 ~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~-~~~~~ii~v~nK~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Sa  167 (170)
                      .+|++++|+|++++ .+++....|...+..... ..+.|+++++||+|+.+.....+..+ ...    .....+++++||
T Consensus        78 ~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa  153 (170)
T cd01898          78 RTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLK----ELWGKPVFPISA  153 (170)
T ss_pred             hCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHh----hCCCCCEEEEec
Confidence            69999999999998 788888888777755421 24689999999999976444333332 222    113567999999


Q ss_pred             cCC
Q 030848          168 YDG  170 (170)
Q Consensus       168 ~~g  170 (170)
                      ++|
T Consensus       154 ~~~  156 (170)
T cd01898         154 LTG  156 (170)
T ss_pred             CCC
Confidence            976

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.90  E-value=2.6e-24  Score=141.64  Aligned_cols=143  Identities=22%  Similarity=0.345  Sum_probs=114.7

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee--EEEE--EecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRI--EVSNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      -.+|+++.|+.=+|||||+-++..      +.+......|+...  ...+  ......+.||||+|++.+...-+.|++.
T Consensus        12 ~~FK~VLLGEGCVGKtSLVLRy~E------nkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRg   85 (218)
T KOG0088|consen   12 FKFKIVLLGEGCVGKTSLVLRYVE------NKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRG   85 (218)
T ss_pred             eeeEEEEEcCCccchhHHHHHHHH------hhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeC
Confidence            458999999999999999988865      22222222221111  1122  2345679999999999999999999999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +|++|+|||+++.++|+.++.|..++....+ ...-+++|+||+|+..  ..+.++.+.++.     .....++++||+.
T Consensus        86 SnGalLVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEeeR~Vt~qeAe~YAe-----svGA~y~eTSAk~  159 (218)
T KOG0088|consen   86 SNGALLVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEERQVTRQEAEAYAE-----SVGALYMETSAKD  159 (218)
T ss_pred             CCceEEEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHhhhhhHHHHHHHHH-----hhchhheeccccc
Confidence            9999999999999999999999999987765 6678999999999986  678899999888     6777899999986


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      +
T Consensus       160 N  160 (218)
T KOG0088|consen  160 N  160 (218)
T ss_pred             c
Confidence            4

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=5.1e-23  Score=133.40  Aligned_cols=143  Identities=24%  Similarity=0.379  Sum_probs=118.6

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE----EEEecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      ..+|..++|+.|+|||+|+..+..      ..+-..++.++++.+.    .+.++..++++|||.|+++++.....|++.
T Consensus        10 yifkyiiigdmgvgkscllhqfte------kkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrg   83 (215)
T KOG0097|consen   10 YIFKYIIIGDMGVGKSCLLHQFTE------KKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRG   83 (215)
T ss_pred             heEEEEEEccccccHHHHHHHHHH------HHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence            457889999999999999999865      2333344455555433    456677899999999999999999999999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +.+.+.|+|++...++..+..|+....+.. .++.-+++++||.|+..  ...-+|..++..     ++...|.++|||+
T Consensus        84 aagalmvyditrrstynhlsswl~dar~lt-npnt~i~lignkadle~qrdv~yeeak~fae-----engl~fle~sakt  157 (215)
T KOG0097|consen   84 AAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLESQRDVTYEEAKEFAE-----ENGLMFLEASAKT  157 (215)
T ss_pred             ccceeEEEEehhhhhhhhHHHHHhhhhccC-CCceEEEEecchhhhhhcccCcHHHHHHHHh-----hcCeEEEEecccc
Confidence            999999999999999999988888775543 47888999999999986  577888888887     7788899999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       158 g  158 (215)
T KOG0097|consen  158 G  158 (215)
T ss_pred             c
Confidence            7

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.90  E-value=3.3e-22  Score=137.49  Aligned_cols=142  Identities=19%  Similarity=0.211  Sum_probs=93.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcc----h-----hhHHHH
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL----R-----SIWEKY   88 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~-----~~~~~~   88 (170)
                      .+|+++|.+|+|||||++++.+......    .....|.......+...+..+.+|||||....    .     ......
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~   76 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVA----PYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITAL   76 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccC----CCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHH
Confidence            3789999999999999999987321111    11122444444455566789999999996321    0     111111


Q ss_pred             hhccCEEEEEEeCCCcccH--HHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeee
Q 030848           89 YEEAHAVVFVIDAACPSRF--EDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVS  166 (170)
Q Consensus        89 ~~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  166 (170)
                      ...+|++|+|+|+++..++  +....++..+....  .+.|+++++||+|+.+.....+..+...     ....++++||
T Consensus        77 ~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~S  149 (168)
T cd01897          77 AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSEIEEEEE-----LEGEEVLKIS  149 (168)
T ss_pred             HhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHHHHHhhh-----hccCceEEEE
Confidence            2346899999999987653  55556666664432  4789999999999976444333323222     3457899999


Q ss_pred             ccCC
Q 030848          167 GYDG  170 (170)
Q Consensus       167 a~~g  170 (170)
                      |++|
T Consensus       150 a~~~  153 (168)
T cd01897         150 TLTE  153 (168)
T ss_pred             eccc
Confidence            9986

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04171 SelB SelB subfamily

Probab=99.89  E-value=1.7e-22  Score=138.11  Aligned_cols=144  Identities=20%  Similarity=0.161  Sum_probs=91.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcc--cCCcceeEEEEEec-CeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI--VPTVGLNIGRIEVS-NSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~~~   94 (170)
                      +.|+++|.+|+|||||++++.+...   +......  ..+.+.....+... +..+.+|||||++.+......+++.+|+
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~---~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~   77 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIET---DRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDL   77 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCccc---ccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCE
Confidence            4689999999999999999975211   1111111  12333434444544 6789999999999887766777889999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC----HHHHHhHhCccccccceeEEEeeeccCC
Q 030848           95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS----ADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +++|+|+++... ......+..+ ...  ...|+++++||+|+.+...    .+++.+.++...  ....+++++||++|
T Consensus        78 ii~V~d~~~~~~-~~~~~~~~~~-~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~  151 (164)
T cd04171          78 VLLVVAADEGIM-PQTREHLEIL-ELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTF--LADAPIFPVSAVTG  151 (164)
T ss_pred             EEEEEECCCCcc-HhHHHHHHHH-HHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcC--cCCCcEEEEeCCCC
Confidence            999999986321 1122222211 111  2348999999999976432    233333333111  13568999999986

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.89  E-value=7.5e-22  Score=139.06  Aligned_cols=148  Identities=20%  Similarity=0.199  Sum_probs=98.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCC------------CcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhH
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP------------DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIW   85 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~   85 (170)
                      .+|+++|.+++|||||++++............            .....+.......+..++..+.+|||||++.+...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            47999999999999999999752211111100            001112222333466778899999999999999999


Q ss_pred             HHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC---HHHHHhHhCcccc--cccee
Q 030848           86 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLDLKKL--DERVC  160 (170)
Q Consensus        86 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~---~~~~~~~~~~~~~--~~~~~  160 (170)
                      ..+++.+|++++|+|+++.. ......++.....    .+.|+++++||+|+.+...   .+++.+.++....  ....+
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF  157 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence            99999999999999998743 2333333333322    3678999999999975332   2333443321111  22367


Q ss_pred             EEEeeeccCC
Q 030848          161 MFEAVSGYDG  170 (170)
Q Consensus       161 ~~~~~Sa~~g  170 (170)
                      +++++||++|
T Consensus       158 ~iv~~Sa~~g  167 (194)
T cd01891         158 PVLYASAKNG  167 (194)
T ss_pred             CEEEeehhcc
Confidence            8999999986

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.89  E-value=1.6e-24  Score=139.01  Aligned_cols=137  Identities=29%  Similarity=0.486  Sum_probs=109.1

Q ss_pred             EEcCCCCChHHHHHHHHhhcccCCCCC-CCcccCCcceeEE----EEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEE
Q 030848           22 ILGIDKAGKTTLLEKLKSVYSNVEGLP-PDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVV   96 (170)
Q Consensus        22 vvG~~~~GKSsl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   96 (170)
                      ++|++++|||.|+-++..      +.+ ...+-.|+++.+.    .++...+++++|||+||+++++....|++++|+.+
T Consensus         2 llgds~~gktcllir~kd------gafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~all   75 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKD------GAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALL   75 (192)
T ss_pred             ccccCccCceEEEEEecc------CceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceee
Confidence            689999999999877633      111 1233345555443    23445678999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           97 FVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        97 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++||+.+..+|++...|+.++-++.. ..+.+.+++||+|+..  ....++.++...     ...+||+++|||+|
T Consensus        76 llydiankasfdn~~~wlsei~ey~k-~~v~l~llgnk~d~a~er~v~~ddg~kla~-----~y~ipfmetsaktg  145 (192)
T KOG0083|consen   76 LLYDIANKASFDNCQAWLSEIHEYAK-EAVALMLLGNKCDLAHERAVKRDDGEKLAE-----AYGIPFMETSAKTG  145 (192)
T ss_pred             eeeecccchhHHHHHHHHHHHHHHHH-hhHhHhhhccccccchhhccccchHHHHHH-----HHCCCceecccccc
Confidence            99999999999999999999977643 5678899999999954  566666666666     67789999999997

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.89  E-value=2.1e-21  Score=131.23  Aligned_cols=143  Identities=24%  Similarity=0.301  Sum_probs=102.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE--EEecC--eEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      ++||+++|.+|+|||||++++...      .......+++......  +...+  ..+.+||+||++.+...+..+.+.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~   74 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGN------KFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAV   74 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCC------CCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhh
Confidence            479999999999999999999872      2222333344444333  44555  6789999999999988888888999


Q ss_pred             CEEEEEEeCCCc-ccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACP-SRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +.++.++|.... .++.... .+...+..... .+.|+++++||+|+.......+....+..    ....+++++||++|
T Consensus        75 ~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~sa~~~  149 (161)
T TIGR00231        75 ESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAK----LNGEPIIPLSAETG  149 (161)
T ss_pred             hEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhh----ccCCceEEeecCCC
Confidence            999999999876 6665554 55555554443 27899999999999765444444444432    22346999999876

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01890 LepA LepA subfamily

Probab=99.89  E-value=1.6e-21  Score=135.40  Aligned_cols=145  Identities=18%  Similarity=0.193  Sum_probs=93.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCC-CCCCcccCCc------ceeE----EEE-----EecCeEEEEEEcCCCCcch
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEG-LPPDRIVPTV------GLNI----GRI-----EVSNSKLVFWDLGGQPGLR   82 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~-~~~~~~~~~~------~~~~----~~~-----~~~~~~~~i~D~~G~~~~~   82 (170)
                      +|+++|++++|||||++++.+....... .....+.++.      +...    ...     +..+..+.+|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            6899999999999999999763221111 1111111111      1111    112     3356779999999999999


Q ss_pred             hhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEE
Q 030848           83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMF  162 (170)
Q Consensus        83 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (170)
                      ..+..+++.+|++|+|+|+++..+.+....+.. ...    .+.|+++++||+|+.+........+..+...  ....++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~-~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~--~~~~~~  154 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYL-ALE----NNLEIIPVINKIDLPSADPERVKQQIEDVLG--LDPSEA  154 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHH-HHH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhC--CCcccE
Confidence            888999999999999999998766655444432 222    4678999999999865322211112211111  122358


Q ss_pred             EeeeccCC
Q 030848          163 EAVSGYDG  170 (170)
Q Consensus       163 ~~~Sa~~g  170 (170)
                      +++||++|
T Consensus       155 ~~~Sa~~g  162 (179)
T cd01890         155 ILVSAKTG  162 (179)
T ss_pred             EEeeccCC
Confidence            99999987

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=9.3e-22  Score=148.39  Aligned_cols=144  Identities=23%  Similarity=0.300  Sum_probs=101.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe-cCeEEEEEEcCCCCc-------chhhHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQPG-------LRSIWEKYY   89 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~-------~~~~~~~~~   89 (170)
                      ..|+++|.++||||||+|++....+.+.....++..|+    ...+.. ...++.+||+||..+       +...+..++
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~----~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi  234 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPN----LGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHI  234 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCce----EEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHh
Confidence            57899999999999999999875444443333333333    334555 456799999999432       333445566


Q ss_pred             hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCccccCCHH--HHHhHhCccccccceeEEEeee
Q 030848           90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPDAVSAD--ELARYLDLKKLDERVCMFEAVS  166 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~ii~v~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~S  166 (170)
                      ++++++++|+|+++.++++....|..++..+.. ..+.|+++|+||+|+.+.....  +....+.     ....+++++|
T Consensus       235 e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~-----~~~~~i~~iS  309 (335)
T PRK12299        235 ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELA-----ALGGPVFLIS  309 (335)
T ss_pred             hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHH-----hcCCCEEEEE
Confidence            789999999999988888888888888765432 2468999999999997643322  2222222     2346799999


Q ss_pred             ccCC
Q 030848          167 GYDG  170 (170)
Q Consensus       167 a~~g  170 (170)
                      |++|
T Consensus       310 Aktg  313 (335)
T PRK12299        310 AVTG  313 (335)
T ss_pred             cCCC
Confidence            9986

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.88  E-value=5.7e-23  Score=142.04  Aligned_cols=142  Identities=20%  Similarity=0.346  Sum_probs=109.9

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EE-EecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RI-EVSNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      ..+|+++||+.++|||+++..+..      +.++..+.||.-.++.   .+ +.+...+.+|||+||+++...++..+++
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~------~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~   76 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTT------NAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQ   76 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEecc------CcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCC
Confidence            468999999999999999988866      5666667676665443   34 3667889999999999999988888899


Q ss_pred             cCEEEEEEeCCCcccHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCccc--------------cCCHHHHHhHhCccccc
Q 030848           92 AHAVVFVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKLD  156 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~ii~v~nK~D~~~--------------~~~~~~~~~~~~~~~~~  156 (170)
                      +|++|+||++.++.++++... |+-++....  ++.|+++|++|.||.+              ....++..+..+.    
T Consensus        77 tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~----  150 (198)
T KOG0393|consen   77 TDVFLLCFSVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKE----  150 (198)
T ss_pred             CCEEEEEEEcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHH----
Confidence            999999999999999988654 555555544  8999999999999984              2233344444442    


Q ss_pred             cceeEEEeeeccC
Q 030848          157 ERVCMFEAVSGYD  169 (170)
Q Consensus       157 ~~~~~~~~~Sa~~  169 (170)
                      .....|+||||++
T Consensus       151 iga~~y~EcSa~t  163 (198)
T KOG0393|consen  151 IGAVKYLECSALT  163 (198)
T ss_pred             hCcceeeeehhhh
Confidence            2236799999986

>cd01878 HflX HflX subfamily

Probab=99.88  E-value=2.2e-21  Score=137.68  Aligned_cols=142  Identities=23%  Similarity=0.281  Sum_probs=93.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCe-EEEEEEcCCCCc---------chhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS-KLVFWDLGGQPG---------LRSI   84 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~D~~G~~~---------~~~~   84 (170)
                      ...++|+++|++|+|||||+|++.+......    ....++.......+...+. .+.+|||||...         +...
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~  114 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAE----DQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRST  114 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccC----CccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHH
Confidence            4458999999999999999999987321111    1122333333334444443 899999999632         1111


Q ss_pred             HHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEe
Q 030848           85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA  164 (170)
Q Consensus        85 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (170)
                      + ..+..+|++++|+|++++.++.....+...+. .....+.|+++|+||+|+.+.....   +.+.     ....++++
T Consensus       115 ~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~-~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~-----~~~~~~~~  184 (204)
T cd01878         115 L-EEVAEADLLLHVVDASDPDYEEQIETVEKVLK-ELGAEDIPMILVLNKIDLLDDEELE---ERLE-----AGRPDAVF  184 (204)
T ss_pred             H-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHH-HcCcCCCCEEEEEEccccCChHHHH---HHhh-----cCCCceEE
Confidence            1 23568999999999999888776655544443 3333568999999999997643322   2222     34567999


Q ss_pred             eeccCC
Q 030848          165 VSGYDG  170 (170)
Q Consensus       165 ~Sa~~g  170 (170)
                      +||++|
T Consensus       185 ~Sa~~~  190 (204)
T cd01878         185 ISAKTG  190 (204)
T ss_pred             EEcCCC
Confidence            999986

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.88  E-value=1.6e-21  Score=146.91  Aligned_cols=146  Identities=23%  Similarity=0.324  Sum_probs=101.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC-eEEEEEEcCCCCc-------chhhHHHH
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPG-------LRSIWEKY   88 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~-------~~~~~~~~   88 (170)
                      ...|+++|.+++|||||++++....+.+.....++..|+.+    .+...+ ..+.+||+||..+       +...+...
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig----~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrh  232 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLG----VVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKH  232 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEE----EEEeCCceEEEEEeCCCcccCCcccccHHHHHHHH
Confidence            36799999999999999999987544443333444444433    355555 7899999999532       33344445


Q ss_pred             hhccCEEEEEEeCCCc---ccHHHHHHHHHHHHcCC-CCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEe
Q 030848           89 YEEAHAVVFVIDAACP---SRFEDSKTALEKVLRNE-DLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA  164 (170)
Q Consensus        89 ~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~-~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (170)
                      +.+++++++|+|+++.   .+++....|..++..+. ...+.|+++|+||+|+.++...++..+.+..    ....++++
T Consensus       233 ierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~----~~~~~vi~  308 (329)
T TIGR02729       233 IERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKK----ALGKPVFP  308 (329)
T ss_pred             HHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHH----HcCCcEEE
Confidence            6689999999999976   56777777776665442 2247899999999999765444444443331    22357999


Q ss_pred             eeccCC
Q 030848          165 VSGYDG  170 (170)
Q Consensus       165 ~Sa~~g  170 (170)
                      +||++|
T Consensus       309 iSAktg  314 (329)
T TIGR02729       309 ISALTG  314 (329)
T ss_pred             EEccCC
Confidence            999975

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.87  E-value=5.9e-22  Score=128.97  Aligned_cols=116  Identities=26%  Similarity=0.470  Sum_probs=81.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV   98 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   98 (170)
                      ||+|+|++|+|||||++++.+...............+..............+.+||++|++.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            79999999999999999998732220111112222333333334444555699999999988887777778999999999


Q ss_pred             EeCCCcccHHHHHHH---HHHHHcCCCCCCCcEEEEeeCCC
Q 030848           99 IDAACPSRFEDSKTA---LEKVLRNEDLQGAPLLILANKQD  136 (170)
Q Consensus        99 ~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~ii~v~nK~D  136 (170)
                      ||++++.+++.+..+   +..+...  .++.|+++++||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence            999999999887554   4444332  24699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=1.5e-21  Score=126.70  Aligned_cols=159  Identities=37%  Similarity=0.629  Sum_probs=136.0

Q ss_pred             hHHHHhhhccC-ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh
Q 030848            5 FYGLWKYIFTK-TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS   83 (170)
Q Consensus         5 ~~~~~~~~~~~-~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   83 (170)
                      ++..|...... .+++++++|--|+||+++..++.-       .......|+++.+...+.+++.++++||+.|+-.++.
T Consensus         5 ~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqv-------gevvttkPtigfnve~v~yKNLk~~vwdLggqtSirP   77 (182)
T KOG0072|consen    5 FSSLFKALQGPEREMRILILGLDGAGKTTILYRLQV-------GEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRP   77 (182)
T ss_pred             HHHHHHHhcCCccceEEEEeeccCCCeeEEEEEccc-------CcccccCCCCCcCccccccccccceeeEccCcccccH
Confidence            33344333333 789999999999999999988743       1223455788888888899999999999999999999


Q ss_pred             hHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEE
Q 030848           84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFE  163 (170)
Q Consensus        84 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (170)
                      .|.-|+.+.+.+|||+|.+|.+........+..++......+..++++.||.|........|....++...+..+.+.++
T Consensus        78 yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv  157 (182)
T KOG0072|consen   78 YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIV  157 (182)
T ss_pred             HHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEE
Confidence            99999999999999999999998888888888888776667788999999999999999999999999888888899999


Q ss_pred             eeeccCC
Q 030848          164 AVSGYDG  170 (170)
Q Consensus       164 ~~Sa~~g  170 (170)
                      ++||.+|
T Consensus       158 ~tSA~kg  164 (182)
T KOG0072|consen  158 KTSAVKG  164 (182)
T ss_pred             eeccccc
Confidence            9999886

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.86  E-value=7.7e-21  Score=127.26  Aligned_cols=138  Identities=28%  Similarity=0.430  Sum_probs=99.7

Q ss_pred             EEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe----cCeEEEEEEcCCCCcchhhHHHHhhccCEEEE
Q 030848           22 ILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF   97 (170)
Q Consensus        22 vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   97 (170)
                      ++|++|+|||||++++.+....     .....++. ........    .+..+.+||+||..........+++.+|++++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~-----~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   74 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFV-----PEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIIL   74 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcC-----Ccccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEE
Confidence            5899999999999999872221     12222232 33333333    26789999999988887777778899999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHH---hHhCccccccceeEEEeeeccCC
Q 030848           98 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELA---RYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        98 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      |+|++++.+......++..........+.|+++++||+|+.+....+...   ...     ....++++++|+++|
T Consensus        75 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~  145 (157)
T cd00882          75 VYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLA-----KELGVPYFETSAKTG  145 (157)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHH-----hhcCCcEEEEecCCC
Confidence            99999998888887774444444445789999999999998755544432   222     245678999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.86  E-value=4.5e-20  Score=128.84  Aligned_cols=147  Identities=22%  Similarity=0.224  Sum_probs=99.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCC-C-----------CcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHH
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLP-P-----------DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWE   86 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   86 (170)
                      +|+++|.+|+|||||+|++.+......... .           .....+...........+..+.+|||||...+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            489999999999999999976322211100 0           0011222333334555678899999999988888888


Q ss_pred             HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCH----HHHHhHhCcccc-------
Q 030848           87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA----DELARYLDLKKL-------  155 (170)
Q Consensus        87 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~----~~~~~~~~~~~~-------  155 (170)
                      .+++.+|++++|+|++++..... ...+.....    .+.|+++++||+|+..+...    .++.+.++....       
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG  155 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence            88999999999999987665432 233333322    47899999999999864433    334444443222       


Q ss_pred             --ccceeEEEeeeccCC
Q 030848          156 --DERVCMFEAVSGYDG  170 (170)
Q Consensus       156 --~~~~~~~~~~Sa~~g  170 (170)
                        .....+++++||++|
T Consensus       156 ~~~~~~~~v~~~Sa~~g  172 (189)
T cd00881         156 TRNGLLVPIVPGSALTG  172 (189)
T ss_pred             cccCCcceEEEEecccC
Confidence              345788999999986

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.86  E-value=2.1e-21  Score=130.16  Aligned_cols=123  Identities=19%  Similarity=0.163  Sum_probs=81.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC-----cchhhHHHHhhccC
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-----GLRSIWEKYYEEAH   93 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~~   93 (170)
                      ||+++|++|+|||||++++.+.      ..  .+.+|....     ...   .+|||||+.     .+.... ..++++|
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~------~~--~~~~t~~~~-----~~~---~~iDt~G~~~~~~~~~~~~~-~~~~~ad   64 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGE------EI--LYKKTQAVE-----YND---GAIDTPGEYVENRRLYSALI-VTAADAD   64 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCC------cc--ccccceeEE-----EcC---eeecCchhhhhhHHHHHHHH-HHhhcCC
Confidence            7999999999999999999762      11  122333222     222   689999973     222232 3468999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++++|+|++++.++... .|. ..   .   ..|+++++||+|+.+ ....++..+.++..    ...+++++||++|
T Consensus        65 ~vilv~d~~~~~s~~~~-~~~-~~---~---~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~  130 (142)
T TIGR02528        65 VIALVQSATDPESRFPP-GFA-SI---F---VKPVIGLVTKIDLAEADVDIERAKELLETA----GAEPIFEISSVDE  130 (142)
T ss_pred             EEEEEecCCCCCcCCCh-hHH-Hh---c---cCCeEEEEEeeccCCcccCHHHHHHHHHHc----CCCcEEEEecCCC
Confidence            99999999999887542 222 21   1   238999999999965 33444444544421    1237999999986

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.86  E-value=1.6e-20  Score=129.01  Aligned_cols=142  Identities=20%  Similarity=0.202  Sum_probs=91.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe---cCeEEEEEEcCCCCcchhhHHHHhhccCEE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---SNSKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   95 (170)
                      .|+++|.+|+|||||++++...  ......  ....+.......+..   .+..+.+|||||++.+...+..+++.+|++
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~--~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~i   77 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKT--NVAAGE--AGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIA   77 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhc--cccccc--CCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEE
Confidence            5899999999999999999762  111111  111222222233333   367899999999998888888888999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC---ccc--cccceeEEEeeeccCC
Q 030848           96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD---LKK--LDERVCMFEAVSGYDG  170 (170)
Q Consensus        96 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~Sa~~g  170 (170)
                      ++|+|+++....+ ....+..+..    .+.|+++++||+|+.... .+...+.+.   ...  .....++++++||++|
T Consensus        78 l~v~d~~~~~~~~-~~~~~~~~~~----~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  151 (168)
T cd01887          78 ILVVAADDGVMPQ-TIEAIKLAKA----ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTG  151 (168)
T ss_pred             EEEEECCCCccHH-HHHHHHHHHH----cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccC
Confidence            9999998754322 2222222222    467999999999987532 222222221   111  1134578999999886

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.86  E-value=1.1e-20  Score=131.59  Aligned_cols=147  Identities=22%  Similarity=0.260  Sum_probs=90.2

Q ss_pred             hhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC----------c
Q 030848           11 YIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP----------G   80 (170)
Q Consensus        11 ~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~   80 (170)
                      ..+.....+|+++|.+|+|||||+|++.+..  ...........|.....  +... ..+.+|||||..          .
T Consensus        12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~--~~~~~~~~~~~t~~~~~--~~~~-~~~~liDtpG~~~~~~~~~~~~~   86 (179)
T TIGR03598        12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRK--KLARTSKTPGRTQLINF--FEVN-DGFRLVDLPGYGYAKVSKEEKEK   86 (179)
T ss_pred             hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCC--CcccccCCCCcceEEEE--EEeC-CcEEEEeCCCCccccCChhHHHH
Confidence            4455778999999999999999999997621  01111111222323322  2222 379999999942          1


Q ss_pred             chhhHHHHhh---ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCH----HHHHhHhCcc
Q 030848           81 LRSIWEKYYE---EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA----DELARYLDLK  153 (170)
Q Consensus        81 ~~~~~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~----~~~~~~~~~~  153 (170)
                      +......+++   .++++++|+|++++-+.... ..+..+ ..   .+.|+++++||+|+.+....    +++.+.++. 
T Consensus        87 ~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~-~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~-  160 (179)
T TIGR03598        87 WQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWL-RE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKK-  160 (179)
T ss_pred             HHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHH-HH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhh-
Confidence            2223334444   35799999999876554433 222222 22   46899999999999764333    333334431 


Q ss_pred             ccccceeEEEeeeccCC
Q 030848          154 KLDERVCMFEAVSGYDG  170 (170)
Q Consensus       154 ~~~~~~~~~~~~Sa~~g  170 (170)
                        ....++++++||++|
T Consensus       161 --~~~~~~v~~~Sa~~g  175 (179)
T TIGR03598       161 --DADDPSVQLFSSLKK  175 (179)
T ss_pred             --ccCCCceEEEECCCC
Confidence              123458999999987

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.86  E-value=1.2e-20  Score=135.13  Aligned_cols=119  Identities=33%  Similarity=0.486  Sum_probs=93.2

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec----CeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS----NSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      ..+||+++|+.|+|||||++++..      +.....+.+++...+......    ...+.+|||+|+++++..+..++..
T Consensus         4 ~~~kivv~G~~g~GKTtl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~   77 (219)
T COG1100           4 KEFKIVVLGDGGVGKTTLLNRLVG------DEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRG   77 (219)
T ss_pred             ceEEEEEEcCCCccHHHHHHHHhc------CcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcC
Confidence            448999999999999999999987      555555656655544433322    4569999999999999999999999


Q ss_pred             cCEEEEEEeCCCccc-HHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC
Q 030848           92 AHAVVFVIDAACPSR-FEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV  141 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~  141 (170)
                      ++++++|+|..+..+ .+....|...+..... ...|+++++||+|+....
T Consensus        78 ~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~-~~~~iilv~nK~Dl~~~~  127 (219)
T COG1100          78 ANGILIVYDSTLRESSDELTEEWLEELRELAP-DDVPILLVGNKIDLFDEQ  127 (219)
T ss_pred             CCEEEEEEecccchhhhHHHHHHHHHHHHhCC-CCceEEEEecccccccch
Confidence            999999999999554 4555666656554432 578999999999998753

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.85  E-value=2.5e-20  Score=130.68  Aligned_cols=151  Identities=21%  Similarity=0.256  Sum_probs=103.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCC------------C--CCcccCCcceeEEEEE--ecCeEEEEEEcCCC
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL------------P--PDRIVPTVGLNIGRIE--VSNSKLVFWDLGGQ   78 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~------------~--~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~   78 (170)
                      ++.++|+++|+.++|||||++++..........            .  .....-+.......+.  .....+.++|+||+
T Consensus         1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~   80 (188)
T PF00009_consen    1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH   80 (188)
T ss_dssp             STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred             CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence            467899999999999999999997643322110            0  0112345555566666  77889999999999


Q ss_pred             CcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC---CHHHHH-hHhCccc
Q 030848           79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV---SADELA-RYLDLKK  154 (170)
Q Consensus        79 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~---~~~~~~-~~~~~~~  154 (170)
                      ..+.......++.+|++|+|+|+.+.-.. ...+.+..+..    .+.|+++++||+|+....   ..+++. ..++...
T Consensus        81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~----~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~  155 (188)
T PF00009_consen   81 EDFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILRE----LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG  155 (188)
T ss_dssp             HHHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHH----TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             cceeecccceecccccceeeeeccccccc-ccccccccccc----cccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence            99988888888999999999999876443 33344444433    477899999999998421   122222 1222223


Q ss_pred             ccc-ceeEEEeeeccCC
Q 030848          155 LDE-RVCMFEAVSGYDG  170 (170)
Q Consensus       155 ~~~-~~~~~~~~Sa~~g  170 (170)
                      ... ..+|++++||++|
T Consensus       156 ~~~~~~~~vi~~Sa~~g  172 (188)
T PF00009_consen  156 ENGEEIVPVIPISALTG  172 (188)
T ss_dssp             STTTSTEEEEEEBTTTT
T ss_pred             cCccccceEEEEecCCC
Confidence            333 4789999999987

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.85  E-value=1.3e-20  Score=130.27  Aligned_cols=142  Identities=24%  Similarity=0.280  Sum_probs=92.2

Q ss_pred             EEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec-CeEEEEEEcCCCCc-------chhhHHHHhhccC
Q 030848           22 ILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPG-------LRSIWEKYYEEAH   93 (170)
Q Consensus        22 vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~-------~~~~~~~~~~~~~   93 (170)
                      ++|++|+|||||+|++.+......    .....|.......+... +..+.+|||||...       +...+...++.+|
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d   76 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVA----NYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRAD   76 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCcccc----CCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccC
Confidence            589999999999999987321111    11112223333345566 78899999999532       1212334568899


Q ss_pred             EEEEEEeCCCc------ccHHHHHHHHHHHHcCCC------CCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeE
Q 030848           94 AVVFVIDAACP------SRFEDSKTALEKVLRNED------LQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCM  161 (170)
Q Consensus        94 ~~i~v~d~~~~------~~~~~~~~~~~~~~~~~~------~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  161 (170)
                      ++++|+|+++.      .++.+...+...+.....      ..+.|+++++||+|+.......+.....   .......+
T Consensus        77 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~---~~~~~~~~  153 (176)
T cd01881          77 AILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRE---LALEEGAE  153 (176)
T ss_pred             EEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHH---HhcCCCCC
Confidence            99999999988      466777667666654432      1478999999999997644433331111   11234567


Q ss_pred             EEeeeccCC
Q 030848          162 FEAVSGYDG  170 (170)
Q Consensus       162 ~~~~Sa~~g  170 (170)
                      ++++||++|
T Consensus       154 ~~~~Sa~~~  162 (176)
T cd01881         154 VVPISAKTE  162 (176)
T ss_pred             EEEEehhhh
Confidence            999999875

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK15494 era GTPase Era; Provisional

Probab=99.85  E-value=2.7e-20  Score=141.10  Aligned_cols=145  Identities=19%  Similarity=0.296  Sum_probs=92.2

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcc-h-------hhH
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL-R-------SIW   85 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~-------~~~   85 (170)
                      +++..+|+++|.+|+|||||+|++.+...  . ...+....|.......+...+.++.+|||||..+. .       ...
T Consensus        49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~--~-ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~  125 (339)
T PRK15494         49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKL--S-IVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCA  125 (339)
T ss_pred             ccceeEEEEEcCCCCCHHHHHHHHhCCce--e-eccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHH
Confidence            45667999999999999999999976211  1 11122223333334456677889999999997432 1       111


Q ss_pred             HHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEee
Q 030848           86 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAV  165 (170)
Q Consensus        86 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (170)
                      ...++.+|++|+|+|..+  ++.....++...+..   .+.|.++|+||+|+.+. ...++.+.+...   ....+++++
T Consensus       126 ~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---~~~~~i~~i  196 (339)
T PRK15494        126 WSSLHSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---HPDSLLFPI  196 (339)
T ss_pred             HHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---CCCcEEEEE
Confidence            234689999999999765  344443333333222   24567889999999754 344555554411   123579999


Q ss_pred             eccCC
Q 030848          166 SGYDG  170 (170)
Q Consensus       166 Sa~~g  170 (170)
                      ||++|
T Consensus       197 SAktg  201 (339)
T PRK15494        197 SALSG  201 (339)
T ss_pred             eccCc
Confidence            99986

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.85  E-value=5.2e-20  Score=124.75  Aligned_cols=133  Identities=24%  Similarity=0.214  Sum_probs=91.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh--------hHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS--------IWEKYY   89 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~   89 (170)
                      ++|+++|++|+|||||++++.+.......   .....+.......+...+..+.+|||||..+...        ....++
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~   78 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVS---DIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAI   78 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEecc---CCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHH
Confidence            58999999999999999999762211111   1112222333334556677899999999654422        123456


Q ss_pred             hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +++|++++|+|++++.+......+..       ..+.|+++++||+|+.+....     .     ......+++++||++
T Consensus        79 ~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~-----~-----~~~~~~~~~~~Sa~~  141 (157)
T cd04164          79 EEADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL-----L-----SLLAGKPIIAISAKT  141 (157)
T ss_pred             hhCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc-----c-----cccCCCceEEEECCC
Confidence            78999999999998777665443322       257899999999999764433     1     124456899999987


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       142 ~  142 (157)
T cd04164         142 G  142 (157)
T ss_pred             C
Confidence            6

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.85  E-value=2.3e-20  Score=132.31  Aligned_cols=122  Identities=30%  Similarity=0.437  Sum_probs=89.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE----ecCeEEEEEEcCCCCcchhhHHHHhhcc-C
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE----VSNSKLVFWDLGGQPGLRSIWEKYYEEA-H   93 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~D~~G~~~~~~~~~~~~~~~-~   93 (170)
                      +|+++|++|||||||++++..      +.....+. ++........    ..+..+.+||+||++.++..+..+++.+ +
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~------~~~~~t~~-s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~   74 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTT------GKYRSTVT-SIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAK   74 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhc------CCCCCccC-cEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCC
Confidence            689999999999999999976      22222221 1122222222    2367899999999999998888889998 9


Q ss_pred             EEEEEEeCCCc-ccHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCccccCCHHHHH
Q 030848           94 AVVFVIDAACP-SRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPDAVSADELA  147 (170)
Q Consensus        94 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~--~~~~~ii~v~nK~D~~~~~~~~~~~  147 (170)
                      ++|+|+|+.+. .++..+..++..++....  .+..|+++++||+|+..+.+.+.+.
T Consensus        75 ~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~  131 (203)
T cd04105          75 GIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIK  131 (203)
T ss_pred             EEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHH
Confidence            99999999987 677777777776654321  2579999999999997655544333

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.85  E-value=1.9e-20  Score=146.61  Aligned_cols=146  Identities=23%  Similarity=0.303  Sum_probs=97.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc-------chhhHHHH
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-------LRSIWEKY   88 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~   88 (170)
                      ....|+++|.++||||||+|+|.+..+.+....    ..|.......+...+..+.+||+||..+       +...+..+
T Consensus       158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadyp----fTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrh  233 (500)
T PRK12296        158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYP----FTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRH  233 (500)
T ss_pred             ccceEEEEEcCCCCHHHHHHHHhcCCccccccC----cccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHH
Confidence            346899999999999999999987433332222    2344444556777888999999999421       22233445


Q ss_pred             hhccCEEEEEEeCCCc----ccHHHHHHHHHHHHcCC----------CCCCCcEEEEeeCCCccccCCHH-HHHhHhCcc
Q 030848           89 YEEAHAVVFVIDAACP----SRFEDSKTALEKVLRNE----------DLQGAPLLILANKQDLPDAVSAD-ELARYLDLK  153 (170)
Q Consensus        89 ~~~~~~~i~v~d~~~~----~~~~~~~~~~~~~~~~~----------~~~~~~ii~v~nK~D~~~~~~~~-~~~~~~~~~  153 (170)
                      +.+++++|+|+|+++.    +.++....+..++..+.          ...+.|+++++||+|+++..... .+.+.+.  
T Consensus       234 ieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~--  311 (500)
T PRK12296        234 IERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELE--  311 (500)
T ss_pred             HHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHH--
Confidence            6789999999999753    34555544444443332          23468999999999997543222 2222332  


Q ss_pred             ccccceeEEEeeeccCC
Q 030848          154 KLDERVCMFEAVSGYDG  170 (170)
Q Consensus       154 ~~~~~~~~~~~~Sa~~g  170 (170)
                         ...++++++||++|
T Consensus       312 ---~~g~~Vf~ISA~tg  325 (500)
T PRK12296        312 ---ARGWPVFEVSAASR  325 (500)
T ss_pred             ---HcCCeEEEEECCCC
Confidence               23568999999876

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.85  E-value=3.6e-21  Score=129.75  Aligned_cols=134  Identities=23%  Similarity=0.319  Sum_probs=90.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC----c--chhhHHHHh--
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP----G--LRSIWEKYY--   89 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~--~~~~~~~~~--   89 (170)
                      ++|+++|.|++|||||+|++.+....+.    .....|.......+...+..+.++|+||--    .  -......++  
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~----n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~   76 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVG----NWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLS   76 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEE----ESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceec----CCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhh
Confidence            5899999999999999999988443222    233345566666788889999999999921    1  122223333  


Q ss_pred             hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC----CHHHHHhHhCccccccceeEEEee
Q 030848           90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV----SADELARYLDLKKLDERVCMFEAV  165 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  165 (170)
                      .+.|++++|+|+++.   +.......++..    .+.|+++++||+|+..+.    ..+.+.+.+        ++|++++
T Consensus        77 ~~~D~ii~VvDa~~l---~r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L--------g~pvi~~  141 (156)
T PF02421_consen   77 EKPDLIIVVVDATNL---ERNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERL--------GVPVIPV  141 (156)
T ss_dssp             TSSSEEEEEEEGGGH---HHHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHH--------TS-EEEE
T ss_pred             cCCCEEEEECCCCCH---HHHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHh--------CCCEEEE
Confidence            689999999999863   444555666655    478999999999997743    344444444        4689999


Q ss_pred             eccCC
Q 030848          166 SGYDG  170 (170)
Q Consensus       166 Sa~~g  170 (170)
                      ||++|
T Consensus       142 sa~~~  146 (156)
T PF02421_consen  142 SARTG  146 (156)
T ss_dssp             BTTTT
T ss_pred             EeCCC
Confidence            99986

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.85  E-value=4.3e-20  Score=145.79  Aligned_cols=147  Identities=27%  Similarity=0.235  Sum_probs=94.3

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC----------cchhhH
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP----------GLRSIW   85 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~   85 (170)
                      ..++|+++|.+++|||||+|++.+........   ....|.......+...+..+.+|||||..          .+....
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~---~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~  286 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDD---VAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLR  286 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccC---CCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHH
Confidence            35899999999999999999998632111111   11112222233456677889999999942          222222


Q ss_pred             -HHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEe
Q 030848           86 -EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA  164 (170)
Q Consensus        86 -~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (170)
                       ..+++.+|++++|+|++++.+++... ++..+..    .+.|+++|+||+|+.+........+.+.........+++++
T Consensus       287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~  361 (472)
T PRK03003        287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVN  361 (472)
T ss_pred             HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEE
Confidence             23568999999999999988877653 3333332    47899999999999764332222222221111223468999


Q ss_pred             eeccCC
Q 030848          165 VSGYDG  170 (170)
Q Consensus       165 ~Sa~~g  170 (170)
                      +||++|
T Consensus       362 ~SAk~g  367 (472)
T PRK03003        362 ISAKTG  367 (472)
T ss_pred             EECCCC
Confidence            999987

>cd01889 SelB_euk SelB subfamily

Probab=99.85  E-value=2.8e-20  Score=130.87  Aligned_cols=148  Identities=20%  Similarity=0.180  Sum_probs=90.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcc-cCCCCCCC--cccCCcceeEEEEEec--------------CeEEEEEEcCCCCc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPD--RIVPTVGLNIGRIEVS--------------NSKLVFWDLGGQPG   80 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~--------------~~~~~i~D~~G~~~   80 (170)
                      ++|+++|++++|||||++++..... ........  ....|.+.....+...              +..+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            5899999999999999999975210 00000000  1112333333333332              67899999999876


Q ss_pred             chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHH----HHHhHhCccc--
Q 030848           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSAD----ELARYLDLKK--  154 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~----~~~~~~~~~~--  154 (170)
                      +........+.+|++++|+|+++....+....+.  +...   .+.|+++++||+|+......+    ++.+.+....  
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~  155 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK  155 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            6554445567889999999998754433322221  1111   256999999999997543322    2222222110  


Q ss_pred             cccceeEEEeeeccCC
Q 030848          155 LDERVCMFEAVSGYDG  170 (170)
Q Consensus       155 ~~~~~~~~~~~Sa~~g  170 (170)
                      .....++++++||++|
T Consensus       156 ~~~~~~~vi~iSa~~g  171 (192)
T cd01889         156 TRFKNSPIIPVSAKPG  171 (192)
T ss_pred             cCcCCCCEEEEeccCC
Confidence            1124678999999986

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.85  E-value=5.7e-20  Score=139.69  Aligned_cols=140  Identities=25%  Similarity=0.319  Sum_probs=93.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe-cCeEEEEEEcCCC-Cc--------chhhH
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQ-PG--------LRSIW   85 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~-~~--------~~~~~   85 (170)
                      ..++|+++|.+|+|||||+|++.+.....    .+...+|.+.....+.. .+..+.+|||||. +.        +...+
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v----~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl  263 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYA----ADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL  263 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceee----ccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH
Confidence            44899999999999999999998722111    12223444445555666 4578999999996 21        22222


Q ss_pred             HHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEee
Q 030848           86 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAV  165 (170)
Q Consensus        86 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (170)
                       ..++++|++|+|+|++++.+.+....+.. ++......+.|+++|+||+|+.+...   ......      ...+++++
T Consensus       264 -e~~~~ADlil~VvD~s~~~~~~~~~~~~~-~L~~l~~~~~piIlV~NK~Dl~~~~~---v~~~~~------~~~~~i~i  332 (351)
T TIGR03156       264 -EEVREADLLLHVVDASDPDREEQIEAVEK-VLEELGAEDIPQLLVYNKIDLLDEPR---IERLEE------GYPEAVFV  332 (351)
T ss_pred             -HHHHhCCEEEEEEECCCCchHHHHHHHHH-HHHHhccCCCCEEEEEEeecCCChHh---HHHHHh------CCCCEEEE
Confidence             24688999999999999887766544433 33333335789999999999965322   111111      12358999


Q ss_pred             eccCC
Q 030848          166 SGYDG  170 (170)
Q Consensus       166 Sa~~g  170 (170)
                      ||++|
T Consensus       333 SAktg  337 (351)
T TIGR03156       333 SAKTG  337 (351)
T ss_pred             EccCC
Confidence            99986

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.85  E-value=7.8e-20  Score=142.63  Aligned_cols=137  Identities=22%  Similarity=0.286  Sum_probs=93.4

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccC-CcceeEEEEEecCeEEEEEEcCCCCcchhh--------
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP-TVGLNIGRIEVSNSKLVFWDLGGQPGLRSI--------   84 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------   84 (170)
                      -+..++|+++|++|+|||||+|++.+......    ..+.. |.......+.+.+..+.+|||||..+....        
T Consensus       200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aiv----s~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~  275 (442)
T TIGR00450       200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIV----SDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEK  275 (442)
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHhCCCCccc----CCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHH
Confidence            34668999999999999999999986211111    11211 222333456677889999999997654332        


Q ss_pred             HHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEe
Q 030848           85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA  164 (170)
Q Consensus        85 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (170)
                      ...+++.+|++++|+|++++.+++..  |+..+..    .+.|+++|+||+|+.+. ..+   +..+     ....++++
T Consensus       276 ~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~---~~~~-----~~~~~~~~  340 (442)
T TIGR00450       276 SFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLE---FFVS-----SKVLNSSN  340 (442)
T ss_pred             HHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chh---hhhh-----hcCCceEE
Confidence            23567899999999999988876654  4444422    46799999999999654 221   1122     22346889


Q ss_pred             eeccC
Q 030848          165 VSGYD  169 (170)
Q Consensus       165 ~Sa~~  169 (170)
                      +||++
T Consensus       341 vSak~  345 (442)
T TIGR00450       341 LSAKQ  345 (442)
T ss_pred             EEEec
Confidence            99986

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01895 EngA2 EngA2 subfamily

Probab=99.84  E-value=1.6e-19  Score=124.17  Aligned_cols=146  Identities=22%  Similarity=0.166  Sum_probs=91.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcch-------h----hH
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR-------S----IW   85 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~----~~   85 (170)
                      .++|+++|.+|+|||||++++.+........   ....+.......+...+..+.+|||||.....       .    ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~   78 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSD---IAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRT   78 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccC---CCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHH
Confidence            5789999999999999999997622111111   11112222223345566779999999954321       0    11


Q ss_pred             HHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEE
Q 030848           86 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFE  163 (170)
Q Consensus        86 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~  163 (170)
                      ...++.+|++++|+|++++.+.... ........    .+.|+++++||+|+.+.  ...++..+.++.........+++
T Consensus        79 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (174)
T cd01895          79 LKAIERADVVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIV  153 (174)
T ss_pred             HHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceE
Confidence            2345789999999999988775543 22222222    36899999999999765  34444444444221112346899


Q ss_pred             eeeccCC
Q 030848          164 AVSGYDG  170 (170)
Q Consensus       164 ~~Sa~~g  170 (170)
                      ++||++|
T Consensus       154 ~~Sa~~~  160 (174)
T cd01895         154 FISALTG  160 (174)
T ss_pred             EEeccCC
Confidence            9999976

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.84  E-value=3.4e-20  Score=126.06  Aligned_cols=133  Identities=21%  Similarity=0.239  Sum_probs=86.5

Q ss_pred             EEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh------hHHHHhh--ccC
Q 030848           22 ILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS------IWEKYYE--EAH   93 (170)
Q Consensus        22 vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~--~~~   93 (170)
                      ++|.+|+|||||++++.+...    ........+.......+...+..+.+|||||++.+..      ....++.  .+|
T Consensus         1 l~G~~~~GKssl~~~~~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d   76 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQ----KVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPD   76 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcc----cccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCc
Confidence            589999999999999976211    1111112233333445666678899999999776543      3445554  899


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHH-HHHhHhCccccccceeEEEeeeccCC
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSAD-ELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++++|+|++++...   ..++..+..    .+.|+++++||+|+.+..... +..+...     ....+++++||++|
T Consensus        77 ~vi~v~d~~~~~~~---~~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~iSa~~~  142 (158)
T cd01879          77 LIVNVVDATNLERN---LYLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLSE-----LLGVPVVPTSARKG  142 (158)
T ss_pred             EEEEEeeCCcchhH---HHHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHHH-----hhCCCeEEEEccCC
Confidence            99999999876432   233333332    368999999999997643222 2222222     23468999999876

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.84  E-value=4.7e-20  Score=144.01  Aligned_cols=156  Identities=19%  Similarity=0.201  Sum_probs=101.5

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCC--------------CCC-----------CC--cccCCcceeEEEEEe
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GLP-----------PD--RIVPTVGLNIGRIEV   65 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~--------------~~~-----------~~--~~~~~~~~~~~~~~~   65 (170)
                      ..++.++|+++|++++|||||+++|........              +..           ..  ...-|.......++.
T Consensus         2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~   81 (425)
T PRK12317          2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET   81 (425)
T ss_pred             CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec
Confidence            357889999999999999999999964322211              100           00  122355555556777


Q ss_pred             cCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC---
Q 030848           66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---  142 (170)
Q Consensus        66 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~---  142 (170)
                      ++..+.+|||||++.+.......++.+|++|+|+|++++............+....  ...|+++++||+|+.+...   
T Consensus        82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~  159 (425)
T PRK12317         82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRY  159 (425)
T ss_pred             CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHH
Confidence            88899999999998886655556789999999999987322211111122222221  2357999999999975211   


Q ss_pred             ---HHHHHhHhCccccccceeEEEeeeccCC
Q 030848          143 ---ADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       143 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                         .+++.+.+...++....++++++||++|
T Consensus       160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g  190 (425)
T PRK12317        160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEG  190 (425)
T ss_pred             HHHHHHHHHHHHhhCCCcCcceEEEeecccC
Confidence               2344444443344344578999999986

>PRK04213 GTP-binding protein; Provisional

Probab=99.84  E-value=6.8e-21  Score=134.77  Aligned_cols=143  Identities=22%  Similarity=0.277  Sum_probs=83.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC-----------CCcchhh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG-----------QPGLRSI   84 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~   84 (170)
                      ..++|+++|.+|+|||||+|++.+.      .......+.+......+...  .+.+|||||           ++.+...
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~------~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~   79 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGK------KVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDE   79 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC------CCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHH
Confidence            5689999999999999999999762      11122222322222233333  699999999           3455555


Q ss_pred             HHHHhh----ccCEEEEEEeCCCcccH-H---------HHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC--CHHHHHh
Q 030848           85 WEKYYE----EAHAVVFVIDAACPSRF-E---------DSKTALEKVLRNEDLQGAPLLILANKQDLPDAV--SADELAR  148 (170)
Q Consensus        85 ~~~~~~----~~~~~i~v~d~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~--~~~~~~~  148 (170)
                      +..+++    .++++++|+|.++.... +         .....+..+ .   ..+.|+++++||+|+.+..  ..+++.+
T Consensus        80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~-~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~  155 (201)
T PRK04213         80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFL-R---ELGIPPIVAVNKMDKIKNRDEVLDEIAE  155 (201)
T ss_pred             HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHH-H---HcCCCeEEEEECccccCcHHHHHHHHHH
Confidence            555543    45788889887653211 0         011112222 2   1478999999999996543  2223333


Q ss_pred             HhCcc-ccccceeEEEeeeccCC
Q 030848          149 YLDLK-KLDERVCMFEAVSGYDG  170 (170)
Q Consensus       149 ~~~~~-~~~~~~~~~~~~Sa~~g  170 (170)
                      .+... .......+++++||++|
T Consensus       156 ~~~~~~~~~~~~~~~~~~SA~~g  178 (201)
T PRK04213        156 RLGLYPPWRQWQDIIAPISAKKG  178 (201)
T ss_pred             HhcCCccccccCCcEEEEecccC
Confidence            33210 01111236899999986

>TIGR00436 era GTP-binding protein Era

Probab=99.84  E-value=9.3e-20  Score=134.53  Aligned_cols=139  Identities=22%  Similarity=0.202  Sum_probs=85.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE-EEEEecCeEEEEEEcCCCCcc--------hhhHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSNSKLVFWDLGGQPGL--------RSIWEKYY   89 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~   89 (170)
                      +|+++|.+|+|||||+|++.+.......    ....|+.... ......+.++.+|||||....        ......++
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs----~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l   77 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITS----PKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAI   77 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecC----CCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHH
Confidence            6899999999999999999873211111    1111222111 123344567999999995432        11234557


Q ss_pred             hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +.+|++++|+|+++..+.+  ..+...+ ..   .+.|+++++||+|+.+.....+....+..   .....+++++||++
T Consensus        78 ~~aDvvl~VvD~~~~~~~~--~~i~~~l-~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~iSA~~  148 (270)
T TIGR00436        78 GGVDLILFVVDSDQWNGDG--EFVLTKL-QN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAI---LEDFKDIVPISALT  148 (270)
T ss_pred             hhCCEEEEEEECCCCCchH--HHHHHHH-Hh---cCCCEEEEEECeeCCCHHHHHHHHHHHHh---hcCCCceEEEecCC
Confidence            8999999999999876654  2222222 22   46899999999999643222222222211   11223799999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       149 g  149 (270)
T TIGR00436       149 G  149 (270)
T ss_pred             C
Confidence            6

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.84  E-value=1.1e-19  Score=140.54  Aligned_cols=142  Identities=25%  Similarity=0.367  Sum_probs=95.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec-CeEEEEEEcCCCCc-------chhhHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPG-------LRSIWEKYY   89 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~-------~~~~~~~~~   89 (170)
                      ..|+++|.++||||||++++.+..+.+.....++..|    +...+... +..+.+||+||..+       +...+...+
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~P----nlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi  234 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVP----NLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI  234 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceece----EEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH
Confidence            4899999999999999999987544443333333333    33345555 67899999999532       223334445


Q ss_pred             hccCEEEEEEeCCCc---ccHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEee
Q 030848           90 EEAHAVVFVIDAACP---SRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAV  165 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~-~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (170)
                      .+++++++|+|+++.   .+++....+..++..+.. ..+.|+++|+||+|+...  .+.+.+..+.     ...+++++
T Consensus       235 er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~~-----l~~~i~~i  307 (424)
T PRK12297        235 ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKEK-----LGPKVFPI  307 (424)
T ss_pred             hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHHH-----hCCcEEEE
Confidence            679999999999865   566776666666655422 246899999999998532  2223222221     11579999


Q ss_pred             eccCC
Q 030848          166 SGYDG  170 (170)
Q Consensus       166 Sa~~g  170 (170)
                      ||++|
T Consensus       308 SA~tg  312 (424)
T PRK12297        308 SALTG  312 (424)
T ss_pred             eCCCC
Confidence            99986

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.84  E-value=9.4e-20  Score=142.56  Aligned_cols=147  Identities=23%  Similarity=0.181  Sum_probs=95.4

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh-----------h
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS-----------I   84 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~   84 (170)
                      ..++++++|.+++|||||+|++.+........   ....|.......+...+..+.+|||||......           .
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~---~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSD---IAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecCC---CCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHH
Confidence            34899999999999999999998632111111   111122222334555677899999999643321           1


Q ss_pred             HHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc-ccCCHHHHHhHhCccccccceeEEE
Q 030848           85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP-DAVSADELARYLDLKKLDERVCMFE  163 (170)
Q Consensus        85 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~  163 (170)
                      ...+++.+|++|+|+|++++.+.+... .+..+..    .+.|+++++||+|+. +....++..+.++........++++
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi  322 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIV  322 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceE
Confidence            124578999999999999887765542 2333322    468999999999997 3333444444444222223457999


Q ss_pred             eeeccCC
Q 030848          164 AVSGYDG  170 (170)
Q Consensus       164 ~~Sa~~g  170 (170)
                      ++||++|
T Consensus       323 ~~SA~~g  329 (429)
T TIGR03594       323 FISALTG  329 (429)
T ss_pred             EEeCCCC
Confidence            9999987

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.84  E-value=2.4e-20  Score=145.62  Aligned_cols=155  Identities=16%  Similarity=0.157  Sum_probs=101.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCC--------------C-----------CCCC--cccCCcceeEEEEEec
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------G-----------LPPD--RIVPTVGLNIGRIEVS   66 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~--------------~-----------~~~~--~~~~~~~~~~~~~~~~   66 (170)
                      .++.++|+++|+.++|||||++++........              +           ....  ....|.+.....+...
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            56889999999999999999999964322111              0           0001  1123444445566777


Q ss_pred             CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCccccCC---
Q 030848           67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDAVS---  142 (170)
Q Consensus        67 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~---  142 (170)
                      +..+.+|||||++.+.......+..+|++++|+|+++..+..... .....+....  ...|+++++||+|+.+...   
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~  161 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEF  161 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHH
Confidence            889999999999988766666678999999999999875431111 1111122222  2357999999999974211   


Q ss_pred             ---HHHHHhHhCccccccceeEEEeeeccCC
Q 030848          143 ---ADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       143 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                         ..++.+.++..+.....++++++||++|
T Consensus       162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g  192 (426)
T TIGR00483       162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNG  192 (426)
T ss_pred             HHHHHHHHHHHHHcCCCcccceEEEeecccc
Confidence               2344444443444445689999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.84  E-value=1.2e-19  Score=142.16  Aligned_cols=135  Identities=24%  Similarity=0.298  Sum_probs=93.0

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhh--------HH
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI--------WE   86 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~   86 (170)
                      +..++|+++|.+|+|||||+|++.+......   .+....|.......+...+..+.+|||||.++....        ..
T Consensus       213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v---~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~  289 (449)
T PRK05291        213 REGLKVVIAGRPNVGKSSLLNALLGEERAIV---TDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSR  289 (449)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHhCCCCccc---CCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHH
Confidence            3568999999999999999999976211111   111122333334456677889999999997654322        22


Q ss_pred             HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeee
Q 030848           87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVS  166 (170)
Q Consensus        87 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  166 (170)
                      .+++.+|++++|+|++++.+++....+. .      ..+.|+++|+||+|+.+.....      .     ....+++++|
T Consensus       290 ~~~~~aD~il~VvD~s~~~s~~~~~~l~-~------~~~~piiiV~NK~DL~~~~~~~------~-----~~~~~~i~iS  351 (449)
T PRK05291        290 EAIEEADLVLLVLDASEPLTEEDDEILE-E------LKDKPVIVVLNKADLTGEIDLE------E-----ENGKPVIRIS  351 (449)
T ss_pred             HHHHhCCEEEEEecCCCCCChhHHHHHH-h------cCCCCcEEEEEhhhccccchhh------h-----ccCCceEEEE
Confidence            3578999999999999887776443322 2      2578999999999997543222      1     2345789999


Q ss_pred             ccCC
Q 030848          167 GYDG  170 (170)
Q Consensus       167 a~~g  170 (170)
                      |++|
T Consensus       352 Aktg  355 (449)
T PRK05291        352 AKTG  355 (449)
T ss_pred             eeCC
Confidence            9986

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.83  E-value=5.3e-20  Score=130.52  Aligned_cols=147  Identities=16%  Similarity=0.109  Sum_probs=88.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe--------------------------------
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV--------------------------------   65 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------   65 (170)
                      ++|+++|+.|+|||||+.++.+...+..... .....++......+.+                                
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEE-LERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGET   79 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCee-EEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcc
Confidence            4789999999999999999965311111000 0011111111111111                                


Q ss_pred             -cCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHH
Q 030848           66 -SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSAD  144 (170)
Q Consensus        66 -~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~  144 (170)
                       ....+.+|||||++.+...+...+..+|++++|+|++++.........+..+...   ...|+++++||+|+.+.....
T Consensus        80 ~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~  156 (203)
T cd01888          80 KLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQAL  156 (203)
T ss_pred             ccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHH
Confidence             1267999999999988887777788999999999998742211222222222111   235799999999997633322


Q ss_pred             ----HHHhHhCccccccceeEEEeeeccCC
Q 030848          145 ----ELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       145 ----~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                          ++.+.++.  .....++++++||++|
T Consensus       157 ~~~~~i~~~~~~--~~~~~~~i~~vSA~~g  184 (203)
T cd01888         157 ENYEQIKKFVKG--TIAENAPIIPISAQLK  184 (203)
T ss_pred             HHHHHHHHHHhc--cccCCCcEEEEeCCCC
Confidence                22222221  1123568999999986

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PTZ00099 rab6; Provisional

Probab=99.83  E-value=7.3e-20  Score=126.95  Aligned_cols=118  Identities=24%  Similarity=0.391  Sum_probs=94.0

Q ss_pred             CCCCcccCCcceeEEE--EE--ecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC
Q 030848           47 LPPDRIVPTVGLNIGR--IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED  122 (170)
Q Consensus        47 ~~~~~~~~~~~~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  122 (170)
                      .+.+.+.+|++..+..  +.  .....+.||||||++.+...+..+++.+|++|+|||++++.+++.+..|+..+.....
T Consensus         4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~   83 (176)
T PTZ00099          4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG   83 (176)
T ss_pred             CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence            3445677888766642  22  3457899999999999999999999999999999999999999999999988876543


Q ss_pred             CCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848          123 LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       123 ~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                       +..|+++|+||+|+.+  ....++..+..+     ...+.|++|||++|
T Consensus        84 -~~~piilVgNK~DL~~~~~v~~~e~~~~~~-----~~~~~~~e~SAk~g  127 (176)
T PTZ00099         84 -KDVIIALVGNKTDLGDLRKVTYEEGMQKAQ-----EYNTMFHETSAKAG  127 (176)
T ss_pred             -CCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEECCCC
Confidence             5789999999999964  455666655554     34567999999987

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.83  E-value=3.2e-19  Score=120.63  Aligned_cols=150  Identities=21%  Similarity=0.364  Sum_probs=115.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCC------CCCCCcccCCcceeEEEEEecC-eEEEEEEcCCCCcchhhHH
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE------GLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRSIWE   86 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~   86 (170)
                      .....||+++|+.++||||++..++.......      .........|+...+..+...+ ..+.+++||||+++..+|.
T Consensus         7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~   86 (187)
T COG2229           7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE   86 (187)
T ss_pred             cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH
Confidence            45678999999999999999999976432111      1111233456777777777766 8899999999999999999


Q ss_pred             HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeee
Q 030848           87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVS  166 (170)
Q Consensus        87 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  166 (170)
                      .+.+.+.++++++|.+.+..+ +....+..+ ...  ...|+++++||.|+++..+++.+.+.+....   ..++.++.+
T Consensus        87 ~l~~ga~gaivlVDss~~~~~-~a~~ii~f~-~~~--~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~~  159 (187)
T COG2229          87 ILSRGAVGAIVLVDSSRPITF-HAEEIIDFL-TSR--NPIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIEID  159 (187)
T ss_pred             HHhCCcceEEEEEecCCCcch-HHHHHHHHH-hhc--cCCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceeeee
Confidence            999999999999999999888 333333333 322  1299999999999999999999999998332   367888888


Q ss_pred             ccCC
Q 030848          167 GYDG  170 (170)
Q Consensus       167 a~~g  170 (170)
                      |..|
T Consensus       160 a~e~  163 (187)
T COG2229         160 ATEG  163 (187)
T ss_pred             cccc
Confidence            8753

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.83  E-value=3e-19  Score=127.09  Aligned_cols=146  Identities=16%  Similarity=0.118  Sum_probs=90.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCC-------------------------CCCC--cccCCcceeEEEEEecCeEEE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEG-------------------------LPPD--RIVPTVGLNIGRIEVSNSKLV   71 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~-------------------------~~~~--~~~~~~~~~~~~~~~~~~~~~   71 (170)
                      ||+++|++++|||||+++++........                         ....  ....|.......+...+.++.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            6899999999999999999653322210                         0000  011233333445666788999


Q ss_pred             EEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC--HH----H
Q 030848           72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS--AD----E  145 (170)
Q Consensus        72 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~--~~----~  145 (170)
                      +|||||++++.......++.+|++|+|+|++++...+ ....+ .+....  ...++++++||+|+.+...  .+    +
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~-~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~  156 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHS-YILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD  156 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHH-HHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence            9999999887666666779999999999998763322 22222 222221  2346888999999975321  11    2


Q ss_pred             HHhHhCccccccceeEEEeeeccCC
Q 030848          146 LARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +.+.++..+  ....+++++||++|
T Consensus       157 ~~~~~~~~~--~~~~~ii~iSA~~g  179 (208)
T cd04166         157 YLAFAAKLG--IEDITFIPISALDG  179 (208)
T ss_pred             HHHHHHHcC--CCCceEEEEeCCCC
Confidence            222222111  22467999999986

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.82  E-value=6.9e-19  Score=141.19  Aligned_cols=145  Identities=23%  Similarity=0.281  Sum_probs=97.2

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCe-EEEEEEcCCCCcchhhHHHHhhccCE
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS-KLVFWDLGGQPGLRSIWEKYYEEAHA   94 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~D~~G~~~~~~~~~~~~~~~~~   94 (170)
                      ...+|+++|++++|||||++++.+  ..........  .|.......+...+. .+.+|||||++.+..++...++.+|+
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~--~~v~~~e~~G--IT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDi  161 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRK--TKVAQGEAGG--ITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDI  161 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh--CCcccccCCc--eeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCE
Confidence            447899999999999999999976  2222221111  223333334444444 89999999999999999988999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccc----cceeEEEeeeccCC
Q 030848           95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLD----ERVCMFEAVSGYDG  170 (170)
Q Consensus        95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~g  170 (170)
                      +++|+|+++....+. .+.+...    ...+.|+++++||+|+++. ..++..+.++..+..    ....+++++||++|
T Consensus       162 aILVVda~dgv~~qT-~e~i~~~----~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktG  235 (587)
T TIGR00487       162 VVLVVAADDGVMPQT-IEAISHA----KAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTG  235 (587)
T ss_pred             EEEEEECCCCCCHhH-HHHHHHH----HHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCC
Confidence            999999987533222 2222222    1247899999999999753 334444444322221    12368999999987

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.82  E-value=2.2e-19  Score=128.70  Aligned_cols=149  Identities=19%  Similarity=0.228  Sum_probs=95.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCC-------------------------CCCCC--cccCCcceeEEEEEecCeEEE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVE-------------------------GLPPD--RIVPTVGLNIGRIEVSNSKLV   71 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~-------------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~   71 (170)
                      +|+++|+.++|||||+.++........                         +....  ...-|.......+...+..+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            589999999999999999954321111                         00111  111244444456777889999


Q ss_pred             EEEcCCCCcchhhHHHHhhccCEEEEEEeCCCccc------HHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc----C
Q 030848           72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR------FEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA----V  141 (170)
Q Consensus        72 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~----~  141 (170)
                      +|||||+..+...+...++.+|++|+|+|+++...      .......+... ...  ...|+++++||+|+...    .
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~iiivvNK~Dl~~~~~~~~  157 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL--GVKQLIVAVNKMDDVTVNWSEE  157 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc--CCCeEEEEEEccccccccccHH
Confidence            99999998777766777789999999999987421      11122222222 211  23689999999999742    1


Q ss_pred             CHHHHHh----HhCccccccceeEEEeeeccCC
Q 030848          142 SADELAR----YLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       142 ~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ..+++.+    .++........++++++||++|
T Consensus       158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg  190 (219)
T cd01883         158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTG  190 (219)
T ss_pred             HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcC
Confidence            1223333    3333333445689999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.82  E-value=6.7e-19  Score=123.91  Aligned_cols=150  Identities=18%  Similarity=0.171  Sum_probs=97.7

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCC----------CCCCC--cccCCcceeEEEEEecCeEEEEEEcCCCCcchh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVE----------GLPPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS   83 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~----------~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   83 (170)
                      +.++|+++|..++|||||++++........          +....  ...-|.......+...+..+.++||||+..+..
T Consensus         1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~   80 (195)
T cd01884           1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK   80 (195)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence            358999999999999999999975321110          00011  111233333334555678899999999988877


Q ss_pred             hHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCccccCC-H----HHHHhHhCcccccc
Q 030848           84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVS-A----DELARYLDLKKLDE  157 (170)
Q Consensus        84 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii~v~nK~D~~~~~~-~----~~~~~~~~~~~~~~  157 (170)
                      .....+..+|++++|+|++..-. ......+..+..    .+.| +++++||+|+..... .    +++.+.+...+...
T Consensus        81 ~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~  155 (195)
T cd01884          81 NMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG  155 (195)
T ss_pred             HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence            77777899999999999986532 222333333322    2444 889999999964221 1    23444444344445


Q ss_pred             ceeEEEeeeccCC
Q 030848          158 RVCMFEAVSGYDG  170 (170)
Q Consensus       158 ~~~~~~~~Sa~~g  170 (170)
                      ..++++++||++|
T Consensus       156 ~~v~iipiSa~~g  168 (195)
T cd01884         156 DNTPIVRGSALKA  168 (195)
T ss_pred             cCCeEEEeeCccc
Confidence            5789999999986

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.82  E-value=7e-19  Score=138.94  Aligned_cols=140  Identities=26%  Similarity=0.253  Sum_probs=89.7

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc--------chhhHHH
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSIWEK   87 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~   87 (170)
                      ...+|+++|.+|+|||||+|++.+.......   .....|.......+...+..+.+|||||.+.        +......
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~---~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~  113 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVE---DVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEV  113 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCccccc---CCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHH
Confidence            3468999999999999999999762111111   1111222333334556778899999999653        3334556


Q ss_pred             HhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeec
Q 030848           88 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSG  167 (170)
Q Consensus        88 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  167 (170)
                      +++.+|++|+|+|+++..+... ..+. ..+..   .+.|+++|+||+|+.....  +..+... .++   . ..+++||
T Consensus       114 ~~~~aD~il~VvD~~~~~s~~~-~~i~-~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~-~g~---~-~~~~iSA  181 (472)
T PRK03003        114 AMRTADAVLFVVDATVGATATD-EAVA-RVLRR---SGKPVILAANKVDDERGEA--DAAALWS-LGL---G-EPHPVSA  181 (472)
T ss_pred             HHHhCCEEEEEEECCCCCCHHH-HHHH-HHHHH---cCCCEEEEEECccCCccch--hhHHHHh-cCC---C-CeEEEEc
Confidence            7889999999999998766543 2222 22222   4789999999999865322  2222222 122   1 2368999


Q ss_pred             cCC
Q 030848          168 YDG  170 (170)
Q Consensus       168 ~~g  170 (170)
                      ++|
T Consensus       182 ~~g  184 (472)
T PRK03003        182 LHG  184 (472)
T ss_pred             CCC
Confidence            986

>cd01894 EngA1 EngA1 subfamily

Probab=99.82  E-value=4.6e-19  Score=120.20  Aligned_cols=135  Identities=23%  Similarity=0.216  Sum_probs=85.2

Q ss_pred             EEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh--------hHHHHhhcc
Q 030848           21 LILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS--------IWEKYYEEA   92 (170)
Q Consensus        21 ~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~   92 (170)
                      +++|.+|+|||||++++.+........   ....+...........+..+.+|||||......        .....++.+
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~   77 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVED---TPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEA   77 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecC---CCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence            479999999999999997631111111   111122233334556678899999999776433        334567889


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      |++++|+|+++..+....  .+......   .+.|+++++||+|+.+....   .+.+....    ..+++++||++|
T Consensus        78 d~ii~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK~D~~~~~~~---~~~~~~~~----~~~~~~~Sa~~~  143 (157)
T cd01894          78 DVILFVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNKVDNIKEEDE---AAEFYSLG----FGEPIPISAEHG  143 (157)
T ss_pred             CEEEEEEeccccCCccHH--HHHHHHHh---cCCCEEEEEECcccCChHHH---HHHHHhcC----CCCeEEEecccC
Confidence            999999999876444332  22222222   35899999999999764332   22222111    125789999876

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.81  E-value=1.9e-18  Score=139.23  Aligned_cols=144  Identities=16%  Similarity=0.164  Sum_probs=95.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCC-CCCccc----------CCcceeEEEEEe-----cCeEEEEEEcCCCCc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGL-PPDRIV----------PTVGLNIGRIEV-----SNSKLVFWDLGGQPG   80 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~-~~~~~~----------~~~~~~~~~~~~-----~~~~~~i~D~~G~~~   80 (170)
                      .-+++++|+.++|||||++++.......... ....+.          .|+......+.+     +...+.+|||||++.
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            4579999999999999999997643211110 111111          122221122222     236899999999999


Q ss_pred             chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCH---HHHHhHhCcccccc
Q 030848           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA---DELARYLDLKKLDE  157 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~---~~~~~~~~~~~~~~  157 (170)
                      +...+..+++.+|++|+|+|+++..+.+....|+... .    .+.|+++++||+|+.+....   +++.+.+.     .
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg-----~  152 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIG-----L  152 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhC-----C
Confidence            9988999999999999999999876666554444332 2    36789999999999754322   22222222     2


Q ss_pred             ceeEEEeeeccCC
Q 030848          158 RVCMFEAVSGYDG  170 (170)
Q Consensus       158 ~~~~~~~~Sa~~g  170 (170)
                      ...+++++||++|
T Consensus       153 ~~~~vi~vSAktG  165 (595)
T TIGR01393       153 DASEAILASAKTG  165 (595)
T ss_pred             CcceEEEeeccCC
Confidence            2235899999987

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.81  E-value=5.5e-19  Score=138.50  Aligned_cols=147  Identities=22%  Similarity=0.170  Sum_probs=95.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcc----------hh-h
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL----------RS-I   84 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~-~   84 (170)
                      ..++|+++|.+|+|||||+|++.+.........   ...|.......+...+..+.+|||||....          .. .
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~---~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDI---AGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCC---CCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            468999999999999999999976221111111   111222222234567788999999995321          11 1


Q ss_pred             HHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEe
Q 030848           85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA  164 (170)
Q Consensus        85 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (170)
                      ...+++.+|++|+|+|++++.+.+.. ..+..+..    .+.|+++++||+|+.++...++..+.+.........+++++
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~----~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~  323 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDL-RIAGLALE----AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVF  323 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEE
Confidence            12467899999999999988776543 22233322    46899999999999754444555554442222345679999


Q ss_pred             eeccCC
Q 030848          165 VSGYDG  170 (170)
Q Consensus       165 ~Sa~~g  170 (170)
                      +||++|
T Consensus       324 ~SA~~~  329 (435)
T PRK00093        324 ISALTG  329 (435)
T ss_pred             EeCCCC
Confidence            999986

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.81  E-value=8.6e-21  Score=127.56  Aligned_cols=140  Identities=21%  Similarity=0.359  Sum_probs=113.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE----EEEecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      .-+|.+++|..++||||++.++..      +-+...+..+++..+.    .+..++....+||++|++++......|++.
T Consensus        19 ~aiK~vivGng~VGKssmiqryCk------gifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrg   92 (246)
T KOG4252|consen   19 RAIKFVIVGNGSVGKSSMIQRYCK------GIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRG   92 (246)
T ss_pred             hhEEEEEECCCccchHHHHHHHhc------cccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhcc
Confidence            348999999999999999999976      5555566666666543    345567889999999999999999999999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeecc
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      +.+.++||+.++..+|+...+|...+....  ..+|.++|-||+|+.+.  ...++.+..++     .....++.+|++
T Consensus        93 aqa~vLVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak-----~l~~RlyRtSvk  164 (246)
T KOG4252|consen   93 AQASVLVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAK-----KLHKRLYRTSVK  164 (246)
T ss_pred             ccceEEEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHH-----Hhhhhhhhhhhh
Confidence            999999999999999999999999997765  58999999999999873  34555555555     233346666655

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.81  E-value=1.4e-18  Score=141.67  Aligned_cols=148  Identities=22%  Similarity=0.283  Sum_probs=96.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe--cCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      ....+|+++|+.++|||||++++...  .............++.....+..  .+..+.+|||||++.+..++..+++.+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~--~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~a  319 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKT--QIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVT  319 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhc--cCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHC
Confidence            35578999999999999999999762  11111111122222222212222  357899999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccc----ccceeEEEeeecc
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL----DERVCMFEAVSGY  168 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~  168 (170)
                      |++|+|+|+++....+. .+.+..+    ...+.|+++++||+|+++.. .+++.+.+.....    ....++++++||+
T Consensus       320 DiaILVVDA~dGv~~QT-~E~I~~~----k~~~iPiIVViNKiDl~~~~-~e~v~~eL~~~~ll~e~~g~~vpvv~VSAk  393 (742)
T CHL00189        320 DIAILIIAADDGVKPQT-IEAINYI----QAANVPIIVAINKIDKANAN-TERIKQQLAKYNLIPEKWGGDTPMIPISAS  393 (742)
T ss_pred             CEEEEEEECcCCCChhh-HHHHHHH----HhcCceEEEEEECCCccccC-HHHHHHHHHHhccchHhhCCCceEEEEECC
Confidence            99999999987533222 2222222    12468999999999997632 3333333321111    1124789999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       394 tG  395 (742)
T CHL00189        394 QG  395 (742)
T ss_pred             CC
Confidence            87

>cd04163 Era Era subfamily

Probab=99.81  E-value=1.8e-18  Score=118.03  Aligned_cols=143  Identities=21%  Similarity=0.230  Sum_probs=88.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh--------hHHHH
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS--------IWEKY   88 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~   88 (170)
                      ..+|+++|++|+|||||+|++.+.........   ...+...........+..+.+|||||......        .....
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   79 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPK---PQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSA   79 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCC---CCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHH
Confidence            57899999999999999999976211111110   11111111223344567899999999654322        23345


Q ss_pred             hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEeeec
Q 030848           89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSG  167 (170)
Q Consensus        89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  167 (170)
                      +..+|++++|+|++++.+  ....++......   .+.|+++++||+|+.. .....+..+.++..   ....+++++|+
T Consensus        80 ~~~~d~i~~v~d~~~~~~--~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~s~  151 (168)
T cd04163          80 LKDVDLVLFVVDASEPIG--EGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKEL---GPFAEIFPISA  151 (168)
T ss_pred             HHhCCEEEEEEECCCccC--chHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhc---cCCCceEEEEe
Confidence            688999999999998722  122222222221   2679999999999973 44445555555421   22457899999


Q ss_pred             cCC
Q 030848          168 YDG  170 (170)
Q Consensus       168 ~~g  170 (170)
                      ++|
T Consensus       152 ~~~  154 (168)
T cd04163         152 LKG  154 (168)
T ss_pred             ccC
Confidence            875

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.81  E-value=9.4e-19  Score=134.55  Aligned_cols=147  Identities=24%  Similarity=0.342  Sum_probs=95.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC-eEEEEEEcCCCCc-------chhhHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPG-------LRSIWEKYY   89 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~-------~~~~~~~~~   89 (170)
                      ..|++||.|+||||||+|+|.+....+.....++..+.    ...+...+ ..+.++||||..+       +...+...+
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~----~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i  235 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPN----LGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHL  235 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcE----EEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHH
Confidence            37999999999999999999875443333333333333    33355554 4699999999432       222334467


Q ss_pred             hccCEEEEEEeCC---CcccHHHHHHHHHHHHcCC-CCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEee
Q 030848           90 EEAHAVVFVIDAA---CPSRFEDSKTALEKVLRNE-DLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAV  165 (170)
Q Consensus        90 ~~~~~~i~v~d~~---~~~~~~~~~~~~~~~~~~~-~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (170)
                      .+++++++|+|++   +...++....+..++.... ...+.|+++|+||+|+.+.....+..+.+... . ....+++++
T Consensus       236 ~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~-~-~~~~~Vi~I  313 (390)
T PRK12298        236 ERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA-L-GWEGPVYLI  313 (390)
T ss_pred             HhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH-h-CCCCCEEEE
Confidence            8999999999988   4456666666766665432 12468999999999997643333333322211 0 112368999


Q ss_pred             eccCC
Q 030848          166 SGYDG  170 (170)
Q Consensus       166 Sa~~g  170 (170)
                      ||++|
T Consensus       314 SA~tg  318 (390)
T PRK12298        314 SAASG  318 (390)
T ss_pred             ECCCC
Confidence            99875

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.81  E-value=5.9e-19  Score=120.46  Aligned_cols=126  Identities=18%  Similarity=0.196  Sum_probs=81.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC----cchhhHHHHhhccCE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP----GLRSIWEKYYEEAHA   94 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~~~   94 (170)
                      +|+++|.+|+|||||+|++.+...      .  ..++...     .+...  .+|||||..    +........++.+|+
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~------~--~~~~~~v-----~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~   67 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYT------L--ARKTQAV-----EFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDM   67 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc------c--CccceEE-----EECCC--CcccCCccccCCHHHHHHHHHHHhcCCE
Confidence            799999999999999999876211      0  1122222     22221  279999962    222222334689999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +++|+|+++..++..  .+...+    . .+.|+++++||+|+++ ...+.+.+.++....   ..|++++||++|
T Consensus        68 il~v~d~~~~~s~~~--~~~~~~----~-~~~~ii~v~nK~Dl~~-~~~~~~~~~~~~~~~---~~p~~~~Sa~~g  132 (158)
T PRK15467         68 LIYVHGANDPESRLP--AGLLDI----G-VSKRQIAVISKTDMPD-ADVAATRKLLLETGF---EEPIFELNSHDP  132 (158)
T ss_pred             EEEEEeCCCcccccC--HHHHhc----c-CCCCeEEEEEccccCc-ccHHHHHHHHHHcCC---CCCEEEEECCCc
Confidence            999999998766422  222222    1 3578999999999965 344555555542222   258999999986

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.80  E-value=2.2e-18  Score=141.53  Aligned_cols=146  Identities=24%  Similarity=0.306  Sum_probs=98.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   94 (170)
                      ....+|+++|+.++|||||+++|..  ..+.......  .|.......+...+..+.+|||||++.+..++...++.+|+
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~--~~v~~~e~~G--IT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDi  363 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRK--TNVAAGEAGG--ITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDI  363 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHh--CCccccccCc--eeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCE
Confidence            3557899999999999999999975  2222111111  23333334566667889999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccc----cceeEEEeeeccCC
Q 030848           95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLD----ERVCMFEAVSGYDG  170 (170)
Q Consensus        95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~g  170 (170)
                      +|+|+|+++...-+. ...+...    ...+.|+++++||+|+++. ..+.....+......    ...++++++||++|
T Consensus       364 aILVVdAddGv~~qT-~e~i~~a----~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG  437 (787)
T PRK05306        364 VVLVVAADDGVMPQT-IEAINHA----KAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG  437 (787)
T ss_pred             EEEEEECCCCCCHhH-HHHHHHH----HhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence            999999987532222 2222222    1246899999999999753 223333222211111    12478999999987

>COG1159 Era GTPase [General function prediction only]

Probab=99.80  E-value=3.3e-19  Score=129.36  Aligned_cols=144  Identities=19%  Similarity=0.221  Sum_probs=93.5

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC--------CCcchhhHHH
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG--------QPGLRSIWEK   87 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~   87 (170)
                      +.--++++|.|++|||||+|++.+..-......++.....+..   -++..+.++.++||||        .+.+......
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~G---I~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~   81 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRG---IVTTDNAQIIFVDTPGIHKPKHALGELMNKAARS   81 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeE---EEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence            4456899999999999999999874443333333322222211   2455688999999999        2223334445


Q ss_pred             HhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC-HHHHHhHhCccccccceeEEEeee
Q 030848           88 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS-ADELARYLDLKKLDERVCMFEAVS  166 (170)
Q Consensus        88 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S  166 (170)
                      .+.++|++++|+|++.+..-  ..++....+.   ..+.|+++++||+|...... .....+.+..   ......++++|
T Consensus        82 sl~dvDlilfvvd~~~~~~~--~d~~il~~lk---~~~~pvil~iNKID~~~~~~~l~~~~~~~~~---~~~f~~ivpiS  153 (298)
T COG1159          82 ALKDVDLILFVVDADEGWGP--GDEFILEQLK---KTKTPVILVVNKIDKVKPKTVLLKLIAFLKK---LLPFKEIVPIS  153 (298)
T ss_pred             HhccCcEEEEEEeccccCCc--cHHHHHHHHh---hcCCCeEEEEEccccCCcHHHHHHHHHHHHh---hCCcceEEEee
Confidence            56899999999999875332  2222222222   14679999999999876555 3444444442   23344899999


Q ss_pred             ccCC
Q 030848          167 GYDG  170 (170)
Q Consensus       167 a~~g  170 (170)
                      |++|
T Consensus       154 A~~g  157 (298)
T COG1159         154 ALKG  157 (298)
T ss_pred             cccc
Confidence            9986

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.80  E-value=1.4e-18  Score=122.27  Aligned_cols=147  Identities=21%  Similarity=0.204  Sum_probs=85.7

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC----------cch
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP----------GLR   82 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~   82 (170)
                      +....++|+++|.+|+|||||++++.+..  ...........|.....  .. .+.++.+|||||..          .+.
T Consensus        20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~--~~~~~~~~~~~t~~~~~--~~-~~~~l~l~DtpG~~~~~~~~~~~~~~~   94 (196)
T PRK00454         20 PPDDGPEIAFAGRSNVGKSSLINALTNRK--NLARTSKTPGRTQLINF--FE-VNDKLRLVDLPGYGYAKVSKEEKEKWQ   94 (196)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCC--CcccccCCCCceeEEEE--Ee-cCCeEEEeCCCCCCCcCCCchHHHHHH
Confidence            34466899999999999999999998621  00111111111222221  22 24789999999942          223


Q ss_pred             hhHHHHhhc---cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccce
Q 030848           83 SIWEKYYEE---AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERV  159 (170)
Q Consensus        83 ~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~  159 (170)
                      .....+++.   .+++++|+|.+++.+...  ..+...+..   .+.|+++++||+|+.+....++..+.++.. .....
T Consensus        95 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~-l~~~~  168 (196)
T PRK00454         95 KLIEEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKA-LKFGD  168 (196)
T ss_pred             HHHHHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHH-HHhcC
Confidence            334445544   467888899887644332  122222221   467899999999997644333333222211 11225


Q ss_pred             eEEEeeeccCC
Q 030848          160 CMFEAVSGYDG  170 (170)
Q Consensus       160 ~~~~~~Sa~~g  170 (170)
                      .+++++||++|
T Consensus       169 ~~~~~~Sa~~~  179 (196)
T PRK00454        169 DEVILFSSLKK  179 (196)
T ss_pred             CceEEEEcCCC
Confidence            68899999876

>cd00880 Era_like Era (E

Probab=99.80  E-value=1.7e-18  Score=116.99  Aligned_cols=141  Identities=26%  Similarity=0.229  Sum_probs=91.3

Q ss_pred             EEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec-CeEEEEEEcCCCCcch-------hhHHHHhhccC
Q 030848           22 ILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPGLR-------SIWEKYYEEAH   93 (170)
Q Consensus        22 vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~-------~~~~~~~~~~~   93 (170)
                      ++|++|+|||||++++.+.......   .....+........... ...+.+||+||.....       .....+++.+|
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d   77 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVS---PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERAD   77 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccC---CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCC
Confidence            5899999999999999763221111   11111222222223333 6789999999966543       23445678999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++++|+|++++....... +.....    ..+.|+++++||+|+.......+..+...........++++++||++|
T Consensus        78 ~il~v~~~~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~  149 (163)
T cd00880          78 LILFVVDADLRADEEEEK-LLELLR----ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTG  149 (163)
T ss_pred             EEEEEEeCCCCCCHHHHH-HHHHHH----hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeecc
Confidence            999999999887765544 222222    257899999999999876555554322222223456788999999875

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.79  E-value=5.1e-18  Score=133.04  Aligned_cols=138  Identities=26%  Similarity=0.340  Sum_probs=88.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc--------chhhHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSIWEKYY   89 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~   89 (170)
                      .+|+++|.+|+|||||+|++.+.......   .....|...........+..+.+|||||.+.        +......++
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~---~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~   78 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVA---DTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAI   78 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeC---CCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence            57999999999999999999762211111   1111233333445667778999999999876        233345567


Q ss_pred             hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +.+|++|+|+|++++.+....  .+...+..   .+.|+++++||+|+.+.  .....+... .+.    ..++++||++
T Consensus        79 ~~ad~il~vvd~~~~~~~~~~--~~~~~l~~---~~~piilv~NK~D~~~~--~~~~~~~~~-lg~----~~~~~iSa~~  146 (435)
T PRK00093         79 EEADVILFVVDGRAGLTPADE--EIAKILRK---SNKPVILVVNKVDGPDE--EADAYEFYS-LGL----GEPYPISAEH  146 (435)
T ss_pred             HhCCEEEEEEECCCCCCHHHH--HHHHHHHH---cCCcEEEEEECccCccc--hhhHHHHHh-cCC----CCCEEEEeeC
Confidence            899999999999876443221  12222222   36899999999997542  122222222 111    1378999987


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       147 g  147 (435)
T PRK00093        147 G  147 (435)
T ss_pred             C
Confidence            6

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.79  E-value=2.8e-18  Score=141.25  Aligned_cols=146  Identities=22%  Similarity=0.225  Sum_probs=94.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc----------chhhH-
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG----------LRSIW-   85 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~-   85 (170)
                      .++|+++|.+|+|||||+|++.+........   ....|.......+...+..+.+|||||...          +.... 
T Consensus       450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~---~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        450 LRRVALVGRPNVGKSSLLNQLTHEERAVVND---LAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCccccccCC---CCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHH
Confidence            4799999999999999999998732111111   111122222234566778899999999431          11111 


Q ss_pred             HHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEee
Q 030848           86 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAV  165 (170)
Q Consensus        86 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (170)
                      ...++.+|++++|+|+++..+.+... ++..+..    .+.|+++|+||+|+.+....+...+.+..........+++++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~i  601 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNL  601 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEE
Confidence            23468899999999999887776654 3333332    468999999999997654444444433322112334678999


Q ss_pred             eccCC
Q 030848          166 SGYDG  170 (170)
Q Consensus       166 Sa~~g  170 (170)
                      ||++|
T Consensus       602 SAktg  606 (712)
T PRK09518        602 SAKTG  606 (712)
T ss_pred             ECCCC
Confidence            99987

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.79  E-value=1.5e-18  Score=139.60  Aligned_cols=144  Identities=21%  Similarity=0.204  Sum_probs=96.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcc--cCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEE
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI--VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   95 (170)
                      +.|+++|++++|||||++++.+...   +...++.  ..|+...+..+...+..+.+||+||++.+.......+..+|++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~---d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~a   77 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAA---DRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAA   77 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccC---cCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEE
Confidence            4789999999999999999976221   1122222  2344444555677778999999999999988888888999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCccccCCHH----HHHhHhCccccccceeEEEeeeccCC
Q 030848           96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVSAD----ELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        96 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii~v~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++|+|+++....+ ..+.+. +...   .+.| +++++||+|+.+....+    ++.+.+..... ...++++++||++|
T Consensus        78 ILVVDa~~G~~~q-T~ehl~-il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~-~~~~~ii~vSA~tG  151 (581)
T TIGR00475        78 LLVVDADEGVMTQ-TGEHLA-VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIF-LKNAKIFKTSAKTG  151 (581)
T ss_pred             EEEEECCCCCcHH-HHHHHH-HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCC-CCCCcEEEEeCCCC
Confidence            9999998743211 222222 2222   2456 99999999997644322    23333321111 12578999999986

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK00089 era GTPase Era; Reviewed

Probab=99.79  E-value=2.7e-18  Score=128.11  Aligned_cols=143  Identities=20%  Similarity=0.192  Sum_probs=87.2

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEecCeEEEEEEcCCCCcc--------hhhHH
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSNSKLVFWDLGGQPGL--------RSIWE   86 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~--------~~~~~   86 (170)
                      +.-.|+++|.+|||||||+|++.+........    ...|+..... .....+.++.+|||||....        .....
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~----~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~   79 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSP----KPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAW   79 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCC----CCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHH
Confidence            34569999999999999999997622111111    1112222221 22334578999999995432        22333


Q ss_pred             HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEee
Q 030848           87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAV  165 (170)
Q Consensus        87 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (170)
                      ..+.++|++++|+|+++..+  ....++...+.   ..+.|+++|+||+|+.. .....+..+.+..   .....+++++
T Consensus        80 ~~~~~~D~il~vvd~~~~~~--~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~---~~~~~~i~~i  151 (292)
T PRK00089         80 SSLKDVDLVLFVVDADEKIG--PGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSE---LMDFAEIVPI  151 (292)
T ss_pred             HHHhcCCEEEEEEeCCCCCC--hhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHh---hCCCCeEEEe
Confidence            45688999999999987322  22222222222   24689999999999973 3333333333331   1234679999


Q ss_pred             eccCC
Q 030848          166 SGYDG  170 (170)
Q Consensus       166 Sa~~g  170 (170)
                      ||++|
T Consensus       152 SA~~~  156 (292)
T PRK00089        152 SALKG  156 (292)
T ss_pred             cCCCC
Confidence            99876

>PRK10218 GTP-binding protein; Provisional

Probab=99.79  E-value=5.4e-18  Score=136.33  Aligned_cols=149  Identities=18%  Similarity=0.176  Sum_probs=100.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCC--------CC----cccCCcceeEEEEEecCeEEEEEEcCCCCcchhh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP--------PD----RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI   84 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   84 (170)
                      ..+|+++|+.++|||||++++...........        ..    ....++......+.+++..+.+|||||+..+...
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~   84 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE   84 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence            45899999999999999999975322211110        00    1112233333356677899999999999999998


Q ss_pred             HHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC---HHHHHhHhCcccc--ccce
Q 030848           85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLDLKKL--DERV  159 (170)
Q Consensus        85 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~---~~~~~~~~~~~~~--~~~~  159 (170)
                      +..+++.+|++|+|+|+.+.... .....+.....    .+.|.++++||+|+++...   .+++.+.+.....  ....
T Consensus        85 v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~  159 (607)
T PRK10218         85 VERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD  159 (607)
T ss_pred             HHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence            99999999999999999875432 23334444333    3678899999999976433   2344444321111  2245


Q ss_pred             eEEEeeeccCC
Q 030848          160 CMFEAVSGYDG  170 (170)
Q Consensus       160 ~~~~~~Sa~~g  170 (170)
                      +|++++||++|
T Consensus       160 ~PVi~~SA~~G  170 (607)
T PRK10218        160 FPIVYASALNG  170 (607)
T ss_pred             CCEEEeEhhcC
Confidence            78999999986

>PRK11058 GTPase HflX; Provisional

Probab=99.79  E-value=7.8e-18  Score=130.83  Aligned_cols=140  Identities=23%  Similarity=0.262  Sum_probs=88.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCe-EEEEEEcCCCCc--chhhHH------HH
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS-KLVFWDLGGQPG--LRSIWE------KY   88 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~D~~G~~~--~~~~~~------~~   88 (170)
                      .+|+++|.+|+|||||+|++.+......    +....|.+.....+...+. .+.+|||||...  ....+.      ..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~----~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~  273 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAA----DQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQE  273 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeec----cCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHH
Confidence            5899999999999999999976221111    1222334444445555553 789999999632  122222      23


Q ss_pred             hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeE-EEeeec
Q 030848           89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCM-FEAVSG  167 (170)
Q Consensus        89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa  167 (170)
                      ++.+|++|+|+|++++.+.+....+.. ++......+.|+++|+||+|+.+..... . ....      ...+ ++++||
T Consensus       274 ~~~ADlIL~VvDaS~~~~~e~l~~v~~-iL~el~~~~~pvIiV~NKiDL~~~~~~~-~-~~~~------~~~~~~v~ISA  344 (426)
T PRK11058        274 TRQATLLLHVVDAADVRVQENIEAVNT-VLEEIDAHEIPTLLVMNKIDMLDDFEPR-I-DRDE------ENKPIRVWLSA  344 (426)
T ss_pred             hhcCCEEEEEEeCCCccHHHHHHHHHH-HHHHhccCCCCEEEEEEcccCCCchhHH-H-HHHh------cCCCceEEEeC
Confidence            578999999999999877766543333 2222233578999999999996532111 1 1111      1112 578999


Q ss_pred             cCC
Q 030848          168 YDG  170 (170)
Q Consensus       168 ~~g  170 (170)
                      ++|
T Consensus       345 ktG  347 (426)
T PRK11058        345 QTG  347 (426)
T ss_pred             CCC
Confidence            986

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.78  E-value=4.7e-18  Score=136.69  Aligned_cols=147  Identities=20%  Similarity=0.219  Sum_probs=102.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCC----------C--CcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHH
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLP----------P--DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWE   86 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   86 (170)
                      +|+++|+.++|||||++++...........          .  .....|+......+.+++..+.+|||||++.+...+.
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            799999999999999999975322211110          0  0112344444556788899999999999999998889


Q ss_pred             HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC---HHHHHhHhCcccc--ccceeE
Q 030848           87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLDLKKL--DERVCM  161 (170)
Q Consensus        87 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~---~~~~~~~~~~~~~--~~~~~~  161 (170)
                      .+++.+|++++|+|+.+.. ......++.....    .+.|+++++||+|+++...   .+++.+.+.....  +...+|
T Consensus        83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p  157 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP  157 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence            9999999999999998643 3445555555544    3678999999999975322   2334444432222  123568


Q ss_pred             EEeeeccCC
Q 030848          162 FEAVSGYDG  170 (170)
Q Consensus       162 ~~~~Sa~~g  170 (170)
                      ++++||++|
T Consensus       158 vl~~SA~~g  166 (594)
T TIGR01394       158 IVYASGRAG  166 (594)
T ss_pred             EEechhhcC
Confidence            999999876

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.78  E-value=2.3e-18  Score=133.62  Aligned_cols=151  Identities=19%  Similarity=0.185  Sum_probs=92.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE--------------------EEe------cC
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--------------------IEV------SN   67 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~------~~   67 (170)
                      +++.++|+++|+.++|||||++++.+...+...... ...-|+...+..                    .+.      ..
T Consensus         1 ~~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~-~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (406)
T TIGR03680         1 RQPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEEL-KRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELL   79 (406)
T ss_pred             CCceEEEEEEccCCCCHHHHHHHHhCeecccCHhHH-HcCceeEecccccccccccccCccccccccccccccccccccc
Confidence            367899999999999999999999652111100000 000111111000                    011      24


Q ss_pred             eEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCH----
Q 030848           68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA----  143 (170)
Q Consensus        68 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~----  143 (170)
                      ..+.+||+||++.+...+......+|++++|+|++++.......+.+..+ ...  ...|+++++||+|+.+....    
T Consensus        80 ~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~~  156 (406)
T TIGR03680        80 RRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALENY  156 (406)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHHH
Confidence            67999999999999888888888999999999999653112222222222 221  23578999999999764332    


Q ss_pred             HHHHhHhCccccccceeEEEeeeccCC
Q 030848          144 DELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +++.+.+...  ....++++++||++|
T Consensus       157 ~~i~~~l~~~--~~~~~~ii~vSA~~g  181 (406)
T TIGR03680       157 EEIKEFVKGT--VAENAPIIPVSALHN  181 (406)
T ss_pred             HHHHhhhhhc--ccCCCeEEEEECCCC
Confidence            2333322211  123578999999986

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.78  E-value=3.4e-18  Score=124.67  Aligned_cols=144  Identities=27%  Similarity=0.408  Sum_probs=112.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC-eEEEEEEcCC-------CCcchhhHHH
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGG-------QPGLRSIWEK   87 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G-------~~~~~~~~~~   87 (170)
                      ....+.+||.|++|||||++++..+.+.+..+.+++..|.++.    +.+.+ .++.+-|.||       +.-+...+..
T Consensus       195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~----v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLr  270 (366)
T KOG1489|consen  195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGT----VNYDDFSQITVADIPGIIEGAHMNKGLGYKFLR  270 (366)
T ss_pred             eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccce----eeccccceeEeccCccccccccccCcccHHHHH
Confidence            4457889999999999999999999899999999999999884    33333 3399999999       2334445666


Q ss_pred             HhhccCEEEEEEeCCCc---ccHHHHHHHHHHHHcC-CCCCCCcEEEEeeCCCcccc-CCH-HHHHhHhCccccccceeE
Q 030848           88 YYEEAHAVVFVIDAACP---SRFEDSKTALEKVLRN-EDLQGAPLLILANKQDLPDA-VSA-DELARYLDLKKLDERVCM  161 (170)
Q Consensus        88 ~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~~ii~v~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~~  161 (170)
                      .+.+|+..++|+|++.+   ..++.....+.++-.+ ....+.|.++|.||+|+++. ... .++.++++     .  ..
T Consensus       271 HiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq-----~--~~  343 (366)
T KOG1489|consen  271 HIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQ-----N--PH  343 (366)
T ss_pred             HHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcC-----C--Cc
Confidence            77899999999999998   8888888888877543 33457899999999999642 222 56666665     1  26


Q ss_pred             EEeeeccCC
Q 030848          162 FEAVSGYDG  170 (170)
Q Consensus       162 ~~~~Sa~~g  170 (170)
                      ++++||++|
T Consensus       344 V~pvsA~~~  352 (366)
T KOG1489|consen  344 VVPVSAKSG  352 (366)
T ss_pred             EEEeeeccc
Confidence            899999875

>PRK12736 elongation factor Tu; Reviewed

Probab=99.78  E-value=8.4e-18  Score=130.05  Aligned_cols=152  Identities=17%  Similarity=0.149  Sum_probs=98.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCC----------CCCCC--cccCCcceeEEEEEecCeEEEEEEcCCCCcc
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE----------GLPPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL   81 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~----------~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   81 (170)
                      .++.++|+++|+.++|||||+++|.+......          +....  ...-|.......+...+..+.++||||++++
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            77899999999999999999999975321110          00111  1112333333334445678999999999988


Q ss_pred             hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCccccCCH-----HHHHhHhCcccc
Q 030848           82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVSA-----DELARYLDLKKL  155 (170)
Q Consensus        82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii~v~nK~D~~~~~~~-----~~~~~~~~~~~~  155 (170)
                      .......+..+|++++|+|++....- ...+.+..+..    .+.| +++++||+|+.+....     +++.+.+....+
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~~-~t~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~  163 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF  163 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence            77666667899999999999864322 22333333322    2456 7899999999743222     233344433334


Q ss_pred             ccceeEEEeeeccCC
Q 030848          156 DERVCMFEAVSGYDG  170 (170)
Q Consensus       156 ~~~~~~~~~~Sa~~g  170 (170)
                      ....++++++||++|
T Consensus       164 ~~~~~~ii~vSa~~g  178 (394)
T PRK12736        164 PGDDIPVIRGSALKA  178 (394)
T ss_pred             CcCCccEEEeecccc
Confidence            344689999999875

>CHL00071 tufA elongation factor Tu

Probab=99.78  E-value=8.7e-18  Score=130.54  Aligned_cols=152  Identities=18%  Similarity=0.156  Sum_probs=99.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCC----------CCCCcc--cCCcceeEEEEEecCeEEEEEEcCCCCcc
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG----------LPPDRI--VPTVGLNIGRIEVSNSKLVFWDLGGQPGL   81 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~----------~~~~~~--~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   81 (170)
                      .++.++|+++|++++|||||+++|.+.......          ....+.  .-|.......+..++.++.++||||+..+
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~   88 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence            678899999999999999999999764221110          111111  11223223344556778999999999888


Q ss_pred             hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCccccCCH-----HHHHhHhCcccc
Q 030848           82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVSA-----DELARYLDLKKL  155 (170)
Q Consensus        82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii~v~nK~D~~~~~~~-----~~~~~~~~~~~~  155 (170)
                      .......+..+|++++|+|++.... ....+.+..+..    .+.| +++++||+|+.+....     .++.+.++....
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~  163 (409)
T CHL00071         89 VKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF  163 (409)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            7766777789999999999986532 223333333322    3456 7889999999763221     244444443333


Q ss_pred             ccceeEEEeeeccCC
Q 030848          156 DERVCMFEAVSGYDG  170 (170)
Q Consensus       156 ~~~~~~~~~~Sa~~g  170 (170)
                      ....++++++||++|
T Consensus       164 ~~~~~~ii~~Sa~~g  178 (409)
T CHL00071        164 PGDDIPIVSGSALLA  178 (409)
T ss_pred             CCCcceEEEcchhhc
Confidence            344689999999876

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.78  E-value=1.8e-17  Score=133.69  Aligned_cols=145  Identities=17%  Similarity=0.150  Sum_probs=94.9

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC-CCc----------ccCCcceeEEEEE-----ecCeEEEEEEcCCCC
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP-PDR----------IVPTVGLNIGRIE-----VSNSKLVFWDLGGQP   79 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~   79 (170)
                      ...+++++|+.++|||||+.++........... ...          ...|+......+.     .++..+.+|||||++
T Consensus         6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~   85 (600)
T PRK05433          6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV   85 (600)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence            345899999999999999999976432211110 011          1122222222232     336789999999999


Q ss_pred             cchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCH---HHHHhHhCccccc
Q 030848           80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA---DELARYLDLKKLD  156 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~---~~~~~~~~~~~~~  156 (170)
                      ++...+..+++.+|++|+|+|+++....+....+.. ...    .+.|+++++||+|+.+....   +++.+.+.     
T Consensus        86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~-~~~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg-----  155 (600)
T PRK05433         86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL-ALE----NDLEIIPVLNKIDLPAADPERVKQEIEDVIG-----  155 (600)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHH----CCCCEEEEEECCCCCcccHHHHHHHHHHHhC-----
Confidence            999889999999999999999998755544333322 222    36789999999999754322   22222222     


Q ss_pred             cceeEEEeeeccCC
Q 030848          157 ERVCMFEAVSGYDG  170 (170)
Q Consensus       157 ~~~~~~~~~Sa~~g  170 (170)
                      .....++++||++|
T Consensus       156 ~~~~~vi~iSAktG  169 (600)
T PRK05433        156 IDASDAVLVSAKTG  169 (600)
T ss_pred             CCcceEEEEecCCC
Confidence            22235899999986

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.78  E-value=8.2e-18  Score=131.66  Aligned_cols=137  Identities=27%  Similarity=0.333  Sum_probs=88.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCC--------CcchhhHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ--------PGLRSIWEKYYE   90 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~~   90 (170)
                      +|+++|.+|+|||||+|++.+......   ......|...........+..+.+|||||.        +.+......+++
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v---~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~   77 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIV---SDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIE   77 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCccee---cCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHh
Confidence            589999999999999999976211111   111112333334456677888999999995        334445566788


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      .+|++++|+|+.+..+...  ..+..++..   .+.|+++|+||+|+.+....  ..+... .    ...+++++||++|
T Consensus        78 ~ad~vl~vvD~~~~~~~~d--~~i~~~l~~---~~~piilVvNK~D~~~~~~~--~~~~~~-l----g~~~~~~vSa~~g  145 (429)
T TIGR03594        78 EADVILFVVDGREGLTPED--EEIAKWLRK---SGKPVILVANKIDGKKEDAV--AAEFYS-L----GFGEPIPISAEHG  145 (429)
T ss_pred             hCCEEEEEEeCCCCCCHHH--HHHHHHHHH---hCCCEEEEEECccCCccccc--HHHHHh-c----CCCCeEEEeCCcC
Confidence            9999999999987644332  122222222   36899999999998763321  122222 1    1225889999876

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.77  E-value=8e-18  Score=134.99  Aligned_cols=115  Identities=23%  Similarity=0.291  Sum_probs=76.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE----------------ecCeEEEEEEcCCCCcc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE----------------VSNSKLVFWDLGGQPGL   81 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~~   81 (170)
                      .-|+++|++++|||||++++.+.  ...........++++......+                .+...+.+|||||++.+
T Consensus         5 piV~IiG~~d~GKTSLln~l~~~--~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLDKIRGS--AVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcc--ccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            46899999999999999999762  2222222222333333222111                11134899999999999


Q ss_pred             hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      ..++..+++.+|++++|+|+++....+. .+.+..+ ..   .+.|+++++||+|+.+
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt-~e~i~~l-~~---~~vpiIVv~NK~Dl~~  135 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQT-QEALNIL-RM---YKTPFVVAANKIDRIP  135 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhH-HHHHHHH-HH---cCCCEEEEEECCCccc
Confidence            9999999999999999999987422221 1112222 11   3679999999999964

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd04169 RF3 RF3 subfamily

Probab=99.77  E-value=2.7e-17  Score=120.96  Aligned_cols=129  Identities=24%  Similarity=0.254  Sum_probs=87.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCC-----------CCCC-------cccCCcceeEEEEEecCeEEEEEEcCCCC
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEG-----------LPPD-------RIVPTVGLNIGRIEVSNSKLVFWDLGGQP   79 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~-----------~~~~-------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   79 (170)
                      -+|+++|++|+|||||++++.........           ....       ....++......+.+++..+.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            47999999999999999999643221111           0000       01123334444677888999999999999


Q ss_pred             cchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC---HHHHHhHhC
Q 030848           80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLD  151 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~---~~~~~~~~~  151 (170)
                      ++.......++.+|++|+|+|+++.... ....++... .   ..+.|+++++||+|+.+...   .+++.+.+.
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~-~---~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~  152 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVC-R---LRGIPIITFINKLDREGRDPLELLDEIEEELG  152 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHH-H---hcCCCEEEEEECCccCCCCHHHHHHHHHHHHC
Confidence            8877667778999999999999875332 223333322 2   24689999999999877544   345555554

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.77  E-value=1.7e-17  Score=128.41  Aligned_cols=152  Identities=18%  Similarity=0.169  Sum_probs=96.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCC----------CCCCCc--ccCCcceeEEEEEecCeEEEEEEcCCCCcc
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE----------GLPPDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPGL   81 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~----------~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   81 (170)
                      .++.++|+++|+.++|||||+++|........          +....+  ..-|.......+...+..+.++||||++.+
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence            67889999999999999999999975211110          000111  112333333334445678999999999888


Q ss_pred             hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcE-EEEeeCCCccccCC-HH----HHHhHhCcccc
Q 030848           82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL-LILANKQDLPDAVS-AD----ELARYLDLKKL  155 (170)
Q Consensus        82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i-i~v~nK~D~~~~~~-~~----~~~~~~~~~~~  155 (170)
                      .......+..+|++++|+|+...... ...+.+..+..    .+.|. ++++||+|+.+... .+    ++.+.++....
T Consensus        89 ~~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~  163 (396)
T PRK12735         89 VKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF  163 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence            76666677899999999999864322 22233333222    34564 46899999975222 22    33344433333


Q ss_pred             ccceeEEEeeeccCC
Q 030848          156 DERVCMFEAVSGYDG  170 (170)
Q Consensus       156 ~~~~~~~~~~Sa~~g  170 (170)
                      ....++++++||++|
T Consensus       164 ~~~~~~ii~~Sa~~g  178 (396)
T PRK12735        164 PGDDTPIIRGSALKA  178 (396)
T ss_pred             CcCceeEEecchhcc
Confidence            334689999999875

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.77  E-value=1.5e-17  Score=128.71  Aligned_cols=152  Identities=17%  Similarity=0.152  Sum_probs=97.2

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccC----------CCCCCCc--ccCCcceeEEEEEecCeEEEEEEcCCCCcc
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNV----------EGLPPDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPGL   81 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~----------~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   81 (170)
                      .++.++|+++|+.++|||||+++|.+.....          .+....+  ...|.......+...+..+.+|||||++.+
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f   88 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence            6788999999999999999999996421110          0011111  122333333344455678999999999988


Q ss_pred             hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCccccCC-H----HHHHhHhCcccc
Q 030848           82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVS-A----DELARYLDLKKL  155 (170)
Q Consensus        82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii~v~nK~D~~~~~~-~----~~~~~~~~~~~~  155 (170)
                      ..........+|++++|+|++.....+ ..+.+..+..    .+.| +++++||+|+.+... .    +++.+.++....
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~  163 (394)
T TIGR00485        89 VKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF  163 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence            766666678899999999998743322 2233333322    2445 557899999975322 1    234444443333


Q ss_pred             ccceeEEEeeeccCC
Q 030848          156 DERVCMFEAVSGYDG  170 (170)
Q Consensus       156 ~~~~~~~~~~Sa~~g  170 (170)
                      ....++++++||++|
T Consensus       164 ~~~~~~ii~vSa~~g  178 (394)
T TIGR00485       164 PGDDTPIIRGSALKA  178 (394)
T ss_pred             CccCccEEECccccc
Confidence            334589999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.77  E-value=6.1e-18  Score=131.31  Aligned_cols=153  Identities=19%  Similarity=0.187  Sum_probs=91.8

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe------------------c-------
Q 030848           12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV------------------S-------   66 (170)
Q Consensus        12 ~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~-------   66 (170)
                      -..++.++|+++|+.++|||||+.++.+...+...... ....|+...+.....                  .       
T Consensus         4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~-~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (411)
T PRK04000          4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEEL-KRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETE   82 (411)
T ss_pred             ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHH-hcCcEEEecccccccccccccCccccccccccccccccccc
Confidence            34788999999999999999999999552111111000 011122211100000                  0       


Q ss_pred             -CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCH--
Q 030848           67 -NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA--  143 (170)
Q Consensus        67 -~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~--  143 (170)
                       ...+.+|||||++.+..........+|++++|+|++++.........+..+ ...  ...|+++++||+|+.++...  
T Consensus        83 ~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~  159 (411)
T PRK04000         83 LLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKERALE  159 (411)
T ss_pred             cccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccchhHHH
Confidence             257999999999888776666667789999999999653111222222222 111  23478999999999764332  


Q ss_pred             --HHHHhHhCccccccceeEEEeeeccCC
Q 030848          144 --DELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       144 --~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                        +++.+.++..  ....++++++||++|
T Consensus       160 ~~~~i~~~l~~~--~~~~~~ii~vSA~~g  186 (411)
T PRK04000        160 NYEQIKEFVKGT--VAENAPIIPVSALHK  186 (411)
T ss_pred             HHHHHHHHhccc--cCCCCeEEEEECCCC
Confidence              2233333211  123578999999986

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.77  E-value=1.3e-17  Score=130.57  Aligned_cols=153  Identities=16%  Similarity=0.206  Sum_probs=103.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCC-------------------------CCCCc--ccCCcceeEEEEEec
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG-------------------------LPPDR--IVPTVGLNIGRIEVS   66 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~-------------------------~~~~~--~~~~~~~~~~~~~~~   66 (170)
                      .++.++++++|+.++|||||+.+|+........                         ....+  ..-|+......+...
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~   83 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT   83 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence            578899999999999999999998543221110                         00111  112444444456667


Q ss_pred             CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccH------HHHHHHHHHHHcCCCCCCC-cEEEEeeCCCccc
Q 030848           67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF------EDSKTALEKVLRNEDLQGA-PLLILANKQDLPD  139 (170)
Q Consensus        67 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~-~ii~v~nK~D~~~  139 (170)
                      +..+.++|+||+++|.......+..+|++|+|+|+++....      ..+++.+... ..   .+. ++++++||+|+.+
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~-~~---~gi~~iIV~vNKmD~~~  159 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLA-FT---LGVKQMICCCNKMDATT  159 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHH-HH---cCCCcEEEEEEcccCCc
Confidence            78999999999999998888888999999999999873210      2233332222 21   244 5899999999863


Q ss_pred             c--------CCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848          140 A--------VSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       140 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      .        ...+++.+.++..++....++|+++||++|
T Consensus       160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G  198 (447)
T PLN00043        160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEG  198 (447)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccc
Confidence            1        124455555555555556789999999987

>PLN03126 Elongation factor Tu; Provisional

Probab=99.77  E-value=1.7e-17  Score=130.50  Aligned_cols=152  Identities=18%  Similarity=0.184  Sum_probs=101.6

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC----------CCccc--CCcceeEEEEEecCeEEEEEEcCCCCcc
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP----------PDRIV--PTVGLNIGRIEVSNSKLVFWDLGGQPGL   81 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~----------~~~~~--~~~~~~~~~~~~~~~~~~i~D~~G~~~~   81 (170)
                      .++.++|+++|+.++|||||+++|...........          ..+..  -|+......++.++..+.++|+||++.+
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f  157 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY  157 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence            56789999999999999999999975322211111          11111  2333333445667889999999999998


Q ss_pred             hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCccccCC-HH----HHHhHhCcccc
Q 030848           82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVS-AD----ELARYLDLKKL  155 (170)
Q Consensus        82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii~v~nK~D~~~~~~-~~----~~~~~~~~~~~  155 (170)
                      .......+..+|++++|+|+.+...- ...+.+.....    .+.| +++++||+|+.+... .+    ++.+.+...++
T Consensus       158 ~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~  232 (478)
T PLN03126        158 VKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF  232 (478)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence            87777777899999999999865432 23333333322    2455 789999999976322 12    34444443444


Q ss_pred             ccceeEEEeeeccCC
Q 030848          156 DERVCMFEAVSGYDG  170 (170)
Q Consensus       156 ~~~~~~~~~~Sa~~g  170 (170)
                      ....++++++||.+|
T Consensus       233 ~~~~~~~vp~Sa~~g  247 (478)
T PLN03126        233 PGDDIPIISGSALLA  247 (478)
T ss_pred             CcCcceEEEEEcccc
Confidence            445789999999875

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.77  E-value=6.1e-17  Score=119.20  Aligned_cols=142  Identities=18%  Similarity=0.141  Sum_probs=94.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCC------------CCCC--cccCCcceeEEEEEecCeEEEEEEcCCCCcchhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEG------------LPPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI   84 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   84 (170)
                      +|+++|++++|||||++++.........            ....  ...-++......+.+++.++.+|||||...+...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            5899999999999999999642221110            0011  1122444445567778899999999999888888


Q ss_pred             HHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC---CHHHHHhHhCccccccceeE
Q 030848           85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV---SADELARYLDLKKLDERVCM  161 (170)
Q Consensus        85 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~  161 (170)
                      +...++.+|++|+|+|+.+...-+ ....+.....    .+.|+++++||+|+.+..   ..+++.+.++    ......
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~----~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~----~~~~~~  151 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR----YNVPRIAFVNKMDRTGADFFRVVEQIREKLG----ANPVPL  151 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHhC----CCceEE
Confidence            888999999999999998754322 2333333322    467999999999997632   2344444444    123344


Q ss_pred             EEeeeccC
Q 030848          162 FEAVSGYD  169 (170)
Q Consensus       162 ~~~~Sa~~  169 (170)
                      .+|+|+..
T Consensus       152 ~~Pisa~~  159 (270)
T cd01886         152 QLPIGEED  159 (270)
T ss_pred             EeccccCC
Confidence            67777753

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.76  E-value=8.9e-18  Score=128.16  Aligned_cols=146  Identities=21%  Similarity=0.180  Sum_probs=102.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCC----------Ccchh-hH
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ----------PGLRS-IW   85 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~-~~   85 (170)
                      .+||+++|-|++|||||+|+|.+......+.....   |.+.-...+...+.++.++||+|-          |.+.. -.
T Consensus       178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGT---TRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGT---TRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCc---cccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhh
Confidence            59999999999999999999987433333222222   222223356778999999999992          22211 12


Q ss_pred             HHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEE
Q 030848           86 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFE  163 (170)
Q Consensus        86 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~  163 (170)
                      ...+..+|++++|+|++.+-+.++.     .+.......+.++++++||+|+.+.  ...++..+.+..........+++
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~-----~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~  329 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDL-----RIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIV  329 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHH-----HHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEE
Confidence            3345889999999999987654443     2222222257889999999999875  66677777776555567788999


Q ss_pred             eeeccCC
Q 030848          164 AVSGYDG  170 (170)
Q Consensus       164 ~~Sa~~g  170 (170)
                      .+||++|
T Consensus       330 ~iSA~~~  336 (444)
T COG1160         330 FISALTG  336 (444)
T ss_pred             EEEecCC
Confidence            9999986

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.76  E-value=5.8e-17  Score=117.33  Aligned_cols=117  Identities=21%  Similarity=0.197  Sum_probs=84.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCC-------CCCC-------cccCCcceeEEEEEecCeEEEEEEcCCCCcchhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEG-------LPPD-------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI   84 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   84 (170)
                      +|+++|+.|+|||||++++.........       ....       ....++......+..++.++.+|||||+..+...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            5899999999999999999653221111       0100       1112333444567778899999999999999888


Q ss_pred             HHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030848           85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA  140 (170)
Q Consensus        85 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~  140 (170)
                      +..+++.+|++++|+|+++.... ....++.....    .+.|+++++||+|+.+.
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a  131 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGA  131 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCC
Confidence            88899999999999999876443 33444444332    36899999999999864

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.76  E-value=2.3e-17  Score=135.92  Aligned_cols=140  Identities=20%  Similarity=0.256  Sum_probs=92.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh---------h-H
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS---------I-W   85 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~-~   85 (170)
                      +.++|+++|.+|+|||||+|++.+....    ..+....|.+.....+...+..+.+|||||...+..         . .
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~----vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~   77 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQR----VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIA   77 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCc----cCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHH
Confidence            4578999999999999999999763221    112222344444445667788999999999655421         1 1


Q ss_pred             HHHh--hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEE
Q 030848           86 EKYY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFE  163 (170)
Q Consensus        86 ~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (170)
                      ..++  .++|++++|+|+++.+.   ...+..++.+    .+.|+++++||+|+.+........+.++    +...+|++
T Consensus        78 ~~~l~~~~aD~vI~VvDat~ler---~l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~----~~LG~pVv  146 (772)
T PRK09554         78 CHYILSGDADLLINVVDASNLER---NLYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALS----ARLGCPVI  146 (772)
T ss_pred             HHHHhccCCCEEEEEecCCcchh---hHHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHH----HHhCCCEE
Confidence            2232  47899999999987533   3334444433    3689999999999975433332223332    12346899


Q ss_pred             eeeccCC
Q 030848          164 AVSGYDG  170 (170)
Q Consensus       164 ~~Sa~~g  170 (170)
                      ++||++|
T Consensus       147 piSA~~g  153 (772)
T PRK09554        147 PLVSTRG  153 (772)
T ss_pred             EEEeecC
Confidence            9999876

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.75  E-value=2.7e-17  Score=132.29  Aligned_cols=113  Identities=26%  Similarity=0.370  Sum_probs=76.6

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe----------------cCeEEEEEEcCCCC
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----------------SNSKLVFWDLGGQP   79 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~G~~   79 (170)
                      ....|+++|++++|||||++++.+  ............++++........                ....+.+|||||++
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~--~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e   82 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRG--TAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE   82 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC--cccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence            445799999999999999999976  222222222222333322221110                11137899999999


Q ss_pred             cchhhHHHHhhccCEEEEEEeCCC---cccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848           80 GLRSIWEKYYEEAHAVVFVIDAAC---PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP  138 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~  138 (170)
                      .+..++...++.+|++++|+|+++   +.+++.+    ..+ ..   .+.|+++++||+|+.
T Consensus        83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i----~~~-~~---~~vpiIvviNK~D~~  136 (586)
T PRK04004         83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAI----NIL-KR---RKTPFVVAANKIDRI  136 (586)
T ss_pred             HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH----HHH-HH---cCCCEEEEEECcCCc
Confidence            999888888899999999999987   3333332    222 11   468999999999985

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.75  E-value=7.7e-18  Score=115.99  Aligned_cols=127  Identities=30%  Similarity=0.470  Sum_probs=80.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe---cCeEEEEEEcCCCCcchhhHHH---Hhh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---SNSKLVFWDLGGQPGLRSIWEK---YYE   90 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~D~~G~~~~~~~~~~---~~~   90 (170)
                      .-.|+++|+.|||||+|+..+..      +...+.+... .-+. ....   .+..+.++|+||++.++.....   +..
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~------~~~~~T~tS~-e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~   74 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVN------GKTVPTVTSM-ENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLS   74 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHH------SS---B---S-SEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHG
T ss_pred             CceEEEEcCCCCCHHHHHHHHhc------CCcCCeeccc-cCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchh
Confidence            35689999999999999999987      3333333222 1111 2222   4567999999999998764444   478


Q ss_pred             ccCEEEEEEeCCC-cccHHHHHHHHHHHHcCC--CCCCCcEEEEeeCCCccccCCHHHHHhHhC
Q 030848           91 EAHAVVFVIDAAC-PSRFEDSKTALEKVLRNE--DLQGAPLLILANKQDLPDAVSADELARYLD  151 (170)
Q Consensus        91 ~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~--~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~  151 (170)
                      .+.++|||+|.+. +....++.+.+..++...  ....+|++++.||.|+..+.+...+.+.++
T Consensus        75 ~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE  138 (181)
T PF09439_consen   75 NAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLE  138 (181)
T ss_dssp             GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHH
T ss_pred             hCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHH
Confidence            8999999999974 445666777776665432  235799999999999988766666555554

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.75  E-value=4.8e-17  Score=124.50  Aligned_cols=135  Identities=24%  Similarity=0.321  Sum_probs=93.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhh----cccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhH-----
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSV----YSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIW-----   85 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----   85 (170)
                      +..++++++|.|++|||||+|.+.+.    ++++++++.+       .-...+++.+.++.++||+|-++-....     
T Consensus       215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRD-------viee~i~i~G~pv~l~DTAGiRet~d~VE~iGI  287 (454)
T COG0486         215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRD-------VIEEDINLNGIPVRLVDTAGIRETDDVVERIGI  287 (454)
T ss_pred             hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccc-------eEEEEEEECCEEEEEEecCCcccCccHHHHHHH
Confidence            46689999999999999999999763    3334433332       2244688999999999999954432222     


Q ss_pred             ---HHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEE
Q 030848           86 ---EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMF  162 (170)
Q Consensus        86 ---~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (170)
                         ...++++|.+|+|+|++.+.+-.+.....      ....+.|+++|.||.|+..+......  .+      ....++
T Consensus       288 eRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~------~~~~~~~~i~v~NK~DL~~~~~~~~~--~~------~~~~~~  353 (454)
T COG0486         288 ERAKKAIEEADLVLFVLDASQPLDKEDLALIE------LLPKKKPIIVVLNKADLVSKIELESE--KL------ANGDAI  353 (454)
T ss_pred             HHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH------hcccCCCEEEEEechhcccccccchh--hc------cCCCce
Confidence               23458899999999999863333322111      22357899999999999876553333  11      223378


Q ss_pred             EeeeccCC
Q 030848          163 EAVSGYDG  170 (170)
Q Consensus       163 ~~~Sa~~g  170 (170)
                      +.+|+++|
T Consensus       354 i~iSa~t~  361 (454)
T COG0486         354 ISISAKTG  361 (454)
T ss_pred             EEEEecCc
Confidence            99999976

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.74  E-value=4.6e-17  Score=119.47  Aligned_cols=129  Identities=22%  Similarity=0.346  Sum_probs=98.5

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC--CCcc-------hhhHH
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG--QPGL-------RSIWE   86 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--~~~~-------~~~~~   86 (170)
                      ....|+|.|.|++|||||++++.++.+++..+.+    .|-++.+.++......++++||||  +..+       .+...
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPF----TTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~  242 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPF----TTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAIL  242 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCc----cccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHH
Confidence            4457999999999999999999987777774443    466777778888889999999999  1111       11122


Q ss_pred             HHhhccCEEEEEEeCCCcc--cHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC
Q 030848           87 KYYEEAHAVVFVIDAACPS--RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD  151 (170)
Q Consensus        87 ~~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~  151 (170)
                      ..-+-.+++++++|++..+  +.+.....+.++....   +.|+++|+||+|..+.+..+++...+.
T Consensus       243 AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D~~~~e~~~~~~~~~~  306 (346)
T COG1084         243 ALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKIDIADEEKLEEIEASVL  306 (346)
T ss_pred             HHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEecccccchhHHHHHHHHHH
Confidence            2224578999999998654  5678888888887764   389999999999998777777777665

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.74  E-value=4.4e-17  Score=128.42  Aligned_cols=153  Identities=16%  Similarity=0.100  Sum_probs=97.2

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCC--------------CCCC-------------C--cccCCcceeEEEE
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GLPP-------------D--RIVPTVGLNIGRI   63 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~--------------~~~~-------------~--~~~~~~~~~~~~~   63 (170)
                      ..++.++|+++|+.++|||||+++|+.....+.              +...             +  ...-|+......+
T Consensus        23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~  102 (474)
T PRK05124         23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF  102 (474)
T ss_pred             cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence            357889999999999999999999965332211              1110             0  1112444444556


Q ss_pred             EecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC--
Q 030848           64 EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV--  141 (170)
Q Consensus        64 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~--  141 (170)
                      ...+..+.+|||||++.+.......+..+|++++|+|++....-+. ...+ .+....  ...|+++++||+|+.+..  
T Consensus       103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt-~~~~-~l~~~l--g~~~iIvvvNKiD~~~~~~~  178 (474)
T PRK05124        103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT-RRHS-FIATLL--GIKHLVVAVNKMDLVDYSEE  178 (474)
T ss_pred             ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc-hHHH-HHHHHh--CCCceEEEEEeeccccchhH
Confidence            6677899999999998887655656799999999999976532211 1111 112221  124789999999997422  


Q ss_pred             CHHHHHhHhC----ccccccceeEEEeeeccCC
Q 030848          142 SADELARYLD----LKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       142 ~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ..+++.+.+.    .... ....+++++||++|
T Consensus       179 ~~~~i~~~l~~~~~~~~~-~~~~~iipvSA~~g  210 (474)
T PRK05124        179 VFERIREDYLTFAEQLPG-NLDIRFVPLSALEG  210 (474)
T ss_pred             HHHHHHHHHHHHHHhcCC-CCCceEEEEEeecC
Confidence            2233333332    1111 23578999999986

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.74  E-value=3.9e-17  Score=127.88  Aligned_cols=153  Identities=16%  Similarity=0.206  Sum_probs=101.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCC-------------------------CCCC--cccCCcceeEEEEEec
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG-------------------------LPPD--RIVPTVGLNIGRIEVS   66 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~-------------------------~~~~--~~~~~~~~~~~~~~~~   66 (170)
                      .++.++|+++|+.++|||||+.+++........                         ...+  ....|+......+...
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~   83 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence            578899999999999999999999653221110                         0011  1112444444456667


Q ss_pred             CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCccc------HHHHHHHHHHHHcCCCCCC-CcEEEEeeCCCccc
Q 030848           67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR------FEDSKTALEKVLRNEDLQG-APLLILANKQDLPD  139 (170)
Q Consensus        67 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~-~~ii~v~nK~D~~~  139 (170)
                      +..+.++|+||++++.......+..+|++++|+|++....      -....+.+.....    .+ .++++++||+|...
T Consensus        84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv~vNKmD~~~  159 (446)
T PTZ00141         84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIVCINKMDDKT  159 (446)
T ss_pred             CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEEEEEcccccc
Confidence            7899999999999998877888899999999999986531      0122333332222    24 34789999999532


Q ss_pred             ----cCC----HHHHHhHhCccccccceeEEEeeeccCC
Q 030848          140 ----AVS----ADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       140 ----~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                          +..    .+++.+.++..+.....++++++||.+|
T Consensus       160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g  198 (446)
T PTZ00141        160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQG  198 (446)
T ss_pred             chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccC
Confidence                122    3344444444444445799999999886

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.74  E-value=1.8e-16  Score=113.55  Aligned_cols=115  Identities=18%  Similarity=0.140  Sum_probs=78.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCC----------CC--cccCCcceeEEEEEec----------CeEEEEEEcC
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLP----------PD--RIVPTVGLNIGRIEVS----------NSKLVFWDLG   76 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~----------~~--~~~~~~~~~~~~~~~~----------~~~~~i~D~~   76 (170)
                      +|+++|+.++|||||+.+|...........          ..  ...-|+......+.+.          +..+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            689999999999999999965322111100          00  0111222221122222          6789999999


Q ss_pred             CCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848           77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP  138 (170)
Q Consensus        77 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~  138 (170)
                      |++.+......+++.+|++++|+|+....+.+. ...+.....    .+.|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence            999999988999999999999999998765543 333333322    357899999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK00049 elongation factor Tu; Reviewed

Probab=99.74  E-value=8.1e-17  Score=124.62  Aligned_cols=152  Identities=18%  Similarity=0.165  Sum_probs=97.6

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCC----------CCCCCccc--CCcceeEEEEEecCeEEEEEEcCCCCcc
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE----------GLPPDRIV--PTVGLNIGRIEVSNSKLVFWDLGGQPGL   81 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~----------~~~~~~~~--~~~~~~~~~~~~~~~~~~i~D~~G~~~~   81 (170)
                      .++.++|+++|+.++|||||+++|........          +....+..  -|.......+...+..+.++||||+..+
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f   88 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence            57889999999999999999999976321110          00111111  2333333334445678999999999888


Q ss_pred             hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEE-EEeeCCCccccCC-H----HHHHhHhCcccc
Q 030848           82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL-ILANKQDLPDAVS-A----DELARYLDLKKL  155 (170)
Q Consensus        82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii-~v~nK~D~~~~~~-~----~~~~~~~~~~~~  155 (170)
                      .......+..+|++++|+|++.... ......+..+..    .+.|.+ +++||+|+.+... .    .++.+.+.....
T Consensus        89 ~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~  163 (396)
T PRK00049         89 VKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF  163 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence            7766677789999999999986533 223333333322    356765 6899999975222 1    233344443333


Q ss_pred             ccceeEEEeeeccCC
Q 030848          156 DERVCMFEAVSGYDG  170 (170)
Q Consensus       156 ~~~~~~~~~~Sa~~g  170 (170)
                      ....++++++||++|
T Consensus       164 ~~~~~~iv~iSa~~g  178 (396)
T PRK00049        164 PGDDTPIIRGSALKA  178 (396)
T ss_pred             CccCCcEEEeecccc
Confidence            345689999999875

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=6.9e-18  Score=114.47  Aligned_cols=142  Identities=15%  Similarity=0.332  Sum_probs=117.6

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe---cC-eEEEEEEcCCCCcchhhHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---SN-SKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      ...+++++|..|.||++++++.+.      +.....+.+|+++.+.....   .+ .++..|||.|+|.+......++-.
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~lt------geFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~   82 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLT------GEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQ   82 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhc------ccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEe
Confidence            578999999999999999999987      77777888999888764332   33 789999999999999988888888


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ..++|++||+...-++.+...|...+...+  .+.||++++||.|...+..........     +..++.+++.||+.+
T Consensus        83 ~qcAiimFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~~k~k~v~~~-----rkknl~y~~iSaksn  154 (216)
T KOG0096|consen   83 GQCAIIMFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARKVKAKPVSFH-----RKKNLQYYEISAKSN  154 (216)
T ss_pred             cceeEEEeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccccccccceee-----ecccceeEEeecccc
Confidence            899999999999999999999999998776  469999999999987755333333333     367788999999864

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.74  E-value=8.1e-17  Score=116.40  Aligned_cols=83  Identities=28%  Similarity=0.325  Sum_probs=59.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcc-------hhhHHHHhhc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL-------RSIWEKYYEE   91 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~   91 (170)
                      +++++|.+|+|||||++++.+........    ...|.......+.+.+..+++||+||..+.       .......++.
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~----~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~   77 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAY----EFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVART   77 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCC----CCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhcc
Confidence            78999999999999999998743222211    122333334456678889999999996432       2234457799


Q ss_pred             cCEEEEEEeCCCcc
Q 030848           92 AHAVVFVIDAACPS  105 (170)
Q Consensus        92 ~~~~i~v~d~~~~~  105 (170)
                      +|++++|+|++++.
T Consensus        78 ad~il~V~D~t~~~   91 (233)
T cd01896          78 ADLILMVLDATKPE   91 (233)
T ss_pred             CCEEEEEecCCcch
Confidence            99999999998754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.74  E-value=2.2e-17  Score=118.29  Aligned_cols=145  Identities=21%  Similarity=0.319  Sum_probs=86.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE-ecCeEEEEEEcCCCCcchh-----hHHHHhhcc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE-VSNSKLVFWDLGGQPGLRS-----IWEKYYEEA   92 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~   92 (170)
                      ||+++|++||||||+.+.+...+.+.   ......+|.......+. .....+.+||+||+..+..     .....++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~---dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v   77 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPR---DTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNV   77 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GG---GGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCch---hccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhcc
Confidence            79999999999999999998632211   12244577777766665 3456999999999876543     457778999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcC--CCCCCCcEEEEeeCCCccccCCHHHHHhHhCcc------ccccceeEEEe
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRN--EDLQGAPLLILANKQDLPDAVSADELARYLDLK------KLDERVCMFEA  164 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  164 (170)
                      +++|||+|+.+.+-.+++ ..+...+..  ...++..+.++++|+|+..+...++..+..+..      ......+.++.
T Consensus        78 ~~LIyV~D~qs~~~~~~l-~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~  156 (232)
T PF04670_consen   78 GVLIYVFDAQSDDYDEDL-AYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFL  156 (232)
T ss_dssp             SEEEEEEETT-STCHHHH-HHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEE
T ss_pred             CEEEEEEEcccccHHHHH-HHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEe
Confidence            999999999955533333 333332221  113789999999999997654444433333211      11112477887


Q ss_pred             eec
Q 030848          165 VSG  167 (170)
Q Consensus       165 ~Sa  167 (170)
                      +|-
T Consensus       157 TSI  159 (232)
T PF04670_consen  157 TSI  159 (232)
T ss_dssp             E-T
T ss_pred             ccC
Confidence            774

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.74  E-value=8.1e-17  Score=124.99  Aligned_cols=149  Identities=17%  Similarity=0.133  Sum_probs=93.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCC--------------CC-------------CC--cccCCcceeEEEEEecCe
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEG--------------LP-------------PD--RIVPTVGLNIGRIEVSNS   68 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~--------------~~-------------~~--~~~~~~~~~~~~~~~~~~   68 (170)
                      +||+++|+.++|||||+++++........              ..             .+  ...-|+......+..++.
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            58999999999999999999643222111              10             00  111234444555666778


Q ss_pred             EEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC--HHHH
Q 030848           69 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS--ADEL  146 (170)
Q Consensus        69 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~--~~~~  146 (170)
                      ++.++||||++.+.......+..+|++|+|+|++....-+ ..+.+. +....  ...++++++||+|+.+...  .+++
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~q-t~~~~~-~~~~~--~~~~iivviNK~D~~~~~~~~~~~i  156 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ-TRRHSY-IASLL--GIRHVVLAVNKMDLVDYDEEVFENI  156 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccc-cHHHHH-HHHHc--CCCcEEEEEEecccccchHHHHHHH
Confidence            9999999999988766666779999999999998653322 111111 22221  2346899999999975221  1222


Q ss_pred             HhHhCc--cccccceeEEEeeeccCC
Q 030848          147 ARYLDL--KKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       147 ~~~~~~--~~~~~~~~~~~~~Sa~~g  170 (170)
                      .+.+..  .......++++++||++|
T Consensus       157 ~~~~~~~~~~~~~~~~~iipiSA~~g  182 (406)
T TIGR02034       157 KKDYLAFAEQLGFRDVTFIPLSALKG  182 (406)
T ss_pred             HHHHHHHHHHcCCCCccEEEeecccC
Confidence            222210  111123578999999986

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.73  E-value=1.4e-16  Score=131.33  Aligned_cols=140  Identities=23%  Similarity=0.211  Sum_probs=86.4

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc--------chhhHHH
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSIWEK   87 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~   87 (170)
                      ...+|+++|.+++|||||+|++.+.........   ...|...........+..+.+|||||.+.        +......
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~---pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~  350 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDT---PGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQI  350 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecCC---CCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence            446899999999999999999976221111111   11112222223445678899999999653        2344456


Q ss_pred             HhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeec
Q 030848           88 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSG  167 (170)
Q Consensus        88 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  167 (170)
                      +++.+|++|+|+|+++.-..  ....+...+..   .+.|+++|+||+|+....  ....+... .+..    ..+++||
T Consensus       351 ~~~~aD~iL~VvDa~~~~~~--~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~--~~~~~~~~-lg~~----~~~~iSA  418 (712)
T PRK09518        351 AVSLADAVVFVVDGQVGLTS--TDERIVRMLRR---AGKPVVLAVNKIDDQASE--YDAAEFWK-LGLG----EPYPISA  418 (712)
T ss_pred             HHHhCCEEEEEEECCCCCCH--HHHHHHHHHHh---cCCCEEEEEECcccccch--hhHHHHHH-cCCC----CeEEEEC
Confidence            67899999999999864322  22222222222   578999999999986532  22222222 1221    2368999


Q ss_pred             cCC
Q 030848          168 YDG  170 (170)
Q Consensus       168 ~~g  170 (170)
                      ++|
T Consensus       419 ~~g  421 (712)
T PRK09518        419 MHG  421 (712)
T ss_pred             CCC
Confidence            986

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.73  E-value=4.1e-17  Score=131.56  Aligned_cols=132  Identities=21%  Similarity=0.232  Sum_probs=83.7

Q ss_pred             cCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhh------HHHHh--hccCEE
Q 030848           24 GIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI------WEKYY--EEAHAV   95 (170)
Q Consensus        24 G~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~~~~   95 (170)
                      |.+|+|||||+|++.+....    ..+....|.+.....+..++..+.+|||||+..+...      ...++  +.+|++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~----v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvv   76 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQT----VGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLV   76 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCe----ecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEE
Confidence            89999999999999763211    1111122333333456667788999999998765432      23333  378999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        96 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++|+|+++.+   ....+..++..    .+.|+++++||+|+.++.......+.+.    +..+++++++||++|
T Consensus        77 I~VvDat~le---r~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~----~~lg~pvv~tSA~tg  140 (591)
T TIGR00437        77 VNVVDASNLE---RNLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLE----ERLGVPVVPTSATEG  140 (591)
T ss_pred             EEEecCCcch---hhHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHH----HHcCCCEEEEECCCC
Confidence            9999998743   22333333333    4689999999999965332222222222    123468999999986

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.73  E-value=1.3e-16  Score=129.01  Aligned_cols=145  Identities=18%  Similarity=0.159  Sum_probs=92.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCc--ccCCcceeEEEEEe-cCeEEEEEEcCCCCcchhhHHHHhhccCEE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDR--IVPTVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   95 (170)
                      -|+++|+.++|||||++++.+...   +...++  ...|+...+..+.. .+..+.+|||||++.+.......+..+|++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~---dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~   78 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNA---DRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHA   78 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC---ccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEE
Confidence            578999999999999999976321   112222  23455444444433 346789999999998877777778999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcc--ccccceeEEEeeeccCC
Q 030848           96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLK--KLDERVCMFEAVSGYDG  170 (170)
Q Consensus        96 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~g  170 (170)
                      ++|+|+++... ....+.+. +....  ...++++++||+|+.++...++..+.++..  .......+++++||++|
T Consensus        79 lLVVda~eg~~-~qT~ehl~-il~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG  151 (614)
T PRK10512         79 LLVVACDDGVM-AQTREHLA-ILQLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEG  151 (614)
T ss_pred             EEEEECCCCCc-HHHHHHHH-HHHHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCC
Confidence            99999987432 22222222 22221  123468999999997644333333333211  11123468999999987

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.72  E-value=1e-16  Score=130.64  Aligned_cols=158  Identities=18%  Similarity=0.124  Sum_probs=98.4

Q ss_pred             HhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCC--------------CCCCC---------------cccCCccee
Q 030848            9 WKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GLPPD---------------RIVPTVGLN   59 (170)
Q Consensus         9 ~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~--------------~~~~~---------------~~~~~~~~~   59 (170)
                      .....+++.++|+++|++++|||||+++|+.....+.              +.+..               ...-|+...
T Consensus        16 ~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~   95 (632)
T PRK05506         16 LAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVA   95 (632)
T ss_pred             HhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceee
Confidence            3344567889999999999999999999965332211              11100               011234444


Q ss_pred             EEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           60 IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        60 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      ...+...+.++.++||||++.+.......+..+|++++|+|++....-+ ....+. +....  ...++++++||+|+.+
T Consensus        96 ~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~-~~~~~--~~~~iivvvNK~D~~~  171 (632)
T PRK05506         96 YRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSF-IASLL--GIRHVVLAVNKMDLVD  171 (632)
T ss_pred             eeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHH-HHHHh--CCCeEEEEEEeccccc
Confidence            4456677889999999999887665556678999999999997653221 111111 11211  2357899999999974


Q ss_pred             --cCCHHHHHhHhCc--cccccceeEEEeeeccCC
Q 030848          140 --AVSADELARYLDL--KKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       140 --~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~g  170 (170)
                        ....++..+.+..  .......++++++||++|
T Consensus       172 ~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g  206 (632)
T PRK05506        172 YDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKG  206 (632)
T ss_pred             chhHHHHHHHHHHHHHHHHcCCCCccEEEEecccC
Confidence              2222223222210  111124568999999986

>cd04167 Snu114p Snu114p subfamily

Probab=99.72  E-value=2.2e-16  Score=112.78  Aligned_cols=115  Identities=18%  Similarity=0.175  Sum_probs=77.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCC-----C----CCC----ccc--CCcceeEEEEE-----ecCeEEEEEEcCCC
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEG-----L----PPD----RIV--PTVGLNIGRIE-----VSNSKLVFWDLGGQ   78 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~-----~----~~~----~~~--~~~~~~~~~~~-----~~~~~~~i~D~~G~   78 (170)
                      +|+++|+.|+|||||++++.........     .    ..+    ...  .++......+.     .....+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999763322210     0    000    010  11111111221     23467999999999


Q ss_pred             CcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848           79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP  138 (170)
Q Consensus        79 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~  138 (170)
                      ..+......+++.+|++++|+|+.+..+... ..++.....    .+.|+++++||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence            9998888888999999999999987765532 233333322    358999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.72  E-value=8.7e-17  Score=122.78  Aligned_cols=138  Identities=22%  Similarity=0.236  Sum_probs=89.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc-----c----hhhHHHH
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-----L----RSIWEKY   88 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----~----~~~~~~~   88 (170)
                      ..|+++|-|++|||||+|+|.+.-......   ...-|-+-.+....+.+..+.++||+|-+.     +    .......
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D---~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~A   80 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSD---TPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIA   80 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeec---CCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence            579999999999999999997632211111   111222333445777888899999999432     2    2344456


Q ss_pred             hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      +.++|++|+|+|....-+-+  .+.+..++..   .+.|+++|.||+|-.  ...+...+++. .++    -..+++||.
T Consensus        81 i~eADvilfvVD~~~Git~~--D~~ia~~Lr~---~~kpviLvvNK~D~~--~~e~~~~efys-lG~----g~~~~ISA~  148 (444)
T COG1160          81 IEEADVILFVVDGREGITPA--DEEIAKILRR---SKKPVILVVNKIDNL--KAEELAYEFYS-LGF----GEPVPISAE  148 (444)
T ss_pred             HHhCCEEEEEEeCCCCCCHH--HHHHHHHHHh---cCCCEEEEEEcccCc--hhhhhHHHHHh-cCC----CCceEeehh
Confidence            78999999999998754432  2333333332   578999999999975  33334444444 333    257888887


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       149 Hg  150 (444)
T COG1160         149 HG  150 (444)
T ss_pred             hc
Confidence            65

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.72  E-value=2.4e-16  Score=113.21  Aligned_cols=147  Identities=24%  Similarity=0.238  Sum_probs=88.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh-cccCCCCCCC-------c--ccC-------Ccce-----------------eEEEEE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV-YSNVEGLPPD-------R--IVP-------TVGL-----------------NIGRIE   64 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~-~~~~~~~~~~-------~--~~~-------~~~~-----------------~~~~~~   64 (170)
                      |++++|+.++|||||++++... ..+..+....       +  ...       ..+.                 ....+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            5899999999999999999641 1110000000       0  000       0000                 012234


Q ss_pred             ecCeEEEEEEcCCCCcchhhHHHHhh--ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC
Q 030848           65 VSNSKLVFWDLGGQPGLRSIWEKYYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS  142 (170)
Q Consensus        65 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~  142 (170)
                      ..+..+.++||||++.+.......+.  .+|++++|+|++.... ......+..+..    .+.|+++++||+|+.++..
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~----~~ip~ivvvNK~D~~~~~~  155 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA----LNIPVFVVVTKIDLAPANI  155 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEECccccCHHH
Confidence            45678999999999888665554443  6899999999886543 222333333322    3678999999999876443


Q ss_pred             HHHHHh----HhCccc---------------------cccceeEEEeeeccCC
Q 030848          143 ADELAR----YLDLKK---------------------LDERVCMFEAVSGYDG  170 (170)
Q Consensus       143 ~~~~~~----~~~~~~---------------------~~~~~~~~~~~Sa~~g  170 (170)
                      ..+..+    .++..+                     .....+|++.+||.+|
T Consensus       156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg  208 (224)
T cd04165         156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTG  208 (224)
T ss_pred             HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCc
Confidence            333333    333111                     1233569999999987

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PLN03127 Elongation factor Tu; Provisional

Probab=99.72  E-value=2.9e-16  Score=122.84  Aligned_cols=152  Identities=20%  Similarity=0.167  Sum_probs=96.0

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccC----------CCCCCCc--ccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNV----------EGLPPDR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~----------~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   80 (170)
                      ..++.++|+++|+.++|||||+++|.+.....          .+...++  ...|+......++.++.++.++||||+..
T Consensus        57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~  136 (447)
T PLN03127         57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD  136 (447)
T ss_pred             cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence            36788999999999999999999996421110          0111111  12244444445555677899999999988


Q ss_pred             chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCccccCC-HH----HHHhHhCccc
Q 030848           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVS-AD----ELARYLDLKK  154 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii~v~nK~D~~~~~~-~~----~~~~~~~~~~  154 (170)
                      +.......+..+|++++|+|++....- ...+.+..+..    .+.| +++++||+|+.+... .+    ++.+.+....
T Consensus       137 f~~~~~~g~~~aD~allVVda~~g~~~-qt~e~l~~~~~----~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~  211 (447)
T PLN03127        137 YVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ----VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK  211 (447)
T ss_pred             hHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH----cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence            876666666789999999998765332 22333333322    3567 578999999975222 11    2223332223


Q ss_pred             cccceeEEEeeeccC
Q 030848          155 LDERVCMFEAVSGYD  169 (170)
Q Consensus       155 ~~~~~~~~~~~Sa~~  169 (170)
                      .....+|++++||..
T Consensus       212 ~~~~~vpiip~Sa~s  226 (447)
T PLN03127        212 FPGDEIPIIRGSALS  226 (447)
T ss_pred             CCCCcceEEEeccce
Confidence            334568999998863

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.71  E-value=2.8e-16  Score=107.39  Aligned_cols=138  Identities=22%  Similarity=0.218  Sum_probs=79.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCc--ceeEEEEEecCeEEEEEEcCCCCc----------chhhHH
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTV--GLNIGRIEVSNSKLVFWDLGGQPG----------LRSIWE   86 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~   86 (170)
                      .|+++|++|+|||||++.+.+      ........++.  ......+... ..+.+|||||...          +.....
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~------~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   73 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTN------RKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIE   73 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhc------CCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHH
Confidence            379999999999999999983      11111111111  1111122222 3899999999432          233334


Q ss_pred             HHhh---ccCEEEEEEeCCCcccHHH--HHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccc-cccee
Q 030848           87 KYYE---EAHAVVFVIDAACPSRFED--SKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL-DERVC  160 (170)
Q Consensus        87 ~~~~---~~~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~  160 (170)
                      .++.   ..+.+++++|.++..+...  +..++..       .+.|+++++||+|+............+..... .....
T Consensus        74 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~-------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~  146 (170)
T cd01876          74 EYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE-------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDP  146 (170)
T ss_pred             HHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHH-------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCC
Confidence            4443   4578899999886643222  2222221       25789999999999654433333222221110 23456


Q ss_pred             EEEeeeccCC
Q 030848          161 MFEAVSGYDG  170 (170)
Q Consensus       161 ~~~~~Sa~~g  170 (170)
                      +++++||++|
T Consensus       147 ~~~~~Sa~~~  156 (170)
T cd01876         147 PIILFSSLKG  156 (170)
T ss_pred             ceEEEecCCC
Confidence            7899999875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.71  E-value=8.8e-16  Score=100.99  Aligned_cols=144  Identities=23%  Similarity=0.363  Sum_probs=104.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE-EE---ecCeEEEEEEcCCCCcc-hhhHHHHhh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IE---VSNSKLVFWDLGGQPGL-RSIWEKYYE   90 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~i~D~~G~~~~-~~~~~~~~~   90 (170)
                      +..|++|+|.-++|||+++..+.--    ........-||++..+.. ++   +..-.+.++||.|-... .++-..|++
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg----~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q   83 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYG----NHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQ   83 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhc----cCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhc
Confidence            4579999999999999999999641    122233445666554432 21   23356999999996555 556667888


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      -+|+.++||+..+++||+.....-..|-.....+.+||++++||+|+.+  +...+-+..-++     .+.+...+++|.
T Consensus        84 ~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~-----rEkvkl~eVta~  158 (198)
T KOG3883|consen   84 FADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAK-----REKVKLWEVTAM  158 (198)
T ss_pred             cCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHh-----hhheeEEEEEec
Confidence            9999999999999999998887777776666667899999999999954  444544444444     444556666654

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.71  E-value=2.6e-17  Score=124.04  Aligned_cols=157  Identities=19%  Similarity=0.249  Sum_probs=102.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCC--------------CC-----------CC--cccCCcceeEEEEEec
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG--------------LP-----------PD--RIVPTVGLNIGRIEVS   66 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~--------------~~-----------~~--~~~~~~~~~~~~~~~~   66 (170)
                      .++.++++++|+..+||||++-+|+-....+..              ..           .+  ....|+......+...
T Consensus         4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~   83 (428)
T COG5256           4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD   83 (428)
T ss_pred             CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence            578999999999999999999998433222221              10           11  1122455555566667


Q ss_pred             CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHH---HHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cC
Q 030848           67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE---DSKTALEKVLRNEDLQGAPLLILANKQDLPD--AV  141 (170)
Q Consensus        67 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~  141 (170)
                      ...+.|+|+||+..+..-....+..+|+.|+|+|+++.+...   ...+..+.++-.....-..+|+++||+|+.+  +.
T Consensus        84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~  163 (428)
T COG5256          84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEE  163 (428)
T ss_pred             CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHH
Confidence            788999999999998887777889999999999998774211   1111111111111112456899999999986  22


Q ss_pred             CHH----HHHhHhCccccccceeEEEeeeccCC
Q 030848          142 SAD----ELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       142 ~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      -.+    ++....+..++....++|+|+||.+|
T Consensus       164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G  196 (428)
T COG5256         164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKG  196 (428)
T ss_pred             HHHHHHHHHHHHHHHcCCCccCCeEEecccccC
Confidence            222    22333334556666899999999987

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.70  E-value=1.3e-15  Score=125.34  Aligned_cols=149  Identities=17%  Similarity=0.079  Sum_probs=96.6

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCC--CCCC------------cccCCcceeEEEEEecCeEEEEEEcCCCCcc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG--LPPD------------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL   81 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   81 (170)
                      +..+|+++|++++|||||++++.........  ....            ....|+......+.+++..+.+|||||+..+
T Consensus         9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~   88 (689)
T TIGR00484         9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF   88 (689)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence            3458999999999999999999653222110  0000            1122444445567778899999999999888


Q ss_pred             hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeE
Q 030848           82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCM  161 (170)
Q Consensus        82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  161 (170)
                      ...+...++.+|++++|+|+.+....+. ...+.....    .+.|+++++||+|+.... .++..+.++...-......
T Consensus        89 ~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~~----~~~p~ivviNK~D~~~~~-~~~~~~~i~~~l~~~~~~~  162 (689)
T TIGR00484        89 TVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQANR----YEVPRIAFVNKMDKTGAN-FLRVVNQIKQRLGANAVPI  162 (689)
T ss_pred             hHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHHHH----cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCceeE
Confidence            7778888999999999999987654432 233333322    467999999999998644 3333333321111122234


Q ss_pred             EEeeeccCC
Q 030848          162 FEAVSGYDG  170 (170)
Q Consensus       162 ~~~~Sa~~g  170 (170)
                      .+++|+..|
T Consensus       163 ~ipis~~~~  171 (689)
T TIGR00484       163 QLPIGAEDN  171 (689)
T ss_pred             EeccccCCC
Confidence            666776543

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=2.3e-16  Score=104.95  Aligned_cols=130  Identities=38%  Similarity=0.631  Sum_probs=109.0

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   94 (170)
                      ++.-|+++.|--++|||||++.+-.  ...     ....||..-+.....+.+..++-+|++|+..-+..|..|+..+|+
T Consensus        18 kK~gKllFlGLDNAGKTTLLHMLKd--Drl-----~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~   90 (193)
T KOG0077|consen   18 KKFGKLLFLGLDNAGKTTLLHMLKD--DRL-----GQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDA   90 (193)
T ss_pred             ccCceEEEEeecCCchhhHHHHHcc--ccc-----cccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhce
Confidence            5667999999999999999999954  111     233345555555678889999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC
Q 030848           95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD  151 (170)
Q Consensus        95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~  151 (170)
                      +++.+|+-+.+.+.+.+.....++......+.|+++.+||+|.+.+.+.++.+..+.
T Consensus        91 iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~  147 (193)
T KOG0077|consen   91 IVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLG  147 (193)
T ss_pred             eEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHH
Confidence            999999999999999988888887766667899999999999999888777766554

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.70  E-value=1.7e-15  Score=98.16  Aligned_cols=107  Identities=24%  Similarity=0.356  Sum_probs=69.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcc---------hhhHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL---------RSIWEKYY   89 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~   89 (170)
                      +|+++|.+|+|||||+|+|.+.....   .......|.......+...+..+.++||||-...         .......+
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~---~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~   77 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAK---VSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQI   77 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSE---ESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHhcccccc---ccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHH
Confidence            68999999999999999998621111   1111223333334456778899999999994321         11233344


Q ss_pred             hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 030848           90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK  134 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK  134 (170)
                      +.+|++++|+|++++.. +.....+..+    . .+.|+++|+||
T Consensus        78 ~~~d~ii~vv~~~~~~~-~~~~~~~~~l----~-~~~~~i~v~NK  116 (116)
T PF01926_consen   78 SKSDLIIYVVDASNPIT-EDDKNILREL----K-NKKPIILVLNK  116 (116)
T ss_dssp             CTESEEEEEEETTSHSH-HHHHHHHHHH----H-TTSEEEEEEES
T ss_pred             HHCCEEEEEEECCCCCC-HHHHHHHHHH----h-cCCCEEEEEcC
Confidence            78999999999776322 2233333333    2 57899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.69  E-value=1.2e-15  Score=112.64  Aligned_cols=117  Identities=21%  Similarity=0.241  Sum_probs=81.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCC-------CCCC-------cccCCcceeEEEEEecCeEEEEEEcCCCCcchhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEG-------LPPD-------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI   84 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   84 (170)
                      +|+++|++|+|||||++++.........       ....       ....++......+.+.+..+.+|||||...+...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            5899999999999999999652211110       0000       0122333444456677889999999999888777


Q ss_pred             HHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030848           85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA  140 (170)
Q Consensus        85 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~  140 (170)
                      +...++.+|++++|+|+++...... ...+.....    .+.|.++++||+|+.+.
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~~----~~~p~iivvNK~D~~~~  131 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGT-EKLWEFADE----AGIPRIIFINKMDRERA  131 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCccCCC
Confidence            7888899999999999987655432 223333222    46799999999999875

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.69  E-value=9.4e-17  Score=125.09  Aligned_cols=146  Identities=16%  Similarity=0.187  Sum_probs=103.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcc---cCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI---VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ++..+||+++|+.|+|||||+-++..      ...++..   .+-+.+.. .+.-......++|++..++.+......++
T Consensus         6 t~kdVRIvliGD~G~GKtSLImSL~~------eef~~~VP~rl~~i~IPa-dvtPe~vpt~ivD~ss~~~~~~~l~~Eir   78 (625)
T KOG1707|consen    6 TLKDVRIVLIGDEGVGKTSLIMSLLE------EEFVDAVPRRLPRILIPA-DVTPENVPTSIVDTSSDSDDRLCLRKEIR   78 (625)
T ss_pred             CccceEEEEECCCCccHHHHHHHHHh------hhccccccccCCccccCC-ccCcCcCceEEEecccccchhHHHHHHHh
Confidence            46789999999999999999999976      2222222   22222221 12223456899999987777777777789


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCccccCCH--H-HHHhHhCccccccceeEEEee
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPDAVSA--D-ELARYLDLKKLDERVCMFEAV  165 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~ii~v~nK~D~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~  165 (170)
                      ++|+++++++.+++.+++.+...|..+++...  ..+.|+|+|+||+|.......  + +....+.   ...+.-.+++|
T Consensus        79 kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~---~f~EiEtciec  155 (625)
T KOG1707|consen   79 KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMI---AFAEIETCIEC  155 (625)
T ss_pred             hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHH---HhHHHHHHHhh
Confidence            99999999999999999999888888877654  357899999999999763332  1 1222222   12233357888


Q ss_pred             eccC
Q 030848          166 SGYD  169 (170)
Q Consensus       166 Sa~~  169 (170)
                      ||++
T Consensus       156 SA~~  159 (625)
T KOG1707|consen  156 SALT  159 (625)
T ss_pred             hhhh
Confidence            8875

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=1.2e-15  Score=118.41  Aligned_cols=145  Identities=23%  Similarity=0.299  Sum_probs=105.3

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe---cCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---SNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      ...-++++|+...|||||+..++.  +++........  |..+.-+.+..   ....+.++||||++.|..++.+..+-+
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~--t~Va~~EaGGI--TQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vt   79 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRK--TNVAAGEAGGI--TQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVT   79 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhc--CccccccCCce--eeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccc
Confidence            345689999999999999999987  44544444444  33444444554   346899999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccc----cceeEEEeeecc
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLD----ERVCMFEAVSGY  168 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~  168 (170)
                      |.+++|+++++.-.-+.. +.+...    ...+.|+++.+||+|.++ ..++.....++..++.    .....++++||+
T Consensus        80 DIaILVVa~dDGv~pQTi-EAI~ha----k~a~vP~iVAiNKiDk~~-~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~  153 (509)
T COG0532          80 DIAILVVAADDGVMPQTI-EAINHA----KAAGVPIVVAINKIDKPE-ANPDKVKQELQEYGLVPEEWGGDVIFVPVSAK  153 (509)
T ss_pred             cEEEEEEEccCCcchhHH-HHHHHH----HHCCCCEEEEEecccCCC-CCHHHHHHHHHHcCCCHhhcCCceEEEEeecc
Confidence            999999999976443322 222222    225899999999999984 5555555555545542    335789999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       154 tg  155 (509)
T COG0532         154 TG  155 (509)
T ss_pred             CC
Confidence            87

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.67  E-value=7.4e-16  Score=120.59  Aligned_cols=155  Identities=16%  Similarity=0.073  Sum_probs=95.1

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE-----------------EE----------
Q 030848           12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-----------------IE----------   64 (170)
Q Consensus        12 ~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~----------   64 (170)
                      +.++.+++|.++|+..+|||||+.+|.+.......... ...-|+.+.+..                 ..          
T Consensus        29 ~~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~-~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (460)
T PTZ00327         29 ISRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREK-VRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCP  107 (460)
T ss_pred             ccCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhH-HhCCchhccccccccccCcccCCcccccccCCCcccccccc
Confidence            46789999999999999999999999764332111000 000111111100                 00          


Q ss_pred             ------ecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848           65 ------VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP  138 (170)
Q Consensus        65 ------~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~  138 (170)
                            .....+.++|+||++.+.......+..+|++++|+|++.+.......+.+. +....  .-.++++++||+|+.
T Consensus       108 ~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~l--gi~~iIVvlNKiDlv  184 (460)
T PTZ00327        108 GCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIM--KLKHIIILQNKIDLV  184 (460)
T ss_pred             cccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHc--CCCcEEEEEeccccc
Confidence                  002468999999999988777777789999999999987421122222222 22222  234789999999997


Q ss_pred             ccCCHHHHHhHhCcc--ccccceeEEEeeeccCC
Q 030848          139 DAVSADELARYLDLK--KLDERVCMFEAVSGYDG  170 (170)
Q Consensus       139 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~g  170 (170)
                      +....++..+.++..  .......+++++||++|
T Consensus       185 ~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G  218 (460)
T PTZ00327        185 KEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLK  218 (460)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCC
Confidence            644333333333211  11235789999999986

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.67  E-value=9.4e-16  Score=108.28  Aligned_cols=113  Identities=21%  Similarity=0.373  Sum_probs=64.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccC-CcceeEEEEEe-cCeEEEEEEcCCCCcchhhHHHH-----h
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP-TVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKY-----Y   89 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~-----~   89 (170)
                      +++|+++|.+|+|||||+|++.+......+........ +...  ..+.. ....+.+|||||..........+     +
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~   78 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKR--TPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKF   78 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCc--eeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCc
Confidence            47899999999999999999987322111111111101 1111  11111 13468999999964432222222     5


Q ss_pred             hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848           90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP  138 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~  138 (170)
                      .++|+++++.+.    .+......+...+..   .+.|+++|+||+|+.
T Consensus        79 ~~~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~  120 (197)
T cd04104          79 SEYDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRD  120 (197)
T ss_pred             cCcCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccch
Confidence            678888887532    233333333333333   257899999999984

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.67  E-value=1.4e-16  Score=105.03  Aligned_cols=149  Identities=19%  Similarity=0.226  Sum_probs=110.3

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE----EEecCeEEEEEEcCCCCcchhhHHHH
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFWDLGGQPGLRSIWEKY   88 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~   88 (170)
                      .+.-.++|.++|++..|||||+-...+      +...+.+..+.+++...    +...+..+.+||++|++++..+.+..
T Consensus        16 ~n~Vslkv~llGD~qiGKTs~mvkYV~------~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPia   89 (205)
T KOG1673|consen   16 SNLVSLKVGLLGDAQIGKTSLMVKYVQ------NEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIA   89 (205)
T ss_pred             ccceEEEEEeecccccCceeeehhhhc------chhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCcee
Confidence            345678999999999999999988866      44445666677776552    34456779999999999999998888


Q ss_pred             hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC--ccccccceeEEEeee
Q 030848           89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD--LKKLDERVCMFEAVS  166 (170)
Q Consensus        89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~S  166 (170)
                      .+++-+++++||++.++++..+.+|+.+...... ...| +++++|-|+.-..+++-..+...  +.+....+.+.+.||
T Consensus        90 c~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~Nk-tAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~S  167 (205)
T KOG1673|consen   90 CKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNK-TAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCS  167 (205)
T ss_pred             ecCcEEEEEEEecCchHHHHHHHHHHHHHhccCC-ccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEee
Confidence            8999999999999999999999999998865432 3344 67899999764333332222111  233347778888888


Q ss_pred             ccC
Q 030848          167 GYD  169 (170)
Q Consensus       167 a~~  169 (170)
                      +.+
T Consensus       168 ts~  170 (205)
T KOG1673|consen  168 TSH  170 (205)
T ss_pred             ccc
Confidence            754

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.67  E-value=1.5e-15  Score=112.17  Aligned_cols=131  Identities=26%  Similarity=0.370  Sum_probs=100.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC-------CCcchhhHHHHhh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG-------QPGLRSIWEKYYE   90 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-------~~~~~~~~~~~~~   90 (170)
                      ..|.+||-|++|||||++.++.+.+.+.++.+++..|+.++-..   ....++.+-|.||       ..-+...+...+.
T Consensus       160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE  236 (369)
T COG0536         160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIE  236 (369)
T ss_pred             cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHH
Confidence            45789999999999999999999999999999999999888432   4556799999999       2233445666778


Q ss_pred             ccCEEEEEEeCCCcc---cHHHHHHHHHHHHcC-CCCCCCcEEEEeeCCCccc-cCCHHHHHhHhC
Q 030848           91 EAHAVVFVIDAACPS---RFEDSKTALEKVLRN-EDLQGAPLLILANKQDLPD-AVSADELARYLD  151 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~~-~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~  151 (170)
                      +|.+++.|+|++..+   ..++......++..+ ....+.|.++++||+|++. ++..++..+.++
T Consensus       237 Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~  302 (369)
T COG0536         237 RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALA  302 (369)
T ss_pred             hhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHH
Confidence            999999999998654   356666666666544 3346789999999999544 455555555555

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.67  E-value=1.5e-15  Score=100.55  Aligned_cols=123  Identities=23%  Similarity=0.297  Sum_probs=86.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC----CCcchhhHHHHhhccCE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----QPGLRSIWEKYYEEAHA   94 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----~~~~~~~~~~~~~~~~~   94 (170)
                      ||.+||+.|+|||||+++|.+        ....+..|..+.     +.   =.++||||    +..+.........++|.
T Consensus         3 rimliG~~g~GKTTL~q~L~~--------~~~~~~KTq~i~-----~~---~~~IDTPGEyiE~~~~y~aLi~ta~dad~   66 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNG--------EEIRYKKTQAIE-----YY---DNTIDTPGEYIENPRFYHALIVTAQDADV   66 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcC--------CCCCcCccceeE-----ec---ccEEECChhheeCHHHHHHHHHHHhhCCE
Confidence            799999999999999999965        112333343332     11   13489999    44555555666689999


Q ss_pred             EEEEEeCCCccc-HHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc-ccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           95 VVFVIDAACPSR-FEDSKTALEKVLRNEDLQGAPLLILANKQDLP-DAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        95 ~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +++|.|++++.+ +..      .+...   -+.|+|=|+||+|+. +....+...+.++..+..    .++++|+.+|
T Consensus        67 V~ll~dat~~~~~~pP------~fa~~---f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~  131 (143)
T PF10662_consen   67 VLLLQDATEPRSVFPP------GFASM---FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTG  131 (143)
T ss_pred             EEEEecCCCCCccCCc------hhhcc---cCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCC
Confidence            999999998643 221      11111   357899999999998 456777777777766664    3699999876

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=8.7e-16  Score=119.14  Aligned_cols=146  Identities=22%  Similarity=0.257  Sum_probs=108.9

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEE
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   95 (170)
                      ...-+.++|+...|||||+..+++  +.+.........+-++.....++ .+.++++.||||+..|..++.+..+.+|.+
T Consensus       152 RpPVVTiMGHVDHGKTTLLD~lRk--s~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIv  228 (683)
T KOG1145|consen  152 RPPVVTIMGHVDHGKTTLLDALRK--SSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIV  228 (683)
T ss_pred             CCCeEEEeecccCChhhHHHHHhh--CceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEE
Confidence            456789999999999999999987  54554555555556666555555 678999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccc----cceeEEEeeeccCC
Q 030848           96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLD----ERVCMFEAVSGYDG  170 (170)
Q Consensus        96 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~g  170 (170)
                      ++|+.++|.-.-+. .+.+...    ...+.|+|+.+||+|.++.....-..+.+. .++.    .-.+.++++||++|
T Consensus       229 VLVVAadDGVmpQT-~EaIkhA----k~A~VpiVvAinKiDkp~a~pekv~~eL~~-~gi~~E~~GGdVQvipiSAl~g  301 (683)
T KOG1145|consen  229 VLVVAADDGVMPQT-LEAIKHA----KSANVPIVVAINKIDKPGANPEKVKRELLS-QGIVVEDLGGDVQVIPISALTG  301 (683)
T ss_pred             EEEEEccCCccHhH-HHHHHHH----HhcCCCEEEEEeccCCCCCCHHHHHHHHHH-cCccHHHcCCceeEEEeecccC
Confidence            99999987644332 2222222    225899999999999987655554444444 3332    23678999999987

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.66  E-value=1.1e-15  Score=121.61  Aligned_cols=131  Identities=22%  Similarity=0.245  Sum_probs=89.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCC--C--------C-C-CC------cccCCcceeEEEEEecCeEEEEEEcCC
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVE--G--------L-P-PD------RIVPTVGLNIGRIEVSNSKLVFWDLGG   77 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~--~--------~-~-~~------~~~~~~~~~~~~~~~~~~~~~i~D~~G   77 (170)
                      ...+|+++|+.++|||||++++......+.  +        . . .+      ....++......+.+++..+.+|||||
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG   88 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG   88 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence            456899999999999999999964222111  0        0 0 00      011233333446778889999999999


Q ss_pred             CCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC---HHHHHhHhC
Q 030848           78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLD  151 (170)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~---~~~~~~~~~  151 (170)
                      +..+.......++.+|++|+|+|+++.... ....++....    ..+.|+++++||+|+.....   .+++.+.+.
T Consensus        89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~----~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~  160 (526)
T PRK00741         89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCR----LRDTPIFTFINKLDRDGREPLELLDEIEEVLG  160 (526)
T ss_pred             chhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHH----hcCCCEEEEEECCcccccCHHHHHHHHHHHhC
Confidence            998887777788999999999999875322 2333333322    25789999999999877543   345555554

>PRK12739 elongation factor G; Reviewed

Probab=99.65  E-value=9.5e-15  Score=120.21  Aligned_cols=122  Identities=19%  Similarity=0.119  Sum_probs=85.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCC--CC----------C--CcccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG--LP----------P--DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~--~~----------~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   80 (170)
                      ....+|+++|+.++|||||++++.........  ..          .  ....-|+......+.+.+..+.++||||+..
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   85 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD   85 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence            34568999999999999999999653221110  00          0  0122344444556777889999999999888


Q ss_pred             chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC
Q 030848           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV  141 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~  141 (170)
                      +...+...++.+|++|+|+|+.+....+ ....+.....    .+.|+++++||+|+.+..
T Consensus        86 f~~e~~~al~~~D~~ilVvDa~~g~~~q-t~~i~~~~~~----~~~p~iv~iNK~D~~~~~  141 (691)
T PRK12739         86 FTIEVERSLRVLDGAVAVFDAVSGVEPQ-SETVWRQADK----YGVPRIVFVNKMDRIGAD  141 (691)
T ss_pred             HHHHHHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHH----cCCCEEEEEECCCCCCCC
Confidence            8777888889999999999998764332 2233333322    467899999999998643

>cd01850 CDC_Septin CDC/Septin

Probab=99.64  E-value=1.7e-15  Score=111.93  Aligned_cols=121  Identities=17%  Similarity=0.256  Sum_probs=69.2

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCC----CCCcccCCcceeEEE--EEecC--eEEEEEEcCCCCcc---hhh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL----PPDRIVPTVGLNIGR--IEVSN--SKLVFWDLGGQPGL---RSI   84 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~--~~~~i~D~~G~~~~---~~~   84 (170)
                      -.++|+++|.+|+|||||+|++.+..-.....    ......+|.......  +...+  .++.+|||||....   ...
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            36899999999999999999997621111110    011133444444332  23333  57999999993211   000


Q ss_pred             H-----------HH------------Hhh--ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           85 W-----------EK------------YYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        85 ~-----------~~------------~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      +           ..            .+.  ++|+++|+++.+.......-...+..+.     ...|+++|+||+|+..
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~-----~~v~vi~VinK~D~l~  157 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLS-----KRVNIIPVIAKADTLT  157 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHh-----ccCCEEEEEECCCcCC
Confidence            0           11            111  4788888888764221121133333332     2589999999999965


Q ss_pred             cC
Q 030848          140 AV  141 (170)
Q Consensus       140 ~~  141 (170)
                      +.
T Consensus       158 ~~  159 (276)
T cd01850         158 PE  159 (276)
T ss_pred             HH
Confidence            33

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.64  E-value=5.3e-15  Score=117.77  Aligned_cols=136  Identities=21%  Similarity=0.285  Sum_probs=95.6

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCC------CcchhhHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ------PGLRSIWEKYY   89 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~------~~~~~~~~~~~   89 (170)
                      +..+++++|+|++|||||+|++.+....+.    +...-|.+-....+..++..+.++|+||-      ........+++
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q~Vg----NwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~l   77 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQKVG----NWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFL   77 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCceec----CCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHH
Confidence            346799999999999999999987322222    23334555555567778888999999991      11111222232


Q ss_pred             --hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc----CCHHHHHhHhCccccccceeEEE
Q 030848           90 --EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA----VSADELARYLDLKKLDERVCMFE  163 (170)
Q Consensus        90 --~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~  163 (170)
                        .+.|+++.|+|++|-   +.......++++    -+.|++++.|++|...+    .+.+++.+.+        ++|++
T Consensus        78 l~~~~D~ivnVvDAtnL---eRnLyltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~L--------GvPVv  142 (653)
T COG0370          78 LEGKPDLIVNVVDATNL---ERNLYLTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLL--------GVPVV  142 (653)
T ss_pred             hcCCCCEEEEEcccchH---HHHHHHHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHh--------CCCEE
Confidence              457999999999875   555555566666    37789999999998763    4455555554        47899


Q ss_pred             eeeccCC
Q 030848          164 AVSGYDG  170 (170)
Q Consensus       164 ~~Sa~~g  170 (170)
                      ++||++|
T Consensus       143 ~tvA~~g  149 (653)
T COG0370         143 PTVAKRG  149 (653)
T ss_pred             EEEeecC
Confidence            9999986

>TIGR00503 prfC peptide chain release factor 3

Probab=99.64  E-value=1.1e-14  Score=116.06  Aligned_cols=132  Identities=19%  Similarity=0.187  Sum_probs=87.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCC------C-----CCC-------cccCCcceeEEEEEecCeEEEEEEcC
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG------L-----PPD-------RIVPTVGLNIGRIEVSNSKLVFWDLG   76 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~------~-----~~~-------~~~~~~~~~~~~~~~~~~~~~i~D~~   76 (170)
                      ....+|+++|++++|||||+++++.....+..      .     ...       ....++......+++++..+.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            34568999999999999999998532211110      0     000       01123333344577788999999999


Q ss_pred             CCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC---CHHHHHhHhC
Q 030848           77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV---SADELARYLD  151 (170)
Q Consensus        77 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~---~~~~~~~~~~  151 (170)
                      |+..+.......++.+|++|+|+|+.+.-. .....++. ....   .+.|+++++||+|+....   -.+++.+.+.
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~-~~~~---~~~PiivviNKiD~~~~~~~~ll~~i~~~l~  161 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLME-VTRL---RDTPIFTFMNKLDRDIRDPLELLDEVENELK  161 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHH-HHHh---cCCCEEEEEECccccCCCHHHHHHHHHHHhC
Confidence            998887767777899999999999986422 22333333 2222   468999999999986532   2344444444

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK00007 elongation factor G; Reviewed

Probab=99.64  E-value=1.4e-14  Score=119.15  Aligned_cols=150  Identities=15%  Similarity=0.044  Sum_probs=96.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCC--CC----------C--CcccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG--LP----------P--DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~--~~----------~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   80 (170)
                      .+..+|+++|.+++|||||++++.........  ..          .  ....-|+......+.+.+..+.++||||+..
T Consensus         8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~   87 (693)
T PRK00007          8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD   87 (693)
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence            34568999999999999999999642221110  00          0  0112233333445677889999999999887


Q ss_pred             chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccccccee
Q 030848           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC  160 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  160 (170)
                      +.......++.+|++++|+|+...-..+. ...+..+..    .+.|.++++||+|+.+.. ..+..+.++...-.....
T Consensus        88 f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~----~~~p~iv~vNK~D~~~~~-~~~~~~~i~~~l~~~~~~  161 (693)
T PRK00007         88 FTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK----YKVPRIAFVNKMDRTGAD-FYRVVEQIKDRLGANPVP  161 (693)
T ss_pred             HHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH----cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCeee
Confidence            76667777899999999999876543332 333333332    367889999999998644 333444443222222334


Q ss_pred             EEEeeeccCC
Q 030848          161 MFEAVSGYDG  170 (170)
Q Consensus       161 ~~~~~Sa~~g  170 (170)
                      ..+++||..|
T Consensus       162 ~~ipisa~~~  171 (693)
T PRK00007        162 IQLPIGAEDD  171 (693)
T ss_pred             EEecCccCCc
Confidence            5667777653

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.64  E-value=1.1e-14  Score=100.69  Aligned_cols=121  Identities=23%  Similarity=0.303  Sum_probs=75.9

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC----------CCcch
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----------QPGLR   82 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~   82 (170)
                      ......-|+++|.+++|||||+|++.+..  .....+.....|..+++  +++.+. +.++|+||          .+...
T Consensus        20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k--~LArtSktPGrTq~iNf--f~~~~~-~~lVDlPGYGyAkv~k~~~e~w~   94 (200)
T COG0218          20 PEDDLPEIAFAGRSNVGKSSLINALTNQK--NLARTSKTPGRTQLINF--FEVDDE-LRLVDLPGYGYAKVPKEVKEKWK   94 (200)
T ss_pred             CCCCCcEEEEEccCcccHHHHHHHHhCCc--ceeecCCCCCccceeEE--EEecCc-EEEEeCCCcccccCCHHHHHHHH
Confidence            34455689999999999999999998721  11122223333444443  333332 89999999          22233


Q ss_pred             hhHHHHhh---ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCH
Q 030848           83 SIWEKYYE---EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA  143 (170)
Q Consensus        83 ~~~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~  143 (170)
                      .+...|++   +-.++++++|+..+....+. +.+ +++.   ..+.|+++++||+|.......
T Consensus        95 ~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~-~~l~---~~~i~~~vv~tK~DKi~~~~~  153 (200)
T COG0218          95 KLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMI-EFLL---ELGIPVIVVLTKADKLKKSER  153 (200)
T ss_pred             HHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHH-HHHH---HcCCCeEEEEEccccCChhHH
Confidence            34445554   35688889999876554322 222 2222   258999999999999875444

>PRK13351 elongation factor G; Reviewed

Probab=99.63  E-value=1.4e-14  Score=119.42  Aligned_cols=121  Identities=24%  Similarity=0.208  Sum_probs=89.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCC-------CCCCC-------cccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-------GLPPD-------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~-------~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   80 (170)
                      ....+|+++|+.|+|||||++++........       +....       ....|+......+.+.+..+.+|||||+.+
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d   85 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID   85 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence            3557899999999999999999975322110       00111       233455555667778889999999999999


Q ss_pred             chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030848           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA  140 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~  140 (170)
                      +...+..+++.+|++++|+|+++....+.. ..+.....    .+.|+++++||+|+...
T Consensus        86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~~----~~~p~iiviNK~D~~~~  140 (687)
T PRK13351         86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQADR----YGIPRLIFINKMDRVGA  140 (687)
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHh----cCCCEEEEEECCCCCCC
Confidence            888888899999999999999887665533 33333322    46899999999999874

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=8.2e-15  Score=101.59  Aligned_cols=124  Identities=29%  Similarity=0.446  Sum_probs=88.4

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhh---
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYE---   90 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---   90 (170)
                      ++..-.++++|+.+||||+|+-.+..      +.....+ +.+..+...+......+.++|.||+.+.+.-...+++   
T Consensus        35 rs~~~~Vll~Gl~dSGKT~LF~qL~~------gs~~~Tv-tSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~  107 (238)
T KOG0090|consen   35 RSKQNAVLLVGLSDSGKTSLFTQLIT------GSHRGTV-TSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNY  107 (238)
T ss_pred             hccCCcEEEEecCCCCceeeeeehhc------CCccCee-eeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccc
Confidence            33446799999999999999999875      2222222 2333333345555666999999999999887777777   


Q ss_pred             ccCEEEEEEeCCC-cccHHHHHHHHHHHHcCC--CCCCCcEEEEeeCCCccccCCHH
Q 030848           91 EAHAVVFVIDAAC-PSRFEDSKTALEKVLRNE--DLQGAPLLILANKQDLPDAVSAD  144 (170)
Q Consensus        91 ~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~--~~~~~~ii~v~nK~D~~~~~~~~  144 (170)
                      .+.++++|+|..- +....++.+.+..++...  ....+|++++.||.|+.-+.+.+
T Consensus       108 ~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~  164 (238)
T KOG0090|consen  108 SAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAE  164 (238)
T ss_pred             cceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHH
Confidence            7899999998753 334566777777776543  35679999999999997544433

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=5.9e-15  Score=114.55  Aligned_cols=149  Identities=17%  Similarity=0.138  Sum_probs=101.6

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCC-----------cccCCcceeEEEEEecC---eEEEEEEcCCCCc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD-----------RIVPTVGLNIGRIEVSN---SKLVFWDLGGQPG   80 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~---~~~~i~D~~G~~~   80 (170)
                      .+.-++.+|-+...|||||..+++..+.-+.....+           +..-|+....-.+.+++   ..+.++||||+..
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            344579999999999999999997765533322111           11123333333344444   8899999999999


Q ss_pred             chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccccccee
Q 030848           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC  160 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  160 (170)
                      |.....+.+.-|+++|+|+|+++.-.-+.....+..+..     +..+|.|+||+|++.+....-..+..+...  ....
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~-----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~--~~~~  210 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA-----GLAIIPVLNKIDLPSADPERVENQLFELFD--IPPA  210 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc-----CCeEEEeeeccCCCCCCHHHHHHHHHHHhc--CCcc
Confidence            999899889999999999999976554444444444433     566999999999987544333333332222  3344


Q ss_pred             EEEeeeccCC
Q 030848          161 MFEAVSGYDG  170 (170)
Q Consensus       161 ~~~~~Sa~~g  170 (170)
                      +.+-+|||+|
T Consensus       211 ~~i~vSAK~G  220 (650)
T KOG0462|consen  211 EVIYVSAKTG  220 (650)
T ss_pred             ceEEEEeccC
Confidence            7888999987

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.63  E-value=7.1e-15  Score=103.72  Aligned_cols=120  Identities=13%  Similarity=0.029  Sum_probs=74.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcc-------hhhH----H
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL-------RSIW----E   86 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~----~   86 (170)
                      ++|+++|.+|+||||++|.|.+..  ...........|..+........+..+.++||||-...       ....    .
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~--~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGRE--VFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCC--ccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            479999999999999999998732  11111112233555555556678889999999993221       1111    1


Q ss_pred             HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCC-CCCcEEEEeeCCCccccC
Q 030848           87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL-QGAPLLILANKQDLPDAV  141 (170)
Q Consensus        87 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~ii~v~nK~D~~~~~  141 (170)
                      ...+..|++|+|+++.. .+ +.....+..+....+. ...++++++|++|.....
T Consensus        79 ~~~~g~~~illVi~~~~-~t-~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~  132 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FT-EEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGG  132 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cC-HHHHHHHHHHHHHhChHhHhcEEEEEECccccCCC
Confidence            22356899999999886 22 2222333333332221 125789999999987644

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>COG2262 HflX GTPases [General function prediction only]

Probab=99.62  E-value=1.4e-14  Score=109.48  Aligned_cols=142  Identities=26%  Similarity=0.319  Sum_probs=95.4

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec-CeEEEEEEcCCCCc---------chhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPG---------LRSI   84 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~---------~~~~   84 (170)
                      ..-..|.++|.+++|||||+|++.+......    +..+.|..-+...+.+. +..+.+-||.|.-.         |.++
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~----d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksT  265 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVA----DQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKST  265 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeecc----ccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHH
Confidence            3556899999999999999999976433333    34445555556667776 57899999999322         2222


Q ss_pred             HHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEe
Q 030848           85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA  164 (170)
Q Consensus        85 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (170)
                      .. ....+|.++.|+|+++|...+.+... ..++...+....|++.+.||+|+.....   ....+.     ......+.
T Consensus       266 LE-E~~~aDlllhVVDaSdp~~~~~~~~v-~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~-----~~~~~~v~  335 (411)
T COG2262         266 LE-EVKEADLLLHVVDASDPEILEKLEAV-EDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELE-----RGSPNPVF  335 (411)
T ss_pred             HH-HhhcCCEEEEEeecCChhHHHHHHHH-HHHHHHcCCCCCCEEEEEecccccCchh---hhhhhh-----hcCCCeEE
Confidence            22 23679999999999999555544443 3444444446799999999999865443   222222     11115788


Q ss_pred             eeccCC
Q 030848          165 VSGYDG  170 (170)
Q Consensus       165 ~Sa~~g  170 (170)
                      +||++|
T Consensus       336 iSA~~~  341 (411)
T COG2262         336 ISAKTG  341 (411)
T ss_pred             EEeccC
Confidence            899886

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.60  E-value=2.4e-14  Score=107.52  Aligned_cols=83  Identities=22%  Similarity=0.346  Sum_probs=58.4

Q ss_pred             EEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEE-------------------E-ecCeEEEEEEcCCC-
Q 030848           20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI-------------------E-VSNSKLVFWDLGGQ-   78 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~-~~~~~~~i~D~~G~-   78 (170)
                      |+++|.+++|||||+|++.+.........+....|+.+......                   + .....+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            57999999999999999987544444444555566665544311                   1 13367999999995 


Q ss_pred             ---Ccchh---hHHHHhhccCEEEEEEeCC
Q 030848           79 ---PGLRS---IWEKYYEEAHAVVFVIDAA  102 (170)
Q Consensus        79 ---~~~~~---~~~~~~~~~~~~i~v~d~~  102 (170)
                         ++...   .+...++++|++++|+|++
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               33333   3344589999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.59  E-value=2.7e-14  Score=104.83  Aligned_cols=87  Identities=25%  Similarity=0.383  Sum_probs=69.2

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC-------CCcchhhHHHH
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG-------QPGLRSIWEKY   88 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-------~~~~~~~~~~~   88 (170)
                      ....+++||.|++|||||++++.+..++...+.+++..+.-+.    +.+++..++++|+||       ...........
T Consensus        62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~----l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv  137 (365)
T COG1163          62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGM----LEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSV  137 (365)
T ss_pred             CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccce----EeecCceEEEEcCcccccCcccCCCCcceeeee
Confidence            4578999999999999999999998788887777666555554    889999999999998       12222345556


Q ss_pred             hhccCEEEEEEeCCCccc
Q 030848           89 YEEAHAVVFVIDAACPSR  106 (170)
Q Consensus        89 ~~~~~~~i~v~d~~~~~~  106 (170)
                      .+.||.+++|+|+..+..
T Consensus       138 ~R~ADlIiiVld~~~~~~  155 (365)
T COG1163         138 ARNADLIIIVLDVFEDPH  155 (365)
T ss_pred             eccCCEEEEEEecCCChh
Confidence            799999999999986543

>PRK09866 hypothetical protein; Provisional

Probab=99.57  E-value=1.4e-13  Score=109.73  Aligned_cols=100  Identities=25%  Similarity=0.246  Sum_probs=63.5

Q ss_pred             eEEEEEEcCCCCc-----chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC-
Q 030848           68 SKLVFWDLGGQPG-----LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV-  141 (170)
Q Consensus        68 ~~~~i~D~~G~~~-----~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~-  141 (170)
                      .++.++||||-..     +.......+.++|++|+|+|++...+..+ ......+ ...+ ++.|+++++||+|+.+.. 
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~L-kk~~-K~~PVILVVNKIDl~dree  306 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAI-LAVG-QSVPLYVLVNKFDQQDRNS  306 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHH-HhcC-CCCCEEEEEEcccCCCccc
Confidence            4789999999422     23334456899999999999987544333 2222233 2221 235999999999986532 


Q ss_pred             -CHHHHHhHhCcc--ccccceeEEEeeeccCC
Q 030848          142 -SADELARYLDLK--KLDERVCMFEAVSGYDG  170 (170)
Q Consensus       142 -~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~g  170 (170)
                       ..+.+.+.+...  ........++++||++|
T Consensus       307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG  338 (741)
T PRK09866        307 DDADQVRALISGTLMKGCITPQQIFPVSSMWG  338 (741)
T ss_pred             chHHHHHHHHHHHHHhcCCCCceEEEEeCCCC
Confidence             255555554311  12234567999999986

>cd00066 G-alpha G protein alpha subunit

Probab=99.55  E-value=8.8e-14  Score=104.80  Aligned_cols=85  Identities=24%  Similarity=0.479  Sum_probs=74.6

Q ss_pred             CCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCc----------ccHHHHHHHHHHHHcCCCC
Q 030848           54 PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP----------SRFEDSKTALEKVLRNEDL  123 (170)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~  123 (170)
                      +|+++....+.+.+..+.+||++|+...+..|..++.+++++|+|+|+++-          ..+.+....+..+.+....
T Consensus       147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~  226 (317)
T cd00066         147 KTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF  226 (317)
T ss_pred             ccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence            577777777888889999999999999999999999999999999999863          4577888888999888777


Q ss_pred             CCCcEEEEeeCCCcc
Q 030848          124 QGAPLLILANKQDLP  138 (170)
Q Consensus       124 ~~~~ii~v~nK~D~~  138 (170)
                      .+.|+++++||.|+.
T Consensus       227 ~~~pill~~NK~D~f  241 (317)
T cd00066         227 ANTSIILFLNKKDLF  241 (317)
T ss_pred             cCCCEEEEccChHHH
Confidence            889999999999964

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>smart00275 G_alpha G protein alpha subunit

Probab=99.55  E-value=9.3e-14  Score=105.54  Aligned_cols=85  Identities=22%  Similarity=0.430  Sum_probs=74.8

Q ss_pred             CCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCc----------ccHHHHHHHHHHHHcCCCC
Q 030848           54 PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP----------SRFEDSKTALEKVLRNEDL  123 (170)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~  123 (170)
                      +|++.....+...+..+.+||++|+...+..|..++.+++++|+|+|+++-          ..+++....++.+.+....
T Consensus       170 ~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~  249 (342)
T smart00275      170 PTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF  249 (342)
T ss_pred             CccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence            577777777888888999999999999999999999999999999999863          4578888899999887777


Q ss_pred             CCCcEEEEeeCCCcc
Q 030848          124 QGAPLLILANKQDLP  138 (170)
Q Consensus       124 ~~~~ii~v~nK~D~~  138 (170)
                      .+.|+++++||.|+.
T Consensus       250 ~~~piil~~NK~D~~  264 (342)
T smart00275      250 ANTSIILFLNKIDLF  264 (342)
T ss_pred             cCCcEEEEEecHHhH
Confidence            889999999999985

Subunit of G proteins that contains the guanine nucleotide binding site

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.54  E-value=1.6e-13  Score=99.93  Aligned_cols=124  Identities=13%  Similarity=0.064  Sum_probs=74.4

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcch--h--------
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR--S--------   83 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--~--------   83 (170)
                      ....++|+++|.+|+|||||+|+|.+......+   .....|...........+..+.+|||||-.+..  .        
T Consensus        28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~---~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~  104 (249)
T cd01853          28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATS---AFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILS  104 (249)
T ss_pred             ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccC---CCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHH
Confidence            356799999999999999999999873211111   111223333344455677889999999944331  1        


Q ss_pred             hHHHHhh--ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCC-CCCcEEEEeeCCCcccc
Q 030848           84 IWEKYYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL-QGAPLLILANKQDLPDA  140 (170)
Q Consensus        84 ~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~ii~v~nK~D~~~~  140 (170)
                      ....++.  ..+++++|..++....-......+..+....+. -..++++|.||+|...+
T Consensus       105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p  164 (249)
T cd01853         105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP  164 (249)
T ss_pred             HHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence            1222332  468888887666543222222333333332221 12579999999998653

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.54  E-value=1.1e-14  Score=112.11  Aligned_cols=148  Identities=14%  Similarity=0.111  Sum_probs=103.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCC-------CcchhhH--H
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ-------PGLRSIW--E   86 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~~~~~~--~   86 (170)
                      +.-.++++|.|++|||||+|.+.....++..    ..+.|..+....++++-..++++||||-       .+..++.  -
T Consensus       167 ~trTlllcG~PNVGKSSf~~~vtradvevqp----YaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsIT  242 (620)
T KOG1490|consen  167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQP----YAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT  242 (620)
T ss_pred             CcCeEEEecCCCCCcHhhcccccccccccCC----cccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHH
Confidence            4568999999999999999999764444442    2334555556677788888999999991       1111111  1


Q ss_pred             HHhhccCEEEEEEeCCCc--ccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEe
Q 030848           87 KYYEEAHAVVFVIDAACP--SRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA  164 (170)
Q Consensus        87 ~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (170)
                      ...+--.+|||++|++..  .+.++....++.+.-..  .+.|+|+|+||+|+.+.++.++..+.+-....+.-.+++++
T Consensus       243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF--aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~  320 (620)
T KOG1490|consen  243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF--ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQ  320 (620)
T ss_pred             HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh--cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEE
Confidence            223444689999999855  46677778888886554  48899999999999987766655543333333445588999


Q ss_pred             eeccC
Q 030848          165 VSGYD  169 (170)
Q Consensus       165 ~Sa~~  169 (170)
                      +|+.+
T Consensus       321 tS~~~  325 (620)
T KOG1490|consen  321 TSCVQ  325 (620)
T ss_pred             ecccc
Confidence            98764

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.54  E-value=6.2e-14  Score=106.38  Aligned_cols=115  Identities=17%  Similarity=0.293  Sum_probs=64.4

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHH-----h
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKY-----Y   89 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~-----~   89 (170)
                      ...++|+|+|++|+|||||+|++++...+..+........|+.....+..-+-.++.+||+||--........|     +
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~  112 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF  112 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence            36789999999999999999999886565555555555455444444443444579999999932221122222     4


Q ss_pred             hccCEEEEEEeCCCcccHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 030848           90 EEAHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDL  137 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~v~nK~D~  137 (170)
                      ...|.+|++.+-.    |... ......+..    .+.|+.+|-||+|.
T Consensus       113 ~~yD~fiii~s~r----f~~ndv~La~~i~~----~gK~fyfVRTKvD~  153 (376)
T PF05049_consen  113 YRYDFFIIISSER----FTENDVQLAKEIQR----MGKKFYFVRTKVDS  153 (376)
T ss_dssp             GG-SEEEEEESSS------HHHHHHHHHHHH----TT-EEEEEE--HHH
T ss_pred             cccCEEEEEeCCC----CchhhHHHHHHHHH----cCCcEEEEEecccc
Confidence            6789888887533    4333 333334433    47789999999996

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.54  E-value=1.7e-13  Score=97.84  Aligned_cols=121  Identities=17%  Similarity=0.107  Sum_probs=71.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC-------cchhhH----H
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-------GLRSIW----E   86 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------~~~~~~----~   86 (170)
                      ++|+++|.+|+||||++|.|++.  ............|..+........+..+.++||||--       +.....    .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~--~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGK--EVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS--S-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcc--cceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            58999999999999999999872  2222222222335555566668889999999999921       111111    1


Q ss_pred             HHhhccCEEEEEEeCCCcc-cHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC
Q 030848           87 KYYEEAHAVVFVIDAACPS-RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS  142 (170)
Q Consensus        87 ~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~  142 (170)
                      ......|++|+|++++... .......++..++...  -...+++++|..|...+..
T Consensus        79 ~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~--~~k~~ivvfT~~d~~~~~~  133 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE--IWKHTIVVFTHADELEDDS  133 (212)
T ss_dssp             HTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG--GGGGEEEEEEEGGGGTTTT
T ss_pred             hccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH--HHhHhhHHhhhcccccccc
Confidence            2235689999999988221 1233333444444321  1246899999998877554

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.53  E-value=4.7e-14  Score=101.61  Aligned_cols=121  Identities=21%  Similarity=0.331  Sum_probs=78.5

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHh-hcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc-------chhh
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKS-VYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-------LRSI   84 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~   84 (170)
                      ..++.++++++|.+|+||||++|+++. ....+..... ...++...   ...+....+.+||+||-.+       ++..
T Consensus        35 ~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~-~t~~~~~~---~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~  110 (296)
T COG3596          35 TEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGV-GTDITTRL---RLSYDGENLVLWDTPGLGDGKDKDAEHRQL  110 (296)
T ss_pred             cccCceeEEEecCCCCcHHHHHHHHHhccCceeeeccc-CCCchhhH---HhhccccceEEecCCCcccchhhhHHHHHH
Confidence            356889999999999999999999984 0011110100 11111111   1223446799999999333       5666


Q ss_pred             HHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030848           85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA  140 (170)
Q Consensus        85 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~  140 (170)
                      ...++.+.|.+++++++.++.--.+...+..-+...   -+.++++++|++|...+
T Consensus       111 ~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~---~~~~~i~~VtQ~D~a~p  163 (296)
T COG3596         111 YRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILG---LDKRVLFVVTQADRAEP  163 (296)
T ss_pred             HHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhc---cCceeEEEEehhhhhcc
Confidence            677889999999999999876443333333333332   24789999999998654

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.52  E-value=2.2e-13  Score=112.56  Aligned_cols=131  Identities=18%  Similarity=0.120  Sum_probs=84.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCC--------CCCC----cccCCcceeEE----EEEecCeEEEEEEcCCC
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG--------LPPD----RIVPTVGLNIG----RIEVSNSKLVFWDLGGQ   78 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~--------~~~~----~~~~~~~~~~~----~~~~~~~~~~i~D~~G~   78 (170)
                      ....+|+++|+.++|||||++++.........        ....    ....|+.....    .++..+..+.+|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            34568999999999999999999642111100        0000    01123332221    24556788999999999


Q ss_pred             CcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc---cCCHHHHHhHh
Q 030848           79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD---AVSADELARYL  150 (170)
Q Consensus        79 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~---~~~~~~~~~~~  150 (170)
                      ..+.......++.+|++|+|+|+.+.-..+. ...+.....    .+.|.++++||+|...   ....+++.+.+
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~----~~~p~ivviNKiD~~~~~~~~~~~~~~~~~  166 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK----ENVKPVLFINKVDRLINELKLTPQELQERF  166 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH----cCCCEEEEEEChhcccchhcCCHHHHHHHH
Confidence            9888777888899999999999986433222 222222222    3567889999999864   23444444444

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>cd01882 BMS1 Bms1

Probab=99.52  E-value=2.6e-13  Score=97.67  Aligned_cols=141  Identities=20%  Similarity=0.211  Sum_probs=83.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   94 (170)
                      .+...|+++|.+|+|||||++.+........      .....+ .+......+.++.++||||.-  ..+ ....+.+|+
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~------~~~~~g-~i~i~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDv  106 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQN------ISDIKG-PITVVTGKKRRLTFIECPNDI--NAM-IDIAKVADL  106 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCc------cccccc-cEEEEecCCceEEEEeCCchH--HHH-HHHHHhcCE
Confidence            4557799999999999999999976321110      101111 111233467889999999854  333 334588999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCccccC-CHHHHHhHhCcccc--ccceeEEEeeeccCC
Q 030848           95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAV-SADELARYLDLKKL--DERVCMFEAVSGYDG  170 (170)
Q Consensus        95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii~v~nK~D~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~g  170 (170)
                      +++|+|++....... ...+..+ ..   .+.| +++++||+|+.+.. ..++..+.++....  .....+++.+||++.
T Consensus       107 VllviDa~~~~~~~~-~~i~~~l-~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~  181 (225)
T cd01882         107 VLLLIDASFGFEMET-FEFLNIL-QV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVH  181 (225)
T ss_pred             EEEEEecCcCCCHHH-HHHHHHH-HH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccC
Confidence            999999986544322 2222222 22   2445 55699999997432 23333333332111  123468999998763

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=1.8e-13  Score=105.25  Aligned_cols=152  Identities=18%  Similarity=0.182  Sum_probs=89.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc-ch--------hhH
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-LR--------SIW   85 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~--------~~~   85 (170)
                      +..+.|+++|.|++|||||+|.|.+....+....+......+..   .++.++.++.+.||+|-.+ -.        ...
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea---~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA  342 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEA---QVTVNGVPVRLSDTAGIREESNDGIEALGIERA  342 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhhee---EeecCCeEEEEEeccccccccCChhHHHhHHHH
Confidence            45689999999999999999999763222222222222222222   4778999999999999433 11        111


Q ss_pred             HHHhhccCEEEEEEeCC--CcccHHHHHHHHHHHHcC-----CCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccc
Q 030848           86 EKYYEEAHAVVFVIDAA--CPSRFEDSKTALEKVLRN-----EDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLD  156 (170)
Q Consensus        86 ~~~~~~~~~~i~v~d~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~  156 (170)
                      ..-+..+|++++|+|+.  +-++...+...+......     ....+.|++++.||.|+...  ........+.+. ...
T Consensus       343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~  421 (531)
T KOG1191|consen  343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGR  421 (531)
T ss_pred             HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccC
Confidence            22357899999999994  333333333333333211     11245799999999999875  222223333332 111


Q ss_pred             cceeEEEeeeccCC
Q 030848          157 ERVCMFEAVSGYDG  170 (170)
Q Consensus       157 ~~~~~~~~~Sa~~g  170 (170)
                      .......++|++++
T Consensus       422 ~~~~i~~~vs~~tk  435 (531)
T KOG1191|consen  422 SVFPIVVEVSCTTK  435 (531)
T ss_pred             cccceEEEeeechh
Confidence            22233444777654

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.51  E-value=1.2e-13  Score=105.91  Aligned_cols=145  Identities=17%  Similarity=0.139  Sum_probs=100.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC-CC----------cccCCcceeEEEE-----EecCeEEEEEEcCCCC
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP-PD----------RIVPTVGLNIGRI-----EVSNSKLVFWDLGGQP   79 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~-~~----------~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~   79 (170)
                      +.-+..++-+-..|||||..|+...+....... ..          +..-|+.......     +++...+.++||||+.
T Consensus         8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV   87 (603)
T COG0481           8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV   87 (603)
T ss_pred             hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence            334688999999999999999966433322210 00          1112333333332     3355789999999999


Q ss_pred             cchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCH---HHHHhHhCccccc
Q 030848           80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA---DELARYLDLKKLD  156 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~---~~~~~~~~~~~~~  156 (170)
                      .|.-..++.+..|.++|+|+|+++.-.-+.+...+..+-     .+..++-|+||+||+.+...   .++++.+.     
T Consensus        88 DFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adpervk~eIe~~iG-----  157 (603)
T COG0481          88 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADPERVKQEIEDIIG-----  157 (603)
T ss_pred             ceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCHHHHHHHHHHHhC-----
Confidence            998888888899999999999998755455555555553     35679999999999986543   34444444     


Q ss_pred             cceeEEEeeeccCC
Q 030848          157 ERVCMFEAVSGYDG  170 (170)
Q Consensus       157 ~~~~~~~~~Sa~~g  170 (170)
                      ......+.+|||+|
T Consensus       158 id~~dav~~SAKtG  171 (603)
T COG0481         158 IDASDAVLVSAKTG  171 (603)
T ss_pred             CCcchheeEecccC
Confidence            34446788999997

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.50  E-value=1e-13  Score=102.89  Aligned_cols=153  Identities=16%  Similarity=0.132  Sum_probs=102.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhccc------------CC--CCCCC---------------cccCCcceeEEEEE
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSN------------VE--GLPPD---------------RIVPTVGLNIGRIE   64 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~------------~~--~~~~~---------------~~~~~~~~~~~~~~   64 (170)
                      .+..+|++-+|...-|||||+-|++.....            ..  +....               +..-|+++.+..+.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            467799999999999999999998432111            11  11101               11236666677777


Q ss_pred             ecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCC
Q 030848           65 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVS  142 (170)
Q Consensus        65 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~  142 (170)
                      -...+|.+-||||++++.+-......-||.+|+++|+...  ..+.-.-...+...++  =..+++..||+||.+  +.-
T Consensus        83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLLG--IrhvvvAVNKmDLvdy~e~~  158 (431)
T COG2895          83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLLG--IRHVVVAVNKMDLVDYSEEV  158 (431)
T ss_pred             cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHhC--CcEEEEEEeeecccccCHHH
Confidence            7889999999999999988777778999999999999743  2111112222222222  245899999999987  334


Q ss_pred             HHHHHhHhC--ccccccceeEEEeeeccCC
Q 030848          143 ADELARYLD--LKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       143 ~~~~~~~~~--~~~~~~~~~~~~~~Sa~~g  170 (170)
                      .+++.+.+.  ...+......++|+||..|
T Consensus       159 F~~I~~dy~~fa~~L~~~~~~~IPiSAl~G  188 (431)
T COG2895         159 FEAIVADYLAFAAQLGLKDVRFIPISALLG  188 (431)
T ss_pred             HHHHHHHHHHHHHHcCCCcceEEechhccC
Confidence            444444433  1223344558999999876

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=5.9e-14  Score=102.99  Aligned_cols=151  Identities=17%  Similarity=0.147  Sum_probs=99.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCC------------CcccCCccee---EE----EEE------ecCeE
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP------------DRIVPTVGLN---IG----RIE------VSNSK   69 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~------------~~~~~~~~~~---~~----~~~------~~~~~   69 (170)
                      +++++|.++|+...||||++.++.+.+.+......            ........+.   .+    .+.      ---..
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            68999999999999999999999775544322100            0000000000   00    000      01246


Q ss_pred             EEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC----HHH
Q 030848           70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS----ADE  145 (170)
Q Consensus        70 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~----~~~  145 (170)
                      +.++|.||++-+..+..+...-.|++|+|++++.++..-...+.+..+-- .  .-..++++-||+|+..++.    -++
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleI-i--gik~iiIvQNKIDlV~~E~AlE~y~q  164 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEI-I--GIKNIIIVQNKIDLVSRERALENYEQ  164 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhh-h--ccceEEEEecccceecHHHHHHHHHH
Confidence            99999999999888777777788999999999988776555555544422 1  1345899999999987443    333


Q ss_pred             HHhHhCccccccceeEEEeeeccCC
Q 030848          146 LARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +.++.+  +.-.++.|++++||..+
T Consensus       165 Ik~Fvk--Gt~Ae~aPIIPiSA~~~  187 (415)
T COG5257         165 IKEFVK--GTVAENAPIIPISAQHK  187 (415)
T ss_pred             HHHHhc--ccccCCCceeeehhhhc
Confidence            444443  33456789999999764

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.48  E-value=1.1e-12  Score=95.91  Aligned_cols=116  Identities=23%  Similarity=0.297  Sum_probs=73.0

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc------c------h
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG------L------R   82 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------~------~   82 (170)
                      ++.++|+|+|+|++|||||.|.+.+.  .+... ..+.-.|.......+.-...++.++||||-..      .      .
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mig~--kv~~v-S~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l  146 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMIGQ--KVSAV-SRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL  146 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhhCC--ccccc-cccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence            45689999999999999999999762  11111 11121222222334666778999999999211      1      1


Q ss_pred             hhHHHHhhccCEEEEEEeCCCcccHH--HHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           83 SIWEKYYEEAHAVVFVIDAACPSRFE--DSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        83 ~~~~~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      +-....+..+|.+++|+|+++....-  .+......+      .+.|-+++.||.|...
T Consensus       147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k  199 (379)
T KOG1423|consen  147 QNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLK  199 (379)
T ss_pred             hCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcch
Confidence            11122357899999999999754332  122222222      4677899999999754

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.48  E-value=2.4e-12  Score=95.56  Aligned_cols=123  Identities=7%  Similarity=-0.024  Sum_probs=71.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh---hHHHHhh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS---IWEKYYE   90 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~   90 (170)
                      ....++|+++|.+|+||||++|+|.+......+...   ..+...........+..+.+|||||-.+...   .....++
T Consensus        35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~---s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik  111 (313)
T TIGR00991        35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQ---SEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIK  111 (313)
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCC---CcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHH
Confidence            356789999999999999999999873211111111   1111111223345678999999999554321   1111222


Q ss_pred             ------ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCccc
Q 030848           91 ------EAHAVVFVIDAACPSRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPD  139 (170)
Q Consensus        91 ------~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~ii~v~nK~D~~~  139 (170)
                            ..|++|||..++.....+.....+..+....+ .-..++++++|+.|..+
T Consensus       112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~  167 (313)
T TIGR00991       112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP  167 (313)
T ss_pred             HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence                  58999999766543222222333333333222 12357899999999764

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.48  E-value=4.6e-16  Score=105.44  Aligned_cols=145  Identities=21%  Similarity=0.340  Sum_probs=106.4

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe---cCeEEEEEEcCCCCcchhhHHHHhh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV---SNSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      .-.+++|+|..|+||++++.+...      ......+..+++..+-  ....   .-.++.+||..||+++..+.--+++
T Consensus        24 hL~k~lVig~~~vgkts~i~ryv~------~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyyk   97 (229)
T KOG4423|consen   24 HLFKVLVIGDLGVGKTSSIKRYVH------QNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYK   97 (229)
T ss_pred             hhhhhheeeeccccchhHHHHHHH------HHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEec
Confidence            446899999999999999999865      2223334445444322  1222   2256899999999999988888999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCC---CcEEEEeeCCCccccCCH---HHHHhHhCccccccceeEEEe
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG---APLLILANKQDLPDAVSA---DELARYLDLKKLDERVCMFEA  164 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~ii~v~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  164 (170)
                      .+++..+|||++...+|+....|...+-.....++   .|+++..||||.......   ....++.+..++    ....+
T Consensus        98 ea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf----~gwte  173 (229)
T KOG4423|consen   98 EAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGF----EGWTE  173 (229)
T ss_pred             CCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCc----cceee
Confidence            99999999999999999999999998876655443   688999999999763322   344444443333    36788


Q ss_pred             eeccCC
Q 030848          165 VSGYDG  170 (170)
Q Consensus       165 ~Sa~~g  170 (170)
                      +|+|.+
T Consensus       174 ts~Ken  179 (229)
T KOG4423|consen  174 TSAKEN  179 (229)
T ss_pred             eccccc
Confidence            888753

>PRK12740 elongation factor G; Reviewed

Probab=99.44  E-value=3.1e-12  Score=105.38  Aligned_cols=114  Identities=22%  Similarity=0.191  Sum_probs=80.8

Q ss_pred             EcCCCCChHHHHHHHHhhcccCCC--------CCCC------cccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHH
Q 030848           23 LGIDKAGKTTLLEKLKSVYSNVEG--------LPPD------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKY   88 (170)
Q Consensus        23 vG~~~~GKSsl~~~l~~~~~~~~~--------~~~~------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~   88 (170)
                      +|+.++|||||++++.........        ...+      ....|+......+.+.+..+.+|||||+..+...+...
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            699999999999999553222111        0000      12234555555677888999999999998887777888


Q ss_pred             hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC
Q 030848           89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV  141 (170)
Q Consensus        89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~  141 (170)
                      ++.+|++++|+|+++....+.. ..+..+..    .+.|+++++||+|+....
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~----~~~p~iiv~NK~D~~~~~  128 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK----YGVPRIIFVNKMDRAGAD  128 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH----cCCCEEEEEECCCCCCCC
Confidence            8999999999999876554432 33333322    367999999999997643

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.43  E-value=3.6e-12  Score=87.56  Aligned_cols=63  Identities=24%  Similarity=0.262  Sum_probs=44.4

Q ss_pred             EEEEEEcCCC----CcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 030848           69 KLVFWDLGGQ----PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ  135 (170)
Q Consensus        69 ~~~i~D~~G~----~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~  135 (170)
                      .+.|+||||-    ......+..+++.+|++|+|.++++..+......+......    ....+++|.||+
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~----~~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP----DKSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT----TCSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC----CCCeEEEEEcCC
Confidence            6999999993    22336778888999999999999986665544444444432    344589999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PTZ00258 GTP-binding protein; Provisional

Probab=99.42  E-value=4.7e-12  Score=97.14  Aligned_cols=86  Identities=21%  Similarity=0.289  Sum_probs=57.6

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec-----------------CeEEEEEEc
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-----------------NSKLVFWDL   75 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~i~D~   75 (170)
                      .....++|+++|.|++|||||+|++.+......+....+..+..+.    +.+.                 +.++.++|+
T Consensus        17 ~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~----v~~~d~r~~~l~~~~~~~~~~~aqi~lvDt   92 (390)
T PTZ00258         17 RPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTAR----VNVPDERFDWLCKHFKPKSIVPAQLDITDI   92 (390)
T ss_pred             cCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEE----EecccchhhHHHHHcCCcccCCCCeEEEEC
Confidence            3467789999999999999999999764333333333333333322    3332                 345999999


Q ss_pred             CCCC-------cchhhHHHHhhccCEEEEEEeCC
Q 030848           76 GGQP-------GLRSIWEKYYEEAHAVVFVIDAA  102 (170)
Q Consensus        76 ~G~~-------~~~~~~~~~~~~~~~~i~v~d~~  102 (170)
                      ||-.       .+...+...++++|++++|+|..
T Consensus        93 pGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         93 AGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            9922       23334455678999999999974

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.42  E-value=6.6e-12  Score=104.14  Aligned_cols=119  Identities=17%  Similarity=0.094  Sum_probs=77.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC----------CCcc--cCCcceeEEEEE----ecCeEEEEEEcCCCC
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP----------PDRI--VPTVGLNIGRIE----VSNSKLVFWDLGGQP   79 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~----------~~~~--~~~~~~~~~~~~----~~~~~~~i~D~~G~~   79 (170)
                      +..+|+++|+.++|||||+.++...........          ..+.  .-|+......+.    ..+..+.++||||+.
T Consensus        19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~   98 (731)
T PRK07560         19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV   98 (731)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence            344799999999999999999965322211100          0000  012222211222    246779999999999


Q ss_pred             cchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      .+.......++.+|++|+|+|+...-..+ ....+.....    .+.|.++++||+|...
T Consensus        99 df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~----~~~~~iv~iNK~D~~~  153 (731)
T PRK07560         99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALR----ERVKPVLFINKVDRLI  153 (731)
T ss_pred             ChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHH----cCCCeEEEEECchhhc
Confidence            98888888889999999999987653322 3333333322    2456799999999864

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.41  E-value=6.1e-12  Score=105.59  Aligned_cols=119  Identities=15%  Similarity=0.090  Sum_probs=79.6

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC----------CCccc--CCcceeEEEEEe----------------c
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP----------PDRIV--PTVGLNIGRIEV----------------S   66 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~----------~~~~~--~~~~~~~~~~~~----------------~   66 (170)
                      ....+|+++|+.++|||||++++...........          ..+..  -|+......+.+                .
T Consensus        17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (843)
T PLN00116         17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN   96 (843)
T ss_pred             cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence            3456899999999999999999965332111110          00000  121211112222                2


Q ss_pred             CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848           67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP  138 (170)
Q Consensus        67 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~  138 (170)
                      +..+.++||||+.++.......++.+|++|+|+|+...-..+. ...+.....    .+.|+++++||+|.+
T Consensus        97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~  163 (843)
T PLN00116         97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC  163 (843)
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence            5678999999999998888888899999999999987644332 333334333    478999999999997

>PTZ00416 elongation factor 2; Provisional

Probab=99.40  E-value=4.1e-12  Score=106.50  Aligned_cols=118  Identities=15%  Similarity=0.102  Sum_probs=78.6

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCC----C------CCCccc--CCcceeEEEEEec----------CeEEEEE
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG----L------PPDRIV--PTVGLNIGRIEVS----------NSKLVFW   73 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~----~------~~~~~~--~~~~~~~~~~~~~----------~~~~~i~   73 (170)
                      ...+|+++|+.++|||||++++.........    .      ...+..  .|+......+.+.          +..+.++
T Consensus        18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li   97 (836)
T PTZ00416         18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI   97 (836)
T ss_pred             CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence            4458999999999999999999753221111    0      000011  1111111122222          4679999


Q ss_pred             EcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848           74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP  138 (170)
Q Consensus        74 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~  138 (170)
                      ||||+.++.......++.+|++|+|+|+...-..+ ....+..+..    .+.|+++++||+|+.
T Consensus        98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~----~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ----ERIRPVLFINKVDRA  157 (836)
T ss_pred             cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH----cCCCEEEEEEChhhh
Confidence            99999988877788889999999999998764433 2334444433    367999999999997

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.40  E-value=4.4e-13  Score=97.04  Aligned_cols=70  Identities=20%  Similarity=0.129  Sum_probs=36.9

Q ss_pred             EEEEEEcCCCCcchhhHHHHh--------hccCEEEEEEeCCCcccHHHHHHH-HHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           69 KLVFWDLGGQPGLRSIWEKYY--------EEAHAVVFVIDAACPSRFEDSKTA-LEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        69 ~~~i~D~~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      .+.++|||||.++...+...-        ...-++++++|+.....-...... +...... -..+.|.+.++||+|+.+
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~-~~~~lP~vnvlsK~Dl~~  170 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIM-LRLELPHVNVLSKIDLLS  170 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHH-HHHTSEEEEEE--GGGS-
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHH-hhCCCCEEEeeeccCccc
Confidence            799999999999876655443        234578889988644332222111 1111111 114789999999999976

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.39  E-value=1e-11  Score=95.32  Aligned_cols=149  Identities=18%  Similarity=0.227  Sum_probs=101.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCC--------CCCcccCCccee----EEEEEecCeEEEEEEcCCCCcchhh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGL--------PPDRIVPTVGLN----IGRIEVSNSKLVFWDLGGQPGLRSI   84 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~--------~~~~~~~~~~~~----~~~~~~~~~~~~i~D~~G~~~~~~~   84 (170)
                      --+|.++-+...|||||+..++.........        .+......-+++    -..+.+++..+.|+||||+..|...
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE   84 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE   84 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence            3479999999999999999996532111110        011111111222    2257788999999999999999999


Q ss_pred             HHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC---cccc--ccce
Q 030848           85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD---LKKL--DERV  159 (170)
Q Consensus        85 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~---~~~~--~~~~  159 (170)
                      ..+.+.=+|++++++|+.....-+ .+......+.    .+.+-|+|+||+|.+.+-+.+-+.+.+.   ....  +...
T Consensus        85 VERvl~MVDgvlLlVDA~EGpMPQ-TrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd  159 (603)
T COG1217          85 VERVLSMVDGVLLLVDASEGPMPQ-TRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD  159 (603)
T ss_pred             hhhhhhhcceEEEEEEcccCCCCc-hhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence            999999999999999998765433 3334444433    2555688999999998666555555544   2222  3446


Q ss_pred             eEEEeeeccCC
Q 030848          160 CMFEAVSGYDG  170 (170)
Q Consensus       160 ~~~~~~Sa~~g  170 (170)
                      .|++..||+.|
T Consensus       160 FPivYAS~~~G  170 (603)
T COG1217         160 FPIVYASARNG  170 (603)
T ss_pred             CcEEEeeccCc
Confidence            78888899876

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=4.1e-12  Score=92.46  Aligned_cols=157  Identities=17%  Similarity=0.155  Sum_probs=105.8

Q ss_pred             HHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccC----------CCCCCCcccCCcceeEEEE--EecCeEEEEEE
Q 030848            7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNV----------EGLPPDRIVPTVGLNIGRI--EVSNSKLVFWD   74 (170)
Q Consensus         7 ~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~D   74 (170)
                      +.|.+  +++.++|..+|+.+.|||||..+|.......          .+..++....-+.++..++  ...+..+..+|
T Consensus         4 ~kf~r--~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVD   81 (394)
T COG0050           4 EKFER--TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVD   81 (394)
T ss_pred             hhhcC--CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEecc
Confidence            34444  7899999999999999999999985433321          1112222223333333333  44578899999


Q ss_pred             cCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc-----CCHHHHHhH
Q 030848           75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA-----VSADELARY  149 (170)
Q Consensus        75 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~-----~~~~~~~~~  149 (170)
                      +||+..+..-......+.|+.|+|+.+++...-+. ++.+.-. .+.  .-..+++++||+|+.+.     .-..|.++.
T Consensus        82 cPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqT-rEHiLla-rqv--Gvp~ivvflnK~Dmvdd~ellelVemEvreL  157 (394)
T COG0050          82 CPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLA-RQV--GVPYIVVFLNKVDMVDDEELLELVEMEVREL  157 (394)
T ss_pred             CCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcc-hhhhhhh-hhc--CCcEEEEEEecccccCcHHHHHHHHHHHHHH
Confidence            99999887766666678899999999987654332 1111111 111  23468889999999872     234567777


Q ss_pred             hCccccccceeEEEeeeccC
Q 030848          150 LDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus       150 ~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +..+.+.....|++.-||..
T Consensus       158 Ls~y~f~gd~~Pii~gSal~  177 (394)
T COG0050         158 LSEYGFPGDDTPIIRGSALK  177 (394)
T ss_pred             HHHcCCCCCCcceeechhhh
Confidence            77888888899999888753

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.38  E-value=7.2e-12  Score=105.84  Aligned_cols=105  Identities=25%  Similarity=0.300  Sum_probs=69.6

Q ss_pred             CChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe----------------cCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           28 AGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----------------SNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        28 ~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      ++||||+.+|++  +++.........+.++......+.                +...+.+|||||++.+..+....++.
T Consensus       472 ~~KTtLLD~iR~--t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~  549 (1049)
T PRK14845        472 VHNTTLLDKIRK--TRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSL  549 (1049)
T ss_pred             cccccHHHHHhC--CCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhccc
Confidence            349999999987  555544444444444443332221                11238999999999998888888889


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      +|++++|+|+++.-.-+ ....+..+..    .+.|+++++||+|+.+
T Consensus       550 aDivlLVVDa~~Gi~~q-T~e~I~~lk~----~~iPiIVViNKiDL~~  592 (1049)
T PRK14845        550 ADLAVLVVDINEGFKPQ-TIEAINILRQ----YKTPFVVAANKIDLIP  592 (1049)
T ss_pred             CCEEEEEEECcccCCHh-HHHHHHHHHH----cCCCEEEEEECCCCcc
Confidence            99999999998632211 1222222222    3579999999999964

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.37  E-value=2.3e-11  Score=92.38  Aligned_cols=81  Identities=27%  Similarity=0.454  Sum_probs=53.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC-----------------eEEEEEEcCCCC-
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGGQP-   79 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~D~~G~~-   79 (170)
                      ++|+++|.|++|||||+|++.+......+....+..|..+.    +.+.+                 ..+.++|+||-. 
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~----~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~   78 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGV----VPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVK   78 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEE----EEeccccchhhHHhcCCccccCceEEEEECCCCCC
Confidence            68999999999999999999874433333333333333322    22222                 359999999922 


Q ss_pred             ------cchhhHHHHhhccCEEEEEEeCC
Q 030848           80 ------GLRSIWEKYYEEAHAVVFVIDAA  102 (170)
Q Consensus        80 ------~~~~~~~~~~~~~~~~i~v~d~~  102 (170)
                            .+...+...++++|++++|+|+.
T Consensus        79 ~a~~g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         79 GASKGEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             CCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence                  12234445578999999999984

>PRK13768 GTPase; Provisional

Probab=99.37  E-value=6.2e-12  Score=92.02  Aligned_cols=83  Identities=25%  Similarity=0.263  Sum_probs=50.9

Q ss_pred             eEEEEEEcCCCCcch---hhHHHHh---hc--cCEEEEEEeCCCcccHHHHHH-HHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848           68 SKLVFWDLGGQPGLR---SIWEKYY---EE--AHAVVFVIDAACPSRFEDSKT-ALEKVLRNEDLQGAPLLILANKQDLP  138 (170)
Q Consensus        68 ~~~~i~D~~G~~~~~---~~~~~~~---~~--~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~ii~v~nK~D~~  138 (170)
                      ..+.+||+||+.+..   ..+..+.   ..  ++++++|+|++.......... ++....... ..+.|+++++||+|+.
T Consensus        97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~  175 (253)
T PRK13768         97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLL  175 (253)
T ss_pred             CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhc
Confidence            369999999976643   2332232   22  789999999976544332222 211211111 1478999999999998


Q ss_pred             ccCCHHHHHhHhC
Q 030848          139 DAVSADELARYLD  151 (170)
Q Consensus       139 ~~~~~~~~~~~~~  151 (170)
                      +....++..+.+.
T Consensus       176 ~~~~~~~~~~~l~  188 (253)
T PRK13768        176 SEEELERILKWLE  188 (253)
T ss_pred             CchhHHHHHHHHh
Confidence            7666555555444

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=2.6e-12  Score=100.67  Aligned_cols=157  Identities=21%  Similarity=0.251  Sum_probs=101.0

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCC--------------C-----------CCcccC--CcceeEEEEE
Q 030848           12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL--------------P-----------PDRIVP--TVGLNIGRIE   64 (170)
Q Consensus        12 ~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~--------------~-----------~~~~~~--~~~~~~~~~~   64 (170)
                      ...+..+.++++|+..+|||||+-+++....++...              .           .++...  |.......++
T Consensus       172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe  251 (603)
T KOG0458|consen  172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE  251 (603)
T ss_pred             cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence            344577899999999999999998884432222211              1           111111  2222222344


Q ss_pred             ecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCccc---HH--HHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           65 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR---FE--DSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        65 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~--~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      -....++|+|.||+..|..-.......+|+.++|+|++-...   |+  .-..-+..+++.++  -..++|++||+|+.+
T Consensus       252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~  329 (603)
T KOG0458|consen  252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVS  329 (603)
T ss_pred             cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccC
Confidence            456679999999988887766666788999999999974321   11  11111223333333  456899999999986


Q ss_pred             --cCCHHHHHhHhC-----ccccccceeEEEeeeccCC
Q 030848          140 --AVSADELARYLD-----LKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       140 --~~~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~g  170 (170)
                        +.-.+++...+.     ..++.+..+.|+|||+.+|
T Consensus       330 Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~G  367 (603)
T KOG0458|consen  330 WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSG  367 (603)
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccC
Confidence              444555555444     4556677789999999987

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.35  E-value=1.3e-11  Score=91.39  Aligned_cols=129  Identities=17%  Similarity=0.268  Sum_probs=69.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCC----CCCcccCCcceeEEEEEe----cCeEEEEEEcCCC-Ccc------
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGL----PPDRIVPTVGLNIGRIEV----SNSKLVFWDLGGQ-PGL------   81 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~----~~~~~~i~D~~G~-~~~------   81 (170)
                      .++|+|+|.+|+|||||+|.|.+..-.....    .......+..+.......    ...++.++||||- +..      
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            5899999999999999999997632211110    011122333333332222    2357999999991 111      


Q ss_pred             -------hhhHHHHh-------------hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC
Q 030848           82 -------RSIWEKYY-------------EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV  141 (170)
Q Consensus        82 -------~~~~~~~~-------------~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~  141 (170)
                             ...+..++             .+.|++||+++++...--..-.+.+..+ .    ..+++|-|+.|+|...+.
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~L-s----~~vNvIPvIaKaD~lt~~  158 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRL-S----KRVNVIPVIAKADTLTPE  158 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHH-T----TTSEEEEEESTGGGS-HH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHh-c----ccccEEeEEecccccCHH
Confidence                   11111121             2489999999987543222222333344 2    467899999999987654


Q ss_pred             CHHHHHhHh
Q 030848          142 SADELARYL  150 (170)
Q Consensus       142 ~~~~~~~~~  150 (170)
                      ......+.+
T Consensus       159 el~~~k~~i  167 (281)
T PF00735_consen  159 ELQAFKQRI  167 (281)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444333

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.35  E-value=1.3e-11  Score=92.85  Aligned_cols=87  Identities=26%  Similarity=0.507  Sum_probs=76.1

Q ss_pred             cCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCC----------cccHHHHHHHHHHHHcCCC
Q 030848           53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALEKVLRNED  122 (170)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~  122 (170)
                      .+|.++....+..++.++.++|++||..-+.-|..++.+++++|+|++++.          .....+....+..+.+..+
T Consensus       180 ~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~  259 (354)
T KOG0082|consen  180 VPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW  259 (354)
T ss_pred             cCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence            368888888999999999999999999989999999999999999998863          1234567788999999999


Q ss_pred             CCCCcEEEEeeCCCccc
Q 030848          123 LQGAPLLILANKQDLPD  139 (170)
Q Consensus       123 ~~~~~ii~v~nK~D~~~  139 (170)
                      ..+.++++++||.|+..
T Consensus       260 F~~tsiiLFLNK~DLFe  276 (354)
T KOG0082|consen  260 FANTSIILFLNKKDLFE  276 (354)
T ss_pred             cccCcEEEEeecHHHHH
Confidence            89999999999999843

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.33  E-value=2.6e-12  Score=90.46  Aligned_cols=123  Identities=20%  Similarity=0.315  Sum_probs=82.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC-eEEEEEEcCCCCcchh-----hHHHHhhc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRS-----IWEKYYEE   91 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~~~~-----~~~~~~~~   91 (170)
                      -||+++|.+||||||+=..+.....   .........|+++...++...+ .-+.+||.+|++.+..     .....++.
T Consensus         5 kKvlLMGrsGsGKsSmrsiiF~ny~---a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~n   81 (295)
T KOG3886|consen    5 KKVLLMGRSGSGKSSMRSIIFANYI---ARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRN   81 (295)
T ss_pred             ceEEEeccCCCCccccchhhhhhhh---hhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhhee
Confidence            4799999999999999766653111   1112233456666555554443 6799999999985532     33456789


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHH---HHHcCCCCCCCcEEEEeeCCCccccCCHHH
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALE---KVLRNEDLQGAPLLILANKQDLPDAVSADE  145 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~  145 (170)
                      .+++++|||++..+...+......   .+...  .+...+++.++|+|+......++
T Consensus        82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~d~r~~  136 (295)
T KOG3886|consen   82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQEDAREL  136 (295)
T ss_pred             heeeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhcccchHHH
Confidence            999999999997765444443333   33332  26788999999999987554443

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.32  E-value=8.8e-12  Score=93.96  Aligned_cols=145  Identities=17%  Similarity=0.147  Sum_probs=81.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCC------CCCCCcc----------------cCCcceeEEE---------
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE------GLPPDRI----------------VPTVGLNIGR---------   62 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~------~~~~~~~----------------~~~~~~~~~~---------   62 (170)
                      ..+...|.++|++|+|||||++.+........      ...+...                ...-......         
T Consensus        53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~  132 (332)
T PRK09435         53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG  132 (332)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence            45678999999999999999998844322110      0011000                0000000100         


Q ss_pred             -----------EEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEE
Q 030848           63 -----------IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL  131 (170)
Q Consensus        63 -----------~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v  131 (170)
                                 .+..+..+.++||+|...-...   ....+|.++++.++.....++....   .++..      .-++|
T Consensus       133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E~------aDIiV  200 (332)
T PRK09435        133 VARKTRETMLLCEAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIMEL------ADLIV  200 (332)
T ss_pred             hHHHHHHHHHHHhccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhhh------hheEE
Confidence                       1123568999999995532222   3567999999986554444433322   12222      13899


Q ss_pred             eeCCCccccCCHH----HHHhHhCccc--cccceeEEEeeeccCC
Q 030848          132 ANKQDLPDAVSAD----ELARYLDLKK--LDERVCMFEAVSGYDG  170 (170)
Q Consensus       132 ~nK~D~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~Sa~~g  170 (170)
                      +||+|+......+    ++.+.+....  ...+..|++.+||++|
T Consensus       201 VNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g  245 (332)
T PRK09435        201 INKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEG  245 (332)
T ss_pred             eehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCC
Confidence            9999997644333    3333333211  1123468999999986

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.31  E-value=5.6e-11  Score=95.45  Aligned_cols=121  Identities=13%  Similarity=0.064  Sum_probs=72.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcc----------hhhHH
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL----------RSIWE   86 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~~~~   86 (170)
                      .++|+++|.+|+||||++|.|.+..  .... ......|+..........+..+.++||||-...          .....
T Consensus       118 slrIvLVGKTGVGKSSLINSILGek--vf~v-ss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik  194 (763)
T TIGR00993       118 SLNILVLGKSGVGKSATINSIFGEV--KFST-DAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVK  194 (763)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhccc--cccc-cCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHH
Confidence            4689999999999999999998731  1111 111122333322233456788999999993321          11222


Q ss_pred             HHhh--ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCC-CCCcEEEEeeCCCcccc
Q 030848           87 KYYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL-QGAPLLILANKQDLPDA  140 (170)
Q Consensus        87 ~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~ii~v~nK~D~~~~  140 (170)
                      .++.  .+|++|+|..++......+....+..+...++. -...+||++|+.|..++
T Consensus       195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp  251 (763)
T TIGR00993       195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP  251 (763)
T ss_pred             HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence            3444  479999998876443322333444444333331 12568999999998763

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.30  E-value=9.9e-12  Score=89.49  Aligned_cols=151  Identities=21%  Similarity=0.261  Sum_probs=88.9

Q ss_pred             hhHHHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCC------CCCCcc----------------cCCcceeEE
Q 030848            4 LFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG------LPPDRI----------------VPTVGLNIG   61 (170)
Q Consensus         4 ~~~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~------~~~~~~----------------~~~~~~~~~   61 (170)
                      ++.+++++  ..+..+|.+.|+||+|||||++.+.........      ..+.+.                ...-+..+.
T Consensus        18 ll~~l~~~--~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIR   95 (266)
T PF03308_consen   18 LLKRLYPH--TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIR   95 (266)
T ss_dssp             HHHHHGGG--TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEE
T ss_pred             HHHHHHhh--cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEe
Confidence            45666655  456789999999999999999999432221100      001100                011122222


Q ss_pred             EEE--------------------ecCeEEEEEEcCC--CCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHc
Q 030848           62 RIE--------------------VSNSKLVFWDLGG--QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR  119 (170)
Q Consensus        62 ~~~--------------------~~~~~~~i~D~~G--~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~  119 (170)
                      ...                    ..+..+.|+.|.|  |.+..     ...-+|.+++|..+...+..+..+..+.++..
T Consensus        96 S~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~-----I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD  170 (266)
T PF03308_consen   96 SMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVD-----IADMADTVVLVLVPGLGDEIQAIKAGIMEIAD  170 (266)
T ss_dssp             EE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHH-----HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S
T ss_pred             ecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHH-----HHHhcCeEEEEecCCCccHHHHHhhhhhhhcc
Confidence            211                    1256899999998  33332     23778999999999888888877777777733


Q ss_pred             CCCCCCCcEEEEeeCCCccccC-CHHHHHhHhCcc--ccccceeEEEeeeccCC
Q 030848          120 NEDLQGAPLLILANKQDLPDAV-SADELARYLDLK--KLDERVCMFEAVSGYDG  170 (170)
Q Consensus       120 ~~~~~~~~ii~v~nK~D~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~g  170 (170)
                               ++|+||+|.+... ...++...+...  ....+.+|++.+||.+|
T Consensus       171 ---------i~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~  215 (266)
T PF03308_consen  171 ---------IFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEG  215 (266)
T ss_dssp             ---------EEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTT
T ss_pred             ---------EEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCC
Confidence                     9999999977633 344445444422  23456789999999875

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=4.4e-11  Score=88.95  Aligned_cols=149  Identities=19%  Similarity=0.181  Sum_probs=95.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccC-CCC--CCCcccCCcceeEEEEEe---------cCeEEEEEEcCCCCcch
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNV-EGL--PPDRIVPTVGLNIGRIEV---------SNSKLVFWDLGGQPGLR   82 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~---------~~~~~~i~D~~G~~~~~   82 (170)
                      ..++++.+.|+..||||||..++....+-. .+.  .+.+...|.++.+..+..         +..++.++|+||+..+-
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI   84 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI   84 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence            356899999999999999999995432211 111  122233344444443322         34678999999999988


Q ss_pred             hhHHHHhhccCEEEEEEeCCCcccHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCccccCCH----HHHHhHhC----cc
Q 030848           83 SIWEKYYEEAHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPDAVSA----DELARYLD----LK  153 (170)
Q Consensus        83 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~----~~~~~~~~----~~  153 (170)
                      +.........|..++|+|+....--+.+ -..+.++..      ...++|+||+|..++..+    ++....++    ..
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c------~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t  158 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC------KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST  158 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc------cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence            8777777889999999999754322222 122223322      347889999998775433    33333333    22


Q ss_pred             ccccceeEEEeeeccCC
Q 030848          154 KLDERVCMFEAVSGYDG  170 (170)
Q Consensus       154 ~~~~~~~~~~~~Sa~~g  170 (170)
                      . ...+.|++++||+.|
T Consensus       159 ~-f~g~~PI~~vsa~~G  174 (522)
T KOG0461|consen  159 G-FDGNSPIVEVSAADG  174 (522)
T ss_pred             C-cCCCCceeEEecCCC
Confidence            2 345689999999876

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=3e-11  Score=98.69  Aligned_cols=132  Identities=20%  Similarity=0.163  Sum_probs=91.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCC--CCC------C------cccCCcceeEEEEEecC-eEEEEEEcCCCC
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG--LPP------D------RIVPTVGLNIGRIEVSN-SKLVFWDLGGQP   79 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~--~~~------~------~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~   79 (170)
                      ....+|.++|+.++||||+..+++.....+..  ...      +      ...-|+......+.+++ ..++++||||+-
T Consensus         8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV   87 (697)
T COG0480           8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV   87 (697)
T ss_pred             ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence            35568999999999999999999543222111  111      0      11123333344566774 999999999999


Q ss_pred             cchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc---CCHHHHHhHhC
Q 030848           80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA---VSADELARYLD  151 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~---~~~~~~~~~~~  151 (170)
                      +|.....+.++-+|++++|+|+...-..+. ...|.+...    .+.|.++++||+|....   ...+++.+.+.
T Consensus        88 DFt~EV~rslrvlDgavvVvdaveGV~~QT-Etv~rqa~~----~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~  157 (697)
T COG0480          88 DFTIEVERSLRVLDGAVVVVDAVEGVEPQT-ETVWRQADK----YGVPRILFVNKMDRLGADFYLVVEQLKERLG  157 (697)
T ss_pred             ccHHHHHHHHHhhcceEEEEECCCCeeecH-HHHHHHHhh----cCCCeEEEEECccccccChhhhHHHHHHHhC
Confidence            999999999999999999999986533332 233333333    58899999999998763   45556666665

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.28  E-value=1.9e-10  Score=87.98  Aligned_cols=121  Identities=21%  Similarity=0.264  Sum_probs=71.3

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhh--cccC-----------------CCCCCCc----ccCCcceeEEEEEecCeE
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSV--YSNV-----------------EGLPPDR----IVPTVGLNIGRIEVSNSK   69 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~--~~~~-----------------~~~~~~~----~~~~~~~~~~~~~~~~~~   69 (170)
                      ++..++-|.++|+.++|||||+|++.+.  -++.                 .+.+..+    +-|.-+......+.-..+
T Consensus        13 RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~   92 (492)
T TIGR02836        13 RTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFK   92 (492)
T ss_pred             HhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCccc
Confidence            3557899999999999999999999664  1111                 1111111    112223332233334578


Q ss_pred             EEEEEcCCC--------Ccchh----------------------hHHHHhhccCEEEEEE-eCC----CcccH-HHHHHH
Q 030848           70 LVFWDLGGQ--------PGLRS----------------------IWEKYYEEAHAVVFVI-DAA----CPSRF-EDSKTA  113 (170)
Q Consensus        70 ~~i~D~~G~--------~~~~~----------------------~~~~~~~~~~~~i~v~-d~~----~~~~~-~~~~~~  113 (170)
                      +.++||+|-        .+...                      +..-.-..++..|+|. |.+    ..+.+ +.-..+
T Consensus        93 VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~  172 (492)
T TIGR02836        93 VRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERV  172 (492)
T ss_pred             EEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHH
Confidence            999999991        11111                      2222223789888888 663    11122 333444


Q ss_pred             HHHHHcCCCCCCCcEEEEeeCCCc
Q 030848          114 LEKVLRNEDLQGAPLLILANKQDL  137 (170)
Q Consensus       114 ~~~~~~~~~~~~~~ii~v~nK~D~  137 (170)
                      +.++..    .+.|+++++||.|-
T Consensus       173 i~eLk~----~~kPfiivlN~~dp  192 (492)
T TIGR02836       173 IEELKE----LNKPFIILLNSTHP  192 (492)
T ss_pred             HHHHHh----cCCCEEEEEECcCC
Confidence            445443    58999999999993

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.26  E-value=8.1e-11  Score=91.06  Aligned_cols=85  Identities=22%  Similarity=0.346  Sum_probs=57.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE--------------------ecCeEEEEEEcCC
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE--------------------VSNSKLVFWDLGG   77 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~i~D~~G   77 (170)
                      ++|+++|.+++|||||+|++.+.........+.+..|+.+.......                    .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999874443333344444555554322100                    1235689999999


Q ss_pred             C----Cc---chhhHHHHhhccCEEEEEEeCC
Q 030848           78 Q----PG---LRSIWEKYYEEAHAVVFVIDAA  102 (170)
Q Consensus        78 ~----~~---~~~~~~~~~~~~~~~i~v~d~~  102 (170)
                      -    ..   +...+...++.+|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            3    22   2223444489999999999997

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=1.7e-10  Score=86.83  Aligned_cols=86  Identities=23%  Similarity=0.391  Sum_probs=66.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEE----------E----ecCeEEEEEEcCC-----
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI----------E----VSNSKLVFWDLGG-----   77 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~----~~~~~~~i~D~~G-----   77 (170)
                      .+++.+||-|++|||||+|++.....+..++++.+..|+.+......          .    .....+.++|.+|     
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            47899999999999999999987665566777777777776654321          0    1134699999999     


Q ss_pred             --CCcchhhHHHHhhccCEEEEEEeCC
Q 030848           78 --QPGLRSIWEKYYEEAHAVVFVIDAA  102 (170)
Q Consensus        78 --~~~~~~~~~~~~~~~~~~i~v~d~~  102 (170)
                        .+.+...+...+|++|+++.|++..
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence              5667777888889999999999875

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.20  E-value=2.6e-10  Score=85.44  Aligned_cols=131  Identities=18%  Similarity=0.310  Sum_probs=79.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhh--cccC--CCCCCCcccCCcceeEEEEEec----CeEEEEEEcCCC-C------
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSV--YSNV--EGLPPDRIVPTVGLNIGRIEVS----NSKLVFWDLGGQ-P------   79 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~D~~G~-~------   79 (170)
                      --.++|.++|+.|+|||||+|.+.+.  ....  .+.......+++.+......+.    ..++.++||||- +      
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            45689999999999999999999763  1111  1111222445666655544432    357999999991 1      


Q ss_pred             -------cchhhHHHHhh--------------ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848           80 -------GLRSIWEKYYE--------------EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP  138 (170)
Q Consensus        80 -------~~~~~~~~~~~--------------~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~  138 (170)
                             .+...+..|+.              ++|++||.+.++...--.--...+.++.     ..+.+|-|+.|+|..
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls-----~~vNlIPVI~KaD~l  175 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLS-----KRVNLIPVIAKADTL  175 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHh-----cccCeeeeeeccccC
Confidence                   11222233331              4899999998774332222233334442     356799999999987


Q ss_pred             ccCCHHHHHhHh
Q 030848          139 DAVSADELARYL  150 (170)
Q Consensus       139 ~~~~~~~~~~~~  150 (170)
                      ....+.+..+.+
T Consensus       176 T~~El~~~K~~I  187 (373)
T COG5019         176 TDDELAEFKERI  187 (373)
T ss_pred             CHHHHHHHHHHH
Confidence            655444444333

>smart00053 DYNc Dynamin, GTPase

Probab=99.19  E-value=3.2e-10  Score=82.01  Aligned_cols=78  Identities=21%  Similarity=0.249  Sum_probs=48.3

Q ss_pred             eEEEEEEcCCCCc-------------chhhHHHHhhc-cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 030848           68 SKLVFWDLGGQPG-------------LRSIWEKYYEE-AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN  133 (170)
Q Consensus        68 ~~~~i~D~~G~~~-------------~~~~~~~~~~~-~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~n  133 (170)
                      ..+.++||||-..             ...+...|+++ .+.+++|+|++..-.-+........+    .....|+++|+|
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l----d~~~~rti~ViT  200 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV----DPQGERTIGVIT  200 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH----HHcCCcEEEEEE
Confidence            4799999999421             22345567774 45888999887543322322333222    225789999999


Q ss_pred             CCCccccCCHHHHHhHhC
Q 030848          134 KQDLPDAVSADELARYLD  151 (170)
Q Consensus       134 K~D~~~~~~~~~~~~~~~  151 (170)
                      |.|..++...  ....++
T Consensus       201 K~D~~~~~~~--~~~~~~  216 (240)
T smart00053      201 KLDLMDEGTD--ARDILE  216 (240)
T ss_pred             CCCCCCccHH--HHHHHh
Confidence            9999864432  444444

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.18  E-value=5e-11  Score=77.57  Aligned_cols=90  Identities=18%  Similarity=0.165  Sum_probs=61.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCccc-CCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEE
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV-PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVV   96 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   96 (170)
                      +|++++|..|+|||+++.++..      ........ ++.+                       +......+.+..+.++
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~------~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~   51 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQ------FPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVL   51 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhc------CCccccCceehhh-----------------------hhhccccccCCCCEEE
Confidence            4899999999999999999954      22221111 2222                       2223344567789999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           97 FVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        97 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      +|++.++..+++..  |...+... ...+.|.++++||.|+..
T Consensus        52 ~v~~~~~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~   91 (124)
T smart00010       52 QCWRVDDRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEE   91 (124)
T ss_pred             EEEEccCHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHh
Confidence            99999998887655  55444433 235688999999999843

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.18  E-value=1.1e-10  Score=74.75  Aligned_cols=123  Identities=19%  Similarity=0.179  Sum_probs=80.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC----CCcchhhHHHHhhccCE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----QPGLRSIWEKYYEEAHA   94 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----~~~~~~~~~~~~~~~~~   94 (170)
                      |+.+||..|.|||||++.+.+.        ...+..|..+.+...       -.+||||    +............++|+
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~--------~~lykKTQAve~~d~-------~~IDTPGEy~~~~~~Y~aL~tt~~dadv   67 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGN--------DTLYKKTQAVEFNDK-------GDIDTPGEYFEHPRWYHALITTLQDADV   67 (148)
T ss_pred             eeEEecccccCchhHHHHhhcc--------hhhhcccceeeccCc-------cccCCchhhhhhhHHHHHHHHHhhccce
Confidence            7899999999999999999761        112233433332111       1469999    34444445555689999


Q ss_pred             EEEEEeCCCcccH-HHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           95 VVFVIDAACPSRF-EDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        95 ~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +++|-.++++.+- ..      -+   ......|+|=+++|.|+.+..+.....+.+...+.    -+++++|+..
T Consensus        68 i~~v~~and~~s~f~p------~f---~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa----~~IF~~s~~d  130 (148)
T COG4917          68 IIYVHAANDPESRFPP------GF---LDIGVKKVIGVVTKADLAEDADISLVKRWLREAGA----EPIFETSAVD  130 (148)
T ss_pred             eeeeecccCccccCCc------cc---ccccccceEEEEecccccchHhHHHHHHHHHHcCC----cceEEEeccC
Confidence            9999999987542 11      11   11134568999999999876666666666654443    3688888865

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=1.1e-10  Score=86.55  Aligned_cols=152  Identities=18%  Similarity=0.167  Sum_probs=105.0

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCC----------CCCCcccCCcceeEEEEEe--cCeEEEEEEcCCCCc
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG----------LPPDRIVPTVGLNIGRIEV--SNSKLVFWDLGGQPG   80 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~G~~~   80 (170)
                      +.++.++|.-+|+...|||||..+|.........          ..+++...-+.++.-++.+  ....+.=.|+||+..
T Consensus        50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD  129 (449)
T KOG0460|consen   50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD  129 (449)
T ss_pred             cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence            3578899999999999999999888443222221          2222333344444444444  456788889999998


Q ss_pred             chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cC----CHHHHHhHhCcccc
Q 030848           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AV----SADELARYLDLKKL  155 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~----~~~~~~~~~~~~~~  155 (170)
                      +..-........|+.|+|+.++|...-+. ++.+.-. .+.+  -..+++++||.|+.+ ++    -.-|+++.+...++
T Consensus       130 YIKNMItGaaqMDGaILVVaatDG~MPQT-rEHlLLA-rQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf  205 (449)
T KOG0460|consen  130 YIKNMITGAAQMDGAILVVAATDGPMPQT-REHLLLA-RQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGF  205 (449)
T ss_pred             HHHHhhcCccccCceEEEEEcCCCCCcch-HHHHHHH-HHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCC
Confidence            87766666688899999999998765432 2222111 2222  356899999999984 32    34477788888999


Q ss_pred             ccceeEEEeeecc
Q 030848          156 DERVCMFEAVSGY  168 (170)
Q Consensus       156 ~~~~~~~~~~Sa~  168 (170)
                      +...+|++.-||.
T Consensus       206 ~Gd~~PvI~GSAL  218 (449)
T KOG0460|consen  206 DGDNTPVIRGSAL  218 (449)
T ss_pred             CCCCCCeeecchh
Confidence            9999999998885

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.17  E-value=1.4e-10  Score=89.95  Aligned_cols=85  Identities=27%  Similarity=0.481  Sum_probs=72.2

Q ss_pred             CCcceeEEEEEe-cCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCC----------cccHHHHHHHHHHHHcCCC
Q 030848           54 PTVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALEKVLRNED  122 (170)
Q Consensus        54 ~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~  122 (170)
                      +|.++....+.. .+..+.++|++|+..-+.-|..++.+++++|+|+++++          ...+.+....+..+.+...
T Consensus       221 ~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~  300 (389)
T PF00503_consen  221 KTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPW  300 (389)
T ss_dssp             --SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGG
T ss_pred             CCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcc
Confidence            377777778888 88999999999999999999999999999999998752          2347788899999999888


Q ss_pred             CCCCcEEEEeeCCCcc
Q 030848          123 LQGAPLLILANKQDLP  138 (170)
Q Consensus       123 ~~~~~ii~v~nK~D~~  138 (170)
                      ..+.|+++++||.|+.
T Consensus       301 ~~~~~iil~lnK~D~f  316 (389)
T PF00503_consen  301 FKNTPIILFLNKIDLF  316 (389)
T ss_dssp             GTTSEEEEEEE-HHHH
T ss_pred             cccCceEEeeecHHHH
Confidence            8899999999999974

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.15  E-value=2.8e-10  Score=86.96  Aligned_cols=132  Identities=22%  Similarity=0.214  Sum_probs=89.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhccc------CCCCCCC------------cccCCcceeEEEEEecCeEEEEEEcCCCC
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSN------VEGLPPD------------RIVPTVGLNIGRIEVSNSKLVFWDLGGQP   79 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~------~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   79 (170)
                      -...||-+|.+|||||...++.....      +.+....            ...-.+......+++.+..+++.||||++
T Consensus        13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe   92 (528)
T COG4108          13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE   92 (528)
T ss_pred             cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence            45789999999999999988321111      1111111            11123334455788899999999999999


Q ss_pred             cchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC---HHHHHhHhCccc
Q 030848           80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLDLKK  154 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~---~~~~~~~~~~~~  154 (170)
                      .+.+-.-+-+--+|.++.|+|+...-. ....+.+    ..+...+.||+=++||.|-....+   ++|+++.+....
T Consensus        93 DFSEDTYRtLtAvDsAvMVIDaAKGiE-~qT~KLf----eVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~  165 (528)
T COG4108          93 DFSEDTYRTLTAVDSAVMVIDAAKGIE-PQTLKLF----EVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQC  165 (528)
T ss_pred             ccchhHHHHHHhhheeeEEEecccCcc-HHHHHHH----HHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcce
Confidence            998777777788999999999886532 2223333    333347899999999999877554   556666666333

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.15  E-value=6.2e-10  Score=83.93  Aligned_cols=124  Identities=19%  Similarity=0.301  Sum_probs=72.7

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhh--ccc-CCCCCCCcccCCcceeEEEEEec----CeEEEEEEcCCC----------
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSV--YSN-VEGLPPDRIVPTVGLNIGRIEVS----NSKLVFWDLGGQ----------   78 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~D~~G~----------   78 (170)
                      -.+.+.++|++|.|||||+|.|...  ..+ ...........+..+........    ..+++++||||-          
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w   99 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW   99 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence            4589999999999999999999763  111 00011112222444444444433    357999999991          


Q ss_pred             ----CcchhhHHHHhh-------------ccCEEEEEEeCCCcccHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030848           79 ----PGLRSIWEKYYE-------------EAHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPDA  140 (170)
Q Consensus        79 ----~~~~~~~~~~~~-------------~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~  140 (170)
                          ..+.+.+..|+.             ++|++||.+.++... +..+ ...+..+ .    ..+++|-|+.|+|...+
T Consensus       100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l-~----~~vNiIPVI~KaD~lT~  173 (366)
T KOG2655|consen  100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKL-S----KKVNLIPVIAKADTLTK  173 (366)
T ss_pred             hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHH-h----ccccccceeeccccCCH
Confidence                111223333331             589999999876432 2222 2222222 1    46789999999998764


Q ss_pred             CCHHH
Q 030848          141 VSADE  145 (170)
Q Consensus       141 ~~~~~  145 (170)
                      .....
T Consensus       174 ~El~~  178 (366)
T KOG2655|consen  174 DELNQ  178 (366)
T ss_pred             HHHHH
Confidence            44333

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.12  E-value=2.3e-10  Score=82.77  Aligned_cols=70  Identities=26%  Similarity=0.352  Sum_probs=44.9

Q ss_pred             eEEEEEEcCCCCcchh-------hHHHHh-hccCEEEEEEeC---CCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 030848           68 SKLVFWDLGGQPGLRS-------IWEKYY-EEAHAVVFVIDA---ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD  136 (170)
Q Consensus        68 ~~~~i~D~~G~~~~~~-------~~~~~~-~~~~~~i~v~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D  136 (170)
                      ..+.++|||||-+...       ....+. .-.-+++|++|.   +++.+|-.-..+...++..   .+.|.+++.||+|
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~D  192 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKTD  192 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEeccc
Confidence            3689999999765311       112221 123577888886   3555665444444455443   5889999999999


Q ss_pred             cccc
Q 030848          137 LPDA  140 (170)
Q Consensus       137 ~~~~  140 (170)
                      +.+.
T Consensus       193 v~d~  196 (366)
T KOG1532|consen  193 VSDS  196 (366)
T ss_pred             cccc
Confidence            9874

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.12  E-value=1.5e-09  Score=81.44  Aligned_cols=92  Identities=14%  Similarity=0.057  Sum_probs=52.5

Q ss_pred             CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHH
Q 030848           67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADEL  146 (170)
Q Consensus        67 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~  146 (170)
                      +..+.|+||+|--...   ...+..+|.++++......   .++......+      .+.|.++++||+|+.+.......
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~  193 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL------MEIADIYVVNKADGEGATNVTIA  193 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH------hhhccEEEEEcccccchhHHHHH
Confidence            5789999999943211   1245677888888644332   3333332222      24567999999999865433221


Q ss_pred             HhHh----Cc--cccccceeEEEeeeccCC
Q 030848          147 ARYL----DL--KKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       147 ~~~~----~~--~~~~~~~~~~~~~Sa~~g  170 (170)
                      ...+    ..  ........+++++||++|
T Consensus       194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g  223 (300)
T TIGR00750       194 RLMLALALEEIRRREDGWRPPVLTTSAVEG  223 (300)
T ss_pred             HHHHHHHHhhccccccCCCCCEEEEEccCC
Confidence            2111    10  111123356999999886

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=7.4e-10  Score=84.75  Aligned_cols=146  Identities=17%  Similarity=0.082  Sum_probs=100.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV   98 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   98 (170)
                      -|...|+-..|||||+..+.+...+... .......|+++.++.....+..+.++|.||++++.......+...|.+++|
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~-EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLv   80 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLP-EEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLV   80 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccch-hhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEE
Confidence            4678899999999999999764333331 222445678888888888888999999999999988777777889999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           99 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        99 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +|+++.-..+ ..+.+ .++...  .-...++++||+|..++...++..+.+.... .....+++++|+++|
T Consensus        81 V~~deGl~~q-tgEhL-~iLdll--gi~~giivltk~D~~d~~r~e~~i~~Il~~l-~l~~~~i~~~s~~~g  147 (447)
T COG3276          81 VAADEGLMAQ-TGEHL-LILDLL--GIKNGIIVLTKADRVDEARIEQKIKQILADL-SLANAKIFKTSAKTG  147 (447)
T ss_pred             EeCccCcchh-hHHHH-HHHHhc--CCCceEEEEeccccccHHHHHHHHHHHHhhc-ccccccccccccccC
Confidence            9997543222 11111 222222  2345799999999987554444443333111 156677899999876

>cd01900 YchF YchF subfamily

Probab=99.09  E-value=4.6e-10  Score=82.69  Aligned_cols=79  Identities=27%  Similarity=0.434  Sum_probs=51.2

Q ss_pred             EEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC-----------------eEEEEEEcCCCC---
Q 030848           20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGGQP---   79 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~D~~G~~---   79 (170)
                      ++++|.|++|||||+|++.+......+....+..+..+    .+.+.+                 ..+.++|+||-.   
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g----~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a   76 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVG----IVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGA   76 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceee----eEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCC
Confidence            57999999999999999987443333232322233322    233322                 259999999922   


Q ss_pred             ----cchhhHHHHhhccCEEEEEEeCC
Q 030848           80 ----GLRSIWEKYYEEAHAVVFVIDAA  102 (170)
Q Consensus        80 ----~~~~~~~~~~~~~~~~i~v~d~~  102 (170)
                          .+...+...++++|++++|+|..
T Consensus        77 ~~~~glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          77 SKGEGLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             chhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence                22334445568899999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.06  E-value=1.4e-09  Score=77.33  Aligned_cols=131  Identities=17%  Similarity=0.239  Sum_probs=75.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhc-ccCC--CCCCCcccCCcceeEEEEEe--cC--eEEEEEEcCC---CCcchhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVY-SNVE--GLPPDRIVPTVGLNIGRIEV--SN--SKLVFWDLGG---QPGLRSI   84 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~--~~--~~~~i~D~~G---~~~~~~~   84 (170)
                      .=.++|.|||.+|.||||++|.+.... .+..  .........|+.+......+  ++  .++.++||||   +-+-..+
T Consensus        44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc  123 (336)
T KOG1547|consen   44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC  123 (336)
T ss_pred             cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence            356899999999999999999996521 1111  11122334455554433322  23  4689999999   1111112


Q ss_pred             -----------HHHHhh--------------ccCEEEEEEeCCCcccHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848           85 -----------WEKYYE--------------EAHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLP  138 (170)
Q Consensus        85 -----------~~~~~~--------------~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~v~nK~D~~  138 (170)
                                 ...|++              ++|+++|.+.++. .++..+ .+.++.+.     .-..++-|+-|+|..
T Consensus       124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt-----~vvNvvPVIakaDtl  197 (336)
T KOG1547|consen  124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLT-----EVVNVVPVIAKADTL  197 (336)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHh-----hhheeeeeEeecccc
Confidence                       222222              3778888887763 333322 12222222     235689999999987


Q ss_pred             ccCCHHHHHhHhC
Q 030848          139 DAVSADELARYLD  151 (170)
Q Consensus       139 ~~~~~~~~~~~~~  151 (170)
                      .-+.+.+..+.++
T Consensus       198 TleEr~~FkqrI~  210 (336)
T KOG1547|consen  198 TLEERSAFKQRIR  210 (336)
T ss_pred             cHHHHHHHHHHHH
Confidence            6666666666555

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=1.8e-09  Score=86.33  Aligned_cols=117  Identities=18%  Similarity=0.165  Sum_probs=77.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCC-------CCCcc--cCCcceeEE----EE-----EecCeEEEEEEcCCC
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGL-------PPDRI--VPTVGLNIG----RI-----EVSNSKLVFWDLGGQ   78 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~-------~~~~~--~~~~~~~~~----~~-----~~~~~~~~i~D~~G~   78 (170)
                      ..++.++|+-++|||+|+..+..........       +.+..  ...-++.++    .+     ..+..-+++.||||+
T Consensus       128 irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGH  207 (971)
T KOG0468|consen  128 IRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGH  207 (971)
T ss_pred             EEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCc
Confidence            3578999999999999999996532211110       11100  001111111    11     122345999999999


Q ss_pred             CcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848           79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP  138 (170)
Q Consensus        79 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~  138 (170)
                      .++.......++.+|++++|+|+...=++...+..-+.+     ..+.|+++|+||+|..
T Consensus       208 VnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhai-----q~~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  208 VNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAI-----QNRLPIVVVINKVDRL  262 (971)
T ss_pred             ccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHH-----hccCcEEEEEehhHHH
Confidence            999888888889999999999999766654333222222     2578999999999964

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=9.3e-10  Score=78.33  Aligned_cols=146  Identities=21%  Similarity=0.191  Sum_probs=88.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh---hHHHHhhccCE
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS---IWEKYYEEAHA   94 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~~~   94 (170)
                      .+|+++|...+||||+.+-+...+++....+.+   .|.......+...=.++.+||.|||..+..   -....++.+.+
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflE---STski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA  104 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLE---STSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA  104 (347)
T ss_pred             ceEEEEeecccCcchhhheeeeccCCCceeEee---ccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence            459999999999999998887644433322111   122222112222336799999999876532   23556799999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHc-CCCCCCCcEEEEeeCCCccccCC--------HHHHHhHhCccccccceeEEEee
Q 030848           95 VVFVIDAACPSRFEDSKTALEKVLR-NEDLQGAPLLILANKQDLPDAVS--------ADELARYLDLKKLDERVCMFEAV  165 (170)
Q Consensus        95 ~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~ii~v~nK~D~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  165 (170)
                      .|+|+|+.+.. .+.+......+.. +.-.++..+-++++|.|.....-        .+...+.+...+.....+.|+-+
T Consensus       105 LifvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LT  183 (347)
T KOG3887|consen  105 LIFVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLT  183 (347)
T ss_pred             EEEEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEe
Confidence            99999987542 1222222222221 22347889999999999875321        12222333345566667778777


Q ss_pred             ec
Q 030848          166 SG  167 (170)
Q Consensus       166 Sa  167 (170)
                      |-
T Consensus       184 SI  185 (347)
T KOG3887|consen  184 SI  185 (347)
T ss_pred             ee
Confidence            63

>TIGR00101 ureG urease accessory protein UreG

Probab=99.03  E-value=6.6e-09  Score=73.47  Aligned_cols=88  Identities=20%  Similarity=0.172  Sum_probs=52.5

Q ss_pred             eEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHH
Q 030848           68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADE  145 (170)
Q Consensus        68 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~  145 (170)
                      ....++++.|..-......   .-++.++.|+|+.+......  ....++ .      ..-++++||+|+.+.  ...+.
T Consensus        92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi-~------~ad~~~~~k~d~~~~~~~~~~~  159 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI-T------RSDLLVINKIDLAPMVGADLGV  159 (199)
T ss_pred             CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh-h------hccEEEEEhhhccccccccHHH
Confidence            4677889988321111111   22578999999986544321  111111 1      112899999999863  44555


Q ss_pred             HHhHhCccccccceeEEEeeeccCC
Q 030848          146 LARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ..+.++..   ....+++++||++|
T Consensus       160 ~~~~~~~~---~~~~~i~~~Sa~~g  181 (199)
T TIGR00101       160 MERDAKKM---RGEKPFIFTNLKTK  181 (199)
T ss_pred             HHHHHHHh---CCCCCEEEEECCCC
Confidence            55555532   23578999999987

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.01  E-value=4.1e-09  Score=77.31  Aligned_cols=90  Identities=19%  Similarity=0.220  Sum_probs=61.2

Q ss_pred             CeEEEEEEcCC--CCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC-CH
Q 030848           67 NSKLVFWDLGG--QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV-SA  143 (170)
Q Consensus        67 ~~~~~i~D~~G--~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~-~~  143 (170)
                      +..+.|+.|.|  |.+..     ..+-+|.+++|.-+.-.+..+..+..+.++-.         ++++||.|..+.. ..
T Consensus       143 G~DvIIVETVGvGQsev~-----I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD---------i~vINKaD~~~A~~a~  208 (323)
T COG1703         143 GYDVIIVETVGVGQSEVD-----IANMADTFLVVMIPGAGDDLQGIKAGIMEIAD---------IIVINKADRKGAEKAA  208 (323)
T ss_pred             CCCEEEEEecCCCcchhH-----HhhhcceEEEEecCCCCcHHHHHHhhhhhhhh---------eeeEeccChhhHHHHH
Confidence            56899999998  33222     23567999999887777777777766666633         8999999965532 22


Q ss_pred             HHHHhHhC----ccccccceeEEEeeeccCC
Q 030848          144 DELARYLD----LKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       144 ~~~~~~~~----~~~~~~~~~~~~~~Sa~~g  170 (170)
                      .++...++    ......+..|++.+||.+|
T Consensus       209 r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g  239 (323)
T COG1703         209 RELRSALDLLREVWRENGWRPPVVTTSALEG  239 (323)
T ss_pred             HHHHHHHHhhcccccccCCCCceeEeeeccC
Confidence            23333333    2344677889999999876

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=1.2e-10  Score=85.42  Aligned_cols=152  Identities=16%  Similarity=0.132  Sum_probs=94.6

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-------E----------------------
Q 030848           12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-------R----------------------   62 (170)
Q Consensus        12 ~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~----------------------   62 (170)
                      +.++..++|.-+|+...||||+++++++..+.....   +...++.+...       .                      
T Consensus        33 isRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~---ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~  109 (466)
T KOG0466|consen   33 ISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKN---ELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDR  109 (466)
T ss_pred             hhheeeeeecceeccccCcceeeeeeccceEEEehh---hhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCC
Confidence            445778999999999999999999996533221110   00000000000       0                      


Q ss_pred             --EE---ec-----CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 030848           63 --IE---VS-----NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA  132 (170)
Q Consensus        63 --~~---~~-----~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~  132 (170)
                        .+   ..     -..+.++|+||++-+.........-.|++++++..+.++......+.+..+-..   .-..++++-
T Consensus       110 ~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM---~LkhiiilQ  186 (466)
T KOG0466|consen  110 PPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM---KLKHIIILQ  186 (466)
T ss_pred             CCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh---hhceEEEEe
Confidence              00   00     136899999999887776666667788999999887655543333333333111   124589999


Q ss_pred             eCCCccccCCHHHHHhHhC--ccccccceeEEEeeeccC
Q 030848          133 NKQDLPDAVSADELARYLD--LKKLDERVCMFEAVSGYD  169 (170)
Q Consensus       133 nK~D~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~  169 (170)
                      ||+|+..+.+..|..+.++  ..+...+..|++++||..
T Consensus       187 NKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQl  225 (466)
T KOG0466|consen  187 NKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQL  225 (466)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhh
Confidence            9999988665555544444  223345678999999864

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.98  E-value=3.1e-09  Score=75.65  Aligned_cols=143  Identities=17%  Similarity=0.105  Sum_probs=74.9

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCC------CC---CCc-ccCCcceeEEE--------------------
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG------LP---PDR-IVPTVGLNIGR--------------------   62 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~------~~---~~~-~~~~~~~~~~~--------------------   62 (170)
                      ..+....|.++|+.|+|||||++++.........      ..   .+. .....+.....                    
T Consensus        18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~   97 (207)
T TIGR00073        18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALED   97 (207)
T ss_pred             hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHH
Confidence            3446778999999999999999999653221000      00   000 00000000000                    


Q ss_pred             EEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC-
Q 030848           63 IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV-  141 (170)
Q Consensus        63 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~-  141 (170)
                      ....+..+.++++.|.-....   .+....+..+.|+|+.+......   .....      ...|.++++||+|+.+.. 
T Consensus        98 ~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~---~~~~~------~~~a~iiv~NK~Dl~~~~~  165 (207)
T TIGR00073        98 LPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL---KYPGM------FKEADLIVINKADLAEAVG  165 (207)
T ss_pred             hccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh---hhHhH------HhhCCEEEEEHHHccccch
Confidence            001134677888888211111   11123455567777765432111   01111      245679999999997632 


Q ss_pred             -CHHHHHhHhCccccccceeEEEeeeccCC
Q 030848          142 -SADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       142 -~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                       ...+..+.++..   ....+++++||++|
T Consensus       166 ~~~~~~~~~l~~~---~~~~~i~~~Sa~~g  192 (207)
T TIGR00073       166 FDVEKMKADAKKI---NPEAEIILMSLKTG  192 (207)
T ss_pred             hhHHHHHHHHHHh---CCCCCEEEEECCCC
Confidence             244455544421   13478999999986

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=8.6e-10  Score=88.97  Aligned_cols=113  Identities=21%  Similarity=0.283  Sum_probs=78.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE----------------ecCeEEEEEEcCCCCcc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE----------------VSNSKLVFWDLGGQPGL   81 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~~   81 (170)
                      .-+||+|+..+|||-|+..+.+  +++.........+.++.++....                +.-..+.++||||++.|
T Consensus       476 PIcCilGHVDTGKTKlld~ir~--tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF  553 (1064)
T KOG1144|consen  476 PICCILGHVDTGKTKLLDKIRG--TNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF  553 (1064)
T ss_pred             ceEEEeecccccchHHHHHhhc--cccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence            4589999999999999999977  44444433344444444433211                12235889999999999


Q ss_pred             hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 030848           82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL  137 (170)
Q Consensus        82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~  137 (170)
                      ...+......||.+|+|+|+-..-.-+.    ++.+ +.+...+.|+|+.+||+|-
T Consensus       554 tnlRsrgsslC~~aIlvvdImhGlepqt----iESi-~lLR~rktpFivALNKiDR  604 (1064)
T KOG1144|consen  554 TNLRSRGSSLCDLAILVVDIMHGLEPQT----IESI-NLLRMRKTPFIVALNKIDR  604 (1064)
T ss_pred             hhhhhccccccceEEEEeehhccCCcch----hHHH-HHHHhcCCCeEEeehhhhh
Confidence            9999999999999999999974311111    1122 2222268999999999996

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=98.96  E-value=1.5e-08  Score=80.02  Aligned_cols=131  Identities=21%  Similarity=0.353  Sum_probs=87.4

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      .++-+.+.++|+.++|||.+++.+.+  ....+.......+...++.....++..-+.+-|.+-. ........- ..||
T Consensus       422 ~R~Vf~C~V~G~k~~GKs~lL~sflg--r~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cD  497 (625)
T KOG1707|consen  422 DRKVFQCFVVGPKNCGKSALLQSFLG--RSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACD  497 (625)
T ss_pred             cceeeeEEEEcCCcCchHHHHHHHhc--cccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceee
Confidence            45668899999999999999999976  2222222223334444444444455566777777653 221111111 6799


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-----cCCHHHHHhHhC
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-----AVSADELARYLD  151 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-----~~~~~~~~~~~~  151 (170)
                      +++++||.+++.+++............   ...|++++.+|+|+.+     +.++++.+..+.
T Consensus       498 v~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~  557 (625)
T KOG1707|consen  498 VACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLG  557 (625)
T ss_pred             eEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcC
Confidence            999999999999998877766665443   5889999999999976     234445544443

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.95  E-value=3.7e-08  Score=77.66  Aligned_cols=94  Identities=19%  Similarity=0.359  Sum_probs=70.2

Q ss_pred             EEEEEEcCC-------------CCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 030848           69 KLVFWDLGG-------------QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ  135 (170)
Q Consensus        69 ~~~i~D~~G-------------~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~  135 (170)
                      ...++|+||             -+.+.++...++.+.+++|+|+.   ..+.+..+...-.+...+.+.+...|+|+||.
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQ---DGSVDAERSnVTDLVsq~DP~GrRTIfVLTKV  489 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQ---DGSVDAERSIVTDLVSQMDPHGRRTIFVLTKV  489 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEec---cCCcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence            589999999             22345566788999999999993   34556666667777778887889999999999


Q ss_pred             Ccccc--CCHHHHHhHhCccccccceeEEEee
Q 030848          136 DLPDA--VSADELARYLDLKKLDERVCMFEAV  165 (170)
Q Consensus       136 D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  165 (170)
                      |+.++  .+++.+.+.+.-..+......|+.+
T Consensus       490 DlAEknlA~PdRI~kIleGKLFPMKALGYfaV  521 (980)
T KOG0447|consen  490 DLAEKNVASPSRIQQIIEGKLFPMKALGYFAV  521 (980)
T ss_pred             chhhhccCCHHHHHHHHhcCccchhhcceeEE
Confidence            99874  5778888888755454445555544

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.95  E-value=2.2e-08  Score=75.41  Aligned_cols=119  Identities=18%  Similarity=0.198  Sum_probs=75.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec-------------------------------
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-------------------------------   66 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------   66 (170)
                      .-|+++|.-..|||||++-+...  +.. .......||++.......+.                               
T Consensus        59 Pmill~GqyStGKTtfi~yLle~--dyp-g~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR  135 (532)
T KOG1954|consen   59 PMILLVGQYSTGKTTFIRYLLEQ--DYP-GLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR  135 (532)
T ss_pred             ceEEEEeccccchhHHHHHHHhC--CCC-ccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence            46899999999999999999762  211 11122233333322221111                               


Q ss_pred             ----------CeEEEEEEcCC------C---C--cchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCC
Q 030848           67 ----------NSKLVFWDLGG------Q---P--GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG  125 (170)
Q Consensus        67 ----------~~~~~i~D~~G------~---~--~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  125 (170)
                                --++.++||||      |   +  .+....+=+..++|.++++||+..-+--.+....+.++..    .+
T Consensus       136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~E  211 (532)
T KOG1954|consen  136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----HE  211 (532)
T ss_pred             HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----Cc
Confidence                      01799999999      1   1  1234455567899999999998755444454445555533    45


Q ss_pred             CcEEEEeeCCCccccCCH
Q 030848          126 APLLILANKQDLPDAVSA  143 (170)
Q Consensus       126 ~~ii~v~nK~D~~~~~~~  143 (170)
                      -.+-+|+||+|..+..+.
T Consensus       212 dkiRVVLNKADqVdtqqL  229 (532)
T KOG1954|consen  212 DKIRVVLNKADQVDTQQL  229 (532)
T ss_pred             ceeEEEeccccccCHHHH
Confidence            678999999998765443

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.94  E-value=4.6e-10  Score=79.48  Aligned_cols=87  Identities=24%  Similarity=0.474  Sum_probs=71.8

Q ss_pred             cCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeC----------CCcccHHHHHHHHHHHHcCCC
Q 030848           53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA----------ACPSRFEDSKTALEKVLRNED  122 (170)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~~~~~~~~~~~~~~~~~~  122 (170)
                      .||+++..+.+++++..+.++|.+|+..-+.-|..++.++-.+++++..          ++....++....+..++.+.+
T Consensus       184 vPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPW  263 (359)
T KOG0085|consen  184 VPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW  263 (359)
T ss_pred             cCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcccc
Confidence            3678887778888889999999999988888888888776666665543          345567788889999999999


Q ss_pred             CCCCcEEEEeeCCCccc
Q 030848          123 LQGAPLLILANKQDLPD  139 (170)
Q Consensus       123 ~~~~~ii~v~nK~D~~~  139 (170)
                      ..+.++|+++||.|+.+
T Consensus       264 F~nssVIlFLNKkDlLE  280 (359)
T KOG0085|consen  264 FQNSSVILFLNKKDLLE  280 (359)
T ss_pred             ccCCceEEEechhhhhh
Confidence            99999999999999854

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.92  E-value=3.7e-09  Score=77.09  Aligned_cols=83  Identities=17%  Similarity=0.091  Sum_probs=59.6

Q ss_pred             CcchhhHHHHhhccCEEEEEEeCCCcc-cHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCH-HHHHhHhCccccc
Q 030848           79 PGLRSIWEKYYEEAHAVVFVIDAACPS-RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA-DELARYLDLKKLD  156 (170)
Q Consensus        79 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~-~~~~~~~~~~~~~  156 (170)
                      +++..+...+++++|.+++|+|++++. +++.+..|+..+..    .+.|+++|+||+||.+.... .+..+.++     
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-----   94 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-----   94 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHH-----
Confidence            344444455789999999999999887 78888888765533    57899999999999653222 12333333     


Q ss_pred             cceeEEEeeeccCC
Q 030848          157 ERVCMFEAVSGYDG  170 (170)
Q Consensus       157 ~~~~~~~~~Sa~~g  170 (170)
                      ....+++++||++|
T Consensus        95 ~~g~~v~~~SAktg  108 (245)
T TIGR00157        95 NIGYQVLMTSSKNQ  108 (245)
T ss_pred             HCCCeEEEEecCCc
Confidence            34568999999986

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.90  E-value=1.3e-09  Score=80.47  Aligned_cols=33  Identities=18%  Similarity=0.158  Sum_probs=26.7

Q ss_pred             HHhhhccCceeEEEEEcCCCCChHHHHHHHHhh
Q 030848            8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus         8 ~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      ...++..+...-+.++|.+|||||||++++.+.
T Consensus        95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~  127 (290)
T PRK10463         95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMR  127 (290)
T ss_pred             HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            344555667788999999999999999988653

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.89  E-value=9.4e-09  Score=73.73  Aligned_cols=117  Identities=21%  Similarity=0.221  Sum_probs=74.4

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC-------cchhhHHHH
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-------GLRSIWEKY   88 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------~~~~~~~~~   88 (170)
                      ...|++++|-|.+|||||+..+..-.+....+.+    .|..+.-..+.+++..+++.|+||--       ...+.....
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeF----TTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviav  136 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEF----TTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAV  136 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhhhhceee----eEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEE
Confidence            5689999999999999999999764444443332    34444445688999999999999921       112233445


Q ss_pred             hhccCEEEEEEeCCCcccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCC
Q 030848           89 YEEAHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQD  136 (170)
Q Consensus        89 ~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D  136 (170)
                      .+.+|.++.|.|++..+-..... .-++.+--......+.+.+-..|..
T Consensus       137 ArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~g  185 (364)
T KOG1486|consen  137 ARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTG  185 (364)
T ss_pred             eecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccC
Confidence            68899999999998765443332 2233332223323344444444443

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.83  E-value=1.8e-08  Score=72.64  Aligned_cols=85  Identities=24%  Similarity=0.502  Sum_probs=70.2

Q ss_pred             CcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCC----------cccHHHHHHHHHHHHcCCCCC
Q 030848           55 TVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALEKVLRNEDLQ  124 (170)
Q Consensus        55 ~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~  124 (170)
                      |.++....+.+...++..+|.+||..-+.-|...+.+.-++|+|+..++          ...+++....+..+.+..+..
T Consensus       189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~  268 (379)
T KOG0099|consen  189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR  268 (379)
T ss_pred             ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence            4444444566667789999999999999999999999999999986642          235678888999999988888


Q ss_pred             CCcEEEEeeCCCccc
Q 030848          125 GAPLLILANKQDLPD  139 (170)
Q Consensus       125 ~~~ii~v~nK~D~~~  139 (170)
                      ...+|+++||.|+..
T Consensus       269 tisvIlFLNKqDlla  283 (379)
T KOG0099|consen  269 TISVILFLNKQDLLA  283 (379)
T ss_pred             hhheeEEecHHHHHH
Confidence            999999999999865

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.82  E-value=2.7e-09  Score=83.67  Aligned_cols=150  Identities=18%  Similarity=0.340  Sum_probs=103.1

Q ss_pred             HHHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEecCeEEEEEEcCCCCcchh
Q 030848            6 YGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSNSKLVFWDLGGQPGLRS   83 (170)
Q Consensus         6 ~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~G~~~~~~   83 (170)
                      ++.|+.+++.+++|+.|+|..++|||+|+.+++.      +++.+...+.-+...+  .++++...+.+.|-+|...   
T Consensus        19 sqewtlsrsipelk~givg~~~sgktalvhr~lt------gty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~---   89 (749)
T KOG0705|consen   19 SQEWTLSRSIPELKLGIVGTSQSGKTALVHRYLT------GTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD---   89 (749)
T ss_pred             ccceeeecccchhheeeeecccCCceeeeeeecc------ceeccccCCcCccceeeEEeeccceEeeeecccCCch---
Confidence            6789999999999999999999999999999976      4444433333222222  3445556677777777222   


Q ss_pred             hHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc----cCCHHHHHhHhCccccccce
Q 030848           84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD----AVSADELARYLDLKKLDERV  159 (170)
Q Consensus        84 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~----~~~~~~~~~~~~~~~~~~~~  159 (170)
                        ..|...+|.+|+||...+..+++........+..+......|+++++++.-...    ...-.+..+...    ....
T Consensus        90 --aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~----~~kr  163 (749)
T KOG0705|consen   90 --AQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSA----QMKR  163 (749)
T ss_pred             --hhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHH----hcCc
Confidence              234467799999999999999999988888887766656788888888754332    222223332222    2445


Q ss_pred             eEEEeeeccCC
Q 030848          160 CMFEAVSGYDG  170 (170)
Q Consensus       160 ~~~~~~Sa~~g  170 (170)
                      +.+++++|..|
T Consensus       164 csy~et~atyG  174 (749)
T KOG0705|consen  164 CSYYETCATYG  174 (749)
T ss_pred             cceeecchhhh
Confidence            67777777654

>TIGR00092 GTP-binding protein YchF

Probab=98.80  E-value=5.6e-08  Score=74.20  Aligned_cols=85  Identities=21%  Similarity=0.305  Sum_probs=57.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcc-cCCCCCCCcccCCcceeEEEE-------------EecCeEEEEEEcCCC-----
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLNIGRI-------------EVSNSKLVFWDLGGQ-----   78 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~i~D~~G~-----   78 (170)
                      +++.++|.|++|||||+|++.+... ......+....|..+.-...-             ......+.++|.||-     
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999987544 333333333444443321110             001246899999992     


Q ss_pred             --CcchhhHHHHhhccCEEEEEEeCC
Q 030848           79 --PGLRSIWEKYYEEAHAVVFVIDAA  102 (170)
Q Consensus        79 --~~~~~~~~~~~~~~~~~i~v~d~~  102 (170)
                        +.....+...++.+|++++|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence              234446667789999999999885

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>cd01858 NGP_1 NGP-1

Probab=98.77  E-value=4.9e-08  Score=66.45  Aligned_cols=56  Identities=20%  Similarity=0.256  Sum_probs=34.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG   77 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   77 (170)
                      ..++++++|.+|+|||||+|++.+......+..+.   .|...  ..+.. +..+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g---~T~~~--~~~~~-~~~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPG---ETKVW--QYITL-MKRIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCC---eeEeE--EEEEc-CCCEEEEECcC
Confidence            46789999999999999999997622211111111   12111  12222 34588999998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.76  E-value=3.3e-08  Score=73.28  Aligned_cols=120  Identities=21%  Similarity=0.277  Sum_probs=74.8

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec-CeEEEEEEcCCCC--cchhhHH-----
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQP--GLRSIWE-----   86 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~--~~~~~~~-----   86 (170)
                      .....|.+||.+++|||||++.+....    -...+..+.|.+.+....... +..+-+.||.|.-  -......     
T Consensus       176 ~s~pviavVGYTNaGKsTLikaLT~Aa----l~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~AT  251 (410)
T KOG0410|consen  176 ESSPVIAVVGYTNAGKSTLIKALTKAA----LYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQAT  251 (410)
T ss_pred             CCCceEEEEeecCccHHHHHHHHHhhh----cCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHH
Confidence            445689999999999999999997521    122233444544444444443 4557788999922  1111111     


Q ss_pred             -HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCC----CcEEEEeeCCCccc
Q 030848           87 -KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG----APLLILANKQDLPD  139 (170)
Q Consensus        87 -~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~ii~v~nK~D~~~  139 (170)
                       .....+|.++.|.|++.|.-.+..... ...++..+.+.    ..++=|-||+|..+
T Consensus       252 LeeVaeadlllHvvDiShP~ae~q~e~V-l~vL~~igv~~~pkl~~mieVdnkiD~e~  308 (410)
T KOG0410|consen  252 LEEVAEADLLLHVVDISHPNAEEQRETV-LHVLNQIGVPSEPKLQNMIEVDNKIDYEE  308 (410)
T ss_pred             HHHHhhcceEEEEeecCCccHHHHHHHH-HHHHHhcCCCcHHHHhHHHhhcccccccc
Confidence             224679999999999998664443333 33334444332    45677889999765

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=2.1e-07  Score=74.89  Aligned_cols=67  Identities=25%  Similarity=0.361  Sum_probs=47.6

Q ss_pred             EEEEEEcCC---CCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030848           69 KLVFWDLGG---QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA  140 (170)
Q Consensus        69 ~~~i~D~~G---~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~  140 (170)
                      .+.++|.||   ..+...-...+..++|++|+|.++.+.-+.. ..+.+.....    .++.|+++-||+|....
T Consensus       207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~s-ek~Ff~~vs~----~KpniFIlnnkwDasas  276 (749)
T KOG0448|consen  207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLS-EKQFFHKVSE----EKPNIFILNNKWDASAS  276 (749)
T ss_pred             cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHH-HHHHHHHhhc----cCCcEEEEechhhhhcc
Confidence            688999999   5566677777889999999999887653322 2333333333    36667888899998764

>cd01855 YqeH YqeH

Probab=98.75  E-value=3.8e-08  Score=69.04  Aligned_cols=61  Identities=23%  Similarity=0.345  Sum_probs=36.4

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCC---CCCCCcccCCcceeEEEEEecCeEEEEEEcCC
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVE---GLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG   77 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   77 (170)
                      ...++.++|.+|+|||||+|++.+......   ........+.+......+.... .+.++||||
T Consensus       126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG  189 (190)
T cd01855         126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPG  189 (190)
T ss_pred             cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcC
Confidence            346899999999999999999976322110   0111112222222222333322 689999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.74  E-value=3e-08  Score=72.16  Aligned_cols=120  Identities=22%  Similarity=0.341  Sum_probs=77.5

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC----eEEEEEEcCC-------CCc----
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN----SKLVFWDLGG-------QPG----   80 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~D~~G-------~~~----   80 (170)
                      =.++|+.||.+|.|||||++.+.+  ........+-..|++.+.....+++.    .++.++||.|       .+.    
T Consensus        41 F~FNilCvGETg~GKsTLmdtLFN--t~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~i  118 (406)
T KOG3859|consen   41 FCFNILCVGETGLGKSTLMDTLFN--TKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPI  118 (406)
T ss_pred             ceEEEEEeccCCccHHHHHHHHhc--cccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchH
Confidence            458999999999999999999987  44444445555566666655555443    4689999999       111    


Q ss_pred             ---chhhHHHHh---------------hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC
Q 030848           81 ---LRSIWEKYY---------------EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS  142 (170)
Q Consensus        81 ---~~~~~~~~~---------------~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~  142 (170)
                         +...+..|+               .+.++++|.+.++ .+++..+......-+.    .++.||-++-|.|.-....
T Consensus       119 VdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PT-GH~LKslDLvtmk~Ld----skVNIIPvIAKaDtisK~e  193 (406)
T KOG3859|consen  119 VDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPT-GHSLKSLDLVTMKKLD----SKVNIIPVIAKADTISKEE  193 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCC-CcchhHHHHHHHHHHh----hhhhhHHHHHHhhhhhHHH
Confidence               122233332               2478899999877 3444444333333222    4677899999999755433

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=98.74  E-value=4.8e-07  Score=67.37  Aligned_cols=89  Identities=22%  Similarity=0.318  Sum_probs=57.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC------eEEEEEEcCCCCcchhhHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN------SKLVFWDLGGQPGLRSIWEKYY   89 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~D~~G~~~~~~~~~~~~   89 (170)
                      ..-+|+|.|+.|+|||||+.++.+..         ...+.-++.+.++++.+      .++.+|-+-|+..........+
T Consensus        51 sgk~VlvlGdn~sGKtsLi~klqg~e---------~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al  121 (473)
T KOG3905|consen   51 SGKNVLVLGDNGSGKTSLISKLQGSE---------TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFAL  121 (473)
T ss_pred             CCCeEEEEccCCCchhHHHHHhhccc---------ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcc
Confidence            34689999999999999999997732         22233344444555432      4688888889776655544433


Q ss_pred             hc---c-CEEEEEEeCCCcccH-HHHHHH
Q 030848           90 EE---A-HAVVFVIDAACPSRF-EDSKTA  113 (170)
Q Consensus        90 ~~---~-~~~i~v~d~~~~~~~-~~~~~~  113 (170)
                      ..   + -.+|++.|+++|..+ +.+..|
T Consensus       122 ~ats~aetlviltasms~Pw~~lesLqkW  150 (473)
T KOG3905|consen  122 PATSLAETLVILTASMSNPWTLLESLQKW  150 (473)
T ss_pred             cccCccceEEEEEEecCCcHHHHHHHHHH
Confidence            32   2 367788899998554 333333

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.74  E-value=3.4e-08  Score=68.26  Aligned_cols=56  Identities=23%  Similarity=0.344  Sum_probs=35.4

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG   77 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   77 (170)
                      ..++++++|.+++|||||+|++.+......+.   ....|....  .+.. +..+.++||||
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~---~pg~T~~~~--~~~~-~~~~~l~DtPG  171 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGA---TPGVTKSMQ--EVHL-DKKVKLLDSPG  171 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccceecC---CCCeEcceE--EEEe-CCCEEEEECcC
Confidence            45899999999999999999998632211111   111122222  2222 34689999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.71  E-value=5.1e-08  Score=65.19  Aligned_cols=54  Identities=17%  Similarity=0.241  Sum_probs=33.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCC
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ   78 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   78 (170)
                      +++++|.+|+|||||+|++.+.....   ....  +..+.....+...+ .+.+|||||-
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~---~~~~--~~~~~~~~~~~~~~-~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVS---VSAT--PGKTKHFQTIFLTP-TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcee---eCCC--CCcccceEEEEeCC-CEEEEECCCc
Confidence            89999999999999999997622111   1111  11111222333332 6899999994

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.70  E-value=9.4e-07  Score=63.66  Aligned_cols=92  Identities=14%  Similarity=0.116  Sum_probs=53.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe---cCeEEEEEEcCCCCcc------hhh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---SNSKLVFWDLGGQPGL------RSI   84 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~D~~G~~~~------~~~   84 (170)
                      ..+-..|.|+|++++|||+|+|.+.+..... .........|.++-......   .+..+.++||+|-...      ...
T Consensus         4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f-~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~   82 (224)
T cd01851           4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGF-DVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDA   82 (224)
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhCCCCCe-EecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhh
Confidence            3456679999999999999999998731111 11111222333433333333   3578999999993321      111


Q ss_pred             HHHHhh--ccCEEEEEEeCCCccc
Q 030848           85 WEKYYE--EAHAVVFVIDAACPSR  106 (170)
Q Consensus        85 ~~~~~~--~~~~~i~v~d~~~~~~  106 (170)
                      ....+.  -++++||..+....+.
T Consensus        83 ~~~~l~~llss~~i~n~~~~~~~~  106 (224)
T cd01851          83 RLFALATLLSSVLIYNSWETILGD  106 (224)
T ss_pred             HHHHHHHHHhCEEEEeccCcccHH
Confidence            222223  3788888887765443

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.69  E-value=5.7e-08  Score=64.95  Aligned_cols=76  Identities=22%  Similarity=0.259  Sum_probs=49.9

Q ss_pred             HHHHhhccCEEEEEEeCCCcccHH--HHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEE
Q 030848           85 WEKYYEEAHAVVFVIDAACPSRFE--DSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMF  162 (170)
Q Consensus        85 ~~~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (170)
                      ....++++|++++|+|++++.+..  .+..++..    .. .+.|+++++||+|+.++....+..+.++     .....+
T Consensus         5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~----~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~-----~~~~~i   74 (141)
T cd01857           5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKE----VD-PRKKNILLLNKADLLTEEQRKAWAEYFK-----KEGIVV   74 (141)
T ss_pred             HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHh----cc-CCCcEEEEEechhcCCHHHHHHHHHHHH-----hcCCeE
Confidence            344568999999999998876543  22222222    11 4679999999999965443334444444     233578


Q ss_pred             EeeeccCC
Q 030848          163 EAVSGYDG  170 (170)
Q Consensus       163 ~~~Sa~~g  170 (170)
                      +++||++|
T Consensus        75 i~iSa~~~   82 (141)
T cd01857          75 VFFSALKE   82 (141)
T ss_pred             EEEEecCC
Confidence            89999875

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.68  E-value=5.4e-08  Score=78.97  Aligned_cols=118  Identities=15%  Similarity=0.150  Sum_probs=78.5

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCC----------CCCcccCCcceeEEEEE--ecCeEEEEEEcCCCCcch
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL----------PPDRIVPTVGLNIGRIE--VSNSKLVFWDLGGQPGLR   82 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~----------~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~   82 (170)
                      ...-+++++-+...|||||...+......+...          -.++....+......+.  .++..+.++|+||+..|.
T Consensus         7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~   86 (887)
T KOG0467|consen    7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS   86 (887)
T ss_pred             CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence            345679999999999999999995422211111          01111112222222333  378899999999999999


Q ss_pred             hhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 030848           83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL  137 (170)
Q Consensus        83 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~  137 (170)
                      +......+-+|++++++|+...-.-+..     .++++.+-.+...++++||+|-
T Consensus        87 sevssas~l~d~alvlvdvvegv~~qt~-----~vlrq~~~~~~~~~lvinkidr  136 (887)
T KOG0467|consen   87 SEVSSASRLSDGALVLVDVVEGVCSQTY-----AVLRQAWIEGLKPILVINKIDR  136 (887)
T ss_pred             hhhhhhhhhcCCcEEEEeeccccchhHH-----HHHHHHHHccCceEEEEehhhh
Confidence            9898888999999999999855332222     2233333346678999999993

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=98.68  E-value=1e-06  Score=69.71  Aligned_cols=83  Identities=28%  Similarity=0.466  Sum_probs=57.3

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC------eEEEEEEcCCCCcchhhHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN------SKLVFWDLGGQPGLRSIWEKYY   89 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~D~~G~~~~~~~~~~~~   89 (170)
                      .+-.|+|+|..++|||||+.+|.+..         ...++.++.+...+..+      ..+.+|-+.|...+..+....+
T Consensus        24 ~~k~vlvlG~~~~GKttli~~L~~~e---------~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~l   94 (472)
T PF05783_consen   24 SEKSVLVLGDKGSGKTTLIARLQGIE---------DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFAL   94 (472)
T ss_pred             CCceEEEEeCCCCchHHHHHHhhccC---------CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccC
Confidence            45689999999999999999986521         12345566655554432      3689999988766666554433


Q ss_pred             hc----cCEEEEEEeCCCcccH
Q 030848           90 EE----AHAVVFVIDAACPSRF  107 (170)
Q Consensus        90 ~~----~~~~i~v~d~~~~~~~  107 (170)
                      ..    .-.+++|+|.+.|..+
T Consensus        95 t~~~l~~t~vvIvlDlS~PW~~  116 (472)
T PF05783_consen   95 TPENLPNTLVVIVLDLSKPWNI  116 (472)
T ss_pred             CcccccceEEEEEecCCChHHH
Confidence            32    2467889999988655

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=2.1e-07  Score=70.47  Aligned_cols=122  Identities=22%  Similarity=0.288  Sum_probs=71.4

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhh-ccc----------------CCCCCCCcccCCcceeEE--EEEec----------
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSV-YSN----------------VEGLPPDRIVPTVGLNIG--RIEVS----------   66 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~-~~~----------------~~~~~~~~~~~~~~~~~~--~~~~~----------   66 (170)
                      -++|+.++|...+|||||+--+..- ..+                ..+.++.-.....+.+..  .+++.          
T Consensus       166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e  245 (591)
T KOG1143|consen  166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE  245 (591)
T ss_pred             eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence            3579999999999999998665220 011                111111111222222211  12221          


Q ss_pred             --CeEEEEEEcCCCCcchhhHHHHhh--ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC
Q 030848           67 --NSKLVFWDLGGQPGLRSIWEKYYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS  142 (170)
Q Consensus        67 --~~~~~i~D~~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~  142 (170)
                        ..-+.++|++|+..+.......+.  -.|.+++|+.++....+.. ++.+.-+..    -+.|++++.+|+|+.++..
T Consensus       246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A----L~iPfFvlvtK~Dl~~~~~  320 (591)
T KOG1143|consen  246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA----LNIPFFVLVTKMDLVDRQG  320 (591)
T ss_pred             hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH----hCCCeEEEEEeeccccchh
Confidence              235899999999887654433222  3588899999887655421 222222211    4889999999999977533

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.62  E-value=1.2e-08  Score=78.08  Aligned_cols=129  Identities=22%  Similarity=0.181  Sum_probs=88.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhccc------CC-CCCCC-------cccCCcceeEEEEEecCeEEEEEEcCCCCcchh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSN------VE-GLPPD-------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS   83 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~------~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   83 (170)
                      -+|.++..-.+||||...++......      +. +.+.+       ...-|+...-..+++++.++.++||||+..++-
T Consensus        38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l  117 (753)
T KOG0464|consen   38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL  117 (753)
T ss_pred             hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence            47899999999999999999432111      11 11111       111233333445778899999999999999999


Q ss_pred             hHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc---CCHHHHHhHhC
Q 030848           84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA---VSADELARYLD  151 (170)
Q Consensus        84 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~---~~~~~~~~~~~  151 (170)
                      ...++++--|+++.|||++..-.-+.+     .+..+..+.+.|-++++||+|....   ...+.+++.+.
T Consensus       118 everclrvldgavav~dasagve~qtl-----tvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~  183 (753)
T KOG0464|consen  118 EVERCLRVLDGAVAVFDASAGVEAQTL-----TVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLG  183 (753)
T ss_pred             EHHHHHHHhcCeEEEEeccCCccccee-----eeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhC
Confidence            899999999999999999854222221     2223344468899999999998763   34555555555

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.60  E-value=1.5e-07  Score=68.42  Aligned_cols=146  Identities=16%  Similarity=0.155  Sum_probs=78.8

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC----------CCcchhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----------QPGLRSI   84 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~   84 (170)
                      ..+.++.+.|.+++|||||+|.+..... ...........|..++.   -.-+.++.++|+||          .++....
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~-~~~t~k~K~g~Tq~in~---f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~  209 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVKN-IADTSKSKNGKTQAINH---FHVGKSWYEVDLPGYGRAGYGFELPADWDKF  209 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhhh-hhhhcCCCCccceeeee---eeccceEEEEecCCcccccCCccCcchHhHh
Confidence            3568999999999999999999965211 11111112333333332   22346789999999          2333444


Q ss_pred             HHHHhhccC---EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC------HHHHHhHhC--cc
Q 030848           85 WEKYYEEAH---AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS------ADELARYLD--LK  153 (170)
Q Consensus        85 ~~~~~~~~~---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~------~~~~~~~~~--~~  153 (170)
                      ...|+.+-+   -+.+++|++-+-  +....   ..+++++..+.|+.+|+||+|.....-      ...+...++  ..
T Consensus       210 t~~Y~leR~nLv~~FLLvd~sv~i--~~~D~---~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~  284 (320)
T KOG2486|consen  210 TKSYLLERENLVRVFLLVDASVPI--QPTDN---PEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIR  284 (320)
T ss_pred             HHHHHHhhhhhheeeeeeeccCCC--CCCCh---HHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccc
Confidence            555543322   334455665332  21111   122333336899999999999864221      122222122  12


Q ss_pred             ccccceeEEEeeeccC
Q 030848          154 KLDERVCMFEAVSGYD  169 (170)
Q Consensus       154 ~~~~~~~~~~~~Sa~~  169 (170)
                      +......|.+-+|+.+
T Consensus       285 ~~f~~~~Pw~~~Ssvt  300 (320)
T KOG2486|consen  285 GVFLVDLPWIYVSSVT  300 (320)
T ss_pred             cceeccCCceeeeccc
Confidence            2234455666677765

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.60  E-value=2.6e-07  Score=70.13  Aligned_cols=123  Identities=15%  Similarity=0.137  Sum_probs=74.5

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh-hcccCCCCCCC-----------cccCCcceeEEEE-------------------
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS-VYSNVEGLPPD-----------RIVPTVGLNIGRI-------------------   63 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~-~~~~~~~~~~~-----------~~~~~~~~~~~~~-------------------   63 (170)
                      +..+.+.+.|+.++|||||+-++.. ...+-.+....           .....+.....-+                   
T Consensus       115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~  194 (527)
T COG5258         115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA  194 (527)
T ss_pred             CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence            4668899999999999999988732 11111111110           0111111111111                   


Q ss_pred             --EecCeEEEEEEcCCCCcchhhHHH--HhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           64 --EVSNSKLVFWDLGGQPGLRSIWEK--YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        64 --~~~~~~~~i~D~~G~~~~~~~~~~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                        .-.+.-+.++||.|+|.+.++...  +-++.|..++++.+++.-+.. .+    +.+...-.-+.|++++.||+|+.+
T Consensus       195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tk----EHLgi~~a~~lPviVvvTK~D~~~  269 (527)
T COG5258         195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TK----EHLGIALAMELPVIVVVTKIDMVP  269 (527)
T ss_pred             hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hh----HhhhhhhhhcCCEEEEEEecccCc
Confidence              112356899999999998765443  347899999999998764421 11    111111124789999999999977


Q ss_pred             cCC
Q 030848          140 AVS  142 (170)
Q Consensus       140 ~~~  142 (170)
                      ..-
T Consensus       270 ddr  272 (527)
T COG5258         270 DDR  272 (527)
T ss_pred             HHH
Confidence            443

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=98.57  E-value=1.4e-08  Score=77.14  Aligned_cols=156  Identities=22%  Similarity=0.199  Sum_probs=95.6

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCC------------CCC-------------c--ccCCcceeEEEEEecC
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL------------PPD-------------R--IVPTVGLNIGRIEVSN   67 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~------------~~~-------------~--~~~~~~~~~~~~~~~~   67 (170)
                      +..++++++|...+||||+-..|.....-+...            ..+             .  -..|++...-++.-..
T Consensus        77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~  156 (501)
T KOG0459|consen   77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN  156 (501)
T ss_pred             CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence            677899999999999999976662211111110            000             1  1135555555677778


Q ss_pred             eEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCccc---HHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHH
Q 030848           68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR---FEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSAD  144 (170)
Q Consensus        68 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~  144 (170)
                      ..+.+.|.||+..+......-..++|..++|+.+.-.+.   |+.-.+.-..........-...|+++||+|-+.-....
T Consensus       157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~  236 (501)
T KOG0459|consen  157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN  236 (501)
T ss_pred             eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcch
Confidence            899999999999988766667788999999998853321   22111111122111112345789999999988633322


Q ss_pred             ----HHHhHhC----ccc-cccceeEEEeeeccCC
Q 030848          145 ----ELARYLD----LKK-LDERVCMFEAVSGYDG  170 (170)
Q Consensus       145 ----~~~~~~~----~~~-~~~~~~~~~~~Sa~~g  170 (170)
                          |..+.+.    ..+ .......|++||..+|
T Consensus       237 eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG  271 (501)
T KOG0459|consen  237 ERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTG  271 (501)
T ss_pred             hhHHHHHHHHHHHHHHhcccCCCCceeeecccccc
Confidence                2222222    222 2345677999998876

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.57  E-value=2e-07  Score=71.72  Aligned_cols=129  Identities=10%  Similarity=0.135  Sum_probs=67.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHH--------HH
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWE--------KY   88 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~--------~~   88 (170)
                      ..++.++|.+|+|||||+|++.+..............|.+......+.. +..+.++||||-........        ..
T Consensus       154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~-~~~~~l~DtPG~~~~~~~~~~l~~~~l~~~  232 (360)
T TIGR03597       154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL-DDGHSLYDTPGIINSHQMAHYLDKKDLKYI  232 (360)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe-CCCCEEEECCCCCChhHhhhhcCHHHHhhc
Confidence            3689999999999999999998732211111111222332333333433 23467999999433221111        11


Q ss_pred             h--hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC
Q 030848           89 Y--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD  151 (170)
Q Consensus        89 ~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~  151 (170)
                      .  +......+.++..+.-.+..+..     +......+..+.+..++.+.......+.+.+.++
T Consensus       233 ~~~~~i~~~~~~l~~~q~~~~ggl~~-----~d~~~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~  292 (360)
T TIGR03597       233 TPKKEIKPKTYQLNPNQTLFLGGLAR-----FDYLKGEKTSFTFYVSNELNIHRTKLENADELYN  292 (360)
T ss_pred             CCCCccCceEEEeCCCCEEEEceEEE-----EEEecCCceEEEEEccCCceeEeechhhhHHHHH
Confidence            1  23566677776655433333211     1112223556777777777665444444444433

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.57  E-value=4.2e-07  Score=67.86  Aligned_cols=84  Identities=24%  Similarity=0.394  Sum_probs=58.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec-----------------CeEEEEEEcCC
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-----------------NSKLVFWDLGG   77 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~i~D~~G   77 (170)
                      .+++++.+||.|++|||||+|.+....-...+..+.    |++-+...+.+.                 +..++++|.+|
T Consensus        18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~----TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAG   93 (391)
T KOG1491|consen   18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFC----TIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAG   93 (391)
T ss_pred             CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcc----eeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecc
Confidence            477899999999999999999997633332222222    222222223221                 23699999999


Q ss_pred             -------CCcchhhHHHHhhccCEEEEEEeCC
Q 030848           78 -------QPGLRSIWEKYYEEAHAVVFVIDAA  102 (170)
Q Consensus        78 -------~~~~~~~~~~~~~~~~~~i~v~d~~  102 (170)
                             .+.+...+...++.+|+++.|+++.
T Consensus        94 LvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   94 LVKGASAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             cccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence                   4556667777889999999999764

>cd01859 MJ1464 MJ1464

Probab=98.56  E-value=9.4e-08  Score=64.91  Aligned_cols=78  Identities=22%  Similarity=0.231  Sum_probs=47.4

Q ss_pred             hhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEE
Q 030848           83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMF  162 (170)
Q Consensus        83 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (170)
                      .++....+++|++++|+|++++..... ... ......   .+.|+++++||+|+.+.....+......     ....++
T Consensus         4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l-~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~   73 (156)
T cd01859           4 RLVRRIIKESDVVLEVLDARDPELTRS-RKL-ERYVLE---LGKKLLIVLNKADLVPKEVLEKWKSIKE-----SEGIPV   73 (156)
T ss_pred             HHHHHHHhhCCEEEEEeeCCCCcccCC-HHH-HHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHHHHH-----hCCCcE
Confidence            455666788999999999987643322 111 122221   3679999999999864322222211111     233578


Q ss_pred             EeeeccCC
Q 030848          163 EAVSGYDG  170 (170)
Q Consensus       163 ~~~Sa~~g  170 (170)
                      +++||++|
T Consensus        74 ~~iSa~~~   81 (156)
T cd01859          74 VYVSAKER   81 (156)
T ss_pred             EEEEcccc
Confidence            99999875

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=98.54  E-value=3.3e-07  Score=63.25  Aligned_cols=56  Identities=25%  Similarity=0.388  Sum_probs=35.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG   77 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   77 (170)
                      ..++++++|.+++|||||+|++.+...  . .  ....+.+......+... ..+.+|||||
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~--~-~--~~~~~~~T~~~~~~~~~-~~~~~iDtpG  169 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKV--A-K--VGNKPGVTKGIQWIKIS-PGIYLLDTPG  169 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCc--e-e--ecCCCCEEeeeEEEEec-CCEEEEECCC
Confidence            447899999999999999999976211  0 0  01111112222223332 5689999999

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.52  E-value=3.4e-07  Score=67.98  Aligned_cols=58  Identities=28%  Similarity=0.366  Sum_probs=36.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCC
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ   78 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   78 (170)
                      ...++++++|.+|+|||||+|++.+......+.   ....|....  .+.. +..+.++||||-
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~---~~g~T~~~~--~~~~-~~~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN---RPGVTKGQQ--WIKL-SDGLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccCC---CCCeecceE--EEEe-CCCEEEEECCCc
Confidence            356899999999999999999997621111111   111122222  2333 236899999994

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.51  E-value=7.3e-07  Score=70.87  Aligned_cols=122  Identities=19%  Similarity=0.257  Sum_probs=78.3

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEE
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   95 (170)
                      +.+-+.|+|++|.|||||+..+...++..      .. ..+.-.+..+.++...+++..+|.  .+.++ ....+.+|.+
T Consensus        68 PPfIvavvGPpGtGKsTLirSlVrr~tk~------ti-~~i~GPiTvvsgK~RRiTflEcp~--Dl~~m-iDvaKIaDLV  137 (1077)
T COG5192          68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQ------TI-DEIRGPITVVSGKTRRITFLECPS--DLHQM-IDVAKIADLV  137 (1077)
T ss_pred             CCeEEEeecCCCCChhHHHHHHHHHHHHh------hh-hccCCceEEeecceeEEEEEeChH--HHHHH-HhHHHhhhee
Confidence            55677899999999999999996522211      11 122222334667888999999993  33333 3455889999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhC
Q 030848           96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLD  151 (170)
Q Consensus        96 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~  151 (170)
                      |+++|.+-.-..+ ..+.+ .++...  .-..++-|.|..|+.. +..+.++.++++
T Consensus       138 lLlIdgnfGfEME-TmEFL-nil~~H--GmPrvlgV~ThlDlfk~~stLr~~KKrlk  190 (1077)
T COG5192         138 LLLIDGNFGFEME-TMEFL-NILISH--GMPRVLGVVTHLDLFKNPSTLRSIKKRLK  190 (1077)
T ss_pred             EEEeccccCceeh-HHHHH-HHHhhc--CCCceEEEEeecccccChHHHHHHHHHHh
Confidence            9999987542222 22222 222322  3455788899999986 566666666554

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=98.50  E-value=3.6e-08  Score=68.22  Aligned_cols=41  Identities=24%  Similarity=0.159  Sum_probs=28.3

Q ss_pred             cEEEEeeCCCccccCCH--HHHHhHhCccccccceeEEEeeeccCC
Q 030848          127 PLLILANKQDLPDAVSA--DELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       127 ~ii~v~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      .-++|+||.|+.+....  +...+..+..   -...+|+.+|+++|
T Consensus       144 aDllVInK~DLa~~v~~dlevm~~da~~~---np~~~ii~~n~ktg  186 (202)
T COG0378         144 ADLLVINKTDLAPYVGADLEVMARDAKEV---NPEAPIIFTNLKTG  186 (202)
T ss_pred             eeEEEEehHHhHHHhCccHHHHHHHHHHh---CCCCCEEEEeCCCC
Confidence            45899999999884443  5444444411   24568999999987

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.50  E-value=5.8e-07  Score=78.47  Aligned_cols=114  Identities=19%  Similarity=0.196  Sum_probs=67.1

Q ss_pred             EEEEcCCCCChHHHHHHHHhhcccCCC----CCCCcccCCcceeEEEEEecCeEEEEEEcCC----CC----cchhhHHH
Q 030848           20 VLILGIDKAGKTTLLEKLKSVYSNVEG----LPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----QP----GLRSIWEK   87 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----~~----~~~~~~~~   87 (170)
                      .+|+|++|+||||++++--.. .....    ........|..|.+-    -...-.++||+|    ++    .....|..
T Consensus       114 YlviG~~gsGKtt~l~~sgl~-~pl~~~~~~~~~~~~~~t~~c~ww----f~~~avliDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNSGLK-FPLAERLGAAALRGVGGTRNCDWW----FTDEAVLIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             EEEECCCCCchhHHHHhCCCC-CcCchhhccccccCCCCCcccceE----ecCCEEEEcCCCccccCCCcccccHHHHHH
Confidence            689999999999999987221 11110    001111222223221    123467999999    22    23345655


Q ss_pred             Hhh---------ccCEEEEEEeCCCcc-----cH----HHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           88 YYE---------EAHAVVFVIDAACPS-----RF----EDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        88 ~~~---------~~~~~i~v~d~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      +++         -.|++|+++|+.+--     ..    ..++..+.++....+ -..|+.+++||+|+..
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg-~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG-ARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecchhhc
Confidence            542         389999999986321     11    233444455554444 5799999999999863

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.48  E-value=5.8e-07  Score=67.12  Aligned_cols=57  Identities=26%  Similarity=0.339  Sum_probs=35.8

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG   77 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   77 (170)
                      ...++++++|.+++||||++|++.+......+.   ....|...  ..+.. +..+.++||||
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~---~~g~T~~~--~~~~~-~~~~~l~DtPG  175 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN---RPGVTKAQ--QWIKL-GKGLELLDTPG  175 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccCC---CCCeEEEE--EEEEe-CCcEEEEECCC
Confidence            356899999999999999999997621111111   11112222  22322 34689999999

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.48  E-value=4.2e-07  Score=61.69  Aligned_cols=57  Identities=19%  Similarity=0.289  Sum_probs=35.6

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG   77 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   77 (170)
                      ....+++++|.+|+|||||+|++.+......+.   ....|....  .+.. +..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~---~~~~t~~~~--~~~~-~~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGN---VPGTTTSQQ--EVKL-DNKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccC---CCCcccceE--EEEe-cCCEEEEECCC
Confidence            456889999999999999999998632111111   111122221  2222 35689999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.47  E-value=6.7e-07  Score=68.39  Aligned_cols=74  Identities=19%  Similarity=0.119  Sum_probs=49.9

Q ss_pred             HhhccCEEEEEEeCCCcc-cHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeee
Q 030848           88 YYEEAHAVVFVIDAACPS-RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVS  166 (170)
Q Consensus        88 ~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  166 (170)
                      .+.++|.+++|+|+.++. ....+..++....    ..+.|+++|+||+|+.+.....+..+.+.     ....+++++|
T Consensus        86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~~~~~~~~~-----~~g~~v~~iS  156 (352)
T PRK12289         86 PVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQQQWQDRLQ-----QWGYQPLFIS  156 (352)
T ss_pred             hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHHHHHHHHHH-----hcCCeEEEEE
Confidence            368899999999998775 3334444444332    25789999999999965433333334443     3445789999


Q ss_pred             ccCC
Q 030848          167 GYDG  170 (170)
Q Consensus       167 a~~g  170 (170)
                      |++|
T Consensus       157 A~tg  160 (352)
T PRK12289        157 VETG  160 (352)
T ss_pred             cCCC
Confidence            9876

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.47  E-value=4.7e-07  Score=67.58  Aligned_cols=76  Identities=18%  Similarity=0.041  Sum_probs=52.5

Q ss_pred             HHHhhccCEEEEEEeCCCcc-cHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEe
Q 030848           86 EKYYEEAHAVVFVIDAACPS-RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA  164 (170)
Q Consensus        86 ~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (170)
                      +..+.++|.+++|+|++++. ++..+..|+..+..    .+.|+++|+||+|+.+............     ....++++
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~~-----~~g~~v~~  143 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEAL-----ALGYPVLA  143 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHHH-----hCCCeEEE
Confidence            34568899999999999887 77766666655433    4689999999999965422111122222     23468999


Q ss_pred             eeccCC
Q 030848          165 VSGYDG  170 (170)
Q Consensus       165 ~Sa~~g  170 (170)
                      +||++|
T Consensus       144 vSA~~g  149 (287)
T cd01854         144 VSAKTG  149 (287)
T ss_pred             EECCCC
Confidence            999876

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.46  E-value=2.8e-06  Score=57.92  Aligned_cols=63  Identities=17%  Similarity=0.189  Sum_probs=36.4

Q ss_pred             eEEEEEEcCCCCcchhhHHHH--------hhccCEEEEEEeCCCcccHH-HHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 030848           68 SKLVFWDLGGQPGLRSIWEKY--------YEEAHAVVFVIDAACPSRFE-DSKTALEKVLRNEDLQGAPLLILANKQDL  137 (170)
Q Consensus        68 ~~~~i~D~~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~ii~v~nK~D~  137 (170)
                      ....++|+||-.+.......+        .-+.+.++.++|+....... ....+..++..    .+   ++++||+|+
T Consensus        87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~----ad---~ivlnk~dl  158 (158)
T cd03112          87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF----AD---RILLNKTDL  158 (158)
T ss_pred             CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH----CC---EEEEecccC
Confidence            467899999965444333321        23578999999976432211 11222223322    12   789999996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.45  E-value=5.2e-07  Score=68.34  Aligned_cols=57  Identities=25%  Similarity=0.375  Sum_probs=36.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG   77 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   77 (170)
                      ....++.++|.|++||||++|+|.+......+..+   ..|.+..  .+... ..+.++||||
T Consensus       130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P---G~Tk~~q--~i~~~-~~i~LlDtPG  186 (322)
T COG1161         130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP---GTTKGIQ--WIKLD-DGIYLLDTPG  186 (322)
T ss_pred             ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC---ceecceE--EEEcC-CCeEEecCCC
Confidence            34588999999999999999999873331111111   1222222  22222 3389999999

>cd01859 MJ1464 MJ1464

Probab=98.44  E-value=9.8e-07  Score=59.87  Aligned_cols=54  Identities=26%  Similarity=0.372  Sum_probs=34.6

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee--EEEEEecCeEEEEEEcCC
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSKLVFWDLGG   77 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~G   77 (170)
                      ...+++++|.+++||||++|++.+...  .     ...++.+.+  ...+. .+..+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~--~-----~~~~~~~~t~~~~~~~-~~~~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHS--A-----STSPSPGYTKGEQLVK-ITSKIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCc--c-----ccCCCCCeeeeeEEEE-cCCCEEEEECcC
Confidence            457899999999999999999975211  1     111122222  11222 234799999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.43  E-value=4.7e-06  Score=65.12  Aligned_cols=116  Identities=16%  Similarity=0.129  Sum_probs=62.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccC------CCCCCCc---------ccCCcceeEEEEEe----------------
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNV------EGLPPDR---------IVPTVGLNIGRIEV----------------   65 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~------~~~~~~~---------~~~~~~~~~~~~~~----------------   65 (170)
                      ...|+++|.+|+||||++..+.......      ...+...         +....++.+.....                
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~  179 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK  179 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999885322111      0011100         11112222221110                


Q ss_pred             -cCeEEEEEEcCCCCcchh----hHHHH--hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848           66 -SNSKLVFWDLGGQPGLRS----IWEKY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP  138 (170)
Q Consensus        66 -~~~~~~i~D~~G~~~~~~----~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~  138 (170)
                       .+..+.|+||||......    ....+  ....+-+++|+|+.-...-..   ....+...    -.+--+++||.|..
T Consensus       180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~---~a~~F~~~----~~~~g~IlTKlD~~  252 (429)
T TIGR01425       180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA---QAKAFKDS----VDVGSVIITKLDGH  252 (429)
T ss_pred             hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH---HHHHHHhc----cCCcEEEEECccCC
Confidence             246899999999543322    22222  124678899999875422222   22222221    12457889999974


Q ss_pred             c
Q 030848          139 D  139 (170)
Q Consensus       139 ~  139 (170)
                      .
T Consensus       253 a  253 (429)
T TIGR01425       253 A  253 (429)
T ss_pred             C
Confidence            4

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.43  E-value=3.1e-07  Score=62.39  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -.++++|++|+|||||+|.+..
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~   57 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLP   57 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999976

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.42  E-value=5.8e-07  Score=67.45  Aligned_cols=74  Identities=24%  Similarity=0.173  Sum_probs=49.3

Q ss_pred             HhhccCEEEEEEeCCCcccHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEee
Q 030848           88 YYEEAHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAV  165 (170)
Q Consensus        88 ~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (170)
                      .+.++|.+++|+|+.++.+.... ..|+..+..    .+.|+++|+||+|+.+ .....+..+.++     ....+++++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~~~-----~~g~~v~~v  147 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDDLEEARELLALYR-----AIGYDVLEL  147 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCCHHHHHHHHHHHH-----HCCCeEEEE
Confidence            35889999999999888765544 344433322    4789999999999963 222222333333     234589999


Q ss_pred             eccCC
Q 030848          166 SGYDG  170 (170)
Q Consensus       166 Sa~~g  170 (170)
                      ||++|
T Consensus       148 SA~~g  152 (298)
T PRK00098        148 SAKEG  152 (298)
T ss_pred             eCCCC
Confidence            99875

>PRK12288 GTPase RsgA; Reviewed

Probab=98.42  E-value=8.2e-07  Score=67.86  Aligned_cols=20  Identities=25%  Similarity=0.521  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 030848           20 VLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ++++|.+|+|||||+|+|.+
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~  227 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLP  227 (347)
T ss_pred             EEEECCCCCCHHHHHHHhcc
Confidence            78999999999999999975

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.40  E-value=9.7e-07  Score=64.43  Aligned_cols=67  Identities=13%  Similarity=0.076  Sum_probs=37.8

Q ss_pred             HHHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCC----cccCCcceeEEEEEecCeEEEEEEcCCCC
Q 030848            6 YGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD----RIVPTVGLNIGRIEVSNSKLVFWDLGGQP   79 (170)
Q Consensus         6 ~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   79 (170)
                      .+++.....   ..++++|.+|+|||||+|++.+......+..+.    ..-.|.....  +...  .-.++||||-.
T Consensus       112 ~eLf~~l~~---~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l--~~l~--~~~liDtPG~~  182 (245)
T TIGR00157       112 KELIEALQN---RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVEL--FHFH--GGLIADTPGFN  182 (245)
T ss_pred             HHHHhhhcC---CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEE--EEcC--CcEEEeCCCcc
Confidence            344444332   367899999999999999997632221111111    1112333333  3332  23799999943

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd01855 YqeH YqeH

Probab=98.37  E-value=8.8e-07  Score=62.13  Aligned_cols=83  Identities=16%  Similarity=0.113  Sum_probs=50.8

Q ss_pred             chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC-HHHHHhHh---Cccccc
Q 030848           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS-ADELARYL---DLKKLD  156 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~-~~~~~~~~---~~~~~~  156 (170)
                      +..++..+++++|++++|+|++++....     ...+...  ..+.|+++|+||+|+.++.. ..+.....   ......
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~-----~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGSL-----IPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCcc-----chhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence            5778888899999999999998764211     1111111  14679999999999975332 32232222   001111


Q ss_pred             cceeEEEeeeccCC
Q 030848          157 ERVCMFEAVSGYDG  170 (170)
Q Consensus       157 ~~~~~~~~~Sa~~g  170 (170)
                      ....+++++||++|
T Consensus        97 ~~~~~i~~vSA~~~  110 (190)
T cd01855          97 LKPKDVILISAKKG  110 (190)
T ss_pred             CCcccEEEEECCCC
Confidence            11235899999876

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK13796 GTPase YqeH; Provisional

Probab=98.36  E-value=9.8e-07  Score=68.01  Aligned_cols=61  Identities=18%  Similarity=0.322  Sum_probs=35.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCC
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ   78 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   78 (170)
                      ..++.++|.+|+|||||+|++................|.+......+...+ ...++||||-
T Consensus       160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~-~~~l~DTPGi  220 (365)
T PRK13796        160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD-GSFLYDTPGI  220 (365)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC-CcEEEECCCc
Confidence            357999999999999999999753211111111122232333333333322 2479999994

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.35  E-value=9.2e-06  Score=54.79  Aligned_cols=58  Identities=14%  Similarity=0.149  Sum_probs=34.9

Q ss_pred             CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 030848           67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD  136 (170)
Q Consensus        67 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D  136 (170)
                      +..+.++||+|.....   ..++..+|-++++..++-   .+............      --++++||.|
T Consensus        91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~---~D~y~~~k~~~~~~------~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGA---GDDIQAIKAGIMEI------ADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCc---hhHHHHhhhhHhhh------cCEEEEeCCC
Confidence            4679999998854222   236788898999886651   12111111122222      2389999987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=98.34  E-value=1.6e-06  Score=60.87  Aligned_cols=79  Identities=22%  Similarity=0.325  Sum_probs=45.6

Q ss_pred             EEEEEEcCCCCcchhh---HH---HHhhcc---CEEEEEEeCC---Ccc-cHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 030848           69 KLVFWDLGGQPGLRSI---WE---KYYEEA---HAVVFVIDAA---CPS-RFEDSKTALEKVLRNEDLQGAPLLILANKQ  135 (170)
Q Consensus        69 ~~~i~D~~G~~~~~~~---~~---~~~~~~---~~~i~v~d~~---~~~-~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~  135 (170)
                      .+-++|+|||-+....   ..   ..+..-   -+++|++|..   +.. .+......+.....    -..|-|=+++|+
T Consensus        99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvlsKM  174 (273)
T KOG1534|consen   99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLSKM  174 (273)
T ss_pred             CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhhHH
Confidence            6899999998765331   11   122221   2455666543   111 12333333333333    477889999999


Q ss_pred             CccccCCHHHHHhHhC
Q 030848          136 DLPDAVSADELARYLD  151 (170)
Q Consensus       136 D~~~~~~~~~~~~~~~  151 (170)
                      |+......+++.+++.
T Consensus       175 DLlk~~~k~~l~~Fl~  190 (273)
T KOG1534|consen  175 DLLKDKNKKELERFLN  190 (273)
T ss_pred             HHhhhhhHHHHHHhcC
Confidence            9988766666666665

>PRK12289 GTPase RsgA; Reviewed

Probab=98.34  E-value=1.5e-06  Score=66.46  Aligned_cols=20  Identities=25%  Similarity=0.546  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 030848           20 VLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ++++|++|+|||||+|+|..
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~  194 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIP  194 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcC
Confidence            79999999999999999975

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.31  E-value=1e-05  Score=54.57  Aligned_cols=25  Identities=36%  Similarity=0.517  Sum_probs=22.5

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +..+||.+.|+||+||||++.++..
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e   27 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAE   27 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHH
Confidence            4578999999999999999999965

>cd01858 NGP_1 NGP-1

Probab=98.27  E-value=2.7e-06  Score=57.85  Aligned_cols=76  Identities=21%  Similarity=0.178  Sum_probs=44.7

Q ss_pred             HhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeec
Q 030848           88 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSG  167 (170)
Q Consensus        88 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  167 (170)
                      .++++|++++|+|++++..-.  ...+...+... ..+.|+++++||+|+.++....+....++.    ......+++||
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~--~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~----~~~~~~~~iSa   77 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTR--CKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSK----EYPTIAFHASI   77 (157)
T ss_pred             hhhhCCEEEEEEECCCCcccc--CHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhc----CCcEEEEEeec
Confidence            358899999999999873321  11222222221 245899999999999654333333333331    11222578898


Q ss_pred             cCC
Q 030848          168 YDG  170 (170)
Q Consensus       168 ~~g  170 (170)
                      ++|
T Consensus        78 ~~~   80 (157)
T cd01858          78 NNP   80 (157)
T ss_pred             ccc
Confidence            864

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.24  E-value=2.2e-05  Score=55.40  Aligned_cols=113  Identities=19%  Similarity=0.142  Sum_probs=58.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCC---------CCC-------cccCCcceeEEEE-----------------Ee
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGL---------PPD-------RIVPTVGLNIGRI-----------------EV   65 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~---------~~~-------~~~~~~~~~~~~~-----------------~~   65 (170)
                      .++++|++|+||||.+-++....... +.         +..       .+....++.....                 ..
T Consensus         3 vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~   81 (196)
T PF00448_consen    3 VIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK   81 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence            57899999999999998885432211 11         000       0111222222111                 11


Q ss_pred             cCeEEEEEEcCCCCcchh----hHHHHhh--ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           66 SNSKLVFWDLGGQPGLRS----IWEKYYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        66 ~~~~~~i~D~~G~~~~~~----~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      ++..+.++||||......    ....+.+  ..+-+++|++++....  ... ....+.....    +-=+++||.|...
T Consensus        82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~-~~~~~~~~~~----~~~lIlTKlDet~  154 (196)
T PF00448_consen   82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLE-QALAFYEAFG----IDGLILTKLDETA  154 (196)
T ss_dssp             TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHH-HHHHHHHHSS----TCEEEEESTTSSS
T ss_pred             cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHH-HHHHHhhccc----CceEEEEeecCCC
Confidence            235799999999544321    2222222  4677888998875532  222 2222222211    1256799999754

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.23  E-value=2.1e-06  Score=62.16  Aligned_cols=89  Identities=24%  Similarity=0.317  Sum_probs=63.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC-------cchhhHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-------GLRSIWEKYY   89 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------~~~~~~~~~~   89 (170)
                      ..++.++|-|.+||||++..+.+..++++....+......+    ...+++-++++.|+||--       ..........
T Consensus        59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG----~~~y~gaKiqlldlpgiiegakdgkgrg~qviava  134 (358)
T KOG1487|consen   59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPG----VIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVA  134 (358)
T ss_pred             ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecc----eEeccccceeeecCcchhcccccCCCCccEEEEEe
Confidence            35899999999999999999988666666554443322222    356778899999999921       1222334456


Q ss_pred             hccCEEEEEEeCCCcccHHH
Q 030848           90 EEAHAVVFVIDAACPSRFED  109 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~  109 (170)
                      +.|+.+++|.|+-.|-+-..
T Consensus       135 rtcnli~~vld~~kp~~hk~  154 (358)
T KOG1487|consen  135 RTCNLIFIVLDVLKPLSHKK  154 (358)
T ss_pred             ecccEEEEEeeccCcccHHH
Confidence            88999999999988855433

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.23  E-value=1.8e-06  Score=65.60  Aligned_cols=78  Identities=17%  Similarity=0.110  Sum_probs=48.6

Q ss_pred             eEEEEEEcCCCCcchhhHHH--HhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHH
Q 030848           68 SKLVFWDLGGQPGLRSIWEK--YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADE  145 (170)
Q Consensus        68 ~~~~i~D~~G~~~~~~~~~~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~  145 (170)
                      .-+.++|++|+|.+....--  --+-.|+..+++-++...     ....++.+...-..+.|+++|.+|+|..++..++|
T Consensus       219 KviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-----iGmTKEHLgLALaL~VPVfvVVTKIDMCPANiLqE  293 (641)
T KOG0463|consen  219 KVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-----IGMTKEHLGLALALHVPVFVVVTKIDMCPANILQE  293 (641)
T ss_pred             eeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-----eeccHHhhhhhhhhcCcEEEEEEeeccCcHHHHHH
Confidence            35899999999988653322  224568888888766431     11111222211124789999999999988666555


Q ss_pred             HHhHh
Q 030848          146 LARYL  150 (170)
Q Consensus       146 ~~~~~  150 (170)
                      -.+.+
T Consensus       294 tmKll  298 (641)
T KOG0463|consen  294 TMKLL  298 (641)
T ss_pred             HHHHH
Confidence            44443

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.22  E-value=3.3e-06  Score=63.07  Aligned_cols=63  Identities=14%  Similarity=0.105  Sum_probs=35.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCC--cccCCcceeEEEEEecCeEEEEEEcCCCCcc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL   81 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   81 (170)
                      -.++++|++|+|||||+|.+.+......+....  .....+......+.... ...++||||..++
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCcc
Confidence            578999999999999999997632222111111  01111111112233321 2368999997654

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd01856 YlqF YlqF

Probab=98.22  E-value=2.3e-06  Score=59.06  Aligned_cols=77  Identities=19%  Similarity=0.209  Sum_probs=46.5

Q ss_pred             hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeE
Q 030848           82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCM  161 (170)
Q Consensus        82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  161 (170)
                      .......++++|.+++|+|++++...... .    +....  .+.|.++++||+|+.++....+..+.++     .....
T Consensus        10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~----i~~~~--~~k~~ilVlNK~Dl~~~~~~~~~~~~~~-----~~~~~   77 (171)
T cd01856          10 LRQIKEKLKLVDLVIEVRDARIPLSSRNP-L----LEKIL--GNKPRIIVLNKADLADPKKTKKWLKYFE-----SKGEK   77 (171)
T ss_pred             HHHHHHHHhhCCEEEEEeeccCccCcCCh-h----hHhHh--cCCCEEEEEehhhcCChHHHHHHHHHHH-----hcCCe
Confidence            34445567899999999999876432211 1    11111  2468999999999965422222223333     12245


Q ss_pred             EEeeeccCC
Q 030848          162 FEAVSGYDG  170 (170)
Q Consensus       162 ~~~~Sa~~g  170 (170)
                      ++.+||++|
T Consensus        78 vi~iSa~~~   86 (171)
T cd01856          78 VLFVNAKSG   86 (171)
T ss_pred             EEEEECCCc
Confidence            788999875

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.21  E-value=3.8e-06  Score=56.98  Aligned_cols=69  Identities=22%  Similarity=0.294  Sum_probs=42.1

Q ss_pred             CEEEEEEeCCCcccHHHHHHHHH-HHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALE-KVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      |++++|+|++++.+....  ++. ....   ..+.|+++++||+|+.++....+....++.    .....++++||++|
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~---~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~----~~~~~ii~vSa~~~   70 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIERVLIK---EKGKKLILVLNKADLVPKEVLRKWLAYLRH----SYPTIPFKISATNG   70 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHHHHHh---cCCCCEEEEEechhcCCHHHHHHHHHHHHh----hCCceEEEEeccCC
Confidence            689999999887654321  222 1222   246899999999999654322222222221    12356889999876

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.19  E-value=3.1e-05  Score=58.66  Aligned_cols=24  Identities=38%  Similarity=0.664  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .-.++++|++|+||||++..+...
T Consensus       114 ~~vi~lvGpnGsGKTTt~~kLA~~  137 (318)
T PRK10416        114 PFVILVVGVNGVGKTTTIGKLAHK  137 (318)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            457889999999999999998543

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.16  E-value=1.6e-06  Score=69.16  Aligned_cols=129  Identities=20%  Similarity=0.156  Sum_probs=85.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhccc------CCCC-CCC-------cccCCcceeEEEEEecCeEEEEEEcCCCCcc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSN------VEGL-PPD-------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL   81 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~------~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   81 (170)
                      +.-+|.++-+-.+||||+-++++.....      +... ...       ...-|+......+.+.+.++.++||||+-.|
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF  117 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF  117 (721)
T ss_pred             hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence            3456889999999999999998432111      1111 000       0111333333356667889999999999999


Q ss_pred             hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhH
Q 030848           82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARY  149 (170)
Q Consensus        82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~  149 (170)
                      .-...+.++..|++++|+|+...-. ......+.+...    -+.|-+.++||+|-..+....-+...
T Consensus       118 T~EVeRALrVlDGaVlvl~aV~GVq-sQt~tV~rQ~~r----y~vP~i~FiNKmDRmGa~~~~~l~~i  180 (721)
T KOG0465|consen  118 TFEVERALRVLDGAVLVLDAVAGVE-SQTETVWRQMKR----YNVPRICFINKMDRMGASPFRTLNQI  180 (721)
T ss_pred             EEEehhhhhhccCeEEEEEccccee-hhhHHHHHHHHh----cCCCeEEEEehhhhcCCChHHHHHHH
Confidence            8888888899999999999864311 223334444433    37899999999998876654444333

>PRK12288 GTPase RsgA; Reviewed

Probab=98.16  E-value=1.2e-05  Score=61.56  Aligned_cols=76  Identities=21%  Similarity=0.107  Sum_probs=51.8

Q ss_pred             hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      ..++|.+++|++.+++.++..+..|+....    ..+.|.++|+||+|+.+....+...+....  +.....+++++||+
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--y~~~g~~v~~vSA~  191 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDI--YRNIGYRVLMVSSH  191 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHH--HHhCCCeEEEEeCC
Confidence            466899999999988888888777765442    246889999999999764322222222211  11344689999998


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       192 tg  193 (347)
T PRK12288        192 TG  193 (347)
T ss_pred             CC
Confidence            75

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.15  E-value=2.4e-05  Score=60.31  Aligned_cols=22  Identities=32%  Similarity=0.311  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -.++++|++|+||||++..|..
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~  159 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAA  159 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999999965

>PRK14974 cell division protein FtsY; Provisional

Probab=98.14  E-value=4.8e-06  Score=63.30  Aligned_cols=118  Identities=18%  Similarity=0.189  Sum_probs=61.7

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCC----CCCCc-----------ccCCcceeEEEE-----------------
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG----LPPDR-----------IVPTVGLNIGRI-----------------   63 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~----~~~~~-----------~~~~~~~~~~~~-----------------   63 (170)
                      +...|+++|++|+||||.+..+.........    ...+.           +....++.....                 
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~  218 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA  218 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence            3567999999999999988877432111100    00000           001111111100                 


Q ss_pred             EecCeEEEEEEcCCCCcc----hhhHHHHh--hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 030848           64 EVSNSKLVFWDLGGQPGL----RSIWEKYY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL  137 (170)
Q Consensus        64 ~~~~~~~~i~D~~G~~~~----~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~  137 (170)
                      ...+..+.++||+|....    ......+.  -..|.+++|+|+....   +.......+....    ..--+++||.|.
T Consensus       219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~~----~~~giIlTKlD~  291 (336)
T PRK14974        219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEAV----GIDGVILTKVDA  291 (336)
T ss_pred             HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhcC----CCCEEEEeeecC
Confidence            112456999999995432    12222222  2468889999986542   2222222222211    124788999998


Q ss_pred             ccc
Q 030848          138 PDA  140 (170)
Q Consensus       138 ~~~  140 (170)
                      ...
T Consensus       292 ~~~  294 (336)
T PRK14974        292 DAK  294 (336)
T ss_pred             CCC
Confidence            653

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.12  E-value=5.3e-06  Score=61.65  Aligned_cols=76  Identities=22%  Similarity=0.341  Sum_probs=47.7

Q ss_pred             hhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEE
Q 030848           83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMF  162 (170)
Q Consensus        83 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (170)
                      ......++.+|++|+|+|+..+.+.+..  .+....     .+.|+++|+||+|+.++....+..+.++     ....++
T Consensus        13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~-----~~~~~v   80 (276)
T TIGR03596        13 REIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFE-----EKGIKA   80 (276)
T ss_pred             HHHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHH-----HcCCeE
Confidence            3455667899999999999876543221  122222     2568999999999965322233333333     122467


Q ss_pred             EeeeccCC
Q 030848          163 EAVSGYDG  170 (170)
Q Consensus       163 ~~~Sa~~g  170 (170)
                      +.+||++|
T Consensus        81 i~iSa~~~   88 (276)
T TIGR03596        81 LAINAKKG   88 (276)
T ss_pred             EEEECCCc
Confidence            88999875

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.12  E-value=4.4e-06  Score=61.94  Aligned_cols=21  Identities=33%  Similarity=0.540  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..+++|.+|+|||||+|+|..
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p  186 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLP  186 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCc
Confidence            568999999999999999954

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.11  E-value=1.2e-05  Score=55.57  Aligned_cols=66  Identities=18%  Similarity=0.150  Sum_probs=38.8

Q ss_pred             CeEEEEEEcCCCCcch----hhHHHHh--hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           67 NSKLVFWDLGGQPGLR----SIWEKYY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        67 ~~~~~i~D~~G~~~~~----~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      +..+.++|+||.....    .....+.  ...+.+++|+|+....   ...+....+.....    ..-+++||.|...
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~~----~~~viltk~D~~~  153 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEALG----ITGVILTKLDGDA  153 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhCC----CCEEEEECCcCCC
Confidence            4568999999964322    2122222  2489999999986442   23333344433221    2567779999765

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.11  E-value=6.9e-05  Score=55.59  Aligned_cols=67  Identities=18%  Similarity=0.127  Sum_probs=38.9

Q ss_pred             cCeEEEEEEcCCCCcchhh----HHHH---hh-----ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 030848           66 SNSKLVFWDLGGQPGLRSI----WEKY---YE-----EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN  133 (170)
Q Consensus        66 ~~~~~~i~D~~G~~~~~~~----~~~~---~~-----~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~n  133 (170)
                      .+..+.++||||.......    ...+   .+     .+|.+++|+|++-.  .+.. .....+....    ..--+++|
T Consensus       153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~-~~~~~f~~~~----~~~g~IlT  225 (272)
T TIGR00064       153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNAL-EQAKVFNEAV----GLTGIILT  225 (272)
T ss_pred             CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHH-HHHHHHHhhC----CCCEEEEE
Confidence            3468999999995543221    1111   11     27899999999743  2222 2223332221    13578999


Q ss_pred             CCCccc
Q 030848          134 KQDLPD  139 (170)
Q Consensus       134 K~D~~~  139 (170)
                      |.|...
T Consensus       226 KlDe~~  231 (272)
T TIGR00064       226 KLDGTA  231 (272)
T ss_pred             ccCCCC
Confidence            999755

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.11  E-value=5.2e-05  Score=58.76  Aligned_cols=64  Identities=19%  Similarity=0.333  Sum_probs=41.4

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhh--cccCCC---------------------CCCCcccCCcceeEEEEEecCeEE
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSV--YSNVEG---------------------LPPDRIVPTVGLNIGRIEVSNSKL   70 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~--~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~   70 (170)
                      +...+-|.||||..+|||||++++...  -++..+                     ++.+++-|..+.....-+.-..++
T Consensus        14 T~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kV   93 (492)
T PF09547_consen   14 TGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKV   93 (492)
T ss_pred             cCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEE
Confidence            557799999999999999999999321  111111                     122233344444433333445789


Q ss_pred             EEEEcCC
Q 030848           71 VFWDLGG   77 (170)
Q Consensus        71 ~i~D~~G   77 (170)
                      +++|+.|
T Consensus        94 RLiDCVG  100 (492)
T PF09547_consen   94 RLIDCVG  100 (492)
T ss_pred             EEEeecc
Confidence            9999998

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=98.09  E-value=1.5e-05  Score=55.41  Aligned_cols=78  Identities=15%  Similarity=0.208  Sum_probs=46.8

Q ss_pred             eEEEEEEcCCCCcchhhH--HHH---hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC
Q 030848           68 SKLVFWDLGGQPGLRSIW--EKY---YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS  142 (170)
Q Consensus        68 ~~~~i~D~~G~~~~~~~~--~~~---~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~  142 (170)
                      ....++.+.|-.......  ...   .-..+.++.|+|+.+-.........+..-+....      ++++||+|+.+...
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~~~~  158 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVSDEQ  158 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHHHH-
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCChhh
Confidence            468889999955554431  111   1246889999999765434444444444445443      99999999988663


Q ss_pred             -HHHHHhHhC
Q 030848          143 -ADELARYLD  151 (170)
Q Consensus       143 -~~~~~~~~~  151 (170)
                       .+...+.++
T Consensus       159 ~i~~~~~~ir  168 (178)
T PF02492_consen  159 KIERVREMIR  168 (178)
T ss_dssp             -HHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence             356665554

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.07  E-value=2.9e-06  Score=65.36  Aligned_cols=84  Identities=19%  Similarity=0.267  Sum_probs=53.1

Q ss_pred             CCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc-CCHHHHHhHh----Cc
Q 030848           78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA-VSADELARYL----DL  152 (170)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~-~~~~~~~~~~----~~  152 (170)
                      ++.+..+...+.+.++++++|+|+.+...     .|...+....  .+.|+++|+||+|+.++ ...+++.+.+    +.
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHH
Confidence            45677778888889999999999976542     1222222222  25789999999999753 3344444332    21


Q ss_pred             cccccceeEEEeeeccCC
Q 030848          153 KKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       153 ~~~~~~~~~~~~~Sa~~g  170 (170)
                      .+..  ...++++||++|
T Consensus       123 ~g~~--~~~i~~vSAk~g  138 (360)
T TIGR03597       123 LGLK--PVDIILVSAKKG  138 (360)
T ss_pred             cCCC--cCcEEEecCCCC
Confidence            1111  124889999886

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.07  E-value=1.5e-05  Score=59.83  Aligned_cols=23  Identities=30%  Similarity=0.374  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      ..++++|++|+|||||+|++.+.
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~  187 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPD  187 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCC
Confidence            36889999999999999999763

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.05  E-value=0.00013  Score=58.40  Aligned_cols=116  Identities=19%  Similarity=0.255  Sum_probs=59.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCC-C-----CCCCccc-----------CCcceeEEEE-----------EecCe
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVE-G-----LPPDRIV-----------PTVGLNIGRI-----------EVSNS   68 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~-~-----~~~~~~~-----------~~~~~~~~~~-----------~~~~~   68 (170)
                      .-.++++|++|+||||++..|........ +     ...+.+.           ...++.....           ...+.
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~  429 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY  429 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence            45788999999999999988854211110 0     0000100           1112211111           11356


Q ss_pred             EEEEEEcCCCCcchhh----HHHHh-hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           69 KLVFWDLGGQPGLRSI----WEKYY-EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        69 ~~~i~D~~G~~~~~~~----~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      .+.|+||+|.......    ...+. ......++|++.+.  ...+....+..+..     ..+.-+++||.|...
T Consensus       430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~  498 (559)
T PRK12727        430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG  498 (559)
T ss_pred             CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence            7999999995432211    11110 11234567777664  23344444333322     235679999999744

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=98.04  E-value=1.2e-05  Score=57.49  Aligned_cols=69  Identities=20%  Similarity=0.210  Sum_probs=37.0

Q ss_pred             eEEEEEEcCCCCcchh------hHHHHhhccCEEEEEEeC------CCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 030848           68 SKLVFWDLGGQPGLRS------IWEKYYEEAHAVVFVIDA------ACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ  135 (170)
Q Consensus        68 ~~~~i~D~~G~~~~~~------~~~~~~~~~~~~i~v~d~------~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~  135 (170)
                      ..+.++|+|||.++..      -+...+++.+.=+.++..      ++|..+-.....-..-.-.   -+.|-|=|+.|+
T Consensus        97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~---melphVNvlSK~  173 (290)
T KOG1533|consen   97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLH---MELPHVNVLSKA  173 (290)
T ss_pred             CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHh---hcccchhhhhHh
Confidence            4799999999876522      122334445544444433      3454443222211111112   356678889999


Q ss_pred             Cccc
Q 030848          136 DLPD  139 (170)
Q Consensus       136 D~~~  139 (170)
                      |+..
T Consensus       174 Dl~~  177 (290)
T KOG1533|consen  174 DLLK  177 (290)
T ss_pred             HHHH
Confidence            9854

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=98.02  E-value=8.1e-05  Score=53.31  Aligned_cols=63  Identities=14%  Similarity=0.203  Sum_probs=38.3

Q ss_pred             EEEEEEcCC-CCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848           69 KLVFWDLGG-QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP  138 (170)
Q Consensus        69 ~~~i~D~~G-~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~  138 (170)
                      .+.++||-- -+.+.+   ...+.+|.+|.|+|++.. ++. +.+.+.++.+..+  =.++.+|+||.|..
T Consensus       135 e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~-sl~-taeri~~L~~elg--~k~i~~V~NKv~e~  198 (255)
T COG3640         135 EVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYK-SLR-TAERIKELAEELG--IKRIFVVLNKVDEE  198 (255)
T ss_pred             cEEEEecccchhhhcc---ccccCCCEEEEEeCCcHH-HHH-HHHHHHHHHHHhC--CceEEEEEeeccch
Confidence            577777753 333332   123679999999998743 222 2333444444332  26899999999954

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=98.02  E-value=9.8e-06  Score=63.77  Aligned_cols=141  Identities=17%  Similarity=0.190  Sum_probs=88.1

Q ss_pred             HHHHhhhccCcee-EEEEEcCCCCChHHHHHHHHhhcccCC----C--CCCCcc--cCCcceeEE--EE-----------
Q 030848            6 YGLWKYIFTKTEF-HVLILGIDKAGKTTLLEKLKSVYSNVE----G--LPPDRI--VPTVGLNIG--RI-----------   63 (170)
Q Consensus         6 ~~~~~~~~~~~~~-~i~vvG~~~~GKSsl~~~l~~~~~~~~----~--~~~~~~--~~~~~~~~~--~~-----------   63 (170)
                      +++...+.++.++ ++.++-+...|||||..++.....-+.    +  .+.+..  .+.-+++++  .+           
T Consensus         7 d~vr~lM~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl   86 (842)
T KOG0469|consen    7 DQVRELMDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDL   86 (842)
T ss_pred             HHHHHHhccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHH
Confidence            5666677777666 588999999999999999843211111    1  011110  011111111  11           


Q ss_pred             -------EecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 030848           64 -------EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD  136 (170)
Q Consensus        64 -------~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D  136 (170)
                             +..+..+.++|.||+..+.+..-..++-.|++++|+|.-+.-..+.. ..+.+.+.    ..+.-+++.||+|
T Consensus        87 ~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~----ERIkPvlv~NK~D  161 (842)
T KOG0469|consen   87 KFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIA----ERIKPVLVMNKMD  161 (842)
T ss_pred             HHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHH----hhccceEEeehhh
Confidence                   12245799999999999999888889999999999998765443321 12222222    2444578899999


Q ss_pred             cc---ccCCHHHHHhHhC
Q 030848          137 LP---DAVSADELARYLD  151 (170)
Q Consensus       137 ~~---~~~~~~~~~~~~~  151 (170)
                      -.   -+.+.+++.+.++
T Consensus       162 RAlLELq~~~EeLyqtf~  179 (842)
T KOG0469|consen  162 RALLELQLSQEELYQTFQ  179 (842)
T ss_pred             HHHHhhcCCHHHHHHHHH
Confidence            43   2667777777776

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.98  E-value=1.5e-05  Score=61.42  Aligned_cols=116  Identities=18%  Similarity=0.251  Sum_probs=61.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCC------CCCcc-----------cCCcceeEEEE-----------EecCe
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGL------PPDRI-----------VPTVGLNIGRI-----------EVSNS   68 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~------~~~~~-----------~~~~~~~~~~~-----------~~~~~   68 (170)
                      .-.+.+|||+|+||||-+..+.....-....      +.+.+           ..-.++....+           ...+.
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            5678999999999999998885532200010      00010           11111111111           11356


Q ss_pred             EEEEEEcCCCCcch----hhHHHHhhcc--CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           69 KLVFWDLGGQPGLR----SIWEKYYEEA--HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        69 ~~~i~D~~G~~~~~----~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      .+.++||.|.....    .....+++.+  .-+.+|++++..  .+++.+.+..+... .    .-=+++||.|...
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~-~----i~~~I~TKlDET~  352 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF-P----IDGLIFTKLDETT  352 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC-C----cceeEEEcccccC
Confidence            89999999954432    2333444433  234556666633  45555555555221 1    1257789999643

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=97.97  E-value=4.4e-06  Score=65.58  Aligned_cols=59  Identities=17%  Similarity=0.164  Sum_probs=37.3

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG   77 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   77 (170)
                      ..+..+.|.+||.|++||||.||.|.+........++....   .+  ..+. -...+.+.|+||
T Consensus       310 ~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTK---HF--QTi~-ls~~v~LCDCPG  368 (562)
T KOG1424|consen  310 RYKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTK---HF--QTIF-LSPSVCLCDCPG  368 (562)
T ss_pred             CCCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcc---ee--EEEE-cCCCceecCCCC
Confidence            34456899999999999999999998743332222222111   11  1121 134578999999

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.95  E-value=2.2e-05  Score=58.68  Aligned_cols=76  Identities=24%  Similarity=0.364  Sum_probs=47.6

Q ss_pred             hhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEE
Q 030848           83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMF  162 (170)
Q Consensus        83 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (170)
                      ......+..+|++|+|+|++++.+.+.  ..+....     .+.|+++|+||+|+.+.....+..+.++     ....++
T Consensus        16 ~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~-----~~~~~v   83 (287)
T PRK09563         16 REIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFE-----EQGIKA   83 (287)
T ss_pred             HHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHH-----HcCCeE
Confidence            344556789999999999987754322  1122222     2578999999999965322233333333     123467


Q ss_pred             EeeeccCC
Q 030848          163 EAVSGYDG  170 (170)
Q Consensus       163 ~~~Sa~~g  170 (170)
                      +.+||++|
T Consensus        84 i~vSa~~~   91 (287)
T PRK09563         84 LAINAKKG   91 (287)
T ss_pred             EEEECCCc
Confidence            88898865

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.94  E-value=0.00017  Score=54.65  Aligned_cols=75  Identities=17%  Similarity=0.210  Sum_probs=43.5

Q ss_pred             eEEEEEEcCCCCcchhhHHHHhh--------ccCEEEEEEeCCCcccH-HHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848           68 SKLVFWDLGGQPGLRSIWEKYYE--------EAHAVVFVIDAACPSRF-EDSKTALEKVLRNEDLQGAPLLILANKQDLP  138 (170)
Q Consensus        68 ~~~~i~D~~G~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~  138 (170)
                      ....++.+.|-.+.......++.        ..+.++.|+|+.+-... ........++.. .   +   ++++||+|+.
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~-A---D---~IvlnK~Dl~  163 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY-A---D---RILLTKTDVA  163 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh-C---C---EEEEeccccC
Confidence            45788999997766555544422        25789999998753221 111111222322 2   2   8999999997


Q ss_pred             ccCCHHHHHhHhC
Q 030848          139 DAVSADELARYLD  151 (170)
Q Consensus       139 ~~~~~~~~~~~~~  151 (170)
                      ++.  +.+.+.++
T Consensus       164 ~~~--~~~~~~l~  174 (318)
T PRK11537        164 GEA--EKLRERLA  174 (318)
T ss_pred             CHH--HHHHHHHH
Confidence            642  44444443

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.94  E-value=2.8e-05  Score=57.68  Aligned_cols=63  Identities=22%  Similarity=0.425  Sum_probs=39.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE-EEec-CeEEEEEEcCC
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IEVS-NSKLVFWDLGG   77 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~i~D~~G   77 (170)
                      ..++++.|+|-||+|||||+|++...+-...........|.+...+.. +.+. ...+.++||||
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPG  205 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPG  205 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCC
Confidence            477999999999999999999996533322222222333333332221 3333 34588999999

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.94  E-value=0.00012  Score=56.74  Aligned_cols=115  Identities=16%  Similarity=0.138  Sum_probs=60.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCC------CCCCC---------cccCCcceeEEEEE--------------ecCe
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVE------GLPPD---------RIVPTVGLNIGRIE--------------VSNS   68 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~------~~~~~---------~~~~~~~~~~~~~~--------------~~~~   68 (170)
                      -+|+++|++|+||||++..|........      ..+..         .+....++......              ..+.
T Consensus       242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~  321 (436)
T PRK11889        242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV  321 (436)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCC
Confidence            5799999999999999999954221100      01000         01111122211110              0135


Q ss_pred             EEEEEEcCCCCcc----hhhHHHHhh--ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           69 KLVFWDLGGQPGL----RSIWEKYYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        69 ~~~i~D~~G~~~~----~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      .+.|+||+|....    .......++  ..+-+++|+|++-.  ..++......+.. .    ..-=+++||.|...
T Consensus       322 DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~-~----~idglI~TKLDET~  391 (436)
T PRK11889        322 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-I----HIDGIVFTKFDETA  391 (436)
T ss_pred             CEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC-C----CCCEEEEEcccCCC
Confidence            7999999995332    122223322  35677888887532  2333333333322 1    12367889999755

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.92  E-value=0.00045  Score=42.32  Aligned_cols=97  Identities=22%  Similarity=0.207  Sum_probs=56.3

Q ss_pred             EEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhh-HHHHhhccCEEEEE
Q 030848           20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI-WEKYYEEAHAVVFV   98 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~~~~i~v   98 (170)
                      +++.|..|+||||+...+.......            +.....++    .+.++|+++....... .......+|.++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~------------g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v   65 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKR------------GKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIV   65 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC------------CCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEe
Confidence            5788999999999999996533221            01111122    8899999986544331 13345678999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 030848           99 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN  133 (170)
Q Consensus        99 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~n  133 (170)
                      ++.+... .........+..........+..+++|
T Consensus        66 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vv~N   99 (99)
T cd01983          66 TTPEALA-VLGARRLTEVVLELAIEGLRPVGVVVN   99 (99)
T ss_pred             cCCchhh-HHHHHHHHHHHHHhhccCCceEEEEeC
Confidence            8776443 333333322233332224455555554

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.90  E-value=0.00035  Score=53.01  Aligned_cols=78  Identities=24%  Similarity=0.222  Sum_probs=48.4

Q ss_pred             eEEEEEEcCCCCcchhhHHHHhh--------ccCEEEEEEeCCCcccHHH-HHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848           68 SKLVFWDLGGQPGLRSIWEKYYE--------EAHAVVFVIDAACPSRFED-SKTALEKVLRNEDLQGAPLLILANKQDLP  138 (170)
Q Consensus        68 ~~~~i~D~~G~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~ii~v~nK~D~~  138 (170)
                      ....++.+.|-.........+..        ..|+++-|+|+.+-..... ..+.+..-+...   +   ++++||.|+.
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A---D---~ivlNK~Dlv  158 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA---D---VIVLNKTDLV  158 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC---c---EEEEecccCC
Confidence            46788899996655444443332        3577899999875433221 222222222322   2   9999999999


Q ss_pred             ccCCHHHHHhHhC
Q 030848          139 DAVSADELARYLD  151 (170)
Q Consensus       139 ~~~~~~~~~~~~~  151 (170)
                      ++...+..++.++
T Consensus       159 ~~~~l~~l~~~l~  171 (323)
T COG0523         159 DAEELEALEARLR  171 (323)
T ss_pred             CHHHHHHHHHHHH
Confidence            8776667677666

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.89  E-value=4.7e-05  Score=59.56  Aligned_cols=23  Identities=30%  Similarity=0.268  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .-+++++|++|+||||++..|.+
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~  213 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAA  213 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999998865

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.88  E-value=0.00037  Score=54.91  Aligned_cols=115  Identities=21%  Similarity=0.240  Sum_probs=59.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcc-cCCCC-----CCCcc-----------cCCcceeEEEE-----------EecCeE
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYS-NVEGL-----PPDRI-----------VPTVGLNIGRI-----------EVSNSK   69 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~-~~~~~-----~~~~~-----------~~~~~~~~~~~-----------~~~~~~   69 (170)
                      -.++++|++|+||||++..+..... ...+.     ..+.+           ....++.....           ...+..
T Consensus       222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~D  301 (424)
T PRK05703        222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCD  301 (424)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCC
Confidence            3789999999999999888854322 00000     01110           00011111110           113467


Q ss_pred             EEEEEcCCCCcch----hhHHHHhh---ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           70 LVFWDLGGQPGLR----SIWEKYYE---EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        70 ~~i~D~~G~~~~~----~~~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      +.++||||.....    .....+++   ...-+.+|++++..  ...+...+..+. ..   . +--+++||.|...
T Consensus       302 lVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~-~~---~-~~~vI~TKlDet~  371 (424)
T PRK05703        302 VILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFS-RL---P-LDGLIFTKLDETS  371 (424)
T ss_pred             EEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhC-CC---C-CCEEEEecccccc
Confidence            9999999954332    22333333   23456777887633  233444443332 11   1 2268899999744

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.88  E-value=0.00011  Score=57.42  Aligned_cols=23  Identities=35%  Similarity=0.446  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ...++++|++|+||||++..+..
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~  245 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAA  245 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34688999999999999999864

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.84  E-value=0.00013  Score=40.47  Aligned_cols=45  Identities=22%  Similarity=0.397  Sum_probs=30.5

Q ss_pred             hccCEEEEEEeCCCcc--cHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 030848           90 EEAHAVVFVIDAACPS--RFEDSKTALEKVLRNEDLQGAPLLILANKQD  136 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D  136 (170)
                      +-.++++|++|++..+  +.++....+.++....  .+.|+++|.||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence            4568999999998654  5677777888887654  4899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>TIGR00959 ffh signal recognition particle protein

Probab=97.83  E-value=0.00083  Score=52.90  Aligned_cols=66  Identities=14%  Similarity=0.114  Sum_probs=37.7

Q ss_pred             CeEEEEEEcCCCCcc----hhhHHHH--hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           67 NSKLVFWDLGGQPGL----RSIWEKY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        67 ~~~~~i~D~~G~~~~----~~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      +..+.|+||||....    ......+  .-..+.+++|+|+...   ++.......+.....    ..=+++||.|...
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v~----i~giIlTKlD~~~  253 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERLG----LTGVVLTKLDGDA  253 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhCC----CCEEEEeCccCcc
Confidence            356999999995332    1212111  2247888999998643   444444444432221    2356789999643

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.81  E-value=0.00012  Score=56.46  Aligned_cols=23  Identities=35%  Similarity=0.345  Sum_probs=19.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .-.++++|++|+||||++..+..
T Consensus       206 ~~ii~lvGptGvGKTTt~akLA~  228 (407)
T PRK12726        206 HRIISLIGQTGVGKTTTLVKLGW  228 (407)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999998853

>PRK10867 signal recognition particle protein; Provisional

Probab=97.81  E-value=0.00029  Score=55.45  Aligned_cols=66  Identities=14%  Similarity=0.121  Sum_probs=36.7

Q ss_pred             CeEEEEEEcCCCCcc----hhhHHHHh--hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           67 NSKLVFWDLGGQPGL----RSIWEKYY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        67 ~~~~~i~D~~G~~~~----~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      +..+.|+||+|.-..    ......+.  -..+.+++|+|+...   ++.......+.....    .--+++||.|...
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~~----i~giIlTKlD~~~  254 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEALG----LTGVILTKLDGDA  254 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhCC----CCEEEEeCccCcc
Confidence            357999999994432    22222221  246778999997643   344444444432211    2356779999643

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.80  E-value=0.00089  Score=43.96  Aligned_cols=32  Identities=25%  Similarity=0.295  Sum_probs=24.5

Q ss_pred             HHhhhccCceeEEEEEcCCCCChHHHHHHHHh
Q 030848            8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus         8 ~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +...........++++|++|+|||++++.+..
T Consensus        10 i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~   41 (151)
T cd00009          10 LREALELPPPKNLLLYGPPGTGKTTLARAIAN   41 (151)
T ss_pred             HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            33333343456799999999999999999976

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.79  E-value=0.0003  Score=53.86  Aligned_cols=77  Identities=17%  Similarity=0.240  Sum_probs=47.8

Q ss_pred             eEEEEEEcCCCCcchhhHHHHh-------hccCEEEEEEeCCCccc--H--------------------HHHHHH-HHHH
Q 030848           68 SKLVFWDLGGQPGLRSIWEKYY-------EEAHAVVFVIDAACPSR--F--------------------EDSKTA-LEKV  117 (170)
Q Consensus        68 ~~~~i~D~~G~~~~~~~~~~~~-------~~~~~~i~v~d~~~~~~--~--------------------~~~~~~-~~~~  117 (170)
                      ....++.+.|-.........+.       -..++++.|+|+.+-..  +                    ...... ..++
T Consensus        93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi  172 (341)
T TIGR02475        93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL  172 (341)
T ss_pred             CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence            4678999999776655554431       14678999999864211  0                    001111 1222


Q ss_pred             HcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC
Q 030848          118 LRNEDLQGAPLLILANKQDLPDAVSADELARYLD  151 (170)
Q Consensus       118 ~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~  151 (170)
                       ...      =++++||+|+.++...+++.+.++
T Consensus       173 -~~A------D~IvlnK~Dl~~~~~l~~~~~~l~  199 (341)
T TIGR02475       173 -ACA------DLVILNKADLLDAAGLARVRAEIA  199 (341)
T ss_pred             -HhC------CEEEEeccccCCHHHHHHHHHHHH
Confidence             222      289999999988777777777665

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.77  E-value=5.4e-05  Score=49.50  Aligned_cols=22  Identities=36%  Similarity=0.490  Sum_probs=17.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      --+++.|++|+|||++++.+..
T Consensus         5 ~~~~i~G~~G~GKT~~~~~~~~   26 (131)
T PF13401_consen    5 RILVISGPPGSGKTTLIKRLAR   26 (131)
T ss_dssp             --EEEEE-TTSSHHHHHHHHHH
T ss_pred             cccEEEcCCCCCHHHHHHHHHH
Confidence            3578999999999999999976

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.75  E-value=0.0001  Score=63.99  Aligned_cols=115  Identities=17%  Similarity=0.182  Sum_probs=63.7

Q ss_pred             EEEEcCCCCChHHHHHHHHhhc--ccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC----C----CcchhhHHHHh
Q 030848           20 VLILGIDKAGKTTLLEKLKSVY--SNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----Q----PGLRSIWEKYY   89 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----~----~~~~~~~~~~~   89 (170)
                      .+|||++|+||||++..-....  ....+........|..|++    +....-.++||.|    +    +.....|..++
T Consensus       128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdw----wf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL  203 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDW----WFTDEAVLIDTAGRYITQDSADEVDRAEWLGFL  203 (1188)
T ss_pred             eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCc----ccccceEEEcCCcceecccCcchhhHHHHHHHH
Confidence            5799999999999987652200  0000000001111222211    2334578889999    2    23344565442


Q ss_pred             ---------hccCEEEEEEeCCCccc----H-----HHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           90 ---------EEAHAVVFVIDAACPSR----F-----EDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        90 ---------~~~~~~i~v~d~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                               +-.|+||+.+|+.+--+    .     ..++.-+.++..... -..|+.+++||.|+..
T Consensus       204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~-~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH-ARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc-cCCceEEEEecccccc
Confidence                     34899999998853211    1     112223334433332 4689999999999965

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.75  E-value=0.00066  Score=45.20  Aligned_cols=102  Identities=14%  Similarity=0.199  Sum_probs=60.5

Q ss_pred             EEEcCCCCChHHHHHHHHhhcccCCCC----CCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEE
Q 030848           21 LILGIDKAGKTTLLEKLKSVYSNVEGL----PPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVV   96 (170)
Q Consensus        21 ~vvG~~~~GKSsl~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   96 (170)
                      +.-|.+|+|||++.-.+..........    ..+...+..          +..+.++|+|+.....  ....+..+|.++
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~----------~yd~VIiD~p~~~~~~--~~~~l~~aD~vv   71 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL----------DYDYIIIDTGAGISDN--VLDFFLAADEVI   71 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC----------CCCEEEEECCCCCCHH--HHHHHHhCCeEE
Confidence            355778999999977774422211100    000000010          1678999999854332  345678999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 030848           97 FVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL  137 (170)
Q Consensus        97 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~  137 (170)
                      ++.+.+. .++..+...+..+....  ...++.+++|+.+-
T Consensus        72 iv~~~~~-~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~  109 (139)
T cd02038          72 VVTTPEP-TSITDAYALIKKLAKQL--RVLNFRVVVNRAES  109 (139)
T ss_pred             EEcCCCh-hHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence            9998763 34444444444443322  35678899999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.73  E-value=0.00038  Score=54.94  Aligned_cols=117  Identities=19%  Similarity=0.250  Sum_probs=60.4

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCC----CCCCcccC-----------CcceeEEEE---------------Ee
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG----LPPDRIVP-----------TVGLNIGRI---------------EV   65 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~----~~~~~~~~-----------~~~~~~~~~---------------~~   65 (170)
                      +...|+++|.+|+||||.+..+.........    ...+.+.+           ..++.....               ..
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~  173 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF  173 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence            3567899999999999999888432221100    00001100           111111110               00


Q ss_pred             cCeEEEEEEcCCCCcchhh----HHHH--hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           66 SNSKLVFWDLGGQPGLRSI----WEKY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        66 ~~~~~~i~D~~G~~~~~~~----~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      ....+.|+||+|.......    ....  .-.+|.+++|+|++..   ++.......+....    ...-+++||.|...
T Consensus       174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g---q~av~~a~~F~~~l----~i~gvIlTKlD~~a  246 (437)
T PRK00771        174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG---QQAKNQAKAFHEAV----GIGGIIITKLDGTA  246 (437)
T ss_pred             hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc---HHHHHHHHHHHhcC----CCCEEEEecccCCC
Confidence            1347999999995543221    1111  2357889999998754   22222233322211    12356779998643

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.71  E-value=3.7e-05  Score=49.68  Aligned_cols=21  Identities=33%  Similarity=0.507  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +|+|.|++||||||+.+.+..
T Consensus         1 vI~I~G~~gsGKST~a~~La~   21 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAE   21 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999976

...

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.71  E-value=0.00037  Score=54.19  Aligned_cols=103  Identities=19%  Similarity=0.242  Sum_probs=56.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC-----CCccc-----------CCcceeEEEEE-------------
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP-----PDRIV-----------PTVGLNIGRIE-------------   64 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~-----~~~~~-----------~~~~~~~~~~~-------------   64 (170)
                      .++...|+++|-.||||||.+-.+...... .+..     .+.+.           ..+++.++...             
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al  175 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAAL  175 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHH
Confidence            345678999999999999998887443222 1110     01111           12222222111             


Q ss_pred             ----ecCeEEEEEEcCCCCcchhhH----HH--HhhccCEEEEEEeCCCcccHHHHHHHHHHH
Q 030848           65 ----VSNSKLVFWDLGGQPGLRSIW----EK--YYEEAHAVVFVIDAACPSRFEDSKTALEKV  117 (170)
Q Consensus        65 ----~~~~~~~i~D~~G~~~~~~~~----~~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~  117 (170)
                          .....+.|+||+|.-......    ..  -.-+.|=+|+|+|+.-...-.+....|.+-
T Consensus       176 ~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~  238 (451)
T COG0541         176 EKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEA  238 (451)
T ss_pred             HHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhh
Confidence                123479999999954443211    11  123578899999987554333444444433

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.68  E-value=0.0006  Score=53.01  Aligned_cols=116  Identities=18%  Similarity=0.227  Sum_probs=61.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccC---CCC-----CCCc-----------ccCCcceeEEEEE-----------ec
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNV---EGL-----PPDR-----------IVPTVGLNIGRIE-----------VS   66 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~---~~~-----~~~~-----------~~~~~~~~~~~~~-----------~~   66 (170)
                      .-.++++|++|+||||.+..+.......   .+.     ..+.           +....++.+....           ..
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~  253 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK  253 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence            3578999999999999998885432210   000     0000           1111222222111           13


Q ss_pred             CeEEEEEEcCCCCcch----hhHHHHhhcc--C-EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           67 NSKLVFWDLGGQPGLR----SIWEKYYEEA--H-AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        67 ~~~~~i~D~~G~~~~~----~~~~~~~~~~--~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      +..+.++||+|.....    .....+++..  + -+++|+|++..  ...+.+.+..+...     .+-=+++||.|...
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~-----~~~~~I~TKlDet~  326 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF-----SYKTVIFTKLDETT  326 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC-----CCCEEEEEeccCCC
Confidence            5689999999943221    1222333322  2 57889998754  33444444444211     12357788888643

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.63  E-value=0.0007  Score=47.01  Aligned_cols=25  Identities=28%  Similarity=0.274  Sum_probs=21.6

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      +.-.++++|+.|+|||||++.+.+.
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   48 (177)
T cd03222          24 EGEVIGIVGPNGTGKTTAVKILAGQ   48 (177)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcC
Confidence            3447899999999999999999873

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.61  E-value=0.0019  Score=40.88  Aligned_cols=100  Identities=18%  Similarity=0.147  Sum_probs=56.4

Q ss_pred             EcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE-ecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeC
Q 030848           23 LGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE-VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDA  101 (170)
Q Consensus        23 vG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~  101 (170)
                      =+..|+||||..-.+........+... ..     +   ..+ .....+.++|+|+.....  ....+..+|.++++.+.
T Consensus         6 ~~kgg~gkt~~~~~la~~~~~~~~~~~-~l-----~---d~d~~~~~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~   74 (106)
T cd03111           6 GAKGGVGATTLAANLAVALAKEAGRRV-LL-----V---DLDLQFGDDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQ   74 (106)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhcCCCcE-EE-----E---ECCCCCCCCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecC
Confidence            355789999998777543222110000 00     0   000 011278999999865433  33456889999999976


Q ss_pred             CCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 030848          102 ACPSRFEDSKTALEKVLRNEDLQGAPLLILANK  134 (170)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK  134 (170)
                      +. .+..........+......+..++.+++|+
T Consensus        75 ~~-~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          75 DL-PSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             Ch-HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            63 345555555555543322114567788875

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.61  E-value=0.00024  Score=59.33  Aligned_cols=23  Identities=30%  Similarity=0.278  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      -.++++|+.|+||||.+..|...
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~  208 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAAR  208 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhh
Confidence            36889999999999999999653

>PRK08118 topology modulation protein; Reviewed

Probab=97.61  E-value=5.9e-05  Score=51.88  Aligned_cols=22  Identities=27%  Similarity=0.536  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .||+|+|++|||||||...+..
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~   23 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGE   23 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999965

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.60  E-value=0.0035  Score=43.11  Aligned_cols=66  Identities=9%  Similarity=0.000  Sum_probs=43.3

Q ss_pred             EEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030848           69 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA  140 (170)
Q Consensus        69 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~  140 (170)
                      .+.++|+|+.....  ....+..+|.+|++++++. .+...+......+...   ......+++|+.|....
T Consensus        64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~~  129 (179)
T cd02036          64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDMV  129 (179)
T ss_pred             CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc---CCceEEEEEeCCccccc
Confidence            79999999865433  3344688999999998764 3445554544444331   23457789999987543

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.60  E-value=5.8e-05  Score=52.45  Aligned_cols=22  Identities=50%  Similarity=0.706  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +||+++|+|||||||+.+.|..
T Consensus         1 ~riiilG~pGaGK~T~A~~La~   22 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAK   22 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999976

>PRK07261 topology modulation protein; Provisional

Probab=97.59  E-value=6.2e-05  Score=51.98  Aligned_cols=22  Identities=36%  Similarity=0.634  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .+|+|+|++|||||||...+..
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3799999999999999999865

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.58  E-value=7.8e-05  Score=42.37  Aligned_cols=21  Identities=38%  Similarity=0.648  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..++.|+.||||||++.++.-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999954

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.58  E-value=0.0015  Score=41.00  Aligned_cols=81  Identities=19%  Similarity=0.269  Sum_probs=48.4

Q ss_pred             EEEEc-CCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec-CeEEEEEEcCCCCcchhhHHHHhhccCEEEE
Q 030848           20 VLILG-IDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF   97 (170)
Q Consensus        20 i~vvG-~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   97 (170)
                      |.+.| ..|+||||+...+...... .+.           ....++.. ...+.++|+|+......  ...+..+|.+++
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~-----------~vl~~d~d~~~d~viiD~p~~~~~~~--~~~l~~ad~viv   67 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-RGK-----------RVLLIDLDPQYDYIIIDTPPSLGLLT--RNALAAADLVLI   67 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-CCC-----------cEEEEeCCCCCCEEEEeCcCCCCHHH--HHHHHHCCEEEE
Confidence            45666 5689999998888543221 110           01111111 15789999998654432  256688999999


Q ss_pred             EEeCCCcccHHHHHHHHH
Q 030848           98 VIDAACPSRFEDSKTALE  115 (170)
Q Consensus        98 v~d~~~~~~~~~~~~~~~  115 (170)
                      +++.+ ..++........
T Consensus        68 ~~~~~-~~s~~~~~~~~~   84 (104)
T cd02042          68 PVQPS-PLDLDGLEKLLE   84 (104)
T ss_pred             eccCC-HHHHHHHHHHHH
Confidence            99775 334455444443

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.57  E-value=7.3e-05  Score=53.63  Aligned_cols=22  Identities=41%  Similarity=0.578  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      -+.++|++|||||||+|.+.+.
T Consensus        33 ~vaI~GpSGSGKSTLLniig~l   54 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGL   54 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            4789999999999999999764

>PF05729 NACHT: NACHT domain

Probab=97.53  E-value=0.00039  Score=47.10  Aligned_cols=20  Identities=45%  Similarity=0.591  Sum_probs=18.3

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 030848           20 VLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ++|.|++|+|||+++..+..
T Consensus         3 l~I~G~~G~GKStll~~~~~   22 (166)
T PF05729_consen    3 LWISGEPGSGKSTLLRKLAQ   22 (166)
T ss_pred             EEEECCCCCChHHHHHHHHH
Confidence            68999999999999999865

>PRK01889 GTPase RsgA; Reviewed

Probab=97.52  E-value=0.00055  Score=52.79  Aligned_cols=73  Identities=22%  Similarity=0.186  Sum_probs=44.5

Q ss_pred             hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      ..++|.+++|++++.+-....+..++.....    .+.+.++|+||+|+.+.  .++..+.+...   ....+++.+|++
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~--~~~~~~~~~~~---~~g~~Vi~vSa~  180 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCED--AEEKIAEVEAL---APGVPVLAVSAL  180 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCC--HHHHHHHHHHh---CCCCcEEEEECC
Confidence            5788999999999744333333333333222    46677899999999754  22222222211   335678999998


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       181 ~g  182 (356)
T PRK01889        181 DG  182 (356)
T ss_pred             CC
Confidence            75

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.51  E-value=0.00021  Score=54.83  Aligned_cols=63  Identities=27%  Similarity=0.286  Sum_probs=46.2

Q ss_pred             HHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC
Q 030848           86 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD  151 (170)
Q Consensus        86 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~  151 (170)
                      ...+..+|+||.|+|+.+|.+-.. .+.-..+++..  .+...|+|+||+|+.+.+..+....++.
T Consensus       141 rkvve~sDVVleVlDARDPlgtR~-~~vE~~V~~~~--gnKkLILVLNK~DLVPrEv~e~Wl~YLr  203 (435)
T KOG2484|consen  141 RKVVEASDVVLEVLDARDPLGTRC-PEVEEAVLQAH--GNKKLILVLNKIDLVPREVVEKWLVYLR  203 (435)
T ss_pred             HHHHhhhheEEEeeeccCCCCCCC-hhHHHHHHhcc--CCceEEEEeehhccCCHHHHHHHHHHHH
Confidence            334567999999999999865321 22222333322  3578999999999999999999999988

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.49  E-value=0.0001  Score=48.99  Aligned_cols=20  Identities=30%  Similarity=0.579  Sum_probs=18.5

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 030848           20 VLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~   39 (170)
                      |+++|++|||||||++.+..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999999974

...

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.46  E-value=0.00032  Score=55.91  Aligned_cols=23  Identities=30%  Similarity=0.268  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      -.++++|++|+||||.+..|...
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~~  279 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAAR  279 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHHH
Confidence            46899999999999999999653

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.46  E-value=0.00045  Score=51.14  Aligned_cols=116  Identities=16%  Similarity=0.121  Sum_probs=61.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccC------CCCCCC---------cccCCcceeEEEE--------------EecC
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNV------EGLPPD---------RIVPTVGLNIGRI--------------EVSN   67 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~------~~~~~~---------~~~~~~~~~~~~~--------------~~~~   67 (170)
                      .-+++++|++|+||||++..+.......      ......         .+....+......              ...+
T Consensus        75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~  154 (270)
T PRK06731         75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR  154 (270)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence            3689999999999999998885432110      000000         1111122221110              0124


Q ss_pred             eEEEEEEcCCCCcc----hhhHHHHh--hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           68 SKLVFWDLGGQPGL----RSIWEKYY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        68 ~~~~i~D~~G~~~~----~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      ..+.++||||....    ...+..++  ...+-+++|+|++..  .++.......+..     -.+-=+++||.|...
T Consensus       155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~-----~~~~~~I~TKlDet~  225 (270)
T PRK06731        155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETA  225 (270)
T ss_pred             CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC-----CCCCEEEEEeecCCC
Confidence            68999999995432    22222222  235678889987632  2333344333321     122367889999755

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.46  E-value=0.00011  Score=52.09  Aligned_cols=22  Identities=41%  Similarity=0.534  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      =.++++|++|||||||+.++-+
T Consensus        29 evv~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126          29 EVVVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             CEEEEECCCCCCHHHHHHHHHC
Confidence            3678999999999999999954

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.43  E-value=0.00017  Score=55.50  Aligned_cols=34  Identities=21%  Similarity=0.342  Sum_probs=27.5

Q ss_pred             HHHHhhhccCceeEEEEEcCCCCChHHHHHHHHh
Q 030848            6 YGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus         6 ~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .++=..-..++.+.+.+||.|++||||++|.|..
T Consensus       296 RQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~  329 (572)
T KOG2423|consen  296 RQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRK  329 (572)
T ss_pred             HHHHhhccCccceeeeeecCCCCchHHHHHHHhh
Confidence            3333334467899999999999999999999975

>PRK13796 GTPase YqeH; Provisional

Probab=97.42  E-value=0.0002  Score=55.36  Aligned_cols=81  Identities=21%  Similarity=0.239  Sum_probs=44.6

Q ss_pred             cchhhHHHHhhccC-EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc-CCHHHHHhHhC----cc
Q 030848           80 GLRSIWEKYYEEAH-AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA-VSADELARYLD----LK  153 (170)
Q Consensus        80 ~~~~~~~~~~~~~~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~-~~~~~~~~~~~----~~  153 (170)
                      .+....... ...+ .+++|+|+.+...  .   |...+....  .+.|+++|+||+|+.+. ...+++.+.++    ..
T Consensus        58 ~~~~~l~~i-~~~~~lIv~VVD~~D~~~--s---~~~~L~~~~--~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~  129 (365)
T PRK13796         58 DFLKLLNGI-GDSDALVVNVVDIFDFNG--S---WIPGLHRFV--GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKEL  129 (365)
T ss_pred             HHHHHHHhh-cccCcEEEEEEECccCCC--c---hhHHHHHHh--CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhc
Confidence            344444333 4445 8999999987531  1   111222211  25689999999999753 23333333322    11


Q ss_pred             ccccceeEEEeeeccCC
Q 030848          154 KLDERVCMFEAVSGYDG  170 (170)
Q Consensus       154 ~~~~~~~~~~~~Sa~~g  170 (170)
                      +.  ....++.+||++|
T Consensus       130 g~--~~~~v~~vSAk~g  144 (365)
T PRK13796        130 GL--RPVDVVLISAQKG  144 (365)
T ss_pred             CC--CcCcEEEEECCCC
Confidence            11  1125788999875

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.42  E-value=0.0019  Score=48.34  Aligned_cols=113  Identities=14%  Similarity=0.229  Sum_probs=64.5

Q ss_pred             HHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC-------
Q 030848            7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-------   79 (170)
Q Consensus         7 ~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------   79 (170)
                      .++.+=.+....+++++|++|-|||++++++...++...+..                ....++..+.+|...       
T Consensus        51 ~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~----------------~~~~PVv~vq~P~~p~~~~~Y~  114 (302)
T PF05621_consen   51 ELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED----------------AERIPVVYVQMPPEPDERRFYS  114 (302)
T ss_pred             HHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC----------------CccccEEEEecCCCCChHHHHH
Confidence            444443344556899999999999999999987443322110                011244455555411       


Q ss_pred             -----------------cchhhHHHHhhccCEEEEEEeCCC---cccHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 030848           80 -----------------GLRSIWEKYYEEAHAVVFVIDAAC---PSRFEDSKTALEKVLRNEDLQGAPLLILANKQ  135 (170)
Q Consensus        80 -----------------~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~  135 (170)
                                       .........++...+=++++|=-.   ..+....+..+..+......-+.|+|.++++-
T Consensus       115 ~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~  190 (302)
T PF05621_consen  115 AILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE  190 (302)
T ss_pred             HHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence                             112233356678888899997532   12233333333333333333578999998753

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.41  E-value=0.00031  Score=53.93  Aligned_cols=57  Identities=26%  Similarity=0.307  Sum_probs=35.5

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG   77 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   77 (170)
                      ++.+++.|+|-|++||||++|++.....=..+..+   .-|..+   ..-.-+..+.++|.||
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~p---GvT~sm---qeV~Ldk~i~llDsPg  306 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVP---GVTRSM---QEVKLDKKIRLLDSPG  306 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCCCCc---cchhhh---hheeccCCceeccCCc
Confidence            57799999999999999999999651110000000   011111   1122356789999999

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.41  E-value=0.00018  Score=41.93  Aligned_cols=20  Identities=35%  Similarity=0.498  Sum_probs=18.7

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 030848           20 VLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~   39 (170)
                      |+++|++|+||||+.+.+..
T Consensus         2 i~i~G~~gsGKst~~~~l~~   21 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAE   21 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999999976

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.40  E-value=0.00016  Score=52.32  Aligned_cols=28  Identities=36%  Similarity=0.501  Sum_probs=22.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCC
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEG   46 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~   46 (170)
                      -+.++|++|+|||||++.+.+......+
T Consensus        31 fvsilGpSGcGKSTLLriiAGL~~p~~G   58 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGLEKPTSG   58 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3689999999999999999875444433

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=97.39  E-value=0.00033  Score=50.48  Aligned_cols=69  Identities=19%  Similarity=0.063  Sum_probs=37.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHH
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWE   86 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   86 (170)
                      -.+.++|++|||||||.+.+.+...+..+.-.-.-.+.....-.......+++.+-|-.+.-+.+....
T Consensus        34 e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~  102 (252)
T COG1124          34 ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVG  102 (252)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHH
Confidence            468899999999999999998744433322110000000000001224556677777777444443333

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.37  E-value=0.00011  Score=50.12  Aligned_cols=21  Identities=43%  Similarity=0.632  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ||+|+|.+++|||||++.|..
T Consensus         1 rI~i~G~~stGKTTL~~~L~~   21 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAA   21 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999976

>PRK06217 hypothetical protein; Validated

Probab=97.36  E-value=0.00019  Score=50.02  Aligned_cols=22  Identities=32%  Similarity=0.412  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .+|+|+|.+||||||+..+|..
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~   23 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAE   23 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999965

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.36  E-value=0.00077  Score=51.78  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=19.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .--|.++|-.|+||||.+-.+..
T Consensus       101 psVimfVGLqG~GKTTtc~KlA~  123 (483)
T KOG0780|consen  101 PSVIMFVGLQGSGKTTTCTKLAY  123 (483)
T ss_pred             CcEEEEEeccCCCcceeHHHHHH
Confidence            34578999999999999988844

>PRK01889 GTPase RsgA; Reviewed

Probab=97.33  E-value=0.00031  Score=54.14  Aligned_cols=23  Identities=35%  Similarity=0.439  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      -+++++|.+|+|||||+|.+.+.
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~  218 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGE  218 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHh
Confidence            47899999999999999999764

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.32  E-value=0.00021  Score=47.16  Aligned_cols=22  Identities=41%  Similarity=0.527  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -.++|+|+.|+|||||++.+.+
T Consensus        12 ~~~~i~G~nGsGKStLl~~l~g   33 (137)
T PF00005_consen   12 EIVAIVGPNGSGKSTLLKALAG   33 (137)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTT
T ss_pred             CEEEEEccCCCccccceeeecc
Confidence            3679999999999999999977

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=97.31  E-value=0.00066  Score=53.76  Aligned_cols=70  Identities=24%  Similarity=0.267  Sum_probs=54.3

Q ss_pred             hhccCEEEEEEeCCCcccHH--HHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeee
Q 030848           89 YEEAHAVVFVIDAACPSRFE--DSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVS  166 (170)
Q Consensus        89 ~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  166 (170)
                      +..+|+|+.++|+.+|--|.  ++..+....     .+....+++.||+||..+.......+++.     .+.++++..|
T Consensus       172 lErSDivvqIVDARnPllfr~~dLe~Yvke~-----d~~K~~~LLvNKaDLl~~~qr~aWa~YF~-----~~ni~~vf~S  241 (562)
T KOG1424|consen  172 LERSDIVVQIVDARNPLLFRSPDLEDYVKEV-----DPSKANVLLVNKADLLPPEQRVAWAEYFR-----QNNIPVVFFS  241 (562)
T ss_pred             HhhcceEEEEeecCCccccCChhHHHHHhcc-----ccccceEEEEehhhcCCHHHHHHHHHHHH-----hcCceEEEEe
Confidence            46899999999999997663  333332222     13466899999999999999999999998     6668898888


Q ss_pred             cc
Q 030848          167 GY  168 (170)
Q Consensus       167 a~  168 (170)
                      |+
T Consensus       242 A~  243 (562)
T KOG1424|consen  242 AL  243 (562)
T ss_pred             cc
Confidence            86

>PRK03839 putative kinase; Provisional

Probab=97.31  E-value=0.00023  Score=49.40  Aligned_cols=21  Identities=33%  Similarity=0.384  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +|+++|.+||||||+.+.+..
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~   22 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAE   22 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999955

>TIGR00235 udk uridine kinase

Probab=97.28  E-value=0.00032  Score=49.86  Aligned_cols=27  Identities=26%  Similarity=0.211  Sum_probs=22.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .++...|+++|++|||||||++.+.+.
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            345677999999999999999999754

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.27  E-value=0.00028  Score=48.62  Aligned_cols=22  Identities=45%  Similarity=0.626  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      +|++.|++|+||||+++++...
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~   22 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEE   22 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHH
Confidence            6899999999999999999663

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.27  E-value=0.00027  Score=49.02  Aligned_cols=21  Identities=48%  Similarity=0.591  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .+.++|++|+|||||+|-+.+
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAG   47 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAG   47 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHh
Confidence            678999999999999999966

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.25  E-value=0.00035  Score=49.69  Aligned_cols=27  Identities=26%  Similarity=0.246  Sum_probs=23.4

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      ..+...|++.|++|||||||.+.|...
T Consensus         3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          3 MKKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            346788999999999999999999664

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.23  E-value=0.0003  Score=49.15  Aligned_cols=22  Identities=27%  Similarity=0.522  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .++++|++|+||||+++.+...
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5889999999999999999653

>PRK14530 adenylate kinase; Provisional

Probab=97.22  E-value=0.00032  Score=50.21  Aligned_cols=22  Identities=36%  Similarity=0.447  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .+|+++|++||||||+.+.|..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999954

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.21  E-value=0.00034  Score=45.36  Aligned_cols=21  Identities=38%  Similarity=0.495  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChHHHHHHHHhh
Q 030848           20 VLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      |+|.|.+||||||+.+.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999653

...

>PRK06547 hypothetical protein; Provisional

Probab=97.21  E-value=0.00068  Score=46.87  Aligned_cols=28  Identities=36%  Similarity=0.366  Sum_probs=23.5

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHHh
Q 030848           12 IFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        12 ~~~~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ........|+|.|++||||||+.+.+..
T Consensus        10 ~~~~~~~~i~i~G~~GsGKTt~a~~l~~   37 (172)
T PRK06547         10 LCGGGMITVLIDGRSGSGKTTLAGALAA   37 (172)
T ss_pred             hhcCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3455677888999999999999999965

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.21  E-value=0.00054  Score=47.39  Aligned_cols=56  Identities=23%  Similarity=0.262  Sum_probs=34.4

Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD  151 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~  151 (170)
                      |++++|+|+.++.+-.. ......+ . ....+.|+++++||+|+.++....+..+.++
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~-~-l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~   56 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAV-L-QAGGNKKLVLVLNKIDLVPKENVEKWLKYLR   56 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHH-H-hccCCCCEEEEEehhhcCCHHHHHHHHHHHH
Confidence            78999999988643221 1111121 1 1113579999999999976555555555554

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PRK08233 hypothetical protein; Provisional

Probab=97.20  E-value=0.00041  Score=47.99  Aligned_cols=24  Identities=33%  Similarity=0.397  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      ..-|++.|.+||||||+.+.+...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            467889999999999999999653

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.20  E-value=0.00034  Score=46.50  Aligned_cols=21  Identities=33%  Similarity=0.556  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChHHHHHHHHhh
Q 030848           20 VLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      |+++|++|+||||+++.+...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999764

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.20  E-value=0.00033  Score=48.51  Aligned_cols=22  Identities=32%  Similarity=0.507  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .++++|++||||||+.+.+...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999663

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.18  E-value=0.00039  Score=45.30  Aligned_cols=20  Identities=40%  Similarity=0.537  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 030848           20 VLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~   39 (170)
                      |++.|++|+|||++++.+..
T Consensus         1 ill~G~~G~GKT~l~~~la~   20 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQ   20 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHh
Confidence            68999999999999999987

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.17  E-value=0.00039  Score=49.73  Aligned_cols=25  Identities=36%  Similarity=0.417  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYS   42 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~   42 (170)
                      -.++++|+.|+|||||++.+.+...
T Consensus        31 ~~~~l~G~nGsGKSTLl~~i~Gl~~   55 (218)
T cd03255          31 EFVAIVGPSGSGKSTLLNILGGLDR   55 (218)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCcC
Confidence            3678999999999999999987533

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.17  E-value=0.00042  Score=49.28  Aligned_cols=24  Identities=42%  Similarity=0.591  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      -.++++|+.|+|||||++.+.+..
T Consensus        28 ~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          28 EFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            357899999999999999998743

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.17  E-value=0.00041  Score=49.58  Aligned_cols=24  Identities=29%  Similarity=0.437  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      -.++++|+.|+|||||++.+.+..
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        30 EMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999998743

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.17  E-value=0.0004  Score=50.83  Aligned_cols=25  Identities=36%  Similarity=0.438  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhccc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSN   43 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~   43 (170)
                      -++++|+.|+|||||++++.+....
T Consensus        30 i~~iiGpNG~GKSTLLk~l~g~l~p   54 (258)
T COG1120          30 ITGILGPNGSGKSTLLKCLAGLLKP   54 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhccCCC
Confidence            4689999999999999999774443

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.17  E-value=0.00086  Score=48.46  Aligned_cols=26  Identities=38%  Similarity=0.369  Sum_probs=22.6

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .+..-+++.|++|||||||++.+.+.
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~   56 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEAL   56 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999654

>PRK14532 adenylate kinase; Provisional

Probab=97.16  E-value=0.00041  Score=48.47  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ++|+++|+|||||||+..++..
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999954

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=97.15  E-value=0.00046  Score=48.89  Aligned_cols=24  Identities=29%  Similarity=0.329  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      =.++++|+.|+|||||++.+.+..
T Consensus        25 e~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        25 KMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            358999999999999999998743

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.15  E-value=0.00038  Score=49.05  Aligned_cols=21  Identities=33%  Similarity=0.377  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChHHHHHHHHhh
Q 030848           20 VLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      |+++|++|||||||.+.+...
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999664

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.15  E-value=0.00045  Score=48.98  Aligned_cols=24  Identities=33%  Similarity=0.378  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      -.++++|+.|+|||||++.+.+..
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          27 EIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            468999999999999999998743

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=97.15  E-value=0.003  Score=48.42  Aligned_cols=26  Identities=31%  Similarity=0.401  Sum_probs=23.0

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      +...+|+|+|++|||||||++.+...
T Consensus       160 ~~~~nilI~G~tGSGKTTll~aLl~~  185 (344)
T PRK13851        160 VGRLTMLLCGPTGSGKTTMSKTLISA  185 (344)
T ss_pred             HcCCeEEEECCCCccHHHHHHHHHcc
Confidence            35678999999999999999999764

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=97.15  E-value=0.00038  Score=49.55  Aligned_cols=23  Identities=39%  Similarity=0.470  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      .++++|+.|+|||||++.+.+..
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCC
Confidence            88999999999999999998743

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.14  E-value=0.00044  Score=50.07  Aligned_cols=24  Identities=29%  Similarity=0.407  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      -.++++|+.|+|||||++.+.+..
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          27 EILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            357899999999999999998743

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.14  E-value=0.00047  Score=48.28  Aligned_cols=23  Identities=39%  Similarity=0.599  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      .++++|+.|+|||||++.+.+..
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999998743

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.14  E-value=0.00046  Score=44.92  Aligned_cols=22  Identities=41%  Similarity=0.475  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -.++++|++|+|||+++..+..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~   24 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALAR   24 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHh
Confidence            4689999999999999999976

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.14  E-value=0.00046  Score=49.21  Aligned_cols=24  Identities=38%  Similarity=0.437  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      -.++++|+.|+|||||++.+.+..
T Consensus        29 ~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        29 EFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            368899999999999999998743

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=97.13  E-value=0.0005  Score=49.25  Aligned_cols=25  Identities=36%  Similarity=0.408  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYS   42 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~   42 (170)
                      -.++++|+.|+|||||++.+.+...
T Consensus        32 ~~~~i~G~nGsGKSTLl~~i~G~~~   56 (221)
T TIGR02211        32 EIVAIVGSSGSGKSTLLHLLGGLDN   56 (221)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3678999999999999999987533

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=97.13  E-value=0.00049  Score=48.94  Aligned_cols=24  Identities=29%  Similarity=0.317  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      =.++++|+.|+|||||++.+.+..
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          27 EIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            357899999999999999998743

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=97.13  E-value=0.0005  Score=49.71  Aligned_cols=25  Identities=28%  Similarity=0.315  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYS   42 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~   42 (170)
                      =.++++|+.|+|||||++.+.+..+
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~G~~~   56 (233)
T cd03258          32 EIFGIIGRSGAGKSTLIRCINGLER   56 (233)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4688999999999999999987543

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13949 shikimate kinase; Provisional

Probab=97.13  E-value=0.00048  Score=47.45  Aligned_cols=21  Identities=38%  Similarity=0.526  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +|+++|++|+||||+...+..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998865

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=97.13  E-value=0.0005  Score=49.03  Aligned_cols=24  Identities=33%  Similarity=0.422  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      -.++++|+.|+|||||++.+.+..
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          27 EFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            358899999999999999998743

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=97.12  E-value=0.0071  Score=43.99  Aligned_cols=28  Identities=25%  Similarity=0.381  Sum_probs=24.2

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHHh
Q 030848           12 IFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        12 ~~~~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ....+--++++-|+.|+||||+++++..
T Consensus        47 l~G~pannvLL~G~rGtGKSSlVkall~   74 (249)
T PF05673_consen   47 LQGLPANNVLLWGARGTGKSSLVKALLN   74 (249)
T ss_pred             HcCCCCcceEEecCCCCCHHHHHHHHHH
Confidence            3455677899999999999999999976

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.12  E-value=0.00043  Score=43.90  Aligned_cols=21  Identities=43%  Similarity=0.406  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHH
Q 030848           18 FHVLILGIDKAGKTTLLEKLK   38 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~   38 (170)
                      -.++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            457999999999999999974

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.12  E-value=0.00079  Score=50.35  Aligned_cols=27  Identities=26%  Similarity=0.359  Sum_probs=22.6

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .+...-|+|.|++||||||+++.+...
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~l   85 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQAL   85 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            355688999999999999999888543

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.12  E-value=0.00087  Score=46.87  Aligned_cols=26  Identities=38%  Similarity=0.459  Sum_probs=22.3

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      ..-.++++|++||||||+++.+.+..
T Consensus        24 ~g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          24 ARKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            34679999999999999999997743

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.12  E-value=0.00049  Score=49.05  Aligned_cols=24  Identities=33%  Similarity=0.403  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      -.++++|+.|+|||||++.+.+..
T Consensus        28 ~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          28 EFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            367899999999999999998743

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.12  E-value=0.00045  Score=47.94  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=20.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHH
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLK   38 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~   38 (170)
                      +.-.++++|+.|+|||||++.+.
T Consensus        20 ~G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          20 LNVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh
Confidence            34578999999999999999985

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=97.12  E-value=0.00054  Score=48.80  Aligned_cols=24  Identities=33%  Similarity=0.426  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      -.++++|+.|+|||||++.+.+..
T Consensus        27 ~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          27 EVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            467999999999999999998743

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=97.12  E-value=0.00056  Score=48.91  Aligned_cols=25  Identities=36%  Similarity=0.339  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYS   42 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~   42 (170)
                      -.++++|+.|+|||||++.+.+...
T Consensus        14 e~~~l~G~NGsGKSTLlk~i~Gl~~   38 (213)
T PRK15177         14 EHIGILAAPGSGKTTLTRLLCGLDA   38 (213)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcc
Confidence            4678999999999999999987543

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.11  E-value=0.013  Score=39.20  Aligned_cols=21  Identities=38%  Similarity=0.506  Sum_probs=18.7

Q ss_pred             EEEEcCCCCChHHHHHHHHhh
Q 030848           20 VLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      +++.|++|+|||+++..+...
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~   22 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALN   22 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHH
Confidence            689999999999999999663

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=97.11  E-value=0.0005  Score=49.30  Aligned_cols=24  Identities=42%  Similarity=0.533  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      =.++++|+.|+|||||++.+.+..
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          27 EIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            468899999999999999998743

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=97.11  E-value=0.00056  Score=47.45  Aligned_cols=25  Identities=32%  Similarity=0.387  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYS   42 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~   42 (170)
                      -.++++|+.|+|||||++.+.+...
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~G~~~   51 (178)
T cd03229          27 EIVALLGPSGSGKSTLLRCIAGLEE   51 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678999999999999999987433

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.11  E-value=0.00041  Score=48.27  Aligned_cols=22  Identities=32%  Similarity=0.350  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..|+++|++||||||+++++..
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999999963

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.11  E-value=0.0017  Score=51.21  Aligned_cols=134  Identities=19%  Similarity=0.163  Sum_probs=73.5

Q ss_pred             hHHHHhhhccCceeEEEEEcCCCCChHHHHHHHHh-hcccCCC-------CCCCcc----------c-----CCccee--
Q 030848            5 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS-VYSNVEG-------LPPDRI----------V-----PTVGLN--   59 (170)
Q Consensus         5 ~~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~-~~~~~~~-------~~~~~~----------~-----~~~~~~--   59 (170)
                      +..+..-...+..+.|++||-.|+||||-+..|.- ...+...       ++....          .     ..+++.  
T Consensus       366 LRdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfek  445 (587)
T KOG0781|consen  366 LRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEK  445 (587)
T ss_pred             HHHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhh
Confidence            34455555667889999999999999999877711 0000000       000000          0     000000  


Q ss_pred             -EE------------EEEecCeEEEEEEcCCCCc----chhhHHHHh--hccCEEEEEEeC-CCcccHHHHHHHHHHHHc
Q 030848           60 -IG------------RIEVSNSKLVFWDLGGQPG----LRSIWEKYY--EEAHAVVFVIDA-ACPSRFEDSKTALEKVLR  119 (170)
Q Consensus        60 -~~------------~~~~~~~~~~i~D~~G~~~----~~~~~~~~~--~~~~~~i~v~d~-~~~~~~~~~~~~~~~~~~  119 (170)
                       +.            ....++..+.++||+|...    +......++  ...|.+|+|-.+ .-.++.+.+...-..+..
T Consensus       446 GYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~  525 (587)
T KOG0781|consen  446 GYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALAD  525 (587)
T ss_pred             hcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhc
Confidence             00            0112356899999999433    223333333  468889988755 233455655555555544


Q ss_pred             CCCCCCCcEEEEeeCCCccc
Q 030848          120 NEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus       120 ~~~~~~~~ii~v~nK~D~~~  139 (170)
                      .. .+..---++++|.|..+
T Consensus       526 ~~-~~r~id~~~ltk~dtv~  544 (587)
T KOG0781|consen  526 HS-TPRLIDGILLTKFDTVD  544 (587)
T ss_pred             CC-CccccceEEEEeccchh
Confidence            33 23444568889999755

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	170
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		6e-27
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		1e-26
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		1e-26
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		1e-26
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		2e-26
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		2e-26
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		2e-26
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		3e-26
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		3e-26
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		4e-26
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		6e-26
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		7e-26
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		1e-25
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-25
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		2e-25
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		2e-25
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		2e-25
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		4e-25
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		5e-25
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		7e-25
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		8e-25
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		8e-25
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-24
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		1e-24
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		1e-24
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		2e-24
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		2e-24
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		2e-24
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		3e-24
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		5e-24
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		6e-24
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		1e-23
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		2e-23
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		2e-23
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		3e-23
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		3e-23
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		4e-23
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		5e-23
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		5e-23
2h57_A	190	Crystal Structure Of Human Adp-Ribosylation Factor-		1e-22
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		1e-22
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		3e-22
3bh6_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		4e-22
4dcn_A	166	Crystal Structure Analysis Of The Arfaptin2 Bar Dom		5e-22
2qtv_B	167	Structure Of Sec23-Sar1 Complexed With The Active F		1e-18
1m2o_B	190	Crystal Structure Of The Sec23-Sar1 Complex Length		1e-18
4bas_A	199	Structure Of The Arl6 Bbs3 Small Gtpase From Trypan		2e-18
1upt_A	171	Structure Of A Complex Of The Golgin-245 Grip Domai		8e-18
2x77_A	189	Crystal Structure Of Leishmania Major Adp Ribosylat		4e-17
2gao_A	208	Crystal Structure Of Human Sar1a In Complex With Gd		7e-16
1f6b_A	198	Crystal Structure Of Sar1-Gdp Complex Length = 198		1e-15
2fmx_A	195	An Open Conformation Of Switch I Revealed By Sar1-g		1e-15
2fa9_A	189	The Crystal Structure Of Sar1[h79g]-gdp Provides In		3e-15
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		5e-09
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		6e-09
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		6e-08
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		2e-07
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		3e-07
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		5e-07
4fmc_B	171	Espg-Rab1 Complex Length = 171		6e-07
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		7e-07
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		7e-07
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		8e-07
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		8e-07
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		9e-07
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		9e-07
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		9e-07
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		1e-06
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		1e-06
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		1e-06
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		4e-06
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		5e-06
4fmc_F	117	Espg-Rab1 Complex Length = 117		6e-06
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		7e-06
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		1e-05
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		1e-05
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		2e-05
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		2e-05
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		2e-05
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		3e-05
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		3e-05
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-05
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		3e-05
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		3e-05
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		3e-05
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		3e-05
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		3e-05
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		4e-05
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		5e-05
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		5e-05
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		5e-05
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		5e-05
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		6e-05
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		7e-05
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		7e-05
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		7e-05
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		8e-05
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		9e-05
2fh5_B	214	The Structure Of The Mammalian Srp Receptor Length		1e-04
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		1e-04
1vg1_A	185	Gdp-bound Rab7 Length = 185		1e-04
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		1e-04
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		1e-04
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		1e-04
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		1e-04
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		1e-04
2efc_B	181	Ara7-GdpATVPS9A Length = 181		1e-04
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		2e-04
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		2e-04
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		2e-04
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		2e-04
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		2e-04
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		2e-04
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		3e-04
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		3e-04
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		3e-04
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		3e-04
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		3e-04
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		3e-04
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		3e-04
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		3e-04
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		3e-04
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		4e-04
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		4e-04
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		4e-04
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		5e-04
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		5e-04
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		5e-04
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		6e-04
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		8e-04
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		8e-04
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		8e-04

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score =  116 bits (291), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 97/172 (56%), Gaps = 11/172 (6%)
Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGL 58
           M ++F  L+K +F K E  +L++G+D AGKTT+L KLK   + + +         PT+G 
Sbjct: 1   MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGF 51
Query: 59  NIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVL 118
           N+  +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L ++L
Sbjct: 52  NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML 111
Query: 119 RNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
             ++L+ A LL+ ANKQDLP+A++A E+   L L  L  R    +A     G
Sbjct: 112 AEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSG 163

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 96/170 (56%), Gaps = 11/170 (6%)
Query: 3   SLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNI 60
           ++F  L+K +F K E  +L++G+D AGKTT+L KLK   + +          +PT+G N+
Sbjct: 2   NIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT---------TIPTIGFNV 52
Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
             +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L ++L  
Sbjct: 53  ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 112
Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           ++L+ A LL+ ANKQDLP+A++A E+   L L  L  R    +A     G
Sbjct: 113 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSG 162

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 89/156 (57%), Gaps = 10/156 (6%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  +L+LG+D AGKTT+L+K         G   D I PT+G NI  +E    KL  WD+G
Sbjct: 18  ELRLLMLGLDNAGKTTILKKFN-------GEDVDTISPTLGFNIKTLEHRGFKLNIWDVG 70
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
           GQ  LRS W  Y+E    +++V+D+A   R +D +  L+ +L  E L GA LLI ANKQD
Sbjct: 71  GQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQD 130
Query: 137 LPDAVSADELARYLDLKKLDE---RVCMFEAVSGYD 169
           LP A+S + +   L+L  +     R+    AV+G D
Sbjct: 131 LPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGED 166

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 92/165 (55%), Gaps = 11/165 (6%)
Query: 8   LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEV 65
           L+  +F   E  +L++G+D AGKTT+L KLK   V + +         PT+G N+  ++ 
Sbjct: 8   LFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTI---------PTIGFNVETVQY 58
Query: 66  SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
            N     WD+GGQ  +RS+W  YY     V+FV+D+   SR  +++  ++++L  ++L+ 
Sbjct: 59  KNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRN 118
Query: 126 APLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           A  L+ ANKQDLP+A+SA E+   L L  +  R    +A     G
Sbjct: 119 AAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSG 163

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 89/156 (57%), Gaps = 10/156 (6%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  +L+LG+D AGKTT+L+K         G   D I PT+G NI  +E    KL  WD+G
Sbjct: 18  ELRLLMLGLDNAGKTTILKKFN-------GEDVDTISPTLGFNIKTLEHRGFKLNIWDVG 70
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
           GQ  LRS W  Y+E    +++V+D+A   R +D +  L+ +L  E L GA LLI ANKQD
Sbjct: 71  GQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQD 130
Query: 137 LPDAVSADELARYLDLKKLDE---RVCMFEAVSGYD 169
           LP A+S + +   L+L  +     R+    AV+G D
Sbjct: 131 LPGALSXNAIQEALELDSIRSHHWRIQGCSAVTGED 166

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/154 (39%), Positives = 86/154 (55%), Gaps = 7/154 (4%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  +L+LG+D AGKTT+L+K         G   D I PT+G NI  +E    KL  WD+G
Sbjct: 16  ELRLLMLGLDNAGKTTILKKFN-------GEDIDTISPTLGFNIKTLEHRGFKLNIWDVG 68
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
           GQ  LRS W  Y+E    +++V+D+A   R +D +  L+ +L  E L GA LLI ANKQD
Sbjct: 69  GQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQD 128
Query: 137 LPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           LP A+S++ +   L+L  +       +  S   G
Sbjct: 129 LPGALSSNAIREVLELDSIRSHHWCIQGCSAVTG 162

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 93/165 (56%), Gaps = 11/165 (6%)
Query: 8   LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEV 65
           L+  +F K +  +L++G+D AGKTT+L K+K   V + +         PT+G N+  +E 
Sbjct: 8   LFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTI---------PTIGFNVETVEF 58
Query: 66  SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
            N     WD+GGQ  +R +W  YY     ++FV+D+    R +D++  L +++  E+L+ 
Sbjct: 59  RNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKD 118
Query: 126 APLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           A +L+ ANKQDLP+A+SA E+   L L  + ER    ++     G
Sbjct: 119 AIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRG 163

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score =  114 bits (285), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 17/171 (9%)
Query: 8   LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEV 65
           L+  IF K +  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E 
Sbjct: 20  LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEY 70
Query: 66  SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
            N     WD+GGQ  +R +W  Y++    ++FV+D+    R ++S   L+K+L+ ++L+ 
Sbjct: 71  KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRD 130
Query: 126 APLLILANKQDLPDAVSADELARYLDLKKLDER------VCMFEAVSGYDG 170
           A LL+ ANKQD+P+A+   EL   L L+ L  R       C  +    YDG
Sbjct: 131 AVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDG 181

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score =  114 bits (284), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 92/165 (55%), Gaps = 11/165 (6%)
Query: 8   LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEV 65
           L+  +F   E  +L++G+D AGKTT+L KLK   V +          +PT+G N+  ++ 
Sbjct: 8   LFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVIT---------TIPTIGFNVETVQY 58
Query: 66  SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
            N     WD+GGQ  +RS+W  YY     V+FVID+   SR  +++  ++++L  ++L+ 
Sbjct: 59  KNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRN 118
Query: 126 APLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           A  L+ ANKQDLP+A+SA E+   L L  +  R    ++     G
Sbjct: 119 AVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSG 163

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score =  114 bits (284), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 95/168 (56%), Gaps = 10/168 (5%)
Query: 3   SLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR 62
           S+F  LW    +  E  +LILG+D AGKTT+L +L+     +  +   +  PT+G N+  
Sbjct: 7   SMFDKLWG---SNKELRILILGLDGAGKTTILYRLQ-----IGEVVTTK--PTIGFNVET 56
Query: 63  IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED 122
           +   N KL  WDLGGQ  +R  W  YY +  AV+FV+D+    R   +   L  +L+ E+
Sbjct: 57  LSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE 116
Query: 123 LQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           LQ A LL+ ANKQD P A+SA E+++ L+L +L +R     A S   G
Sbjct: 117 LQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKG 164

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score =  113 bits (282), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 55/147 (37%), Positives = 85/147 (57%), Gaps = 7/147 (4%)
Query: 12  IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLV 71
           IF   E  +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N K  
Sbjct: 8   IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFN 60
Query: 72  FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131
            WD+GGQ  +R +W  YY     ++FV+D A   R ++++  L +++ + +++ A +LI 
Sbjct: 61  VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 120
Query: 132 ANKQDLPDAVSADELARYLDLKKLDER 158
           ANKQDLPDA+   E+   L L ++ +R
Sbjct: 121 ANKQDLPDAMKPHEIQEKLGLTRIRDR 147

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score =  112 bits (281), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 55/147 (37%), Positives = 85/147 (57%), Gaps = 7/147 (4%)
Query: 12  IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLV 71
           IF   E  +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N K  
Sbjct: 7   IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFN 59
Query: 72  FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131
            WD+GGQ  +R +W  YY     ++FV+D A   R ++++  L +++ + +++ A +LI 
Sbjct: 60  VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 119
Query: 132 ANKQDLPDAVSADELARYLDLKKLDER 158
           ANKQDLPDA+   E+   L L ++ +R
Sbjct: 120 ANKQDLPDAMKPHEIQEKLGLTRIRDR 146

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 94/168 (55%), Gaps = 11/168 (6%)
Query: 5   FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGR 62
           F  L+  +F K E  +L++G+D AGKTT+L KLK   + + +         PT+G N+  
Sbjct: 8   FGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVET 58
Query: 63  IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED 122
           +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L ++L  ++
Sbjct: 59  VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE 118
Query: 123 LQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           L+ A LL+ ANKQDLP+A++A E+   L L  L +R    ++     G
Sbjct: 119 LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSG 166

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 89/154 (57%), Gaps = 7/154 (4%)
Query: 10  KYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK 69
           K +F K E  + ++G+  +GKTT +  + S   N      + ++PTVG N+ +I   N  
Sbjct: 24  KALFWKEEMELTLVGLQYSGKTTFVNVIASGQFN------EDMIPTVGFNMRKITKGNVT 77
Query: 70  LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
           +  WD+GGQP  RS+WE+Y     A+V+++DAA   + E SK  L  +L    LQG P+L
Sbjct: 78  IKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVL 137
Query: 130 ILANKQDLPDAVSADELARYLDLKKLDER-VCMF 162
           +L NK+DLP A+   EL   ++L  + +R +C +
Sbjct: 138 VLGNKRDLPGALDEKELIEKMNLSAIQDREICCY 171

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 95/167 (56%), Gaps = 8/167 (4%)
Query: 4   LFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI 63
           LF  +W+ +F   E  V+I+G+D AGKTT+L +    +S  E +      PT+G N+  I
Sbjct: 4   LFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQ----FSMNEVVHTS---PTIGSNVEEI 55
Query: 64  EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL 123
            ++N++ + WD+GGQ  LRS W  YY     V+ V+D+    R   ++  L K+L +EDL
Sbjct: 56  VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL 115
Query: 124 QGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           + A LLI ANKQD+ + ++  E++++L L  + +     +A     G
Sbjct: 116 RKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTG 162

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 95/167 (56%), Gaps = 8/167 (4%)
Query: 4   LFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI 63
           LF  +W+ +F   E  V+I+G+D AGKTT+L +    +S  E +      PT+G N+  I
Sbjct: 4   LFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQ----FSMNEVVHTS---PTIGSNVEEI 55
Query: 64  EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL 123
            ++N++ + WD+GGQ  LRS W  YY     V+ V+D+    R   ++  L K+L +EDL
Sbjct: 56  VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL 115
Query: 124 QGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           + A LLI ANKQD+ + ++  E++++L L  + +     +A     G
Sbjct: 116 RKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTG 162

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 11/165 (6%)
Query: 8   LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEV 65
           L+  +F   E  +L++G+D AGKTT+L KLK   V + +         PT+G N+  ++ 
Sbjct: 8   LFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTI---------PTIGFNVECVQY 58
Query: 66  SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
            N     WD+GGQ  +RS+W  YY     V+FV+D+   SR  +++  ++++L  ++L  
Sbjct: 59  CNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCN 118
Query: 126 APLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           A  L+ ANKQDLP+A+SA E+   L L  +  R    +A     G
Sbjct: 119 AAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSG 163

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score =  110 bits (275), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 87/155 (56%), Gaps = 11/155 (7%)
Query: 18  FHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
             +L++G+D AGKTT+L KLK   V + +         PT+G N+  ++  N     WD+
Sbjct: 1   MRILMVGLDGAGKTTVLYKLKLGEVITTI---------PTIGFNVETVQYKNISFTVWDV 51
Query: 76  GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
           GGQ  +RS+W  YY     V+FV+D+   SR  +++  ++++L  ++L+ A  L+ ANKQ
Sbjct: 52  GGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQ 111
Query: 136 DLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           DLP+A+SA E+   L L  +  R    +A     G
Sbjct: 112 DLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSG 146

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score =  110 bits (274), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 62/155 (40%), Positives = 87/155 (56%), Gaps = 10/155 (6%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
             +L+LG+D AGKTT+L+K         G   D I PT+G NI  +E    KL  WD+GG
Sbjct: 2   LRLLMLGLDNAGKTTILKKFN-------GEDVDTISPTLGFNIKTLEHRGFKLNIWDVGG 54
Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
              LRS W  Y+E    +++V+D+A   R +D +  L+ +L  E L GA LLI ANKQDL
Sbjct: 55  LKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 114
Query: 138 PDAVSADELARYLDLKKLDE---RVCMFEAVSGYD 169
           P A+S + +   L+L  +     R+    AV+G D
Sbjct: 115 PGALSCNAIQEALELDSIRSHHWRIQGCSAVTGED 149

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score =  109 bits (273), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 54/147 (36%), Positives = 84/147 (57%), Gaps = 7/147 (4%)
Query: 12  IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLV 71
           IF   E  +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N K  
Sbjct: 8   IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFN 60
Query: 72  FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131
            WD+GG   +R +W  YY     ++FV+D A   R ++++  L +++ + +++ A +LI 
Sbjct: 61  VWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 120
Query: 132 ANKQDLPDAVSADELARYLDLKKLDER 158
           ANKQDLPDA+   E+   L L ++ +R
Sbjct: 121 ANKQDLPDAMKPHEIQEKLGLTRIRDR 147

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score =  109 bits (272), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 90/161 (55%), Gaps = 11/161 (6%)
Query: 12  IFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK 69
           +F K E  +L++G+D AGKTT+L KLK   + +          +PT+G N+  +E  N  
Sbjct: 160 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT---------TIPTIGFNVETVEYKNIS 210
Query: 70  LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
              WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L ++L  ++L+ A LL
Sbjct: 211 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL 270
Query: 130 ILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           + ANKQDLP+A++A E+   L L  L  R    +A     G
Sbjct: 271 VFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSG 311

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score =  109 bits (272), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 84/146 (57%), Gaps = 7/146 (4%)
Query: 13  FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF 72
            +  E  +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N K   
Sbjct: 318 LSNKEMRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFNV 370
Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
           WD+GGQ  +R +W  YY     ++FV+D A   R ++++  L +++ + +++ A +LI A
Sbjct: 371 WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA 430
Query: 133 NKQDLPDAVSADELARYLDLKKLDER 158
           NKQDLPDA+   E+   L L ++ +R
Sbjct: 431 NKQDLPDAMKPHEIQEKLGLTRIRDR 456

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 87/150 (58%), Gaps = 7/150 (4%)
Query: 14  TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFW 73
           +K E  + ++G+  +GKTT +  + S   N      + ++PTVG N+ +I   N  +  W
Sbjct: 19  SKEEMELTLVGLQYSGKTTFVNVIASGQFN------EDMIPTVGFNMRKITKGNVTIKLW 72
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D+GGQP  RS+WE+Y     A+V+++DAA   + E SK  L  +L    LQG P+L+L N
Sbjct: 73  DIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGN 132
Query: 134 KQDLPDAVSADELARYLDLKKLDER-VCMF 162
           K+DLP A+   EL   ++L  + +R +C +
Sbjct: 133 KRDLPGALDEKELIEKMNLSAIQDREICCY 162

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 93/165 (56%), Gaps = 11/165 (6%)
Query: 8   LWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEV 65
           L+  +F K +  +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E 
Sbjct: 8   LFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEY 58
Query: 66  SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
            N     WD+GGQ  +R +W+ Y++    ++FV+D+    R ++    L+K+L  ++L+ 
Sbjct: 59  KNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRD 118
Query: 126 APLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           A LL+ ANKQDLP+A++  E+   L L+ L  R    +A     G
Sbjct: 119 AVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQG 163

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 89/150 (59%), Gaps = 7/150 (4%)
Query: 14  TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFW 73
           +K E  + ++G+  +GKTT +  + S      G   + ++PTVG N+ ++   N  +  W
Sbjct: 19  SKEEMELTLVGLQYSGKTTFVNVIAS------GQFSEDMIPTVGFNMRKVTKGNVTIKIW 72
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D+GGQP  RS+WE+Y    +A+V++IDAA   + E S+  L  +L    LQG P+L+L N
Sbjct: 73  DIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGN 132
Query: 134 KQDLPDAVSADELARYLDLKKLDER-VCMF 162
           K+DLP+A+   +L   ++L  + +R +C +
Sbjct: 133 KRDLPNALDEKQLIEKMNLSAIQDREICCY 162

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 93/170 (54%), Gaps = 14/170 (8%)
Query: 4   LFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKL---KSVYSNVEGLPPDRIVPTVGLNI 60
           +F  LW  +F   E  V+I+G+D AGKTT+L +    + V+++          PT+G N+
Sbjct: 4   IFAKLWS-LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTS----------PTIGSNV 52
Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
             I V N+  + WD+GGQ  LRS W  YY     ++ V+D+    R   +K  L ++L +
Sbjct: 53  EEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAH 112
Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           EDL+ A +LI ANKQD+   ++A E+++YL L  + +     ++     G
Sbjct: 113 EDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTG 162

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score =  107 bits (268), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 82/141 (58%), Gaps = 7/141 (4%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
             +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N K   WD+GG
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFNVWDVGG 53
Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
           Q  +R +W  YY     ++FV+D A   R ++++  L +++ + +++ A +LI ANKQDL
Sbjct: 54  QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 113
Query: 138 PDAVSADELARYLDLKKLDER 158
           PDA+   E+   L L ++ +R
Sbjct: 114 PDAMKPHEIQEKLGLTRIRDR 134

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score =  107 bits (268), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 82/141 (58%), Gaps = 7/141 (4%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
             +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N K   WD+GG
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFNVWDVGG 53
Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
           Q  +R +W  YY     ++FV+D A   R ++++  L +++ + +++ A +LI ANKQDL
Sbjct: 54  QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 113
Query: 138 PDAVSADELARYLDLKKLDER 158
           PDA+   E+   L L ++ +R
Sbjct: 114 PDAMKPHEIQEKLGLTRIRDR 134

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score =  107 bits (268), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 89/163 (54%), Gaps = 13/163 (7%)
Query: 12  IFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK 69
           +  K E  +L++G+D AGKT++L KLK   + + +         PT+G N+  +E  N  
Sbjct: 12  LLGKKEMRILMVGLDAAGKTSILYKLKLGEIVTTI---------PTIGFNVETVEYKNIS 62
Query: 70  LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
              WD+GGQ  +R +W  YY+   A++FV+D+    R  +++  L K+L  ++++ A LL
Sbjct: 63  FTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILL 122
Query: 130 ILANKQDLPDAVSADELARYLDLKKLDER--VCMFEAVSGYDG 170
           + ANK DLP A+S  E+   L L+ +  R   C     +  DG
Sbjct: 123 VFANKHDLPQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDG 165

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score =  106 bits (265), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 82/142 (57%), Gaps = 7/142 (4%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N K   WD+G
Sbjct: 3   EMRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFNVWDVG 55
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
           G   +R +W  YY     ++FV+D A   R ++++  L +++ + +++ A +LI ANKQD
Sbjct: 56  GLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 115
Query: 137 LPDAVSADELARYLDLKKLDER 158
           LPDA+   E+   L L ++ +R
Sbjct: 116 LPDAMKPHEIQEKLGLTRIRDR 137

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score =  106 bits (265), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 82/142 (57%), Gaps = 7/142 (4%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N K   WD+G
Sbjct: 2   EMRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFNVWDVG 54
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
           G   +R +W  YY     ++FV+D A   R ++++  L +++ + +++ A +LI ANKQD
Sbjct: 55  GLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 114
Query: 137 LPDAVSADELARYLDLKKLDER 158
           LPDA+   E+   L L ++ +R
Sbjct: 115 LPDAMKPHEIQEKLGLTRIRDR 136

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/147 (40%), Positives = 82/147 (55%), Gaps = 10/147 (6%)
Query: 26  DKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIW 85
           D AGKTT+L+K         G   D I PT+G NI  +E    KL  WD+GGQ  LRS W
Sbjct: 27  DNAGKTTILKKFN-------GEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYW 79
Query: 86  EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADE 145
             Y+E    +++V+D+A   R +D +  L+ +L  E L GA LLI ANKQDLP A+S + 
Sbjct: 80  RNYFESTDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNA 139
Query: 146 LARYLDLKKLDE---RVCMFEAVSGYD 169
           +   L+L  +     R+    AV+G D
Sbjct: 140 IQEALELDSIRSHHWRIQGCSAVTGED 166

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 86/155 (55%), Gaps = 11/155 (7%)
Query: 18  FHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
             +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDV 51
Query: 76  GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
           GGQ  +R +W  Y++    ++FV+D+    R  +++  L ++L  ++L+ A LL+ ANKQ
Sbjct: 52  GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 111
Query: 136 DLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           DLP+A++A E+   L L  L  R    +A     G
Sbjct: 112 DLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSG 146

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score =  104 bits (259), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 79/140 (56%), Gaps = 7/140 (5%)
Query: 19  HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78
            +L LG+D AGKTT+L KLK   S          +PTVG N+  +   N K   WD+GGQ
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFNVWDVGGQ 54
Query: 79  PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138
             +R +W  YY     ++FV+D A   R ++++  L +++ + + + A +LI ANKQDLP
Sbjct: 55  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLP 114
Query: 139 DAVSADELARYLDLKKLDER 158
           DA    E+   L L ++ +R
Sbjct: 115 DAXKPHEIQEKLGLTRIRDR 134

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score =  104 bits (259), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 88/154 (57%), Gaps = 7/154 (4%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  V+I+G+D AGKTT+L +    +S  E +      PT+G N+  I ++N++ + WD+G
Sbjct: 21  EHKVIIVGLDNAGKTTILYQ----FSMNEVVHTS---PTIGSNVEEIVINNTRFLMWDIG 73
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
           GQ  LRS W  YY     V+ V+D+    R   ++  L K+L +EDL+ A LLI ANKQD
Sbjct: 74  GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQD 133
Query: 137 LPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           + + ++  E++++L L  + +     +A     G
Sbjct: 134 VKECMTVAEISQFLKLTSIKDHQWHIQACCALTG 167

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score =  104 bits (259), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 89/157 (56%), Gaps = 7/157 (4%)
Query: 14  TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFW 73
           +  E  V+I+G+D AGKTT+L +    +S  E +      PT+G N+  I ++N++ + W
Sbjct: 19  SHQEHKVIIVGLDNAGKTTILYQ----FSMNEVVHTS---PTIGSNVEEIVINNTRFLMW 71
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D+GGQ  LRS W  YY     V+ V+D+    R   ++  L K+L +EDL+ A LLI AN
Sbjct: 72  DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFAN 131
Query: 134 KQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           KQD+ + ++  E++++L L  + +     +A     G
Sbjct: 132 KQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTG 168

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score =  103 bits (258), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/155 (40%), Positives = 89/155 (57%), Gaps = 7/155 (4%)
Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
           +E  +L+LG+D AGKTTLL++L S     E +    I PT G NI  ++    KL  WD+
Sbjct: 3   SEVRILLLGLDNAGKTTLLKQLAS-----EDIS--HITPTQGFNIKSVQSQGFKLNVWDI 55
Query: 76  GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
           GGQ  +R  W  Y+E    +++VID+A   RFE++   L ++L  E L   P+LI ANKQ
Sbjct: 56  GGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQ 115
Query: 136 DLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           DL  A  A E+A  L+L  + +RV   ++ S   G
Sbjct: 116 DLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTG 150

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score =  103 bits (257), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 88/154 (57%), Gaps = 7/154 (4%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  +L+LG+D AGKTTLL++L S     E +    I PT G NI  ++    KL  WD+G
Sbjct: 17  EVRILLLGLDNAGKTTLLKQLAS-----EDI--SHITPTQGFNIKSVQSQGFKLNVWDIG 69
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
           GQ  +R  W  Y+E    +++VID+A   RFE++   L ++L  E L   P+LI ANKQD
Sbjct: 70  GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD 129
Query: 137 LPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           L  A  A E+A  L+L  + +RV   ++ S   G
Sbjct: 130 LLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTG 163

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score =  103 bits (257), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 88/154 (57%), Gaps = 7/154 (4%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  +L+LG+D AGKTTLL++L S     E +    I PT G NI  ++    KL  WD+G
Sbjct: 16  EVRILLLGLDNAGKTTLLKQLAS-----EDI--SHITPTQGFNIKSVQSQGFKLNVWDIG 68
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
           GQ  +R  W  Y+E    +++VID+A   RFE++   L ++L  E L   P+LI ANKQD
Sbjct: 69  GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQD 128
Query: 137 LPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           L  A  A E+A  L+L  + +RV   ++ S   G
Sbjct: 129 LLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTG 162

>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190

Iteration: 1
 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 96/156 (61%), Gaps = 10/156 (6%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E HVL LG+D +GKTT++ KLK   SN +      I+PT+G +I + + S+     +D+ 
Sbjct: 21  EVHVLCLGLDNSGKTTIINKLKP--SNAQS---QNILPTIGFSIEKFKSSSLSFTVFDMS 75
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA--PLLILANK 134
           GQ   R++WE YY+E  A++FVID++   R   +K  L+ +L + D++    P+L  ANK
Sbjct: 76  GQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANK 135
Query: 135 QDLPDAVSADELARYLDLKKLDER---VCMFEAVSG 167
            DL DAV++ ++++ L L+ + ++   +C  +A+ G
Sbjct: 136 MDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKG 171

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/144 (38%), Positives = 81/144 (56%), Gaps = 11/144 (7%)
Query: 17  EFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
           E  +LILG+D AGKTT+L +L+   V + +         PT+G N+  +   N K   WD
Sbjct: 2   EMRILILGLDGAGKTTILYRLQVGEVVTTI---------PTIGFNVETVTYKNLKFQVWD 52
Query: 75  LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 134
           LGGQ  +R  W  YY    AV++V+D+    R   SK+ L  +L  E+L+ A L++ ANK
Sbjct: 53  LGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANK 112
Query: 135 QDLPDAVSADELARYLDLKKLDER 158
           QD+  A++  E+A  L L  L +R
Sbjct: 113 QDMEQAMTPSEMANALGLPALKDR 136

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 85/155 (54%), Gaps = 11/155 (7%)
Query: 18  FHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
             +L++G+D AGKTT+L KLK   + + +         PT+G N+  +E  N     WD+
Sbjct: 3   MRILMVGLDAAGKTTILYKLKLGEIVTTI---------PTIGFNVETVEYKNISFTVWDV 53
Query: 76  GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
           GG   +R +W  Y++    ++FV+D+    R  +++  L ++L  ++L+ A LL+ ANKQ
Sbjct: 54  GGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 113
Query: 136 DLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           DLP+A++A E+   L L  L  R    +A     G
Sbjct: 114 DLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSG 148

>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164

Iteration: 1
 Score =  100 bits (249), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
           +E  +L+LG+D AGKTTLL++L S     E +    I PT G NI  ++    KL  WD+
Sbjct: 3   SEVRILLLGLDNAGKTTLLKQLAS-----EDIS--HITPTQGFNIKSVQSQGFKLNVWDI 55
Query: 76  GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
           GG   +R  W  Y+E    +++VID+A   RFE++   L ++L  E L   P+LI ANKQ
Sbjct: 56  GGLRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQ 115
Query: 136 DLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           DL  A  A E+A  L+L  + +RV   ++ S   G
Sbjct: 116 DLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTG 150

>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166

Iteration: 1
 Score =  100 bits (248), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 81/144 (56%), Gaps = 11/144 (7%)
Query: 17  EFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
           E  +LILG+D AGKTT+L +L+   V + +         PT+G N+  +   N K   WD
Sbjct: 4   EMRILILGLDGAGKTTILYRLQVGEVVTTI---------PTIGFNVETVTYKNLKFQVWD 54
Query: 75  LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 134
           LGG   +R  W  YY    AV++V+D+    R   SK+ L  +L  E+L+ A L++ ANK
Sbjct: 55  LGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANK 114
Query: 135 QDLPDAVSADELARYLDLKKLDER 158
           QD+  A+++ E+A  L L  L +R
Sbjct: 115 QDMEQAMTSSEMANSLGLPALKDR 138

>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 75/136 (55%), Gaps = 13/136 (9%)
Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV---PTVGLNIGRIEVSNSKLVFWDLG 76
           +L LG+D AGKTTLL  LK+          DR+    PT       + + N K   +DLG
Sbjct: 4   LLFLGLDNAGKTTLLHMLKN----------DRLATLQPTWHPTSEELAIGNIKFTTFDLG 53
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
           G    R +W+ Y+ E + +VF++DAA P RF++++  L+ +    +L+  P +IL NK D
Sbjct: 54  GHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKID 113
Query: 137 LPDAVSADELARYLDL 152
            P+AVS  EL   L L
Sbjct: 114 APNAVSEAELRSALGL 129

>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 75/136 (55%), Gaps = 13/136 (9%)
Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV---PTVGLNIGRIEVSNSKLVFWDLG 76
           +L LG+D AGKTTLL  LK+          DR+    PT       + + N K   +DLG
Sbjct: 26  LLFLGLDNAGKTTLLHMLKN----------DRLATLQPTWHPTSEELAIGNIKFTTFDLG 75
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
           G    R +W+ Y+ E + +VF++DAA P RF++++  L+ +    +L+  P +IL NK D
Sbjct: 76  GHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKID 135
Query: 137 LPDAVSADELARYLDL 152
            P+AVS  EL   L L
Sbjct: 136 APNAVSEAELRSALGL 151

>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 78/149 (52%), Gaps = 12/149 (8%)
Query: 14  TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFW 73
           +KT+  V++ G+D +GKTT++ ++K   S+        I  TVG N+   E        +
Sbjct: 14  SKTKLQVVMCGLDNSGKTTIINQVKPAQSS-----SKHITATVGYNVETFEKGRVAFTVF 68
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQ-------GA 126
           D+GG    R +WE YY+   AV+FV+D++   R    K+ ++ +L++ED++         
Sbjct: 69  DMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRV 128
Query: 127 PLLILANKQDLPDAVSADELARYLDLKKL 155
           P L  ANK D   A +A EL   LDL  L
Sbjct: 129 PFLFFANKMDAAGAKTAAELVEILDLTTL 157

>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171

Iteration: 1
 Score = 86.3 bits (212), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 77/142 (54%), Gaps = 7/142 (4%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  +LILG+D AGKTT+L +L+ V   V        +PT+G N+  +   N K   WDLG
Sbjct: 7   EXRILILGLDGAGKTTILYRLQ-VGEVVT------TIPTIGFNVETVTYKNLKFQVWDLG 59
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
           G   +R  W  YY    AV++V+D+    R   SK+ L   L  E+L+ A L++ ANKQD
Sbjct: 60  GLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQD 119
Query: 137 LPDAVSADELARYLDLKKLDER 158
              A ++ E A  L L  L +R
Sbjct: 120 XEQAXTSSEXANSLGLPALKDR 141

>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/143 (37%), Positives = 80/143 (55%), Gaps = 7/143 (4%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           +  VL+LG+D AGKT++L +L               VPTVG+N+  ++  N     WDLG
Sbjct: 22  KIRVLMLGLDNAGKTSILYRLHLG-------DVVTTVPTVGVNLETLQYKNISFEVWDLG 74
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
           GQ G+R  W  Y+ +  AV++V+D+    R   +K  L  +L  ++L+ + LLI ANKQD
Sbjct: 75  GQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQD 134
Query: 137 LPDAVSADELARYLDLKKLDERV 159
           LPDA S  E+A  L +  +  R 
Sbjct: 135 LPDAASEAEIAEQLGVSSIMNRT 157

>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208

Iteration: 1
 Score = 79.7 bits (195), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 75/151 (49%), Gaps = 18/151 (11%)
Query: 5   FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI---VPTVGLNIG 61
           F GL+K         ++ LG+D AGKTTLL  LK           DR+   VPT+     
Sbjct: 28  FLGLYK-----KSGKLVFLGLDNAGKTTLLHMLKD----------DRLGQHVPTLHPTSE 72
Query: 62  RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE 121
            + ++      +DLGG    R +W+ Y    + +VF++D A  SR  +SK  L  ++ +E
Sbjct: 73  ELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDE 132
Query: 122 DLQGAPLLILANKQDLPDAVSADELARYLDL 152
            +   P+LIL NK D  DA+S ++L     L
Sbjct: 133 TISNVPILILGNKIDRTDAISEEKLREIFGL 163

>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 77/151 (50%), Gaps = 18/151 (11%)
Query: 5   FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI---VPTVGLNIG 61
           F GL+K    KT   ++ LG+D AGKTTLL  LK           DR+   VPT+     
Sbjct: 18  FLGLYK----KTG-KLVFLGLDNAGKTTLLHMLKD----------DRLGQHVPTLHPTSE 62
Query: 62  RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE 121
            + ++      +DLGG    R +W+ Y    + +VF++D A   R  +SK  L+ ++ +E
Sbjct: 63  ELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE 122
Query: 122 DLQGAPLLILANKQDLPDAVSADELARYLDL 152
            +   P+LIL NK D P+A+S + L     L
Sbjct: 123 TIANVPILILGNKIDRPEAISEERLREMFGL 153

>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 77/151 (50%), Gaps = 18/151 (11%)
Query: 5   FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI---VPTVGLNIG 61
           F GL+K    KT   ++ LG+D AGKTTLL  LK           DR+   VPT+     
Sbjct: 15  FLGLYK----KTG-KLVFLGLDNAGKTTLLHMLKD----------DRLGQHVPTLHPTSE 59
Query: 62  RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE 121
            + ++      +DLGG    R +W+ Y    + +VF++D A   R  +SK  L+ ++ +E
Sbjct: 60  ELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE 119
Query: 122 DLQGAPLLILANKQDLPDAVSADELARYLDL 152
            +   P+LIL NK D P+A+S + L     L
Sbjct: 120 TIANVPILILGNKIDRPEAISEERLREMFGL 150

>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 77/151 (50%), Gaps = 18/151 (11%)
Query: 5   FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI---VPTVGLNIG 61
           F GL+K    KT   ++ LG+D AGKTTLL  LK           DR+   VPT+     
Sbjct: 9   FLGLYK----KTG-KLVFLGLDNAGKTTLLHMLKD----------DRLGQHVPTLHPTSE 53
Query: 62  RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE 121
            + ++      +DLGG    R +W+ Y    + +VF++D A   R  +SK  L+ ++ +E
Sbjct: 54  ELTIAGMTFTTFDLGGGIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE 113
Query: 122 DLQGAPLLILANKQDLPDAVSADELARYLDL 152
            +   P+LIL NK D P+A+S + L     L
Sbjct: 114 TIANVPILILGNKIDRPEAISEERLREMFGL 144

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 11/129 (8%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFW 73
           F ++++G    GKT L       Y    G  PDR   T+G++       I+    K+  W
Sbjct: 30  FKIIVIGDSNVGKTCL------TYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLW 83
Query: 74  DLGGQPGLR-SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
           D  GQ   R S+ + YY   HAVVFV D    + F      +E+  ++      P +++ 
Sbjct: 84  DTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVG 143
Query: 133 NKQDLPDAV 141
           NK DL  A+
Sbjct: 144 NKCDLRSAI 152

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVFW 73
           F ++++G    GKT L       Y    G  PDR   T+G++       I+    K+  W
Sbjct: 21  FKIIVIGDSNVGKTCL------TYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLW 74
Query: 74  DLGGQPGLR-SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
           D  GQ   R S+ + YY   HAVVFV D    + F      +E+  ++      P +++ 
Sbjct: 75  DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVG 134
Query: 133 NKQDLPDAVS 142
           NK DL  A+ 
Sbjct: 135 NKCDLRSAIQ 144

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
           F +L++G    GK+ LL +        +    D  + T+G++  I  I + N   KL  W
Sbjct: 10  FKLLLIGDSGVGKSCLLLRF------ADDTYTDSYISTIGVDFKIRTISLENKTVKLQIW 63
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY  AH ++ V D      F++ K  ++++ R   ++    L++ N
Sbjct: 64  DTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYA-MENVNKLLVGN 122
Query: 134 KQDL--PDAVSADE 145
           K DL     V++DE
Sbjct: 123 KCDLVSKRVVTSDE 136

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSK--LVFW 73
           F +LI+G    GK++LL +        +       + T+G++  I  +E++  K  L  W
Sbjct: 10  FKLLIIGDSGVGKSSLLLRF------ADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIW 63
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY   H V+ V D      F + K  L ++  N++      +++ N
Sbjct: 64  DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI--NQNCDDVCRILVGN 121
Query: 134 KQDLPD 139
           K D P+
Sbjct: 122 KNDDPE 127

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 10/128 (7%)
Query: 13  FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNS 68
           F    F V+++G    GKT LL + K              + TVG++       ++    
Sbjct: 6   FYDVAFKVMLVGDSGVGKTCLLVRFKD-----GAFLAGTFISTVGIDFRNKVLDVDGVKV 60
Query: 69  KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 128
           KL  WD  GQ   RS+   YY +AHA++ + D    + F++ +  L ++          L
Sbjct: 61  KLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVAL 119
Query: 129 LILANKQD 136
           ++L NK D
Sbjct: 120 MLLGNKVD 127

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSK--LVFW 73
           F ++++G    GKT L+ +        +GL P     T+G++  I  +E++  K  L  W
Sbjct: 27  FKIVLIGNAGVGKTCLVRRF------TQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 80
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF 107
           D  GQ   RSI + YY  A+A++   D  C   F
Sbjct: 81  DTAGQERFRSITQSYYRSANALILTYDITCEESF 114

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
           F +L++G    GK+ LL +        +    +  + T+G++  I  IE+     KL  W
Sbjct: 7   FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 60
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY  AH ++ V D      F + K  L+++ R    +    L++ N
Sbjct: 61  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGN 119
Query: 134 KQDLP-----DAVSADELARYL 150
           K DL      D  +A E A  L
Sbjct: 120 KCDLTTKKVVDYTTAKEFADSL 141

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
           F +L++G    GK+ LL +        +    +  + T+G++  I  IE+     KL  W
Sbjct: 7   FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 60
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY  AH ++ V D      F + K  L+++ R    +    L++ N
Sbjct: 61  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGN 119
Query: 134 KQDLP-----DAVSADELARYL 150
           K DL      D  +A E A  L
Sbjct: 120 KCDLTTKKVVDYTTAKEFADSL 141

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
           F +L++G    GK+ LL +        +    +  + T+G++  I  IE+     KL  W
Sbjct: 34  FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 87
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY  AH ++ V D      F + K  L+++ R    +    L++ N
Sbjct: 88  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGN 146
Query: 134 KQDLP-----DAVSADELARYLDL 152
           K DL      D  +A E A  L +
Sbjct: 147 KCDLTTKKVVDYTTAKEFADSLGI 170

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
           F +L++G    GK+ LL +        +    +  + T+G++  I  IE+     KL  W
Sbjct: 26  FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 79
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY  AH ++ V D      F + K  L+++ R    +    L++ N
Sbjct: 80  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGN 138
Query: 134 KQDLP-----DAVSADELARYLDL 152
           K DL      D  +A E A  L +
Sbjct: 139 KCDLTTKKVVDYTTAKEFADSLGI 162

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Query: 18  FHVLILGIDKAGKTTLLEKLKS-VYSN--VEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
           F +L++G    GK+ LL +     Y+N  +  +  D  + TV L+   +     KL  WD
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV-----KLQIWD 63
Query: 75  LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 134
             GQ   R+I   YY  +H ++ V D      F   K  L+++ R        LL+  NK
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLV-GNK 122
Query: 135 QDLPD--AVSADELARYLDLKKL 155
            DL D   V  D    + D  K+
Sbjct: 123 CDLKDKRVVEYDVAKEFADANKM 145

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Query: 18  FHVLILGIDKAGKTTLLEKLKS-VYSN--VEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
           F +L++G    GK+ LL +     Y+N  +  +  D  + TV L+   +     KL  WD
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV-----KLQIWD 63
Query: 75  LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 134
             GQ   R+I   YY  +H ++ V D      F   K  L+++ R        LL+  NK
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLV-GNK 122
Query: 135 QDLPD--AVSADELARYLDLKKL 155
            DL D   V  D    + D  K+
Sbjct: 123 CDLKDKRVVEYDVAKEFADANKM 145

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Query: 18  FHVLILGIDKAGKTTLLEKLKS-VYSN--VEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
           F +L++G    GK+ LL +     Y+N  +  +  D  + TV L+   +     KL  WD
Sbjct: 22  FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV-----KLQIWD 76
Query: 75  LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 134
             GQ   R+I   YY  +H ++ V D      F   K  L+++ R        LL+  NK
Sbjct: 77  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLV-GNK 135
Query: 135 QDLPD--AVSADELARYLDLKKL 155
            DL D   V  D    + D  K+
Sbjct: 136 CDLKDKRVVEYDVAKEFADANKM 158

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
           F +L++G    GK+ LL +        +    +  + T+G++  I  IE+     KL  W
Sbjct: 10  FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 63
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY  AH ++ V D      + + K  L+++ R    +    L++ N
Sbjct: 64  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS-ENVNKLLVGN 122
Query: 134 KQDLP-----DAVSADELARYLDL 152
           K DL      D  +A E A  L +
Sbjct: 123 KSDLTTKKVVDNTTAKEFADSLGI 146

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
           F +L++G    GK+ LL +        +    +  + T+G++  I  IE+     KL  W
Sbjct: 10  FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 63
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY  AH ++ V D      + + K  L+++ R    +    L++ N
Sbjct: 64  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS-ENVNKLLVGN 122
Query: 134 KQDLP-----DAVSADELARYLDL 152
           K DL      D  +A E A  L +
Sbjct: 123 KSDLTTKKVVDNTTAKEFADSLGI 146

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
           F +L++G    GK  LL +        +    +  + T+G++  I  IE+     KL  W
Sbjct: 17  FKLLLIGDSGVGKNCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 70
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY  AH ++ V D      F + K  L+++ R    +    L++ N
Sbjct: 71  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGN 129
Query: 134 KQDLP-----DAVSADELARYLDL 152
           K DL      D  +A E A  L +
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGI 153

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
           F +L++G    GK+ LL +        +    +  + T+G++  I  IE+     KL  W
Sbjct: 17  FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 70
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY  AH ++ V D      F + K  L+++ R    +    L++ N
Sbjct: 71  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGN 129
Query: 134 KQDLP-----DAVSADELARYLDL 152
           K DL      D  +A E A  L +
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGI 153

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFWDL 75
           +L++G    GK+ LL +        +    +  + T+G++  I  IE+     KL  WD 
Sbjct: 2   LLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 55
Query: 76  GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
            GQ   R+I   YY  AH ++ V D      F + K  L+++ R    +    L++ NK 
Sbjct: 56  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKC 114
Query: 136 DLP-----DAVSADELARYLDL 152
           DL      D  +A E A  L +
Sbjct: 115 DLTTKKVVDYTTAKEFADSLGI 136

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 14/145 (9%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSNSKLV---F 72
           F ++++G    GK+ LL +      N+E         T+G+      I++ N+K++    
Sbjct: 8   FKIVLIGDSGVGKSNLLSRFTRDEFNLES------KSTIGVEFATKSIQLKNNKIIKAQI 61
Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
           WD  GQ   R+I   YY  A   + V D    + FE+ +  L+++  N D     +L++ 
Sbjct: 62  WDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNAD-SNIVILLVG 120
Query: 133 NKQDLPD--AVSADELARYLDLKKL 155
           NK DL     ++ ++  +Y   +KL
Sbjct: 121 NKSDLKHLRVINDNDATQYAKKEKL 145

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFWDL 75
           +L++G    GK+ LL +        +    +  + T+G++  I  IE+     KL  WD 
Sbjct: 1   LLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 54
Query: 76  GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
            GQ   R+I   YY  AH ++ V D      F + K  L+++ R    +    L++ NK 
Sbjct: 55  AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKC 113
Query: 136 DLP 138
           DL 
Sbjct: 114 DLT 116

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 13/138 (9%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSNSKL--VFW 73
           F ++++G    GK+ LL +  +   N+E         T+G+      IEV N K+    W
Sbjct: 11  FKIVLIGDSGVGKSNLLSRFTTDEFNIESKS------TIGVEFATRTIEVENKKIKAQIW 64
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  G    R+I   YY  A   + V D +  S +E+    L ++  N D   A  LI  N
Sbjct: 65  DTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLI-GN 123
Query: 134 KQDLPD--AVSADELARY 149
           K DL    AV  DE   +
Sbjct: 124 KSDLAHLRAVPTDEAKNF 141

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 16/144 (11%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFW 73
           F ++++G    GKT ++++ K+      G   +R   T+G++       I+    KL  W
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKT------GAFSERQGSTIGVDFTMKTLEIQGKRVKLQIW 83
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I + YY  A+  +   D    S F      +E V +        LLI  N
Sbjct: 84  DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLI-GN 142
Query: 134 KQDLPD-----AVSADELARYLDL 152
           K DL +        A  LA + D+
Sbjct: 143 KSDLSELREVSLAEAQSLAEHYDI 166

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
           F +L++G    GK+ LL +        +    +  + T+G++  I  IE+     KL  W
Sbjct: 9   FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 62
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY  AH ++ V D      F + K  L+++ R    +    L++  
Sbjct: 63  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGI 121
Query: 134 KQDLP-----DAVSADELARYLDL 152
           K DL      D  +A E A  L +
Sbjct: 122 KCDLTTKKVVDYTTAKEFADSLGI 145

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSK--LVFW 73
             +L++G    GK+ LL +       VE       + T+G++  I  ++++  K  L  W
Sbjct: 21  MKILLIGDSGVGKSCLLVRF------VEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLW 74
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY  A  ++ V D      F + K   + V  + + + A LL++ N
Sbjct: 75  DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE-AQLLLVGN 133
Query: 134 KQDLPD-AVSADE 145
           K D+    V+AD+
Sbjct: 134 KSDMETRVVTADQ 146

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 18  FHVLILGIDKAGKTTLLEKL---KSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
             +L++G    GK+ LL +    K   S +  +  D  + TV +N  ++     KL  WD
Sbjct: 8   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKV-----KLQLWD 62
Query: 75  LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 134
             GQ   R+I   YY  A  ++ V D      F + K   + V  + + + A LL++ NK
Sbjct: 63  TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE-AQLLLVGNK 121
Query: 135 QDLPD-AVSADE 145
            D+    V+AD+
Sbjct: 122 SDMETRVVTADQ 133

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/142 (20%), Positives = 66/142 (46%), Gaps = 11/142 (7%)
Query: 7   GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---- 62
           G  K   ++  + +++ G    GK++ L +L       +    + I  T+G++       
Sbjct: 18  GSAKSFSSQKAYKIVLAGDAAVGKSSFLMRL------CKNEFRENISATLGVDFQMKTLI 71
Query: 63  IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED 122
           ++   + L  WD  GQ   RSI + Y+ +A  V+ + D  C   F + +  ++ ++ +  
Sbjct: 72  VDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVD-MIEDAA 130
Query: 123 LQGAPLLILANKQDLPDAVSAD 144
            +  P++++ NK D+ D  + +
Sbjct: 131 HETVPIMLVGNKADIRDTAATE 152

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 13/127 (10%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSN---VEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
           F +L++G    GKT +L +      N   +  +  D  + T+ L+  RI     KL  WD
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRI-----KLQIWD 63
Query: 75  LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL--LILA 132
             GQ   R+I   YY  A  ++ V D      F++ +  +  +   E+   A +  +IL 
Sbjct: 64  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNI---EEHASADVEKMILG 120
Query: 133 NKQDLPD 139
           NK D+ D
Sbjct: 121 NKCDVND 127

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 12/131 (9%)
Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSK--LVFWDL 75
           +L++G    GK+ LL +       VE       + T+G++  I  ++++  K  L  WD 
Sbjct: 6   ILLIGDSGVGKSCLLVRF------VEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDT 59
Query: 76  GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
            GQ   R+I   YY  A  ++ V D      F + K   + V  + + + A LL++ NK 
Sbjct: 60  AGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDE-AQLLLVGNKS 118
Query: 136 DLPD-AVSADE 145
           D+    V+AD+
Sbjct: 119 DMETRVVTADQ 129

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 13/140 (9%)
Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVF 72
           TE+ ++++G D  GK+ L  +L      ++    D   PT+  +  +   I+     L  
Sbjct: 3   TEYKLVVVGADGVGKSALTIQL------IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 56
Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
            D  GQ    ++ ++Y       + V        FED     E++ R +D +  P++++ 
Sbjct: 57  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Query: 133 NKQDLP----DAVSADELAR 148
           NK DLP    D   A +LAR
Sbjct: 117 NKSDLPSRTVDTKQAQDLAR 136

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 13/127 (10%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSN---VEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
           F +L++G    GKT +L +      N   +  +  D  + T+ L+  RI     KL  WD
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRI-----KLQIWD 61
Query: 75  LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL--LILA 132
             GQ   R+I   YY  A  ++ V D      F++ +  +  +   E+   A +  +IL 
Sbjct: 62  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNI---EEHASADVEKMILG 118
Query: 133 NKQDLPD 139
           NK D+ D
Sbjct: 119 NKCDVND 125

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 11/124 (8%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSK--LVF 72
           +  V+I+G    GKT+L+E+        +    +    TVG++  I  +E+   K  L  
Sbjct: 26  KLQVIIIGSRGVGKTSLMERF------TDDTFCEACKSTVGVDFKIKTVELRGKKIRLQI 79
Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
           WD  GQ    SI   YY  A  ++ V D      F+D    + K++     + A LL++ 
Sbjct: 80  WDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWM-KMIDKYASEDAELLLVG 138
Query: 133 NKQD 136
           NK D
Sbjct: 139 NKLD 142

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 20/150 (13%)
Query: 15  KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----SK 69
           K    V+ILG    GKT+L+ +       V      +   T+G +    EV+      + 
Sbjct: 6   KNILKVIILGDSGVGKTSLMHRY------VNDKYSQQYKATIGADFLTKEVTVDGDKVAT 59
Query: 70  LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA--- 126
           +  WD  GQ   +S+   +Y  A   V V D    S FE+ K+  ++ L + ++      
Sbjct: 60  MQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETF 119
Query: 127 PLLILANKQDLPDA------VSADELARYL 150
           P +IL NK D  ++       SA ELA+ L
Sbjct: 120 PFVILGNKIDAEESKKIVSEKSAQELAKSL 149

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 12/138 (8%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KLVFW 73
           F +LI+G    GKT+ L +    Y++    P    V TVG++     +  +    KL  W
Sbjct: 6   FKILIIGNSSVGKTSFLFR----YADDSFTPA--FVSTVGIDFKVKTIYRNDKRIKLQIW 59
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY  A   + + D      F ++       ++      A +L++ N
Sbjct: 60  DTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGN 118
Query: 134 KQDLPDA-VSADELARYL 150
           K D+ D  V + E  R L
Sbjct: 119 KCDMEDERVVSSERGRQL 136

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 15/159 (9%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI----GRIEVSNSKLVF 72
           +F ++ LG    GKT+L+ +   +Y + +         T+G++       +E    +L  
Sbjct: 6   KFKLVFLGEQSVGKTSLITRF--MYDSFDNTYQ----ATIGIDFLSKTMYLEDRTIRLQL 59
Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
           WD  GQ   RS+   Y  ++ A V V D    + F+ +   ++ V R E      ++++ 
Sbjct: 60  WDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVG 118
Query: 133 NKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169
           NK DL D   VS +E  R    K+L+       A +GY+
Sbjct: 119 NKTDLADKRQVSIEEGER--KAKELNVMFIETSAKAGYN 155

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 20/140 (14%)
Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---------SNSK- 69
           +L LG    GKTT L +    Y++ +  P  + + TVG++     V         S+ K 
Sbjct: 28  LLALGDSGVGKTTFLYR----YTDNKFNP--KFITTVGIDFREKRVVYNAQGPNGSSGKA 81
Query: 70  ----LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
               L  WD  GQ   RS+   ++ +A   + + D      F + +  + ++  N   + 
Sbjct: 82  FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 141
Query: 126 APLLILANKQDLPDAVSADE 145
             ++++ NK DLPD    +E
Sbjct: 142 PDIVLIGNKADLPDQREVNE 161

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFW 73
           E+ +++LG    GK+ L  +       V+G+  D   PT+  +  +   ++     L   
Sbjct: 3   EYKLVVLGSGGVGKSALTVQF------VQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEIL 56
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  G     ++ + Y +       V      S F D +   E++LR +D +  P++++ N
Sbjct: 57  DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 116
Query: 134 KQDLPD 139
           K DL D
Sbjct: 117 KCDLED 122

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 13/140 (9%)
Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVF 72
           TE+ ++++G D  GK+ L  +L      ++    D   PT+  +  +   I+     L  
Sbjct: 3   TEYKLVVVGADGVGKSALTIQL------IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 56
Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
            D  GQ    ++ ++Y       + V        FED     E++ R +D +  P++++ 
Sbjct: 57  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Query: 133 NKQDLP----DAVSADELAR 148
           NK DLP    D   A +LAR
Sbjct: 117 NKCDLPSRTVDTKQAQDLAR 136

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSK--LVFWDL 75
           +L++G    GK+ LL +       VE       + T+G++  I  ++++  K  L  WD 
Sbjct: 6   ILLIGDSGVGKSCLLVRF------VEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 59
Query: 76  GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
            GQ   R+I   YY  A  ++ V D      F + K   + V  + + + A LL++ NK 
Sbjct: 60  AGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDE-AQLLLVGNKS 118
Query: 136 DLPD-AVSADE 145
           D     V+AD+
Sbjct: 119 DXETRVVTADQ 129

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 15/159 (9%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI----GRIEVSNSKLVF 72
           +F ++ LG    GKT+L+ +   +Y + +         T+G++       +E    +L  
Sbjct: 14  KFKLVFLGEQSVGKTSLITRF--MYDSFDNTYQ----ATIGIDFLSKTMYLEDRTVRLQL 67
Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
           WD  GQ   RS+   Y  ++   V V D    + F  +   ++ V R E      ++++ 
Sbjct: 68  WDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDV-RTERGSDVIIMLVG 126
Query: 133 NKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169
           NK DL D   VS +E  R    K+L+       A +GY+
Sbjct: 127 NKTDLSDKRQVSTEEGER--KAKELNVMFIETSAKAGYN 163

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 11/140 (7%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           +F +++LG  K GK++L+  L+ V           I          ++ +  K   WD  
Sbjct: 6   QFKLVLLGESKVGKSSLV--LRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA---N 133
           GQ    S+   YY  A A + V D      F  +K  ++++ R    Q +P +++A   N
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPNIVIALSGN 119
Query: 134 KQDLPD--AVSADELARYLD 151
           K DL +  AV   E   Y D
Sbjct: 120 KADLANKRAVDFQEAQSYAD 139

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 61/146 (41%), Gaps = 25/146 (17%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG-------LNIGRIEVSNSKL 70
           F V++LG    GKT+L      V    E    D+ + T+G       LNIG   V+   L
Sbjct: 7   FKVVLLGEGCVGKTSL------VLRYCENKFNDKHITTLGASFLTKKLNIGGKRVN---L 57
Query: 71  VFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT---ALEKVLRNEDLQGAP 127
             WD  GQ    ++   YY +++  + V D      F+  K     L K+L NE      
Sbjct: 58  AIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE----IC 113
Query: 128 LLILANKQDLPD--AVSADELARYLD 151
           L I+ NK DL     VS  E   Y +
Sbjct: 114 LCIVGNKIDLEKERHVSIQEAESYAE 139

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSK--LVFWDL 75
           +L++G    GK+ LL +       VE       + T+G++  I  ++++  K  L  WD 
Sbjct: 6   ILLIGDSGVGKSCLLVRF------VEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDT 59
Query: 76  GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
            GQ   R+I   YY  A  ++ V D      F + K   + V  + + + A LL++ NK 
Sbjct: 60  AGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDE-AQLLLVGNKS 118
Query: 136 DLPD-AVSADE 145
           D     V+AD+
Sbjct: 119 DXETRVVTADQ 129

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 15/159 (9%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI----GRIEVSNSKLVF 72
           +F ++ LG    GKT+L+ +   +Y + +         T+G++       +E    +L  
Sbjct: 1   KFKLVFLGEQSVGKTSLITRF--MYDSFDNTYQ----ATIGIDFLSKTMYLEDRTVRLQL 54
Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
           WD  GQ   RS+   Y  ++   V V D    + F+ +   ++ V R E      ++++ 
Sbjct: 55  WDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVG 113
Query: 133 NKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169
           NK DL D   VS +E  R    K+L+       A +GY+
Sbjct: 114 NKTDLADKRQVSIEEGER--KAKELNVMFIETSAKAGYN 150

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 9/126 (7%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFW 73
           E+ +++LG    GK+ L  +       V+G+  ++  PT+  +  +   ++     L   
Sbjct: 3   EYKLVVLGSGGVGKSALTVQF------VQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEIL 56
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  G     ++ + Y +       V      S F D +   E++LR +D +  P++++ N
Sbjct: 57  DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 116
Query: 134 KQDLPD 139
           K DL D
Sbjct: 117 KCDLED 122

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 13/128 (10%)
Query: 17  EFHVLILGIDKAGKTTLLEKLK-----SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLV 71
           ++ ++ LG    GKT+++ +       + Y +  G+  D +  T+ L+ G +     +L 
Sbjct: 1   KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGI--DFLSKTLYLDEGPV-----RLQ 53
Query: 72  FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131
            WD  GQ   RS+   Y  ++ A + V D      FE++   ++ +L NE  +   + ++
Sbjct: 54  LWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDIL-NERGKDVIIALV 112
Query: 132 ANKQDLPD 139
            NK DL D
Sbjct: 113 GNKTDLGD 120

>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor Length = 214

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 12/161 (7%)
Query: 16  TEFHVLILGIDKAGKTTLLEKL-KSVYSNVE-GLPPDRIVPTVGLNIGRIEVSNSKLVFW 73
           ++  VL +G+  +GKT L  +L    Y + +  +     +  V  N G      + L   
Sbjct: 6   SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRG------NSLTLI 59
Query: 74  DLGGQPGLR-SIWEKYYEEAHAVVFVIDAACPSR-FEDSKTALEKVLRNE-DLQGAP-LL 129
           DL G   LR  + +++   A AVVFV+D+A   R  +D    L +VL +   L+ +P LL
Sbjct: 60  DLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLL 119
Query: 130 ILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           I  NKQD+  A SA  + + L+ +    RV    A S  D 
Sbjct: 120 IACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS 160

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 46/128 (35%), Gaps = 19/128 (14%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--------RIEVSNSK 69
           F  +I+G    GK+ LL +              R  P   L IG         I+    K
Sbjct: 11  FKYIIIGDTGVGKSCLLLQF----------TDKRFQPVHDLTIGVEFGARMITIDGKQIK 60
Query: 70  LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
           L  WD  GQ   RSI   YY  A   + V D      F    T LE   R        ++
Sbjct: 61  LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDA-RQHSNSNMVIM 119
Query: 130 ILANKQDL 137
           ++ NK DL
Sbjct: 120 LIGNKSDL 127

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 15/142 (10%)
Query: 15  KTEFHVLILGIDKAGKTTLLEK-LKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLV- 71
           K    V+ILG    GKT+L+ + +   +SN       +   T+G +    EV  + +LV 
Sbjct: 6   KVLLKVIILGDSGVGKTSLMNQYVNKKFSN-------QYKATIGADFLTKEVMVDDRLVT 58
Query: 72  --FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN---EDLQGA 126
              WD  GQ   +S+   +Y  A   V V D   P+ F+   +  ++ L      D +  
Sbjct: 59  MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118
Query: 127 PLLILANKQDLPDAVSADELAR 148
           P ++L NK DL +   A + A+
Sbjct: 119 PFVVLGNKIDLENRQVATKRAQ 140

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 11/140 (7%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           +F +++LG  + GK++L+  L+ V           I          ++ +  K   WD  
Sbjct: 6   QFKLVLLGESRVGKSSLV--LRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA---N 133
           GQ    S+   YY  A A + V D      F  +K  ++++ R    Q +P +++A   N
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPNIVIALSGN 119
Query: 134 KQDLPD--AVSADELARYLD 151
           K DL +  AV   E   Y D
Sbjct: 120 KADLANKRAVDFQEAQSYAD 139

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 11/127 (8%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI----GRIEVSNSKLVF 72
           +F ++ LG    GKT+L+ +   +Y + +         T+G++       +E    +L  
Sbjct: 2   KFKLVFLGEQSVGKTSLITRF--MYDSFDNTYQ----ATIGIDFLSKTMYLEDRTVRLQL 55
Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
           WD  GQ   RS+   Y  ++   V V D    + F+ +   ++ V R E      ++++ 
Sbjct: 56  WDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDV-RTERGSDVIIMLVG 114
Query: 133 NKQDLPD 139
           NK DL D
Sbjct: 115 NKTDLAD 121

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 13/134 (9%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFW 73
           F V+++G    GK+ LL +      N+E         T+G+       +++    K   W
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLES------KSTIGVEFATRSIQVDGKTIKAQIW 83
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY  A   + V D A    +E+ +  L K LR+       ++++ N
Sbjct: 84  DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL-KELRDHADSNIVIMLVGN 142
Query: 134 KQDLPD--AVSADE 145
           K DL    AV  DE
Sbjct: 143 KSDLRHLRAVPTDE 156

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 13/134 (9%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFW 73
           F V+++G    GK+ LL +      N+E         T+G+       +++    K   W
Sbjct: 21  FKVVLIGDSGVGKSNLLSRFTRNEFNLES------KSTIGVEFATRSIQVDGKTIKAQIW 74
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY  A   + V D A    +E+ +  L K LR+       ++++ N
Sbjct: 75  DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL-KELRDHADSNIVIMLVGN 133
Query: 134 KQDLPD--AVSADE 145
           K DL    AV  DE
Sbjct: 134 KSDLRHLRAVPTDE 147

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 11/124 (8%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFW 73
           F ++++G    GK+ LL +      N++         T+G+        IE    K   W
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDS------KSTIGVEFATRTLEIEGKRIKAQIW 67
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY  A   + V D +  S +E+    L ++  N D   A  LI  N
Sbjct: 68  DTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLI-GN 126
Query: 134 KQDL 137
           K DL
Sbjct: 127 KSDL 130

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 69  KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 128
           K   WD  GQ    S+   YY  A A + V D    + FE +K  ++++      QG P 
Sbjct: 62  KFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQEL----QAQGNPN 117
Query: 129 LILA---NKQDLPDA--VSADELARY 149
           +++A   NK DL DA  V+A++   Y
Sbjct: 118 MVMALAGNKSDLLDARKVTAEDAQTY 143

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 46/128 (35%), Gaps = 19/128 (14%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--------RIEVSNSK 69
           F  +I+G    GK+ LL +              R  P   L IG         I+    K
Sbjct: 22  FKYIIIGDTGVGKSCLLLQF----------TDKRFQPVHDLTIGVEFGARMVNIDGKQIK 71
Query: 70  LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
           L  WD  GQ   RSI   YY  A   + V D      F    + LE   R        ++
Sbjct: 72  LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDA-RQHSSSNMVIM 130
Query: 130 ILANKQDL 137
           ++ NK DL
Sbjct: 131 LIGNKSDL 138

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 15/139 (10%)
Query: 18  FHVLILGIDKAGKTTLLEK-LKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLV---F 72
             V+ILG    GKT+L+ + +   +SN       +   T+G +    EV  + +LV    
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSN-------QYKATIGADFLTKEVMVDDRLVTMQI 61
Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVL---RNEDLQGAPLL 129
           WD  GQ   +S+   +Y  A   V V D   P+ F+   +  ++ L      D +  P +
Sbjct: 62  WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 130 ILANKQDLPDAVSADELAR 148
           +L NK DL +   A + A+
Sbjct: 122 VLGNKIDLENRQVATKRAQ 140

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 11/140 (7%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           +F +++LG  + GK++L+  L+ V           I          ++ +  K   WD  
Sbjct: 6   QFKLVLLGESEVGKSSLV--LRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA---N 133
           GQ    S+   YY  A A + V D      F  +K  ++++ R    Q +P +++A   N
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPNIVIALSGN 119
Query: 134 KQDLPD--AVSADELARYLD 151
           K DL +  AV   E   Y D
Sbjct: 120 KADLANKRAVDFQEAQSYAD 139

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFW 73
           E+ +++LG    GK+ L  +       V+G+  ++  PT+  +  +   ++     L   
Sbjct: 3   EYKLVVLGSGGVGKSALTVQF------VQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEIL 56
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  G     ++ + Y +       V      S F D +   E++LR +D    P++++ N
Sbjct: 57  DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGN 116
Query: 134 KQDLPD 139
           K DL D
Sbjct: 117 KCDLED 122

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           +F +++LG    GK++L+  L+ V           I          ++ +  K   WD  
Sbjct: 7   QFKLVLLGESAVGKSSLV--LRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA---N 133
           GQ    S+   YY  A A + V D      F  +K  ++++ R    Q +P +++A   N
Sbjct: 65  GQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPNIVIALSGN 120
Query: 134 KQDLPD--AVSADELARYLD 151
           K DL +  AV   E   Y D
Sbjct: 121 KADLANKRAVDFQEAQSYAD 140

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 70/149 (46%), Gaps = 17/149 (11%)
Query: 14  TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSNS--K 69
           ++    ++++G    GK++++++        +G+       T+G++    +I+V++   +
Sbjct: 2   SEVAIKMVVVGNGAVGKSSMIQRY------CKGIFTKDYKKTIGVDFLERQIQVNDEDVR 55
Query: 70  LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
           L+ WD  GQ    +I + YY  A A V V        FE   +  EKV+   ++   P  
Sbjct: 56  LMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVV--AEVGDIPTA 113
Query: 130 ILANKQDLPDAV-----SADELARYLDLK 153
           ++ NK DL D        A+ LA+ L L+
Sbjct: 114 LVQNKIDLLDDSCIKNEEAEGLAKRLKLR 142

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           +F +++LG    GK++L+  L+ V           I          ++ +  K   WD  
Sbjct: 7   QFKLVLLGESAVGKSSLV--LRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA---N 133
           GQ    S+   YY  A A + V D      F  +K  ++++ R    Q +P +++A   N
Sbjct: 65  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPNIVIALSGN 120
Query: 134 KQDLPD--AVSADELARYLD 151
           K DL +  AV   E   Y D
Sbjct: 121 KADLANKRAVDFQEAQSYAD 140

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 65/161 (40%), Gaps = 22/161 (13%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSNS--KLVFW 73
           F  L++G    GK+ LL +       +E    D    T+G+  G   I V     KL  W
Sbjct: 12  FKFLVIGNAGTGKSCLLHQF------IEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 65
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL---QGAPLLI 130
           D  GQ   RS+   YY  A   + V D    SR  ++  AL   L +  +   Q   +++
Sbjct: 66  DTAGQERFRSVTRSYYRGAAGALLVYD--ITSR--ETYNALTNWLTDARMLASQNIVIIL 121
Query: 131 LANKQDLPDAVSADELARYLDLKKL-DERVCMFEAVSGYDG 170
             NK+DL     AD    +L+  +   E   MF   S   G
Sbjct: 122 CGNKKDLD----ADREVTFLEASRFAQENELMFLETSALTG 158

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           +F +++LG    GK++L+  L+ V           I          ++ +  K   WD  
Sbjct: 6   QFKLVLLGESAVGKSSLV--LRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA---N 133
           GQ    S+   YY  A A + V D      F  +K  ++++ R    Q +P +++A   N
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPNIVIALSGN 119
Query: 134 KQDLPD--AVSADELARYLD 151
           K DL +  AV   E   Y D
Sbjct: 120 KADLANKRAVDFQEAQSYAD 139

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 65/161 (40%), Gaps = 22/161 (13%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSNS--KLVFW 73
           F  L++G    GK+ LL +       +E    D    T+G+  G   I V     KL  W
Sbjct: 11  FKFLVIGNAGTGKSCLLHQF------IEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL---QGAPLLI 130
           D  GQ   RS+   YY  A   + V D    SR  ++  AL   L +  +   Q   +++
Sbjct: 65  DTAGQERFRSVTRSYYRGAAGALLVYD--ITSR--ETYNALTNWLTDARMLASQNIVIIL 120
Query: 131 LANKQDLPDAVSADELARYLDLKKL-DERVCMFEAVSGYDG 170
             NK+DL     AD    +L+  +   E   MF   S   G
Sbjct: 121 CGNKKDLD----ADREVTFLEASRFAQENELMFLETSALTG 157

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 19/144 (13%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVF 72
           +F +++LG    GK++L+ +       V+G   +    T+G       V    +  K   
Sbjct: 8   QFKLVLLGESAVGKSSLVLRF------VKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEI 61
Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
           WD  GQ    S+   YY  A A + V D      F  +KT ++++ R    Q +P +++A
Sbjct: 62  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQR----QASPSIVIA 117
Query: 133 ---NKQDLPDA--VSADELARYLD 151
              NK DL +   V  +E   Y D
Sbjct: 118 LAGNKADLANKRMVEYEEAQAYAD 141

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 11/126 (8%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KLVFW 73
           F +L++G    GKT+ L +    Y++    P    V TVG++     V       KL  W
Sbjct: 23  FKLLLIGNSSVGKTSFLFR----YADDSFTPA--FVSTVGIDFKVKTVYRHDKRIKLQIW 76
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY  A   + + D A    F   +    ++ +      A ++++ N
Sbjct: 77  DTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI-KTYSWDNAQVILVGN 135
Query: 134 KQDLPD 139
           K DL D
Sbjct: 136 KCDLED 141

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 13/144 (9%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFW 73
           F V+++G    GK+ LL +      N+E         T+G+       +++    K   W
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKS------TIGVEFATRSIQVDGKTIKAQIW 59
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R I   YY  A   + V D A    +E+ +  L K LR+       ++++ N
Sbjct: 60  DTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWL-KELRDHADSNIVIMLVGN 118
Query: 134 KQDLPD--AVSADELARYLDLKKL 155
           K DL    AV  DE   + +   L
Sbjct: 119 KSDLRHLRAVPTDEARAFAEKNNL 142

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 19  HVLILGIDKAGKTTLLEK-LKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLV---FW 73
            V+ILG    GKT+L+ + +   +SN       +   T+G +    EV  + +LV    W
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSN-------QYKATIGADFLTKEVMVDDRLVTMQIW 62
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVL---RNEDLQGAPLLI 130
           D  GQ   +S+   +Y  A   V V D   P+ F+   +  ++ L      D +  P ++
Sbjct: 63  DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 122
Query: 131 LANKQDLPDAVSADELAR 148
           L NK D  +   A + A+
Sbjct: 123 LGNKIDFENRQVATKRAQ 140

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFW 73
           E+ +++LG    GK+ L  +       V+G+  ++  PT+  +  +   ++     L   
Sbjct: 5   EYKLVVLGSVGVGKSALTVQF------VQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEIL 58
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  G     ++ + Y +       V      S F D +   E++LR +D    P++++ N
Sbjct: 59  DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGN 118
Query: 134 KQDLPD 139
           K DL D
Sbjct: 119 KCDLED 124

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           +F +++LG    GK++L+  L+ V           I          ++ +  K   WD  
Sbjct: 6   QFKLVLLGESPVGKSSLV--LRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA---N 133
           GQ    S+   YY  A A + V D      F  +K  ++++ R    Q +P +++A   N
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPNIVIALSGN 119
Query: 134 KQDLPD--AVSADELARYLD 151
           K DL +  AV   E   Y D
Sbjct: 120 KADLANKRAVDFQEAQSYAD 139

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 13/140 (9%)
Query: 18  FHVLILGIDKAGKTTL-LEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           F V++LG    GKT+L L   ++ +++           T  LNIG   V+   L  WD  
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVN---LAIWDTA 63
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT---ALEKVLRNEDLQGAPLLILAN 133
           GQ    ++   YY +++  + V D      F+  K     L K+L NE      L I+ N
Sbjct: 64  GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE----ICLCIVGN 119
Query: 134 KQDLPD--AVSADELARYLD 151
           K DL     VS  E   Y +
Sbjct: 120 KIDLEKERHVSIQEAESYAE 139

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 13/140 (9%)
Query: 18  FHVLILGIDKAGKTTL-LEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           F V++LG    GKT+L L   ++ +++           T  LNIG   V+   L  WD  
Sbjct: 21  FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVN---LAIWDTA 77
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKT---ALEKVLRNEDLQGAPLLILAN 133
           GQ    ++   YY +++  + V D      F+  K     L K+L NE      L I+ N
Sbjct: 78  GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE----ICLCIVGN 133
Query: 134 KQDLPD--AVSADELARYLD 151
           K DL     VS  E   Y +
Sbjct: 134 KIDLEKERHVSIQEAESYAE 153

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           +F +++LG    GK++L+  L+ V           I          ++ +  K   WD  
Sbjct: 6   QFKLVLLGESLVGKSSLV--LRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA---N 133
           GQ    S+   YY  A A + V D      F  +K  ++++ R    Q +P +++A   N
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR----QASPNIVIALSGN 119
Query: 134 KQDLPD--AVSADELARYLD 151
           K DL +  AV   E   Y D
Sbjct: 120 KADLANKRAVDFQEAQSYAD 139

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSNS--KLVF 72
           E  V +LG    GK+++      V+  VE      I PT+G +     ++  N   K + 
Sbjct: 5   ELKVCLLGDTGVGKSSI------VWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLI 58
Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
           WD  GQ   R++   YY  + A + V D       E++ + L+  +R     G P +++A
Sbjct: 59  WDTAGQERFRALAPMYYRGSAAAIIVYDITK----EETFSTLKNWVRELRQHGPPSIVVA 114
Query: 133 ---NKQDLPD 139
              NK DL D
Sbjct: 115 IAGNKCDLTD 124

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 11/140 (7%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           +F +++LG    GK++L+  L+ V           I          ++ +  K   WD  
Sbjct: 5   QFKLVLLGESAVGKSSLV--LRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA---N 133
           GQ    S+   YY  A A + V D      F  +K  ++++ R    Q +P +++A   N
Sbjct: 63  GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR----QASPNIVIALAGN 118
Query: 134 KQDLPD--AVSADELARYLD 151
           K DL    AV   E   Y D
Sbjct: 119 KADLASKRAVEFQEAQAYAD 138

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 20/140 (14%)
Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS------------- 66
           +L LG    GKTT L +    Y++ +  P  + + TVG++     V              
Sbjct: 14  LLALGDSGVGKTTFLYR----YTDNKFNP--KFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 67  -NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
               L  WD  G    RS+   ++ +A   + + D      F + +  + ++  N   + 
Sbjct: 68  FKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 127
Query: 126 APLLILANKQDLPDAVSADE 145
             ++++ NK DLPD    +E
Sbjct: 128 PDIVLIGNKADLPDQREVNE 147

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 11/140 (7%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           +F +++LG    GK++L+  L+ V           I          ++ +  K   WD  
Sbjct: 3   QFKLVLLGESAVGKSSLV--LRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 60
Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA---N 133
           GQ    S+   YY  A A + V D      F  +K  ++++ R    Q +P +++A   N
Sbjct: 61  GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR----QASPNIVIALAGN 116
Query: 134 KQDLPD--AVSADELARYLD 151
           K DL    AV   E   Y D
Sbjct: 117 KADLASKRAVEFQEAQAYAD 136

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 11/126 (8%)
Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KLVFW 73
           F +LI+G    GKT+ L +    Y++    P    V TVG++     V       KL  W
Sbjct: 24  FKLLIIGNSSVGKTSFLFR----YADDTFTPA--FVSTVGIDFKVKTVYRHEKRVKLQIW 77
Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY  A   + + D      F   +    ++ +      A ++++ N
Sbjct: 78  DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQI-KTYSWDNAQVILVGN 136
Query: 134 KQDLPD 139
           K D+ +
Sbjct: 137 KCDMEE 142

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 15/159 (9%)
Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR----IEVSNSKLVF 72
           +F ++ LG    GKT+L+ +   +Y + +    +    T+G++       +E    +L  
Sbjct: 13  KFKLVFLGEQSVGKTSLITRF--MYDSFD----NTYQATIGIDFLSKTMYLEDRTIRLQL 66
Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
           WD  G    RS+   Y  ++ A V V D    + F+ +   ++ V R E      ++++ 
Sbjct: 67  WDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVG 125
Query: 133 NKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD 169
           NK DL D   VS +E  R    K+L+       A +GY+
Sbjct: 126 NKTDLADKRQVSIEEGER--KAKELNVMFIETSAKAGYN 162

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	170
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	6e-72
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	8e-72
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	6e-71
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	8e-70
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	2e-69
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	7e-69
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	3e-68
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	6e-68
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	1e-67
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	4e-66
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	2e-64
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	5e-64
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	4e-61
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	4e-55
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-50
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	1e-44
2fh5_B	214	SR-beta, signal recognition particle receptor beta	4e-43
2ged_A	193	SR-beta, signal recognition particle receptor beta	2e-39
1nrj_B	218	SR-beta, signal recognition particle receptor beta	3e-38
3llu_A	196	RAS-related GTP-binding protein C; structural geno	2e-26
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	2e-20
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	5e-17
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	2e-15
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	2e-13
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	2e-10
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	3e-10
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	1e-09
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	2e-09
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	2e-09
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	2e-09
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	3e-09
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	3e-09
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	8e-09
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	1e-08
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	1e-08
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	2e-08
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	2e-08
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	2e-08
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	2e-08
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	3e-08
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	3e-08
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	4e-08
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	5e-08
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	8e-08
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	8e-08
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	9e-08
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	1e-07
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	1e-07
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-07
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	1e-07
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	1e-07
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-07
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	2e-07
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	2e-07
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	2e-07
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	2e-07
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	2e-07
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	3e-07
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	3e-07
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	4e-07
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	5e-07
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	5e-07
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	5e-07
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	6e-07
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	6e-07
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	7e-07
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	7e-07
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	8e-07
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	8e-07
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	9e-07
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	9e-07
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-06
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-06
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-06
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	1e-06
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-06
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	1e-06
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	2e-06
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	2e-06
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	2e-06
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	2e-06
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	2e-06
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	2e-06
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	3e-06
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	3e-06
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	4e-06
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	4e-06
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	4e-06
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	4e-06
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	5e-06
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	5e-06
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	6e-06
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	6e-06
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	8e-06
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	8e-06
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	1e-05
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-05
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-05
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	1e-05
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	2e-05
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	2e-05
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	2e-05
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	2e-05
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	2e-05
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	2e-05
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	4e-05
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	4e-05
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	4e-05
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	5e-05
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	6e-05
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	7e-05
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	1e-04
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-04
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	1e-04
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	2e-04
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	4e-04
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	5e-04
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	6e-04

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score =  214 bits (546), Expect = 6e-72
 Identities = 57/170 (33%), Positives = 92/170 (54%), Gaps = 8/170 (4%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
           M  LF  +W+ +F   E  V+I+G+D AGKTT+L +                 PT+G N+
Sbjct: 1   MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFS-------MNEVVHTSPTIGSNV 52

Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
             I ++N++ + WD+GGQ  LRS W  YY     V+ V+D+    R   ++  L K+L +
Sbjct: 53  EEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH 112

Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           EDL+ A LLI ANKQD+ + ++  E++++L L  + +     +A     G
Sbjct: 113 EDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTG 162

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score =  213 bits (545), Expect = 8e-72
 Identities = 64/167 (38%), Positives = 89/167 (53%), Gaps = 7/167 (4%)

Query: 4   LFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI 63
           L   L K    + E  +L+LG+D AGKTT+L+K         G   D I PT+G NI  +
Sbjct: 5   LLTILKKMKQKERELRLLMLGLDNAGKTTILKKFN-------GEDVDTISPTLGFNIKTL 57

Query: 64  EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL 123
           E    KL  WD+GGQ  LRS W  Y+E    +++V+D+A   R +D +  L+ +L  E L
Sbjct: 58  EHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL 117

Query: 124 QGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
            GA LLI ANKQDLP A+S + +   L+L  +       +  S   G
Sbjct: 118 AGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTG 164

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score =  210 bits (538), Expect = 6e-71
 Identities = 62/170 (36%), Positives = 89/170 (52%), Gaps = 9/170 (5%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
           + S+   L        E  +L+LG+D AGKTTLL++L              I PT G NI
Sbjct: 2   LLSILRKLKS--APDQEVRILLLGLDNAGKTTLLKQLA-------SEDISHITPTQGFNI 52

Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
             ++    KL  WD+GGQ  +R  W  Y+E    +++VID+A   RFE++   L ++L  
Sbjct: 53  KSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEE 112

Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           E L   P+LI ANKQDL  A  A E+A  L+L  + +RV   ++ S   G
Sbjct: 113 EKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTG 162

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score =  208 bits (531), Expect = 8e-70
 Identities = 63/171 (36%), Positives = 95/171 (55%), Gaps = 8/171 (4%)

Query: 1   MFSLFYGLWKYIF-TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN 59
           M ++F  ++  ++ +  E  +LILG+D AGKTT+L +L+               PT+G N
Sbjct: 1   MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGE-------VVTTKPTIGFN 53

Query: 60  IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
           +  +   N KL  WDLGGQ  +R  W  YY +  AV+FV+D+    R   +   L  +L+
Sbjct: 54  VETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQ 113

Query: 120 NEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
            E+LQ A LL+ ANKQD P A+SA E+++ L+L +L +R     A S   G
Sbjct: 114 EEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKG 164

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score =  207 bits (529), Expect = 2e-69
 Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 7/164 (4%)

Query: 7   GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS 66
           GL     +K E  + ++G+  +GKTT +  + S      G   + ++PTVG N+ +I   
Sbjct: 13  GLVPR-GSKEEMELTLVGLQYSGKTTFVNVIAS------GQFNEDMIPTVGFNMRKITKG 65

Query: 67  NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA 126
           N  +  WD+GGQP  RS+WE+Y     A+V+++DAA   + E SK  L  +L    LQG 
Sbjct: 66  NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGI 125

Query: 127 PLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           P+L+L NK+DLP A+   EL   ++L  + +R     ++S  + 
Sbjct: 126 PVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEK 169

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score =  206 bits (526), Expect = 7e-69
 Identities = 58/173 (33%), Positives = 87/173 (50%), Gaps = 10/173 (5%)

Query: 1   MFSLFYGLWKYI---FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG 57
           M +    L + +       +  VL+LG+D AGKT++L +L               VPTVG
Sbjct: 3   MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLH-------LGDVVTTVPTVG 55

Query: 58  LNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKV 117
           +N+  ++  N     WDLGGQ G+R  W  Y+ +  AV++V+D+    R   +K  L  +
Sbjct: 56  VNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYAL 115

Query: 118 LRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           L  ++L+ + LLI ANKQDLPDA S  E+A  L +  +  R       S   G
Sbjct: 116 LDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTG 168

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score =  204 bits (522), Expect = 3e-68
 Identities = 57/163 (34%), Positives = 91/163 (55%), Gaps = 7/163 (4%)

Query: 8   LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN 67
           L+  IF K +  +L++G+D AGKTT+L KLK              +PT+G N+  +E  N
Sbjct: 20  LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGE-------IVTTIPTIGFNVETVEYKN 72

Query: 68  SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP 127
                WD+GGQ  +R +W  Y++    ++FV+D+    R ++S   L+K+L+ ++L+ A 
Sbjct: 73  ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV 132

Query: 128 LLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           LL+ ANKQD+P+A+   EL   L L+ L  R    +A     G
Sbjct: 133 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQG 175

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score =  203 bits (519), Expect = 6e-68
 Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 9/164 (5%)

Query: 7   GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS 66
           GL        E  V+I+G+D AGKTT+L +                 PT+G N+  I ++
Sbjct: 13  GLVP--RGSQEHKVIIVGLDNAGKTTILYQFS-------MNEVVHTSPTIGSNVEEIVIN 63

Query: 67  NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA 126
           N++ + WD+GGQ  LRS W  YY     V+ V+D+    R   ++  L K+L +EDL+ A
Sbjct: 64  NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKA 123

Query: 127 PLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
            LLI ANKQD+ + ++  E++++L L  + +     +A     G
Sbjct: 124 GLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTG 167

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score =  202 bits (517), Expect = 1e-67
 Identities = 55/166 (33%), Positives = 91/166 (54%), Gaps = 9/166 (5%)

Query: 7   GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS 66
           GL        E HVL LG+D +GKTT++ KLK             I+PT+G +I + + S
Sbjct: 13  GLVP--RGSKEVHVLCLGLDNSGKTTIINKLKP-----SNAQSQNILPTIGFSIEKFKSS 65

Query: 67  NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG- 125
           +     +D+ GQ   R++WE YY+E  A++FVID++   R   +K  L+ +L + D++  
Sbjct: 66  SLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHR 125

Query: 126 -APLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
             P+L  ANK DL DAV++ ++++ L L+ + ++     A     G
Sbjct: 126 RIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKG 171

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score =  198 bits (506), Expect = 4e-66
 Identities = 55/158 (34%), Positives = 81/158 (51%), Gaps = 7/158 (4%)

Query: 13  FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF 72
               E  +LILG+D AGKTT+L +L+              +PT+G N+  +   N K   
Sbjct: 3   HMTREMRILILGLDGAGKTTILYRLQ-------VGEVVTTIPTIGFNVETVTYKNLKFQV 55

Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
           WDLGG   +R  W  YY    AV++V+D+    R   SK+ L  +L  E+L+ A L++ A
Sbjct: 56  WDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFA 115

Query: 133 NKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           NKQD+  A+++ E+A  L L  L +R       S   G
Sbjct: 116 NKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKG 153

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score =  194 bits (495), Expect = 2e-64
 Identities = 52/152 (34%), Positives = 84/152 (55%), Gaps = 7/152 (4%)

Query: 19  HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78
            +L++G+D AGKTT+L KLK              +PT+G N+  +E  N     WD+GGQ
Sbjct: 2   RILMVGLDAAGKTTILYKLK-------LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 54

Query: 79  PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138
             +R +W  Y++    ++FV+D+    R  +++  L ++L  ++L+ A LL+ ANKQDLP
Sbjct: 55  DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114

Query: 139 DAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           +A++A E+   L L  L  R    +A     G
Sbjct: 115 NAMNAAEITDKLGLHSLRHRNWYIQATCATSG 146

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score =  193 bits (494), Expect = 5e-64
 Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 8/159 (5%)

Query: 1   MFSLFYGLWKYI-FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN 59
           +F  F  +   +        +L LG+D AGKTTLL  LK             + PT    
Sbjct: 6   IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLK-------NDRLATLQPTWHPT 58

Query: 60  IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
              + + N K   +DLGG    R +W+ Y+ E + +VF++DAA P RF++++  L+ +  
Sbjct: 59  SEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFN 118

Query: 120 NEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 158
             +L+  P +IL NK D P+AVS  EL   L L      
Sbjct: 119 IAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGS 157

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score =  186 bits (475), Expect = 4e-61
 Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 8/156 (5%)

Query: 1   MFSLFYGLWKYI-FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN 59
           ++S F  + +++   K    ++ LG+D AGKTTLL  LK              VPT+   
Sbjct: 8   IYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-------HVPTLHPT 60

Query: 60  IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR 119
              + ++      +DLGG    R +W+ Y    + +VF++D A   R  +SK  L+ ++ 
Sbjct: 61  SEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 120

Query: 120 NEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL 155
           +E +   P+LIL NK D P+A+S + L     L   
Sbjct: 121 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQ 156

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score =  175 bits (446), Expect = 4e-55
 Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 7/170 (4%)

Query: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60
             +      + +F K E  +L++G+D AGKTT+L KLK              +PT+G N+
Sbjct: 149 AQNWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLK-------LGEIVTTIPTIGFNV 201

Query: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120
             +E  N     WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L ++L  
Sbjct: 202 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 261

Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           ++L+ A LL+ ANKQDLP+A++A E+   L L  L  R    +A     G
Sbjct: 262 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSG 311

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score =  145 bits (367), Expect = 1e-44
 Identities = 33/165 (20%), Positives = 67/165 (40%), Gaps = 18/165 (10%)

Query: 15  KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP----PDRIVPTVGLNIGRIEVS---- 66
           +  F ++  G   +GKTT L+ + S                   T+  +   +++     
Sbjct: 12  EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKG 71

Query: 67  -NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN----- 120
             ++   + + GQ    +  +        +VFV D+A P+R   +  ++  +  N     
Sbjct: 72  FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSA-PNRLRANAESMRNMRENLAEYG 130

Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAV 165
             L   P++I  NK+DLPDA+  + +   +D    + +  + EAV
Sbjct: 131 LTLDDVPIVIQVNKRDLPDALPVEMVRAVVD---PEGKFPVLEAV 172

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score =  141 bits (358), Expect = 4e-43
 Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 14/163 (8%)

Query: 15  KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK---LV 71
            ++  VL +G+  +GKT L  +L +               ++  +    +V+N++   L 
Sbjct: 5   SSQRAVLFVGLCDSGKTLLFVRLLTG-------QYRDTQTSITDSSAIYKVNNNRGNSLT 57

Query: 72  FWDLGGQPGLR-SIWEKYYEEAHAVVFVIDAACPSRF-EDSKTALEKVLRNEDL--QGAP 127
             DL G   LR  + +++   A AVVFV+D+A   R  +D    L +VL +         
Sbjct: 58  LIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPS 117

Query: 128 LLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           LLI  NKQD+  A SA  + + L+ +    RV    A S  D 
Sbjct: 118 LLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS 160

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score =  131 bits (331), Expect = 2e-39
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 16/146 (10%)

Query: 15  KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
             +  ++I G   +GKT+LL  L +     + + P   V +    +   +   S +   D
Sbjct: 46  SYQPSIIIAGPQNSGKTSLLTLLTT-----DSVRP--TVVSQE-PLSAADYDGSGVTLVD 97

Query: 75  LGGQPGLRSIWEKYYEE----AHAVVFVIDAAC-PSRFEDSKTALEKVLRNEDL---QGA 126
             G   LR     Y +        ++F++D+   P +   +   L  +L   +     G 
Sbjct: 98  FPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGI 157

Query: 127 PLLILANKQDLPDAVSADELARYLDL 152
            +LI  NK +L  A    ++   L+ 
Sbjct: 158 DILIACNKSELFTARPPSKIKDALES 183

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score =  129 bits (325), Expect = 3e-38
 Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 23/154 (14%)

Query: 7   GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG--LNIGRIE 64
           G+ +      +  ++I G   +GKT+LL  L +          D + PTV     +   +
Sbjct: 5   GIKQ---KSYQPSIIIAGPQNSGKTSLLTLLTT----------DSVRPTVVSQEPLSAAD 51

Query: 65  VSNSKLVFWDLGGQPGLRSIWEKYYEEA----HAVVFVIDAAC-PSRFEDSKTALEKVLR 119
              S +   D  G   LR     Y +        ++F++D+   P +   +   L  +L 
Sbjct: 52  YDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILS 111

Query: 120 NEDL---QGAPLLILANKQDLPDAVSADELARYL 150
             +     G  +LI  NK +L  A    ++   L
Sbjct: 112 ITESSCENGIDILIACNKSELFTARPPSKIKDAL 145

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 98.1 bits (244), Expect = 2e-26
 Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 15/172 (8%)

Query: 10  KYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNS 68
              F  ++  +L++G+ ++GK+++    K V+  +       +  T  +    I   S  
Sbjct: 13  NLYFQGSKPRILLMGLRRSGKSSIQ---KVVFHKMSPNETLFLESTNKIYKDDISNSSFV 69

Query: 69  KLVFWDLGGQPGLRSIW---EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
               WD  GQ          E  +    A+++VIDA        ++  +      +    
Sbjct: 70  NFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPD 129

Query: 126 APLLILANKQDLPDAVSADELARYLDLKKLDE--------RVCMFEAVSGYD 169
               +  +K D        E  R +  +  D+            F   S YD
Sbjct: 130 MNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD 181

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 84.7 bits (209), Expect = 2e-20
 Identities = 27/163 (16%), Positives = 60/163 (36%), Gaps = 16/163 (9%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE-VSNSKLVFWDLGGQ 78
           +L++G   +GK+++      ++SN       R+  T+ +    +  + N  L  WD GGQ
Sbjct: 6   LLLMGRSGSGKSSMR---SIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQ 62

Query: 79  -----PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL-QGAPLLILA 132
                       +  ++    ++ V D       +D +   + + +       A + +L 
Sbjct: 63  DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLL 122

Query: 133 NKQDLPDAVSADELARYL------DLKKLDERVCMFEAVSGYD 169
           +K DL      +EL + +         +      +    S +D
Sbjct: 123 HKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD 165

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227

 Score = 74.3 bits (182), Expect = 5e-17
 Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 6/89 (6%)

Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL----QGAPL 128
              G +  +    +K  E     ++V +A    R E        ++   D      G PL
Sbjct: 107 DQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQD-EFSHIMAMTDPAFGSSGRPL 165

Query: 129 LIL-ANKQDLPDAVSADELARYLDLKKLD 156
           L+L    Q     +    LA  L L  L+
Sbjct: 166 LVLSCISQGDVKRMPCFYLAHELHLNLLN 194

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 70.9 bits (173), Expect = 2e-15
 Identities = 30/163 (18%), Positives = 65/163 (39%), Gaps = 19/163 (11%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
           VL++G+ + GK+++    K V+ N++ L    +  T   ++     +   L   +L GQ 
Sbjct: 2   VLLMGVRRCGKSSIC---KVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQL 57

Query: 80  GLRSIW---EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN--EDLQGAPLLILANK 134
                    E+ ++   A+V+VID+     + ++ T L  ++    +      + +L +K
Sbjct: 58  NYFEPSYDSERLFKSVGALVYVIDSQ--DEYINAITNLAMIIEYAYKVNPSINIEVLIHK 115

Query: 135 QDLPDAVSADELARYLDLKKLDE--------RVCMFEAVSGYD 169
            D        +  R +  +  +E            F   S +D
Sbjct: 116 VDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD 158

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 65.9 bits (160), Expect = 2e-13
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 6/88 (6%)

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL----QGAPLL 129
             G +  +    +K  E     ++V +A    R E        ++   D      G PLL
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQD-EFSHIMAMTDPAFGSSGRPLL 251

Query: 130 ILA-NKQDLPDAVSADELARYLDLKKLD 156
           +L+   Q     +    LA  L L  L+
Sbjct: 252 VLSCISQGDVKRMPCFYLAHELHLNLLN 279

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 27/147 (18%)

Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF--- 72
           TE+ ++++G    GK+ L  +L      ++    D   PT       IE S  K V    
Sbjct: 20  TEYKLVVVGAGGVGKSALTIQL------IQNHFVDEYDPT-------IEDSYRKQVVIDG 66

Query: 73  -------WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
                   D  GQ    ++ ++Y       + V        F D     E++ R +D   
Sbjct: 67  ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDD 126

Query: 126 APLLILANKQDLPD-AVSADE---LAR 148
            P++++ NK DLP   V   +   LA+
Sbjct: 127 VPMVLVGNKCDLPTRTVDTKQAHELAK 153

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 54.8 bits (133), Expect = 3e-10
 Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 28/148 (18%)

Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF--- 72
            E+ +++LG    GK+ L  +       V+G+  ++  PT       IE S  K V    
Sbjct: 2   REYKLVVLGSGGVGKSALTVQF------VQGIFVEKYDPT-------IEDSYRKQVEVDC 48

Query: 73  -------WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
                   D  G     ++ + Y +       V      S F D +   E++LR +D + 
Sbjct: 49  QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED 108

Query: 126 APLLILANKQDLPD--AVSADE---LAR 148
            P++++ NK DL D   V  ++   LAR
Sbjct: 109 VPMILVGNKCDLEDERVVGKEQGQNLAR 136

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 52.9 bits (128), Expect = 1e-09
 Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 27/147 (18%)

Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF--- 72
           TE+ ++++G    GK+ L  +L      ++    D   PT       IE S  K V    
Sbjct: 2   TEYKLVVVGAGGVGKSALTIQL------IQNHFVDECDPT-------IEDSYRKQVVIDG 48

Query: 73  -------WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
                   D  GQ    ++ ++Y       + V        FED     E++ R +D   
Sbjct: 49  ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108

Query: 126 APLLILANKQDLPD-AVSADE---LAR 148
            P++++ NK DL    V + +   LAR
Sbjct: 109 VPMVLVGNKSDLAARTVESRQAQDLAR 135

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 27/147 (18%)

Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF--- 72
           TE+ ++++G D  GK+ L  +L      ++    D   PT       IE S  K V    
Sbjct: 3   TEYKLVVVGADGVGKSALTIQL------IQNHFVDEYDPT-------IEDSYRKQVVIDG 49

Query: 73  -------WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
                   D  GQ    ++ ++Y       + V        FED     E++ R +D + 
Sbjct: 50  ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED 109

Query: 126 APLLILANKQDLPD-AVSADE---LAR 148
            P++++ NK DLP   V   +   LAR
Sbjct: 110 VPMVLVGNKCDLPSRTVDTKQAQDLAR 136

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 54.6 bits (131), Expect = 2e-09
 Identities = 27/149 (18%), Positives = 55/149 (36%), Gaps = 25/149 (16%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS-------- 68
           E  V ++G   AGKT+LL++L      +      +   T GLN+   +  N         
Sbjct: 41  EIKVHLIGDGMAGKTSLLKQL------IGETFDPKESQTHGLNVVTKQAPNIKGLENDDE 94

Query: 69  ----KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQ 124
                  FWD GGQ  + +  + +   +   + ++D        +    L  + +     
Sbjct: 95  LKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLD---SRTDSNKHYWLRHIEKYGG-- 149

Query: 125 GAPLLILANKQDLPD--AVSADELARYLD 151
            +P++++ NK D      +   ++     
Sbjct: 150 KSPVIVVMNKIDENPSYNIEQKKINERFP 178

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 52.9 bits (128), Expect = 2e-09
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 16/142 (11%)

Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSNS--KLV 71
            E+ V++LG    GK+ L  +       V G   ++  PT+  +  R  IEV +S   L 
Sbjct: 2   REYKVVVLGSGGVGKSALTVQF------VTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLE 54

Query: 72  FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131
             D  G     S+ + Y +     + V        F+D K   ++++R +  +  P++++
Sbjct: 55  ILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILV 114

Query: 132 ANKQDLPD--AVSADE---LAR 148
            NK DL     VS+ E   LA 
Sbjct: 115 GNKVDLESEREVSSSEGRALAE 136

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402

 Score = 53.7 bits (128), Expect = 3e-09
 Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 53  VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC--------- 103
           V T G+   + +V       +D+GGQ   R  W + + +  A++FV+ ++          
Sbjct: 202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 261

Query: 104 -PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
             +R +++    + +  N  L+   +++  NKQDL
Sbjct: 262 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score = 52.2 bits (126), Expect = 3e-09
 Identities = 31/148 (20%), Positives = 56/148 (37%), Gaps = 28/148 (18%)

Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF--- 72
             + ++++G    GK+ L  +        + +  D   PT       IE S  K      
Sbjct: 17  PTYKLVVVGDGGVGKSALTIQF------FQKIFVDDYDPT-------IEDSYLKHTEIDN 63

Query: 73  -------WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
                   D  GQ    ++ E+Y       + V      + FE      + +LR +D + 
Sbjct: 64  QWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRES 123

Query: 126 APLLILANKQDLPD--AVSADE---LAR 148
            P++++ANK DL     V+ D+   +A 
Sbjct: 124 FPMILVANKVDLMHLRKVTRDQGKEMAT 151

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 51.4 bits (124), Expect = 8e-09
 Identities = 35/147 (23%), Positives = 54/147 (36%), Gaps = 28/147 (19%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF---- 72
              + ILG    GK++L  +       VEG   D   PT       IE + +KL+     
Sbjct: 6   SRKIAILGYRSVGKSSLTIQF------VEGQFVDSYDPT-------IENTFTKLITVNGQ 52

Query: 73  ------WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA 126
                  D  GQ       + Y  + +  + V        FE  K    K+L        
Sbjct: 53  EYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQI 112

Query: 127 PLLILANKQDLPD--AVSADE---LAR 148
           P++++ NK+DL     +S +E   LA 
Sbjct: 113 PIMLVGNKKDLHMERVISYEEGKALAE 139

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 51.0 bits (123), Expect = 1e-08
 Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 28/147 (19%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF---- 72
              ++++G    GK+ L  +       ++        PT       IE S +K+      
Sbjct: 9   THKLVVVGGGGVGKSALTIQF------IQSYFVSDYDPT-------IEDSYTKICSVDGI 55

Query: 73  ------WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA 126
                  D  GQ    ++ E+Y    H  + V        F +      ++LR +D    
Sbjct: 56  PARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDF 115

Query: 127 PLLILANKQDLPD--AVSADE---LAR 148
           P++++ NK DL     V   E      
Sbjct: 116 PVVLVGNKADLESQRQVPRSEASAFGA 142

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 26/163 (15%), Positives = 57/163 (34%), Gaps = 19/163 (11%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSNS-----K 69
              ++I+G   +GKTTLL++        +         TVG+++    I++ +       
Sbjct: 2   RMKLMIVGNTGSGKTTLLQQ----LMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLV 57

Query: 70  LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP-SRFEDSKTALEKVLRNEDLQGAPL 128
           L  WD  G+    S    +  +    + V D +   +  +  K  L  +        +P+
Sbjct: 58  LNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS--SSPV 115

Query: 129 LILANKQDLPD-----AVSADELARYLDLKKLDERVCMFEAVS 166
           +++    D+ D     A  +      L+ +            +
Sbjct: 116 ILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNA 158

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 50.6 bits (122), Expect = 2e-08
 Identities = 31/147 (21%), Positives = 51/147 (34%), Gaps = 28/147 (19%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF---- 72
              V+++G    GK+ L  +       +     +   PT          S  K V     
Sbjct: 18  LHKVIMVGSGGVGKSALTLQF------MYDEFVEDYEPT-------KADSYRKKVVLDGE 64

Query: 73  ------WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA 126
                  D  GQ    +I + Y+      + V        F  +    E++LR ++ +  
Sbjct: 65  EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV 124

Query: 127 PLLILANKQDLPD--AVSADE---LAR 148
           P L++ NK DL D   VS +E    A 
Sbjct: 125 PFLLVGNKSDLEDKRQVSVEEAKNRAE 151

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362

 Score = 51.6 bits (123), Expect = 2e-08
 Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 10/95 (10%)

Query: 53  VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA---------- 102
            PT G++    E+ N      D+GGQ   R  W + ++   +++F++ ++          
Sbjct: 186 RPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDR 245

Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
             +R  +S    E ++ N       +++  NK DL
Sbjct: 246 QTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 50.2 bits (121), Expect = 2e-08
 Identities = 31/148 (20%), Positives = 51/148 (34%), Gaps = 28/148 (18%)

Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF--- 72
               V+++G    GK+ L  +       +     +   PT          S  K V    
Sbjct: 3   ALHKVIMVGSGGVGKSALTLQF------MYDEFVEDYEPT-------KADSYRKKVVLDG 49

Query: 73  -------WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG 125
                   D  GQ    +I + Y+      + V        F  +    E++LR ++ + 
Sbjct: 50  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 109

Query: 126 APLLILANKQDLPD--AVSADE---LAR 148
            P L++ NK DL D   VS +E    A 
Sbjct: 110 VPFLLVGNKSDLEDKRQVSVEEAKNRAD 137

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 17/149 (11%)

Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG------LNIGRIEVSNSK 69
           T + V+++G    GK+TL     ++++ V                   L +     +   
Sbjct: 36  TYYRVVLIGEQGVGKSTLA----NIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL 91

Query: 70  LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
           L  W+  G+     + +   +   A + V      + FE +     ++ R    +  P++
Sbjct: 92  LDMWENKGEN--EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 149

Query: 130 ILANKQDLPD--AVSADE---LARYLDLK 153
           ++ NK DL     VS  E    A   D K
Sbjct: 150 LVGNKSDLVRCREVSVSEGRACAVVFDCK 178

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 50.3 bits (121), Expect = 3e-08
 Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 28/152 (18%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS---------- 66
              V+++G    GK+ L  +       +     +   PT          S          
Sbjct: 14  LHKVIMVGSGGVGKSALTLQF------MYDEFVEDYEPT-------KADSYRKKVVLDGE 60

Query: 67  NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA 126
             ++   D  GQ    +I + Y+      + V        F  +    E++LR ++ +  
Sbjct: 61  EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV 120

Query: 127 PLLILANKQDLPD--AVSADE---LARYLDLK 153
           P L++ NK DL D   VS +E    A   ++ 
Sbjct: 121 PFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN 152

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 50.6 bits (121), Expect = 3e-08
 Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 23/156 (14%)

Query: 15  KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
                V+I G    GK+TLL+ L +    +   P      T G+N+G+ E    +    D
Sbjct: 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYP----FTTRGINVGQFEDGYFRYQIID 220

Query: 75  LGGQPGL-------RSIWEKYYEEAH-----AVVFVIDAA--CPSRFEDSKTALEKVLRN 120
               PGL       R+  EK    A       ++++ D +  C    E+     E+V  +
Sbjct: 221 T---PGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEV--H 275

Query: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLD 156
            + +  P L++ NK D+ D  +   L +++  K L+
Sbjct: 276 GEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLN 311

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score = 49.9 bits (120), Expect = 4e-08
 Identities = 35/147 (23%), Positives = 53/147 (36%), Gaps = 28/147 (19%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF---- 72
              V+ILG    GKT+L  +       VEG   +   PT       +E + SK+V     
Sbjct: 24  YRKVVILGYRCVGKTSLAHQF------VEGEFSEGYDPT-------VENTYSKIVTLGKD 70

Query: 73  ------WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA 126
                  D  GQ     +   +    H  V V        F+  ++  +K+         
Sbjct: 71  EFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRV 130

Query: 127 PLLILANKQDLPD--AVSADE---LAR 148
           P++++ NK DL     V A E   LA 
Sbjct: 131 PVVLVGNKADLSPEREVQAVEGKKLAE 157

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327

 Score = 50.4 bits (120), Expect = 5e-08
 Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 10/95 (10%)

Query: 53  VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA---------- 102
           VPT G+     ++ +      D+GGQ   R  W   +E   +++F++  +          
Sbjct: 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 211

Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
             +R E+SK     ++     Q + +++  NK+DL
Sbjct: 212 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 48.8 bits (117), Expect = 8e-08
 Identities = 30/146 (20%), Positives = 48/146 (32%), Gaps = 16/146 (10%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSNS--KLVFW 73
           F V+++G    GK+TL                    P    +     I V      LV +
Sbjct: 24  FKVMLVGESGVGKSTLAGTF------GGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVY 77

Query: 74  DLGGQPGLRS-IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
           D+  Q      + +   +   A + V        F      L ++         P++++ 
Sbjct: 78  DIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 137

Query: 133 NKQDLPD--AVSADE---LARYLDLK 153
           NK DL     VS +E   LA  L  K
Sbjct: 138 NKSDLARSREVSLEEGRHLAGTLSCK 163

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353

 Score = 49.7 bits (118), Expect = 8e-08
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)

Query: 53  VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA---------- 102
           V T G+        +     +D+GGQ   R  W   +E   A++F +  +          
Sbjct: 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237

Query: 103 CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
             +R  +S    + +  N+      +++  NK+DL
Sbjct: 238 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 48.8 bits (117), Expect = 9e-08
 Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 14/144 (9%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
             +LI+G    GK++LL +        +      +  T+G+   +  I V  +  KL  W
Sbjct: 16  LKILIIGESGVGKSSLLLRF------TDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 69

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R++   YY  A  V+ V D      F      L ++           +++ N
Sbjct: 70  DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGN 129

Query: 134 KQDLPD-AVSADE---LARYLDLK 153
           K D  +  V  +E    AR   + 
Sbjct: 130 KIDKENREVDRNEGLKFARKHSML 153

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 16/143 (11%)

Query: 15  KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSNS--KL 70
             ++ V++ G    GK++L+ +       V+G   D  +PT+  +  R  I    S   L
Sbjct: 6   SNDYRVVVFGAGGVGKSSLVLRF------VKGTFRDTYIPTIE-DTYRQVISCDKSVCTL 58

Query: 71  VFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR-NEDLQGAPLL 129
              D  G     ++      + HA + V         E+     + +++    ++  P++
Sbjct: 59  QITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVM 118

Query: 130 ILANKQDLPD-AVSADE---LAR 148
           ++ NK D     V   E   +A+
Sbjct: 119 LVGNKCDETQREVDTREAQAVAQ 141

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 48.3 bits (116), Expect = 1e-07
 Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 69  KLVFWDLGGQPGLRSIW--EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA 126
            LV  D      L   W  E   +   A V V   A    FE +     ++ R       
Sbjct: 53  TLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHV 112

Query: 127 PLLILANKQDLPD--AVSADE---LARYLDLK 153
           P++++ NK DL     VS +E    A   D K
Sbjct: 113 PIILVGNKADLARCREVSVEEGRACAVVFDCK 144

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 28/146 (19%), Positives = 47/146 (32%), Gaps = 16/146 (10%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSNS--KLVFW 73
           F V+++G    GK+TL                         +     I V      L+ +
Sbjct: 3   FKVMLVGESGVGKSTLAGTF------GGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVY 56

Query: 74  DLGGQPGLRS-IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
           D+  Q      + +   +   A + V        F      L ++         P++++ 
Sbjct: 57  DIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVG 116

Query: 133 NKQDLPD--AVSADE---LARYLDLK 153
           NK DL     VS +E   LA  L  K
Sbjct: 117 NKSDLARSREVSLEEGRHLAGTLSCK 142

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 35/146 (23%), Positives = 50/146 (34%), Gaps = 15/146 (10%)

Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IEVSNS--KLVF 72
           + + VL+LG    GK+ L      V                G    R I V      L+ 
Sbjct: 1   SVYKVLLLGAPGVGKSALARIFGGVED-------GPEAEAAGHTYDRSIVVDGEEASLMV 53

Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
           +D+  Q G R +         A V V        FE +     ++ R       P++++ 
Sbjct: 54  YDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVG 113

Query: 133 NKQDLPD--AVSADE---LARYLDLK 153
           NK DL     VS DE    A   D K
Sbjct: 114 NKSDLVRSREVSVDEGRACAVVFDCK 139

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 27/145 (18%), Positives = 47/145 (32%), Gaps = 17/145 (11%)

Query: 7   GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS 66
           G     F   E  V I+G   +GK+ L+ +       + G       P  G     I V 
Sbjct: 10  GRENLYFQGPELKVGIVGNLSSGKSALVHRY------LTGTYVQEESPEGGRFKKEIVVD 63

Query: 67  NS--KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQ 124
                L+  D GG P L+     +     AVVFV        F+       ++    +  
Sbjct: 64  GQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNAS 118

Query: 125 GAPLLILANKQDLPD----AVSADE 145
             P++++  +  +       +    
Sbjct: 119 EVPMVLVGTQDAISAANPRVIDDSR 143

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 28/137 (20%), Positives = 54/137 (39%), Gaps = 22/137 (16%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG---------LNIGRIEVSNS 68
           F ++++G    GKTT +++       + G    + V T+G          N G I     
Sbjct: 16  FKLVLVGDGGTGKTTFVKRH------LTGEFEKKYVATLGVEVHPLVFHTNRGPI----- 64

Query: 69  KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 128
           K   WD  GQ     + + YY +A   + + D      +++       ++R  +    P+
Sbjct: 65  KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPI 122

Query: 129 LILANKQDLPDAVSADE 145
           ++  NK D+ D     +
Sbjct: 123 VLCGNKVDIKDRKVKAK 139

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 15/144 (10%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
             +L++G    GK+ LL +        E       + T+G+   I  ++++    KL  W
Sbjct: 4   MKILLIGDSGVGKSCLLVRFV------EDKFNPSFITTIGIDFKIKTVDINGKKVKLQIW 57

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY  A  ++ V D      F + K   + V  + +   A LL++ N
Sbjct: 58  DTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN-DEAQLLLVGN 116

Query: 134 KQDLPD-AVSADE---LARYLDLK 153
           K D+    V+AD+   LA+ L + 
Sbjct: 117 KSDMETRVVTADQGEALAKELGIP 140

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 11/141 (7%)

Query: 13  FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSNS--K 69
           F       +++G    GKT LL      Y+      P   +PTV  N    + V      
Sbjct: 26  FQGQAIKCVVVGDGAVGKTCLL----ISYTT--NAFPGEYIPTVFDNYSANVMVDGKPVN 79

Query: 70  LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
           L  WD  GQ     +    Y +    +       P+ FE+ +      +R       P++
Sbjct: 80  LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 138

Query: 130 ILANKQDLP-DAVSADELARY 149
           ++  K DL  D  + ++L   
Sbjct: 139 LVGTKLDLRDDKDTIEKLKEK 159

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 47.2 bits (113), Expect = 2e-07
 Identities = 33/145 (22%), Positives = 55/145 (37%), Gaps = 16/145 (11%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
           F +LI+G    GKT+ L +        +       V TVG+   +  +       KL  W
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYA------DDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIW 77

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY  A   + + D      F   +    ++        A ++++ N
Sbjct: 78  DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW-DNAQVILVGN 136

Query: 134 KQDLPD--AVSADE---LARYLDLK 153
           K D+ +   V  ++   LA  L   
Sbjct: 137 KCDMEEERVVPTEKGQLLAEQLGFD 161

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 47.1 bits (113), Expect = 2e-07
 Identities = 28/148 (18%), Positives = 57/148 (38%), Gaps = 29/148 (19%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF---- 72
           ++ V + G    GK++L+ +       V+G   +  +PT       +E +  +++     
Sbjct: 3   DYRVAVFGAGGVGKSSLVLRF------VKGTFRESYIPT-------VEDTYRQVISCDKS 49

Query: 73  ------WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN-EDLQG 125
                  D  G     ++      + HA + V         E+ K   E++     D++ 
Sbjct: 50  ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVES 109

Query: 126 APLLILANKQDLPD--AVSADE---LAR 148
            P++++ NK D      V + E   LAR
Sbjct: 110 IPIMLVGNKCDESPSREVQSSEAEALAR 137

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 47.2 bits (113), Expect = 2e-07
 Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 15/145 (10%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
           F V+++G    GKT LL + K              + TVG+      ++V     KL  W
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKD-----GAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 65

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   RS+   YY +AHA++ + D    + F++ +  L ++          L++L N
Sbjct: 66  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGN 124

Query: 134 KQDLPD--AVSADE---LARYLDLK 153
           K D      V  ++   LA+   L 
Sbjct: 125 KVDSAHERVVKREDGEKLAKEYGLP 149

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 16/145 (11%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
           F ++++G    GKT L+ +        +GL P     T+G+   I  +E++    KL  W
Sbjct: 27  FKIVLIGNAGVGKTCLVRRF------TQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 80

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   RSI + YY  A+A++   D  C   F      L ++ +         +++ N
Sbjct: 81  DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS-NKVITVLVGN 139

Query: 134 KQDLPD--AVSADE---LARYLDLK 153
           K DL +   VS       +   D+ 
Sbjct: 140 KIDLAERREVSQQRAEEFSEAQDMY 164

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 22/151 (14%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
           + +++ G    GK++ L +L       +    + I  T+G+   +  + V      L  W
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLC------KNEFRENISATLGVDFQMKTLIVDGERTVLQLW 82

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   RSI + Y+ +A  V+ + D  C   F + +  ++ +      +  P++++ N
Sbjct: 83  DTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAH-ETVPIMLVGN 141

Query: 134 KQDLPD--------AVSADE---LARYLDLK 153
           K D+ D         V       LA      
Sbjct: 142 KADIRDTAATEGQKCVPGHFGEKLAMTYGAL 172

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 16/145 (11%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
           F +L++G    GK+ LL +        +    +  + T+G++  I  IE+     KL  W
Sbjct: 34  FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 87

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY  AH ++ V D      F + K  L+++ R    +    L++ N
Sbjct: 88  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGN 146

Query: 134 KQDLPD--AVSADE---LARYLDLK 153
           K DL     V        A  L + 
Sbjct: 147 KCDLTTKKVVDYTTAKEFADSLGIP 171

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 15/144 (10%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
             +L++G    GK+ LL +        E       + T+G+   I  ++++    KL  W
Sbjct: 21  MKILLIGDSGVGKSCLLVRFV------EDKFNPSFITTIGIDFKIKTVDINGKKVKLQLW 74

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY  A  ++ V D      F + K   + V  + +   A LL++ N
Sbjct: 75  DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN-DEAQLLLVGN 133

Query: 134 KQDLPD-AVSADE---LARYLDLK 153
           K D+    V+AD+   LA+ L + 
Sbjct: 134 KSDMETRVVTADQGEALAKELGIP 157

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 28/154 (18%), Positives = 45/154 (29%), Gaps = 31/154 (20%)

Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
            E  + I G    GK+ L+ +       +         PT       +E +       D 
Sbjct: 27  AEVKLAIFGRAGVGKSALVVRF------LTKRFIWEYDPT-------LESTYRHQATID- 72

Query: 76  GGQPGLRSIW-----------EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQ 124
             +     I            E +       V V D      FE+       +   +  +
Sbjct: 73  -DEVVSMEILDTAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPK 131

Query: 125 GAPLLILANKQDLPD--AVSADE---LARYLDLK 153
              L+++ NK DL     VS +E   LA  L   
Sbjct: 132 NVTLILVGNKADLDHSRQVSTEEGEKLATELACA 165

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 46.4 bits (111), Expect = 5e-07
 Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 16/145 (11%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
           F +L++G    GKT+ L +        +       V TVG+   +  +   +   KL  W
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYA------DDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIW 76

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY  A   + + D A    F   +    ++        A ++++ N
Sbjct: 77  DTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW-DNAQVILVGN 135

Query: 134 KQDLPD--AVSADE---LARYLDLK 153
           K DL D   V A++   LA  L  +
Sbjct: 136 KCDLEDERVVPAEDGRRLADDLGFE 160

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 46.5 bits (111), Expect = 6e-07
 Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 16/145 (11%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
           F +L++G    GK+ LL +        +    +  + T+G+   I  IE+     KL  W
Sbjct: 17  FKLLLIGDSGVGKSCLLLRF------ADDTYTESYISTIGVDFKIRTIELDGKTIKLQIW 70

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY  AH ++ V D      F + K  L+++ R    +    L++ N
Sbjct: 71  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGN 129

Query: 134 KQDLPD--AVSADE---LARYLDLK 153
           K DL     V        A  L + 
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGIP 154

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 46.0 bits (110), Expect = 6e-07
 Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 16/145 (11%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
           F +L++G    GKT +L +        E       + T+G+   I  IE+     KL  W
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFS------EDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY  A  ++ V D      F++ +  +  +  +        +IL N
Sbjct: 63  DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEKMILGN 121

Query: 134 KQDLPD--AVSADE---LARYLDLK 153
           K D+ D   VS +    LA    +K
Sbjct: 122 KCDVNDKRQVSKERGEKLALDYGIK 146

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 46.1 bits (110), Expect = 7e-07
 Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 16/145 (11%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
           F +LI+G    GKT+ L +        +       V TVG+   +  I  ++   KL  W
Sbjct: 9   FKILIIGNSSVGKTSFLFRYA------DDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIW 62

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  G    R+I   YY  A   + + D      F   +    ++        A +L++ N
Sbjct: 63  DTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW-DNAQVLLVGN 121

Query: 134 KQDLPD--AVSADE---LARYLDLK 153
           K D+ D   VS++    LA +L  +
Sbjct: 122 KCDMEDERVVSSERGRQLADHLGFE 146

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 46.0 bits (110), Expect = 7e-07
 Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 17/139 (12%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSKLV---F 72
             V+ILG    GKT+L+ +       V      +   T+G +     + V   K+     
Sbjct: 9   LKVIILGDSGVGKTSLMHRY------VNDKYSQQYKATIGADFLTKEVTVDGDKVATMQV 62

Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN---EDLQGAPLL 129
           WD  GQ   +S+   +Y  A   V V D    S FE+ K+  ++ L +      +  P +
Sbjct: 63  WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFV 122

Query: 130 ILANKQDLPD---AVSADE 145
           IL NK D  +    VS   
Sbjct: 123 ILGNKIDAEESKKIVSEKS 141

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 46.1 bits (110), Expect = 8e-07
 Identities = 33/144 (22%), Positives = 51/144 (35%), Gaps = 16/144 (11%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
           F  L++G    GK+ LL +       +E         T+G+      + V     KL  W
Sbjct: 26  FKFLVIGSAGTGKSCLLHQF------IENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIW 79

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   RS+   YY  A   + V D      +      L             +++  N
Sbjct: 80  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGN 138

Query: 134 KQDLPD--AVSADE---LARYLDL 152
           K+DL     V+  E    A+  +L
Sbjct: 139 KKDLDPEREVTFLEASRFAQENEL 162

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 46.2 bits (110), Expect = 8e-07
 Identities = 32/155 (20%), Positives = 59/155 (38%), Gaps = 25/155 (16%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS------- 68
             +L LG    GKTT L +        +     + + TVG+     R+  +         
Sbjct: 26  IKLLALGDSGVGKTTFLYRY------TDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSG 79

Query: 69  -----KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL 123
                 L  WD  GQ   RS+   ++ +A   + + D      F + +  + ++  N   
Sbjct: 80  KAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYC 139

Query: 124 QGAPLLILANKQDLPD--AVSADE---LARYLDLK 153
           +   ++++ NK DLPD   V+  +   LA    + 
Sbjct: 140 ENPDIVLIGNKADLPDQREVNERQARELADKYGIP 174

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 45.8 bits (109), Expect = 9e-07
 Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 16/145 (11%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
           F +L++G    GK+ LL +        +    +  + T+G+   I  +E+     KL  W
Sbjct: 9   FKLLLIGNSGVGKSCLLLRF------SDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 62

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY  +H ++ V D      F   K  L+++ R         L++ N
Sbjct: 63  DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT-STVLKLLVGN 121

Query: 134 KQDLPD--AVSADE---LARYLDLK 153
           K DL D   V  D     A    + 
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMP 146

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 45.8 bits (109), Expect = 9e-07
 Identities = 31/145 (21%), Positives = 61/145 (42%), Gaps = 16/145 (11%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
           F ++ LG    GKT+L+ +       +     +    T+G++     + + +   +L  W
Sbjct: 17  FKLVFLGEQSVGKTSLITRF------MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 70

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  G    RS+   Y  ++   V V D    + F+ +   ++ V          ++++ N
Sbjct: 71  DTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGN 129

Query: 134 KQDLPD--AVSADE---LARYLDLK 153
           K DL D   VS +E    A+ L++ 
Sbjct: 130 KTDLADKRQVSIEEGERKAKELNVM 154

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 13/134 (9%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
             V+I+G    GKT+L+E+        +    +    TVG+   I  +E+     +L  W
Sbjct: 27  LQVIIIGSRGVGKTSLMERFT------DDTFCEACKSTVGVDFKIKTVELRGKKIRLQIW 80

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ    SI   YY  A  ++ V D      F+D    ++ + +    + A LL++ N
Sbjct: 81  DTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS-EDAELLLVGN 139

Query: 134 KQDLPD--AVSADE 145
           K D      ++  +
Sbjct: 140 KLDCETDREITRQQ 153

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 15/149 (10%)

Query: 13  FTKTEF---HVLILGIDKAGKT--------TLLEKLKSVYSNVEGLPPDRIVPTVGLNIG 61
            TK  F       +G                     +   +       + ++ T   N  
Sbjct: 27  LTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNY 86

Query: 62  RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE 121
              + N K   WD  GQ    SI   YY  A   + V D +  +  + +KT + ++  + 
Sbjct: 87  NENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS 146

Query: 122 DLQGAPLLILANKQDLPD-AVSADELARY 149
           +     ++++ANK D     V   E+ +Y
Sbjct: 147 NYI---IILVANKIDKNKFQVDILEVQKY 172

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 16/146 (10%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
           F ++++G    GKT L  +         G  PDR   T+G+      +++     K+  W
Sbjct: 21  FKIIVIGDSNVGKTCLTYRF------CAGRFPDRTEATIGVDFRERAVDIDGERIKIQLW 74

Query: 74  DLGGQPGLR-SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
           D  GQ   R S+ + YY   HAVVFV D    + F      +E+  ++      P +++ 
Sbjct: 75  DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVG 134

Query: 133 NKQDLPD--AVSADE---LARYLDLK 153
           NK DL     V  D     A    + 
Sbjct: 135 NKCDLRSAIQVPTDLAQKFADTHSMP 160

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 14/138 (10%)

Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG------LNIGRIEVSNSK 69
           T + V+++G    GK+TL     ++++ V                   L +     +   
Sbjct: 5   TYYRVVLIGEQGVGKSTLA----NIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL 60

Query: 70  LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL 129
           L  W+  G+     + +   +   A + V      + FE +     ++ R    +  P++
Sbjct: 61  LDMWENKGEN--EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118

Query: 130 ILANKQDLPD--AVSADE 145
           ++ NK DL     VS  E
Sbjct: 119 LVGNKSDLVRXREVSVSE 136

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 16/144 (11%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
           F V+++G    GK+ LL +                  T+G+      I+V     K   W
Sbjct: 6   FKVVLIGDSGVGKSNLLSRF------TRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 59

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R I   YY  A   + V D A    +E+ +  L+++  + D     ++++ N
Sbjct: 60  DTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGN 118

Query: 134 KQDLPD--AVSADE---LARYLDL 152
           K DL    AV  DE    A   +L
Sbjct: 119 KSDLRHLRAVPTDEARAFAEKNNL 142

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 45.8 bits (108), Expect = 1e-06
 Identities = 27/149 (18%), Positives = 55/149 (36%), Gaps = 10/149 (6%)

Query: 15  KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFW 73
            +  +V + G   +GK++ +  L+ + +  EG     +V    +     +  N   +VFW
Sbjct: 67  SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFW 125

Query: 74  DLGGQPGLRSIWEKYYEE---AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLI 130
           DL G        + Y E+        F+I +A   +  D       + +   +       
Sbjct: 126 DLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKND-----IDIAKAISMMKKEFYF 180

Query: 131 LANKQDLPDAVSADELARYLDLKKLDERV 159
           +  K D      AD   +  D +K+ + +
Sbjct: 181 VRTKVDSDITNEADGEPQTFDKEKVLQDI 209

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 30/145 (20%), Positives = 54/145 (37%), Gaps = 16/145 (11%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
           F V+++G    GKT LL +                  T+G+  +   + +  +  K   W
Sbjct: 26  FKVVLIGESGVGKTNLLSRF------TRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 79

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  G    R+I   YY  A   + V D      +   +  L+++  + +     ++++ N
Sbjct: 80  DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE-ATIVVMLVGN 138

Query: 134 KQDLPD--AVSADE---LARYLDLK 153
           K DL     V  +E    A    L 
Sbjct: 139 KSDLSQAREVPTEEARMFAENNGLL 163

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 35/145 (24%), Positives = 58/145 (40%), Gaps = 16/145 (11%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
           F ++++G    GK+ LL +        +         T+G+      +E+     K   W
Sbjct: 14  FKIVLIGDSGVGKSNLLSRF------TKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIW 67

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY  A   + V D +  S +E+    L ++  N D     + ++ N
Sbjct: 68  DTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD-DNVAVGLIGN 126

Query: 134 KQDLPD--AVSADE---LARYLDLK 153
           K DL    AV  +E    A+   L 
Sbjct: 127 KSDLAHLRAVPTEESKTFAQENQLL 151

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 16/145 (11%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
           F ++++G    GKT ++++ K       G   +R   T+G+   +  +E+     KL  W
Sbjct: 30  FKLVLVGDASVGKTCVVQRFK------TGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIW 83

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I + YY  A+  +   D    S F      +E V +         L++ N
Sbjct: 84  DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG-SNIVQLLIGN 142

Query: 134 KQDLPD--AVSADE---LARYLDLK 153
           K DL +   VS  E   LA + D+ 
Sbjct: 143 KSDLSELREVSLAEAQSLAEHYDIL 167

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 15/136 (11%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSNS--KLVFWDLG 76
           V+++G    GKT+LL     V+++  G  P+   PTV    +  ++V      L  WD  
Sbjct: 37  VVLVGDGGCGKTSLL----MVFAD--GAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTA 90

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR--NEDLQGAPLLILANK 134
           GQ     +   +Y +A  ++   D   P+ F+       +     N   +  P++++  K
Sbjct: 91  GQDDYDRLRPLFYPDASVLLLCFDVTSPNSFD---NIFNRWYPEVNHFCKKVPIIVVGCK 147

Query: 135 QDL-PDAVSADELARY 149
            DL  D    ++L R 
Sbjct: 148 TDLRKDKSLVNKLRRN 163

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 36/144 (25%), Positives = 54/144 (37%), Gaps = 16/144 (11%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
           F  +I+G    GK+ LL +        E         T+G+      IEVS    KL  W
Sbjct: 16  FKYIIIGDMGVGKSCLLHQF------TEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIW 69

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R++   YY  A   + V D    S +    + L       +     ++++ N
Sbjct: 70  DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN-PNTVIILIGN 128

Query: 134 KQDLPD--AVSADE---LARYLDL 152
           K DL     V+ +E    A    L
Sbjct: 129 KADLEAQRDVTYEEAKQFAEENGL 152

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 31/155 (20%), Positives = 58/155 (37%), Gaps = 25/155 (16%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS------- 68
              L LG    GKT++L +        +G    + + TVG+     R+    +       
Sbjct: 12  IKFLALGDSGVGKTSVLYQY------TDGKFNSKFITTVGIDFREKRVVYRANGPDGAVG 65

Query: 69  -----KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL 123
                 L  WD  G    RS+   ++ +A   + + D      F + +  + ++  +   
Sbjct: 66  RGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS 125

Query: 124 QGAPLLILANKQDLPD--AVSADE---LARYLDLK 153
           +   +++  NK DL D  AV  +E   LA    + 
Sbjct: 126 ENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIP 160

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 36/144 (25%), Positives = 53/144 (36%), Gaps = 16/144 (11%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
           F  L++G    GK+ LL +       +E    D    T+G+      I V     KL  W
Sbjct: 11  FKFLVIGNAGTGKSCLLHQF------IEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   RS+   YY  A   + V D      +      L         Q   +++  N
Sbjct: 65  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGN 123

Query: 134 KQDLPD--AVSADE---LARYLDL 152
           K+DL     V+  E    A+  +L
Sbjct: 124 KKDLDADREVTFLEASRFAQENEL 147

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 44.1 bits (105), Expect = 3e-06
 Identities = 31/148 (20%), Positives = 56/148 (37%), Gaps = 18/148 (12%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS---KLVF 72
             +++LG   +GKT+L           +     +   T+GL   + RI +  +    L  
Sbjct: 7   LKIVVLGDGASGKTSLTTCF------AQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQI 60

Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKV--LRNEDLQGAPLLI 130
           WD+GGQ     + +KY   A  V+ V D      FE+ +     V  +  E      + +
Sbjct: 61  WDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVAL 120

Query: 131 LANKQDLPD--AVSADE---LARYLDLK 153
           + NK DL     +  ++     +     
Sbjct: 121 VGNKIDLEHMRTIKPEKHLRFCQENGFS 148

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 3e-06
 Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 25/136 (18%)

Query: 20  VLILGIDKAGKTTL-LEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKL-VFWDLGG 77
           VLI G+  +GKT + L+   S    V+     +I     LN+       + L +   L  
Sbjct: 153 VLIDGVLGSGKTWVALDVCLS--YKVQCKMDFKI---FWLNLKNCNSPETVLEMLQKL-- 205

Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
              L  I   +   +        +    R    +  L ++L+++  +   LL+L      
Sbjct: 206 ---LYQIDPNWTSRSD-----HSSNIKLRIHSIQAELRRLLKSKPYENC-LLVL------ 250

Query: 138 PDAVSADELARYLDLK 153
              V   +     +L 
Sbjct: 251 -LNVQNAKAWNAFNLS 265

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 44.1 bits (105), Expect = 3e-06
 Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 13/138 (9%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
           F ++ LG    GKT+L+ +       +     +    T+G++     + + +   +L  W
Sbjct: 15  FKLVFLGEQSVGKTSLITRF------MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 68

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   RS+   Y  ++   V V D    + F  +   ++  +R E      ++++ N
Sbjct: 69  DTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDD-VRTERGSDVIIMLVGN 127

Query: 134 KQDLPD--AVSADELARY 149
           K DL D   VS +E  R 
Sbjct: 128 KTDLSDKRQVSTEEGERK 145

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 44.1 bits (105), Expect = 4e-06
 Identities = 35/145 (24%), Positives = 53/145 (36%), Gaps = 16/145 (11%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
           F  +I+G    GK+ LL +        +         T+G+      + +     KL  W
Sbjct: 22  FKYIIIGDTGVGKSCLLLQF------TDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIW 75

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   RSI   YY  A   + V D      F    + LE   ++       ++++ N
Sbjct: 76  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS-SNMVIMLIGN 134

Query: 134 KQDLPD--AVSADE---LARYLDLK 153
           K DL     V  +E    AR   L 
Sbjct: 135 KSDLESRRDVKREEGEAFAREHGLI 159

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 43.6 bits (104), Expect = 4e-06
 Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 17/145 (11%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
             ++++G    GK++++++        +G+       T+G+     +I+V++   +L+ W
Sbjct: 6   IKMVVVGNGAVGKSSMIQRY------CKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLW 59

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ    +I + YY  A A V V        FE   +  EKV+        P  ++ N
Sbjct: 60  DTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG--DIPTALVQN 117

Query: 134 KQDLPD--AVSADE---LARYLDLK 153
           K DL D   +  +E   LA+ L L+
Sbjct: 118 KIDLLDDSCIKNEEAEGLAKRLKLR 142

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 69  KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN---EDLQG 125
            +  WD  GQ   +S+   +Y  A   V V D   P+ F+   +  ++ L      D + 
Sbjct: 58  TMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPEN 117

Query: 126 APLLILANKQDLPD-AVSADELARYL 150
            P ++L NK DL +  V+      + 
Sbjct: 118 FPFVVLGNKIDLENRQVATKRAQAWC 143

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 44.0 bits (104), Expect = 4e-06
 Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 13/135 (9%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSNS--KLVFWDLG 76
           ++I+G    GKT LL     V+S      P+  VPTV  N I  IEV     +L  WD  
Sbjct: 28  LVIVGDGACGKTCLL----IVFSK--DQFPEVYVPTVFENYIADIEVDGKQVELALWDTA 81

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA-LEKVLRNEDLQGAPLLILANKQ 135
           GQ     +    Y +   ++       P   E+       +V         P++++ NK+
Sbjct: 82  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKK 139

Query: 136 DL-PDAVSADELARY 149
           DL  D  +  ELA+ 
Sbjct: 140 DLRQDEHTRRELAKM 154

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 43.7 bits (104), Expect = 5e-06
 Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 17/145 (11%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
           F +LI+G    GK++LL +        +       + T+G+   I  +E++    KL  W
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFA------DNTFSGSYITTIGVDFKIRTVEINGEKVKLQIW 63

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY   H V+ V D      F + K  L ++ +N D      +++ N
Sbjct: 64  DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD--DVCRILVGN 121

Query: 134 KQDLPD--AVSADE---LARYLDLK 153
           K D P+   V  ++    A  + ++
Sbjct: 122 KNDDPERKVVETEDAYKFAGQMGIQ 146

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354

 Score = 44.3 bits (104), Expect = 5e-06
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 72  FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALEKVLRNE 121
            +D+GGQ   R  W   +E   AV+F    +            +R  ++K   + VL+  
Sbjct: 187 LFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 246

Query: 122 DLQGAPLLILANKQDL 137
             +    ++  NK D+
Sbjct: 247 CFEKTSFMLFLNKFDI 262

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 43.6 bits (103), Expect = 6e-06
 Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 13/135 (9%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSNS--KLVFWDLG 76
           ++++G    GKT LL     V+S      P+  VPTV  N +  IEV     +L  WD  
Sbjct: 28  LVVVGDGACGKTCLL----IVFSK--DEFPEVYVPTVFENYVADIEVDGKQVELALWDTA 81

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA-LEKVLRNEDLQGAPLLILANKQ 135
           GQ     +    Y +   ++       P   E+     + +V         P++++ANK+
Sbjct: 82  GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEV--KHFCPNVPIILVANKK 139

Query: 136 DL-PDAVSADELARY 149
           DL  D     ELAR 
Sbjct: 140 DLRSDEHVRTELARM 154

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 43.2 bits (102), Expect = 6e-06
 Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 11/159 (6%)

Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLV 71
           T   +++LG    GK++++ +       V     +   PT+G      R+ ++    K  
Sbjct: 2   TSIKLVLLGEAAVGKSSIVLRF------VSNDFAENKEPTIGAAFLTQRVTINEHTVKFE 55

Query: 72  FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131
            WD  GQ    S+   YY  A A + V D   P  F  ++  ++++      +   + ++
Sbjct: 56  IWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALV 114

Query: 132 ANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
            NK D        ++AR    K  +E+  +F   S   G
Sbjct: 115 GNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTG 153

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 42.9 bits (102), Expect = 8e-06
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 69  KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN---EDLQG 125
            +  WD  GQ   RS+   +Y  +   +          F++     ++ +     ++ + 
Sbjct: 57  TMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPES 116

Query: 126 APLLILANKQDLPD-AVSADE 145
            P +IL NK D+ +  VS +E
Sbjct: 117 FPFVILGNKIDISERQVSTEE 137

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 43.0 bits (102), Expect = 8e-06
 Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 16/144 (11%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNS--KLVFW 73
           F V+++G    GK+ LL +                  T+G+      I+V     K   W
Sbjct: 30  FKVVLIGDSGVGKSNLLSRF------TRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 83

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  G    R+I   YY  A   + V D A    +E+ +  L+++  + D     ++++ N
Sbjct: 84  DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGN 142

Query: 134 KQDLPD--AVSADE---LARYLDL 152
           K DL    AV  DE    A    L
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGL 166

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 13/135 (9%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK---LVFWDLG 76
           ++++G  + GKT LL     V++      P+  VPTV  N       +++   L  WD  
Sbjct: 10  IVVVGDSQCGKTALL----HVFAK--DCFPENYVPTVFENYTASFEIDTQRIELSLWDTS 63

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA-LEKVLRNEDLQGAPLLILANKQ 135
           G P   ++    Y ++ AV+   D + P   +        ++          +L++  K 
Sbjct: 64  GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKS 121

Query: 136 DL-PDAVSADELARY 149
           DL  D  +  EL+ +
Sbjct: 122 DLRTDVSTLVELSNH 136

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 14/145 (9%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG---LNIGRIEVSNS--KLVF 72
           + + ++G    GKTT + ++      ++G        TVG     +  ++   +  K   
Sbjct: 12  YKICLIGDGGVGKTTYINRV------LDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNV 65

Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
           WD  GQ     + + YY  A   +   D       ++    +++         AP+++ A
Sbjct: 66  WDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG-NEAPIVVCA 124

Query: 133 NKQDLPD--AVSADELARYLDLKKL 155
           NK D+ +   +S   +   L  K  
Sbjct: 125 NKIDIKNRQKISKKLVMEVLKGKNY 149

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 16/146 (10%)

Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLV 71
            E  V +LG    GK++++ +       V+      I PT+G +     +   N   K +
Sbjct: 22  RELKVCLLGDTGVGKSSIVCRF------VQDHFDHNISPTIGASFMTKTVPCGNELHKFL 75

Query: 72  FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131
            WD  GQ    S+   YY  + A V V D      F   K  ++++  +   +   + I 
Sbjct: 76  IWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP-ENIVMAIA 134

Query: 132 ANKQDLPD--AVSADE---LARYLDL 152
            NK DL D   V   +    A  +  
Sbjct: 135 GNKCDLSDIREVPLKDAKEYAESIGA 160

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 11/134 (8%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK---LVFWDLG 76
            +++G    GKT+L+      Y+      P   +PT   N   +   + +   L   D  
Sbjct: 23  CVLVGDGAVGKTSLV----VSYTT--NGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTA 76

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
           GQ     +    Y      +       PS F++        +R      AP++++  + D
Sbjct: 77  GQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIR-CHCPKAPIILVGTQSD 135

Query: 137 L-PDAVSADELARY 149
           L  D     EL + 
Sbjct: 136 LREDVKVLIELDKC 149

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 23/152 (15%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
           +++ G    GK++ +  +     +V+         T  L +G  +   +K    D    P
Sbjct: 32  IILSGAPNVGKSSFMNIVSRANVDVQSYS----FTTKNLYVGHFDHKLNKYQIIDT---P 84

Query: 80  GL-------RSIWEKYYEEA-----HAVVFVIDAA--CPSRFEDSKTALEKVLRNEDLQG 125
           GL       R+  E     A       ++F+ID +  C    ++       +        
Sbjct: 85  GLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSI--KSVFSN 142

Query: 126 APLLILANKQDLPDAVSADELARYLDLKKLDE 157
             ++I  NK D  +  S     + L  + LD 
Sbjct: 143 KSIVIGFNKIDKCNMDSLSIDNKLLIKQILDN 174

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 13/135 (9%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK---LVFWDLG 76
           ++++G  + GKT LL     V++      P+  VPTV  N       +++   L  WD  
Sbjct: 31  IVVVGDSQCGKTALL----HVFAK--DCFPENYVPTVFENYTASFEIDTQRIELSLWDTS 84

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA-LEKVLRNEDLQGAPLLILANKQ 135
           G P   ++    Y ++ AV+   D + P   +        ++          +L++  K 
Sbjct: 85  GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKS 142

Query: 136 DL-PDAVSADELARY 149
           DL  D  +  EL+ +
Sbjct: 143 DLRTDVSTLVELSNH 157

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 13/140 (9%)

Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLV 71
            E  V +LG    GK++++ +       VE      I PT+G +     ++  N   K +
Sbjct: 5   RELKVCLLGDTGVGKSSIMWRF------VEDSFDPNINPTIGASFMTKTVQYQNELHKFL 58

Query: 72  FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131
            WD  G    R++   YY  + A + V D      F   K  + ++ ++       + I 
Sbjct: 59  IWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP-PSIVVAIA 117

Query: 132 ANKQDLPD--AVSADELARY 149
            NK DL D   V   +   Y
Sbjct: 118 GNKCDLTDVREVMERDAKDY 137

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 16/145 (11%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLVFW 73
           F V++LG    GKT+L+ +        E    D+ + T+G +    ++ +      L  W
Sbjct: 7   FKVVLLGEGCVGKTSLVLRY------CENKFNDKHITTLGASFLTKKLNIGGKRVNLAIW 60

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ    ++   YY +++  + V D      F+  K  ++++ +        L I+ N
Sbjct: 61  DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG-NEICLCIVGN 119

Query: 134 KQDLPD--AVSADE---LARYLDLK 153
           K DL     VS  E    A  +  K
Sbjct: 120 KIDLEKERHVSIQEAESYAESVGAK 144

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 13/140 (9%)

Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNS--KLV 71
            +F +++LG    GK++L+ +       V+G   +    T+G       + + ++  K  
Sbjct: 5   CQFKLVLLGESAVGKSSLVLRF------VKGQFHEFQESTIGAAFLTQTVCLDDTTVKFE 58

Query: 72  FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL 131
            WD  GQ    S+   YY  A A + V D      F  +K  ++++ R        + + 
Sbjct: 59  IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALS 117

Query: 132 ANKQDLPD--AVSADELARY 149
            NK DL +  AV   E   Y
Sbjct: 118 GNKADLANKRAVDFQEAQSY 137

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 13/135 (9%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSNS--KLVFWDLG 76
           ++++G  + GKT +L     V +      P+  VPTV  N    +E      +L  WD  
Sbjct: 30  LVLVGDVQCGKTAML----QVLAK--DCYPETYVPTVFENYTACLETEEQRVELSLWDTS 83

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA-LEKVLRNEDLQGAPLLILANKQ 135
           G P   ++    Y ++ AV+   D + P   + +      ++L         +L++  K 
Sbjct: 84  GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKT 141

Query: 136 DL-PDAVSADELARY 149
           DL  D  +  EL+  
Sbjct: 142 DLRTDLSTLMELSHQ 156

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 29/134 (21%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 22  ILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK---LVFWDLGGQ 78
           ++G    GKT LL      Y+N     P+  VPTV  +         K   L  +D  GQ
Sbjct: 23  VVGDGAVGKTCLL----MSYAN--DAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ 76

Query: 79  PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR--NEDLQGAPLLILANKQD 136
                +    Y      +       P+ F++     E+ +    E     P L++  + D
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQN---VKEEWVPELKEYAPNVPFLLIGTQID 133

Query: 137 L-PDAVSADELARY 149
           L  D  +   L   
Sbjct: 134 LRDDPKTLARLNDM 147

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 7/62 (11%)

Query: 90  EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARY 149
           E+A  V+FV+DA+ P   ED K         E ++    L++ NK D+ + ++ +E+   
Sbjct: 322 EKADIVLFVLDASSPLDEEDRKIL-------ERIKNKRYLVVINKVDVVEKINEEEIKNK 374

Query: 150 LD 151
           L 
Sbjct: 375 LG 376

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 26/139 (18%), Positives = 54/139 (38%), Gaps = 15/139 (10%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG--LNIGRIEVSNS--KLVFW 73
             V ++G    GK+ L+    S++++           T G  + +  + + ++   +  +
Sbjct: 21  CKVAVVGEATVGKSALI----SMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELF 76

Query: 74  --DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKV--LRNEDLQGAPLL 129
             D  G    +    +Y+   +  + V D +    FE  K   E +   R +  +    +
Sbjct: 77  LLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAV 136

Query: 130 ILANKQDLPD---AVSADE 145
           ++ANK DLP     V  D 
Sbjct: 137 LVANKTDLPPQRHQVRLDM 155

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462

 Score = 41.3 bits (98), Expect = 5e-05
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 90  EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARY 149
             A  V+  IDAA      D +         E ++  PL+++ NK DL +      L   
Sbjct: 302 NTADLVLLTIDAATGWTTGDQEIY-------EQVKHRPLILVMNKIDLVEKQLITSLEYP 354

Query: 150 LDLKKL 155
            ++ ++
Sbjct: 355 ENITQI 360

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 11/134 (8%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSNS--KLVFWDLG 76
            +++G    GKT LL      Y+      P   +PTV  N    + V      L  WD  
Sbjct: 8   CVVVGDGAVGKTCLL----ISYTT--NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
           GQ     +    Y +    +       P+ FE+ +      +R       P++++  K D
Sbjct: 62  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLD 120

Query: 137 L-PDAVSADELARY 149
           L  D  + ++L   
Sbjct: 121 LRDDKDTIEKLKEK 134

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 12/129 (9%)

Query: 15  KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSNS--KLV 71
           K    ++++G    GKT LL      +S   G  P   VPTV  N    ++  N    L 
Sbjct: 21  KKALKIVVVGDGAVGKTCLL----LAFSK--GEIPTAYVPTVFENFSHVMKYKNEEFILH 74

Query: 72  FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA-LEKVLRNEDLQGAPLLI 130
            WD  GQ     +    Y ++  V+        + F++  T    ++     +  A  ++
Sbjct: 75  LWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI--KHYIDTAKTVL 132

Query: 131 LANKQDLPD 139
           +  K DL  
Sbjct: 133 VGLKVDLRK 141

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 12/124 (9%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK---LVFWDLG 76
            + +G    GKT LL      Y++     P   VPTV  N     V N     L  WD  
Sbjct: 11  CVTVGDGAVGKTCLL----ISYTS--NTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTA 64

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA-LEKVLRNEDLQGAPLLILANKQ 135
           GQ     +    Y  A   +        + +E+     + ++       G P++++  K 
Sbjct: 65  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY--APGVPIVLVGTKL 122

Query: 136 DLPD 139
           DL D
Sbjct: 123 DLRD 126

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 28/123 (22%), Positives = 43/123 (34%), Gaps = 10/123 (8%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSNS--KLVFWDLG 76
            + +G    GKT +L      Y++     P   +PTV  N    + V      L  WD  
Sbjct: 12  CVTVGDGAVGKTCML----ICYTS--NKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTA 65

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
           GQ     +    Y  A   V        + +E+        LR       P++++  K D
Sbjct: 66  GQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR-RFAPNVPIVLVGTKLD 124

Query: 137 LPD 139
           L D
Sbjct: 125 LRD 127

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 35/150 (23%), Positives = 52/150 (34%), Gaps = 31/150 (20%)

Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF--- 72
            E ++ ILG   AGK+ L  K       +         P        +E + S       
Sbjct: 20  LEVNLAILGRRGAGKSALTVKF------LTKRFISEYDPN-------LEDTYSSEETVDH 66

Query: 73  -------WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN--EDL 123
                   D       R+  E+Y   AHA + V        F+ S + LE +  +  E  
Sbjct: 67  QPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQ 125

Query: 124 QGAPLLILANKQDLPD--AVSADE---LAR 148
           +  P L+L NK D+     V+  E   LA 
Sbjct: 126 RSIPALLLGNKLDMAQYRQVTKAEGVALAG 155

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 90  EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA 140
           E+A  V+F++D       + ++  +            P+ ++ NK D+   
Sbjct: 82  EQADRVLFMVDGTTTDAVDPAE--IWPEFIARLPAKLPITVVRNKADITGE 130

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 3/83 (3%)

Query: 69  KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL 128
           K   WD  GQ    S+   YY  A A + V D    + FE +K  ++++    +     +
Sbjct: 62  KFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN-PNMVM 120

Query: 129 LILANKQDLPD--AVSADELARY 149
            +  NK DL D   V+A++   Y
Sbjct: 121 ALAGNKSDLLDARKVTAEDAQTY 143

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 31/146 (21%)

Query: 14  TKTEFHVLILGIDKAGKTTLLEK-LKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVF 72
           +  E  + +LG  ++GK++L+ + L   Y  +E         T             K + 
Sbjct: 4   SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLE--------KT-------ESEQYKKEM- 47

Query: 73  WDLGGQPGLRSIW-------EKYYEEAHAVVFVIDAACPSRFEDSKTALEKV--LRNEDL 123
             + GQ  L  I         K+   A AV+FV      + F+       ++  LR E  
Sbjct: 48  -LVDGQTHLVLIREEAGAPDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGR 106

Query: 124 QGAP--LLILANKQDLPD--AVSADE 145
            G    L+   ++        V    
Sbjct: 107 GGLALALVGTQDRISASSPRVVGDAR 132

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 38.3 bits (90), Expect = 6e-04
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 3/59 (5%)

Query: 90  EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELAR 148
            EA  +++++D       ++     E          A  L +ANK D      A   A 
Sbjct: 311 AEADLILYLLDLGTERLDDELTEIRELK---AAHPAAKFLTVANKLDRAANADALIRAI 366

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	170
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	100.0
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	100.0
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	100.0
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	100.0
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.98
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.97
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.96
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.96
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.96
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.96
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.96
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.96
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.96
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.96
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.96
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.96
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.96
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.96
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.95
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.95
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.95
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.95
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.95
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.95
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.95
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.95
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.95
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.95
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.95
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.95
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.95
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.95
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.95
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.95
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.95
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.95
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.95
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.95
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.95
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.95
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.95
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.95
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.95
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.95
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.95
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.95
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.95
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.95
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.95
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.95
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.95
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.95
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.95
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.95
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.95
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.95
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.95
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.95
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.95
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.95
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.95
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.95
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.94
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.94
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.94
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.94
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.94
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.94
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.94
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.94
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.94
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.94
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.94
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.94
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.94
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.94
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.94
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.94
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.94
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.94
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.94
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.94
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.94
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.94
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.94
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.93
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.93
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.93
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.92
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.86
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.92
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.91
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.91
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.91
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.91
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.9
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.9
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.9
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.9
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.9
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.9
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.89
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.89
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.89
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.89
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.88
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.88
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.88
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.87
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.87
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.87
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.87
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.87
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.87
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.86
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.86
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.86
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.86
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.86
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.86
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.86
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.86
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.85
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.85
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.85
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.85
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.85
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.85
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.85
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.84
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.84
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.84
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.84
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.84
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.84
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.84
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.83
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.83
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.83
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.82
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.82
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.82
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.81
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.81
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.81
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.81
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.8
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.8
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.8
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.8
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.8
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.8
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.8
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.8
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.8
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.8
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.8
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.8
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.79
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.79
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.79
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.79
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.78
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.78
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.78
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.76
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.75
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.74
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.73
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.72
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.72
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.71
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.71
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.7
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.69
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.69
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.68
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.68
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.67
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.66
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.64
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.58
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.58
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.57
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.56
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.56
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.52
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.51
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.51
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.5
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.49
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.46
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.45
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.44
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.44
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.41
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.27
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.26
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.24
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.18
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.16
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.15
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.09
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.06
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.05
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.97
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.78
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.66
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.57
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.55
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.51
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.48
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.44
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.43
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.4
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.4
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.37
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.17
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.09
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.01
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.94
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.9
2xxa_A	433	Signal recognition particle protein; protein trans	97.87
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.84
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.84
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.83
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.79
3end_A	307	Light-independent protochlorophyllide reductase ir	97.68
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.68
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.63
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.52
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.49
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.48
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.48
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.47
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.46
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.43
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.41
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.39
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.38
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.38
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.38
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.37
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.36
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.36
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.34
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.32
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.31
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.27
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.27
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.27
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.27
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.26
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.25
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.24
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.24
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.24
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.24
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.23
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.23
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.22
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.22
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.21
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.21
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.21
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.2
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.2
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.17
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.17
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.17
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.16
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.16
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.16
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.16
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.15
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.15
1g6h_A	257	High-affinity branched-chain amino acid transport	97.15
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.15
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.14
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.13
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.12
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.11
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.11
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.11
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.11
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.1
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.09
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.09
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.09
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.09
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.09
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.09
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.08
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.08
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.08
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.08
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.08
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.07
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.07
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.07
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.06
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.06
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.06
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.05
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.05
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.05
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.05
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.05
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.05
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.04
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.04
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.04
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.03
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.03
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.03
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.03
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.02
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.02
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.01
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.01
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.01
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.0
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.0
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.99
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.99
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.97
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.97
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.97
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.96
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.95
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.94
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.94
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.94
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.93
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.93
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.93
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.93
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.93
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.91
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.91
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.91
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.9
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.9
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.89
1via_A	175	Shikimate kinase; structural genomics, transferase	96.89
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.89
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.88
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.88
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.88
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.87
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.87
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.86
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.85
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.84
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.83
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.83
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.82
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.82
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.82
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.82
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.81
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.81
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.8
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.79
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.79
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.78
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.78
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.77
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.76
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.76
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.76
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.75
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.75
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.75
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.74
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.73
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.73
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.73
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.72
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.71
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.71
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.71
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.7
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.7
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.7
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.7
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.67
3bos_A	242	Putative DNA replication factor; P-loop containing	96.66
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.65
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.64
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.63
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.59
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.58
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.57
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.57
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.54
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.52
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.52
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.52
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.52
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.52
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.51
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.51
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.51
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.5
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.49
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.48
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.46
2og2_A	359	Putative signal recognition particle receptor; nuc	96.46
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.45
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.44
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.43
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.43
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.41
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.4
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.4
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.4
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.4
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.4
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.4
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.36
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.33
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.32
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.32
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.31
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.31
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.29
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.29
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.28
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.28
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.26
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.24
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.24
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.23
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.22
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.22
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.2
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.18
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.18
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.17
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	96.17
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.16
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.13
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.1
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.09
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.09
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.08
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.08
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.07
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.05
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.03
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.03
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.03
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.0
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.99
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.98
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.96
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.95
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.94
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.93
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.93
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.92
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.92
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.91
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.9
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.9
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.88
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.85
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.83
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.83
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.82
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	95.8
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.79
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.78
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.75
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.72
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.71
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.7
3co5_A	143	Putative two-component system transcriptional RES	95.7
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.7
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.69
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.69
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.64
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.62
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.6
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.58
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.56
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	95.54
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	95.51
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.51

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6.9e-33  Score=192.70  Aligned_cols=162  Identities=35%  Similarity=0.673  Sum_probs=133.7

Q ss_pred             ChhhhHHHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848            1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (170)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   80 (170)
                      ||.++++++. .++++.++|+++|++|+|||||++++.+      +... .+.+|.+.....+...+..+.+|||||++.
T Consensus         1 m~~~~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~   72 (187)
T 1zj6_A            1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSM------NEVV-HTSPTIGSNVEEIVINNTRFLMWDIGGQES   72 (187)
T ss_dssp             -CHHHHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHT------TSCE-EEECCSCSSCEEEEETTEEEEEEECCC---
T ss_pred             CchHHHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhc------CCCC-cCcCCCccceEEEEECCEEEEEEECCCCHh
Confidence            8999999998 6778899999999999999999999986      2222 445666666667778889999999999999


Q ss_pred             chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccccccee
Q 030848           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC  160 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  160 (170)
                      +...+..+++.+|++|+|+|++++.+++....++..+.......+.|+++|+||+|+.+....+++.+.+....+....+
T Consensus        73 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~  152 (187)
T 1zj6_A           73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQW  152 (187)
T ss_dssp             -CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCE
T ss_pred             HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCc
Confidence            98888999999999999999999999999999999988764446899999999999988777788777776444445678


Q ss_pred             EEEeeeccCC
Q 030848          161 MFEAVSGYDG  170 (170)
Q Consensus       161 ~~~~~Sa~~g  170 (170)
                      +++++||++|
T Consensus       153 ~~~~~Sa~~g  162 (187)
T 1zj6_A          153 HIQACCALTG  162 (187)
T ss_dssp             EEEECBTTTT
T ss_pred             EEEEccCCCC
Confidence            9999999986

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-32  Score=190.50  Aligned_cols=163  Identities=39%  Similarity=0.675  Sum_probs=135.2

Q ss_pred             ChhhhHHHHhhhcc-CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC
Q 030848            1 MFSLFYGLWKYIFT-KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP   79 (170)
Q Consensus         1 ~~~~~~~~~~~~~~-~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   79 (170)
                      ||.+++++++.++. ++.++|+++|++|+|||||++++.+      +.. ....++.+.....+...+..+.+|||||++
T Consensus         1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~   73 (183)
T 1moz_A            1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQI------GEV-VTTKPTIGFNVETLSYKNLKLNVWDLGGQT   73 (183)
T ss_dssp             -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC------SEE-EEECSSTTCCEEEEEETTEEEEEEEEC---
T ss_pred             CchHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc------CCc-CccCCcCccceEEEEECCEEEEEEECCCCH
Confidence            89999999999888 8999999999999999999999975      111 344566666666777888999999999999


Q ss_pred             cchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccce
Q 030848           80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERV  159 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~  159 (170)
                      .+...+..+++.+|++++|+|++++.+++....++..+.......+.|+++++||+|+.+....+++.+.+.........
T Consensus        74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~  153 (183)
T 1moz_A           74 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRS  153 (183)
T ss_dssp             -CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSC
T ss_pred             hHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCc
Confidence            88888888999999999999999999999999999998776555789999999999998877788888877755555567


Q ss_pred             eEEEeeeccCC
Q 030848          160 CMFEAVSGYDG  170 (170)
Q Consensus       160 ~~~~~~Sa~~g  170 (170)
                      ++++++||++|
T Consensus       154 ~~~~~~Sa~~~  164 (183)
T 1moz_A          154 WSIVASSAIKG  164 (183)
T ss_dssp             EEEEEEBGGGT
T ss_pred             eEEEEccCCCC
Confidence            89999999986

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=100.00  E-value=5.4e-32  Score=187.83  Aligned_cols=161  Identities=39%  Similarity=0.665  Sum_probs=127.3

Q ss_pred             ChhhhHHHHhhhcc-CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC
Q 030848            1 MFSLFYGLWKYIFT-KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP   79 (170)
Q Consensus         1 ~~~~~~~~~~~~~~-~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   79 (170)
                      || +++ .+.+.+. ++.++|+++|++|+|||||++++.+      +. ...+.+|.+.....+...+..+.+|||||++
T Consensus         3 mg-~~~-~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~------~~-~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~   73 (186)
T 1ksh_A            3 MG-LLT-ILKKMKQKERELRLLMLGLDNAGKTTILKKFNG------ED-VDTISPTLGFNIKTLEHRGFKLNIWDVGGQK   73 (186)
T ss_dssp             ----------------CCEEEEEECSTTSSHHHHHHHHTT------CC-CSSCCCCSSEEEEEEEETTEEEEEEEECCSH
T ss_pred             cc-hhH-HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhc------CC-CCcccccCccceEEEEECCEEEEEEECCCCH
Confidence            56 555 5555555 7889999999999999999999986      22 4455677777777788888999999999999


Q ss_pred             cchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccce
Q 030848           80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERV  159 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~  159 (170)
                      .+...+..+++.+|++++|+|++++.+++....++..+.......+.|+++++||+|+.+....+++.+.+.........
T Consensus        74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  153 (186)
T 1ksh_A           74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHH  153 (186)
T ss_dssp             HHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSC
T ss_pred             hHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCc
Confidence            99888888999999999999999999999999999888776555689999999999998877777777777644444567


Q ss_pred             eEEEeeeccCC
Q 030848          160 CMFEAVSGYDG  170 (170)
Q Consensus       160 ~~~~~~Sa~~g  170 (170)
                      ++++++||++|
T Consensus       154 ~~~~~~Sa~~~  164 (186)
T 1ksh_A          154 WRIQGCSAVTG  164 (186)
T ss_dssp             EEEEECCTTTC
T ss_pred             eEEEEeeCCCC
Confidence            89999999986

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=100.00  E-value=2.5e-32  Score=190.09  Aligned_cols=163  Identities=36%  Similarity=0.601  Sum_probs=134.1

Q ss_pred             ChhhhHHHHh--hhcc-CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC
Q 030848            1 MFSLFYGLWK--YIFT-KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG   77 (170)
Q Consensus         1 ~~~~~~~~~~--~~~~-~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   77 (170)
                      ||.+++++++  +.+. ++.++|+++|++|+|||||++++..      +.. ....+|.+.....+...+..+.+|||||
T Consensus         3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~~~~~Dt~G   75 (189)
T 2x77_A            3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHL------GDV-VTTVPTVGVNLETLQYKNISFEVWDLGG   75 (189)
T ss_dssp             ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCC------SCC-EEECSSTTCCEEEEEETTEEEEEEEECC
T ss_pred             hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHc------CCC-CCcCCCCceEEEEEEECCEEEEEEECCC
Confidence            8878877777  5566 7899999999999999999999964      221 2345677777777888889999999999


Q ss_pred             CCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccccc
Q 030848           78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDE  157 (170)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~  157 (170)
                      ++.+...+..+++.+|++++|+|++++.+++....++..+.......+.|+++|+||+|+.+....+++.+.........
T Consensus        76 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~  155 (189)
T 2x77_A           76 QTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMN  155 (189)
T ss_dssp             SSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCS
T ss_pred             CHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccC
Confidence            99988888888999999999999999999999999998888765557899999999999988777777777766555556


Q ss_pred             ceeEEEeeeccCC
Q 030848          158 RVCMFEAVSGYDG  170 (170)
Q Consensus       158 ~~~~~~~~Sa~~g  170 (170)
                      ..+++++|||++|
T Consensus       156 ~~~~~~~~Sa~~~  168 (189)
T 2x77_A          156 RTWTIVKSSSKTG  168 (189)
T ss_dssp             SCEEEEECCTTTC
T ss_pred             CceEEEEccCCCc
Confidence            6789999999986

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.98  E-value=2.3e-31  Score=186.06  Aligned_cols=161  Identities=36%  Similarity=0.667  Sum_probs=130.3

Q ss_pred             hhhHHHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcch
Q 030848            3 SLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR   82 (170)
Q Consensus         3 ~~~~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   82 (170)
                      +++..+++..+.++.++|+++|++|+|||||++++..      +.. ....||.+.....++..+..+.+|||||++.+.
T Consensus        15 ~~~~~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~   87 (192)
T 2b6h_A           15 VPRGSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKL------GEI-VTTIPTIGFNVETVEYKNICFTVWDVGGQDKIR   87 (192)
T ss_dssp             --CCCGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCS------SCC-EEEEEETTEEEEEEEETTEEEEEEECC-----C
T ss_pred             chHHHHHHHhccCCccEEEEECCCCCCHHHHHHHHHh------CCc-cccCCcCceeEEEEEECCEEEEEEECCCCHhHH
Confidence            3556677888888999999999999999999999965      222 234567777777788888999999999999999


Q ss_pred             hhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEE
Q 030848           83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMF  162 (170)
Q Consensus        83 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (170)
                      ..+..+++.+|++|+|+|++++.+++....++..+.......+.|+++|+||+|+.+....+++.+.+.........+++
T Consensus        88 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~  167 (192)
T 2b6h_A           88 PLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYV  167 (192)
T ss_dssp             TTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEE
T ss_pred             HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEE
Confidence            99999999999999999999999999999999988776555689999999999998877777777777655555667899


Q ss_pred             EeeeccCC
Q 030848          163 EAVSGYDG  170 (170)
Q Consensus       163 ~~~Sa~~g  170 (170)
                      ++|||++|
T Consensus       168 ~~~SA~~g  175 (192)
T 2b6h_A          168 QATCATQG  175 (192)
T ss_dssp             EECBTTTT
T ss_pred             EECcCCCc
Confidence            99999986

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=1.2e-30  Score=182.05  Aligned_cols=163  Identities=33%  Similarity=0.528  Sum_probs=123.0

Q ss_pred             ChhhhHHHHhhh-ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC
Q 030848            1 MFSLFYGLWKYI-FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP   79 (170)
Q Consensus         1 ~~~~~~~~~~~~-~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   79 (170)
                      |+.++++.+... ...+.++|+++|++|+|||||++++.+      +.. ..+.+|.+.....+...+..+.+|||||++
T Consensus         6 ~~~~~~~~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~   78 (190)
T 1m2o_B            6 IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKN------DRL-ATLQPTWHPTSEELAIGNIKFTTFDLGGHI   78 (190)
T ss_dssp             ------------------CEEEEEESTTSSHHHHHHHHHH------SCC-CCCCCCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred             HHHHHHHHHHHhhccCCccEEEEECCCCCCHHHHHHHHhc------CCC-CccccCCCCCeEEEEECCEEEEEEECCCCH
Confidence            455666665544 456788999999999999999999986      221 234566666677788888999999999999


Q ss_pred             cchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccc-----
Q 030848           80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKK-----  154 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~-----  154 (170)
                      .+...+..+++.+|++++|+|++++.+++....++..+.......+.|+++++||+|+.+..+.+++.+.+....     
T Consensus        79 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  158 (190)
T 1m2o_B           79 QARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQ  158 (190)
T ss_dssp             GGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC--
T ss_pred             HHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccc
Confidence            998888889999999999999999999999999999887765556899999999999988778888888776332     


Q ss_pred             --cccceeEEEeeeccCC
Q 030848          155 --LDERVCMFEAVSGYDG  170 (170)
Q Consensus       155 --~~~~~~~~~~~Sa~~g  170 (170)
                        .....+++++|||++|
T Consensus       159 ~~~~~~~~~~~~~Sa~~g  176 (190)
T 1m2o_B          159 RIEGQRPVEVFMCSVVMR  176 (190)
T ss_dssp             -CCSSCCEEEEECBTTTT
T ss_pred             cccccceEEEEEeECCcC
Confidence              2235689999999986

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.97  E-value=2.1e-31  Score=189.52  Aligned_cols=144  Identities=25%  Similarity=0.400  Sum_probs=114.6

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE--EE--ecCeEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE--VSNSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      .+++||+++|++|+|||||++++..      +.+...+.+|++..+..  +.  .....+.||||+|++++..++..+++
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~------~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~   84 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMY------DSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIR   84 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHH------SCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHT
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHh------CCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhc
Confidence            3568999999999999999999987      56666777887765443  22  33467999999999999999999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .++++++|||++++.+|+.+..|+..+..... ++.|+++|+||+|+.+  ..+.++..+.++     ..+++|++|||+
T Consensus        85 ~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~-~~~piilVgNK~Dl~~~r~V~~~e~~~~a~-----~~~~~~~e~SAk  158 (216)
T 4dkx_A           85 DSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERKAK-----ELNVMFIETSAK  158 (216)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEEBTT
T ss_pred             cccEEEEEeecchhHHHHHHHHHHHHHHHhcC-CCCeEEEEeeccchHhcCcccHHHHhhHHH-----HhCCeeEEEeCC
Confidence            99999999999999999999999998876543 6799999999999976  578888888887     556789999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       159 tg  160 (216)
T 4dkx_A          159 AG  160 (216)
T ss_dssp             TT
T ss_pred             CC
Confidence            87

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=3.8e-30  Score=179.07  Aligned_cols=153  Identities=35%  Similarity=0.663  Sum_probs=129.5

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        12 ~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      ...++.+||+++|++|+|||||++++.+      +.....+.+|.+.....+...+..+.+|||||++.+...+..+++.
T Consensus        17 ~~~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   90 (188)
T 1zd9_A           17 RGSKEEMELTLVGLQYSGKTTFVNVIAS------GQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRG   90 (188)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHH------SCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTT
T ss_pred             cCCCCccEEEEECCCCCCHHHHHHHHHc------CCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHcc
Confidence            3456789999999999999999999987      3344456678888877788889999999999999999999999999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +|++|+|+|++++.+++....++..+.......+.|+++|+||+|+.+....+++.+.+.........++++++||++|
T Consensus        91 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g  169 (188)
T 1zd9_A           91 VSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEK  169 (188)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCC
Confidence            9999999999999999999999998877644468999999999999887777777777665545556789999999986

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=2e-30  Score=179.57  Aligned_cols=149  Identities=41%  Similarity=0.708  Sum_probs=125.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   94 (170)
                      ...++|+++|++|+|||||++++.+      . ....+.+|.+.....+...+..+.+|||||++.+...+..+++.+|+
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~------~-~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   86 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLAS------E-DISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDI   86 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCC------S-CCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhc------C-CCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence            5789999999999999999999976      1 22345677777766777888999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +++|+|++++.+++....++..+.......+.|+++++||+|+.+....+++.+.+.........+++++|||++|
T Consensus        87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  162 (181)
T 1fzq_A           87 LIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTG  162 (181)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCC
Confidence            9999999999999999989888876555568999999999999887777777776664444456789999999987

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=7.9e-30  Score=173.27  Aligned_cols=146  Identities=36%  Similarity=0.684  Sum_probs=122.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEE
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF   97 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   97 (170)
                      +||+++|++|+|||||++++.+..      .. ...||.+.....+...+..+.+|||||++.+...+..+++.+|++++
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~------~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   73 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGE------IV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   73 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHC------SS-CCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC------cC-cccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEE
Confidence            589999999999999999997621      11 23456676666778888999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           98 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        98 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      |+|++++.+++....++..+......++.|+++++||+|+.+....+++.+...........+++++|||++|
T Consensus        74 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  146 (164)
T 1r8s_A           74 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSG  146 (164)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCC
Confidence            9999999999999999988877655568999999999999887777777777665545556789999999986

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=2.8e-30  Score=181.39  Aligned_cols=151  Identities=31%  Similarity=0.509  Sum_probs=118.8

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      ...+.++|+++|++|+|||||++++.+      +.. ..+.+|.+.....+...+..+.+|||||++.+...+..+++.+
T Consensus        21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   93 (198)
T 1f6b_A           21 LYKKTGKLVFLGLDNAGKTTLLHMLKD------DRL-GQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAI   93 (198)
T ss_dssp             CTTCCEEEEEEEETTSSHHHHHHHHSC------C-------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhc------CCC-CccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcC
Confidence            456789999999999999999999975      111 2344555555566778889999999999999988888899999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccc---------c---cccee
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKK---------L---DERVC  160 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~---------~---~~~~~  160 (170)
                      |++++|+|++++.+++....|+..+.......+.|+++++||+|+.+....+++.+.+....         +   ....+
T Consensus        94 d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (198)
T 1f6b_A           94 NGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPL  173 (198)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCE
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceE
Confidence            99999999999999999999999887765556899999999999988778888888776332         1   12567


Q ss_pred             EEEeeeccCC
Q 030848          161 MFEAVSGYDG  170 (170)
Q Consensus       161 ~~~~~Sa~~g  170 (170)
                      ++++|||++|
T Consensus       174 ~~~~~SA~~g  183 (198)
T 1f6b_A          174 EVFMCSVLKR  183 (198)
T ss_dssp             EEEECBTTTT
T ss_pred             EEEEEECCCC
Confidence            9999999987

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=2.1e-29  Score=172.14  Aligned_cols=149  Identities=38%  Similarity=0.640  Sum_probs=126.0

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   94 (170)
                      ++.++|+++|++|+|||||++++.+      +.. ....++.+.....+...+..+.+|||||++.+...+..+++.+|+
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   77 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQV------GEV-VTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDA   77 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH------SSC-CCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc------CCC-CCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCE
Confidence            4679999999999999999999976      222 234567777777788889999999999999999888899999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +++|+|++++.+++....++..+.......+.|+++++||+|+.+.....++.+.+.........++++++||++|
T Consensus        78 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  153 (171)
T 1upt_A           78 VIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKG  153 (171)
T ss_dssp             EEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCC
Confidence            9999999999999999999988877655568999999999999887777777777665445556789999999986

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.6e-29  Score=176.12  Aligned_cols=152  Identities=35%  Similarity=0.639  Sum_probs=125.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      ..+.++|+++|.+|+|||||++++.+...     ....+.+|.+.....+...+..+.+|||||++.+...+..+++.+|
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~-----~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   92 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNA-----QSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQ   92 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGG-----CCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCS
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCC-----CCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCC
Confidence            34679999999999999999999976221     2233556777777778888899999999999999998889999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCC--CCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDL--QGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++|+|+|++++.+++....++..+......  .+.|+++|+||+|+.+....+++.+.+....+....++++++||++|
T Consensus        93 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  171 (190)
T 2h57_A           93 AIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKG  171 (190)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence            999999999999999999999988876544  57899999999999887788888877764444456789999999986

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=1.2e-29  Score=175.59  Aligned_cols=149  Identities=35%  Similarity=0.649  Sum_probs=125.4

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   94 (170)
                      .+.+||+++|.+|+|||||++++.+      +.. ....++.+.....+...+..+.+|||||++.+...+..+++.+|+
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   91 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSM------NEV-VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEF   91 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHT------TSC-EEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhc------CCC-CccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            4678999999999999999999986      222 445566666666777888999999999999998888899999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +|+|+|++++.+++....++..+.......+.|+++++||+|+.+....+++.+.+.........++++++||++|
T Consensus        92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g  167 (181)
T 2h17_A           92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTG  167 (181)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence            9999999999999999999998887654568999999999999887778888887765555556789999999986

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.97  E-value=1e-29  Score=177.83  Aligned_cols=153  Identities=33%  Similarity=0.599  Sum_probs=125.3

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCC-cccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhh
Q 030848           12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD-RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        12 ~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      .......+|+++|.+|+|||||++++.+      +.... .+.+|.+.....++..+..+.+|||||++.+...+..+++
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   85 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKP------AQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYD   85 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSC------CC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCT
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhc------CCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHh
Confidence            3456788999999999999999999976      33333 4567888888788888999999999999999999999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCC-------CCCcEEEEeeCCCccccCCHHHHHhHhCcccc-ccceeEE
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL-------QGAPLLILANKQDLPDAVSADELARYLDLKKL-DERVCMF  162 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~  162 (170)
                      .+|++|+|+|++++.+++....|+..+......       .+.|+++|+||+|+.+....+++.+.+..... ....+++
T Consensus        86 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (199)
T 4bas_A           86 NIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVI  165 (199)
T ss_dssp             TCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEE
T ss_pred             cCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEE
Confidence            999999999999999999999999888765221       37899999999999988777777777764333 4577899


Q ss_pred             EeeeccCC
Q 030848          163 EAVSGYDG  170 (170)
Q Consensus       163 ~~~Sa~~g  170 (170)
                      ++|||++|
T Consensus       166 ~~~Sa~~g  173 (199)
T 4bas_A          166 FASNGLKG  173 (199)
T ss_dssp             EECBTTTT
T ss_pred             EEeeCCCc
Confidence            99999986

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.96  E-value=3.7e-28  Score=165.15  Aligned_cols=145  Identities=20%  Similarity=0.301  Sum_probs=112.8

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEec--CeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      .+.+||+++|++|+|||||++++.+      +.....+.++...... .+...  ...+.+||+||++.+...+..+++.
T Consensus         2 ~~~~~i~v~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~   75 (168)
T 1u8z_A            2 LALHKVIMVGSGGVGKSALTLQFMY------DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRS   75 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHh------CccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhc
Confidence            4679999999999999999999987      2233344444444432 23333  3579999999999999999999999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +|++++|+|++++.+++....|+..+.......+.|+++++||+|+.+  ....++..+.++     ...++++++||++
T Consensus        76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~  150 (168)
T 1u8z_A           76 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD-----QWNVNYVETSAKT  150 (168)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEECCTTT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHH-----HcCCeEEEeCCCC
Confidence            999999999999999999999988887765556899999999999976  455667766665     4456899999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       151 ~  151 (168)
T 1u8z_A          151 R  151 (168)
T ss_dssp             C
T ss_pred             C
Confidence            6

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.96  E-value=3.6e-28  Score=165.30  Aligned_cols=145  Identities=23%  Similarity=0.393  Sum_probs=113.6

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE-EEe--cCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IEV--SNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      +.+||+++|++|+|||||++++.+      +.....+.++.+..... +..  ....+.+||+||++.+...+..+++.+
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   75 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQ------GIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNG   75 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH------CCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHC
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccC
Confidence            468999999999999999999987      33334444555544332 222  346799999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      |++++|+|++++.+++....|+..+.......+.|+++++||+|+.+.  ...++..+..+.    ...++++++||++|
T Consensus        76 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~  151 (167)
T 1c1y_A           76 QGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ----WCNCAFLESSAKSK  151 (167)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH----TTSCEEEECBTTTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHH----ccCCcEEEecCCCC
Confidence            999999999999999998888888876544468999999999999763  445666655541    12578999999986

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.96  E-value=4.9e-28  Score=182.05  Aligned_cols=150  Identities=37%  Similarity=0.698  Sum_probs=125.6

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      .++.+||+++|.+|+|||||++++.+      +.. ....+|.+.....++..+..+.+|||||++.+...+..+++.+|
T Consensus       162 ~~~~~kI~ivG~~~vGKSsLl~~l~~------~~~-~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad  234 (329)
T 3o47_A          162 GKKEMRILMVGLDAAGKTTILYKLKL------GEI-VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQ  234 (329)
T ss_dssp             -CCSEEEEEEESTTSSHHHHHHHTCS------SCC-EEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEE
T ss_pred             ccCcceEEEECCCCccHHHHHHHHhC------CCC-CCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCC
Confidence            45678999999999999999999975      222 23346888888888889999999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++|+|+|++++.+++....++..+......++.|+++|+||+|+.+....+++.+.+.........++++++||++|
T Consensus       235 ~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g  311 (329)
T 3o47_A          235 GLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSG  311 (329)
T ss_dssp             EEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTT
T ss_pred             EEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCC
Confidence            99999999999999999999998887766678999999999999988888888888876666677899999999986

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.96  E-value=4.2e-28  Score=167.37  Aligned_cols=146  Identities=22%  Similarity=0.253  Sum_probs=114.5

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ..+.++|+++|++|+|||||++++..      +.....+.++.+.... .+...+  ..+.+|||||++.+...+..+++
T Consensus         3 ~~~~~ki~~~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   76 (181)
T 3t5g_A            3 QSKSRKIAILGYRSVGKSSLTIQFVE------GQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSI   76 (181)
T ss_dssp             CEEEEEEEEEESTTSSHHHHHHHHHH------SSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTT
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHh
Confidence            34679999999999999999999986      3334444555555432 233333  67899999999998888888999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+  ....++..+.++     ...++++++||+
T Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~  151 (181)
T 3t5g_A           77 DINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE-----SWNAAFLESSAK  151 (181)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCEEEECCTT
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHH-----HhCCcEEEEecC
Confidence            9999999999999999999999998887766657899999999999964  456677777766     445689999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       152 ~~  153 (181)
T 3t5g_A          152 EN  153 (181)
T ss_dssp             SH
T ss_pred             CC
Confidence            75

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.96  E-value=1.3e-27  Score=162.84  Aligned_cols=144  Identities=24%  Similarity=0.395  Sum_probs=113.8

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe--cCeEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      .+.++|+++|++|+|||||++++.+      +.......++.+....  .+..  ....+.+||+||++.+...+..+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~   77 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVK------GQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYR   77 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHH------SCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHT
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhcc
Confidence            4679999999999999999999987      3333334455554432  2333  3568999999999999999999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+|++++|+|++++.+++....|+..+..... ++.|+++++||+|+.+  ....++..+.+.     ...++++++||+
T Consensus        78 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~  151 (170)
T 1r2q_A           78 GAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANKRAVDFQEAQSYAD-----DNSLLFMETSAK  151 (170)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTT
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccCccccccCHHHHHHHHH-----HcCCeEEEEeCC
Confidence            99999999999999999998888888866433 6789999999999975  345566666655     455789999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       152 ~g  153 (170)
T 1r2q_A          152 TS  153 (170)
T ss_dssp             TC
T ss_pred             CC
Confidence            86

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.96  E-value=5e-28  Score=167.28  Aligned_cols=146  Identities=21%  Similarity=0.281  Sum_probs=116.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ..+.+||+++|++|+|||||++++..      ......+.+++..... .....+  ..+.+||+||++.+...+..+++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   88 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQ------KIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMR   88 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHH------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHh
Confidence            45789999999999999999999986      3333444455544432 233333  45777999999999999999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+|++++|+|++++.+++.+..|+..+.......+.|+++++||+|+.+  ....++..+.++     ...++++++||+
T Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~  163 (183)
T 3kkq_A           89 TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT-----KYNIPYIETSAK  163 (183)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH-----HHTCCEEEEBCS
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH-----HhCCeEEEeccC
Confidence            9999999999999999999999988887655557899999999999976  566677777666     344689999999


Q ss_pred             -CC
Q 030848          169 -DG  170 (170)
Q Consensus       169 -~g  170 (170)
                       +|
T Consensus       164 ~~~  166 (183)
T 3kkq_A          164 DPP  166 (183)
T ss_dssp             SSC
T ss_pred             CCC
Confidence             65

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.96  E-value=2.3e-27  Score=164.65  Aligned_cols=143  Identities=20%  Similarity=0.298  Sum_probs=110.9

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      .+.+.+||+++|++|+|||||++++.+      +.....+.++.+.....+...+  ..+.+|||+|++.+.     +++
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~   84 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLT------GTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAA   84 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHH------SSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHH
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhc------CCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eec
Confidence            456789999999999999999999987      3333334445443333444444  568889999998876     678


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc----ccCCHHHHHhHhCccccccceeEEEeee
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP----DAVSADELARYLDLKKLDERVCMFEAVS  166 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~S  166 (170)
                      .+|++++|||++++.+++.+..|+..+.......+.|+++++||+|+.    .....++..+.++..    ..++|++||
T Consensus        85 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~----~~~~~~e~S  160 (184)
T 3ihw_A           85 WVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDL----KRCTYYETC  160 (184)
T ss_dssp             HCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHT----TTCEEEEEB
T ss_pred             CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHc----CCCeEEEec
Confidence            899999999999999999999999988776544678999999999994    245666776666521    136899999


Q ss_pred             ccCC
Q 030848          167 GYDG  170 (170)
Q Consensus       167 a~~g  170 (170)
                      |++|
T Consensus       161 a~~~  164 (184)
T 3ihw_A          161 ATYG  164 (184)
T ss_dssp             TTTT
T ss_pred             CCCC
Confidence            9986

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.96  E-value=7.1e-28  Score=163.59  Aligned_cols=144  Identities=25%  Similarity=0.389  Sum_probs=112.5

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee-EEEEEecC--eEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      +.++|+++|++|+|||||++++.+      +.....+.++.... ...+...+  ..+.+|||||++.+...+..+++.+
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~   75 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVT------GTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG   75 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHH------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHc------CCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccC
Confidence            568999999999999999999987      22333333444332 22333433  5599999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      |++++|+|++++.+++....++..+.......+.|+++++||+|+.+  ....++..+..+     ...++++++||++|
T Consensus        76 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  150 (167)
T 1kao_A           76 QGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE-----EWGCPFMETSAKSK  150 (167)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSCEEEECTTCH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHH-----HhCCCEEEecCCCC
Confidence            99999999999999999999998887765556899999999999875  344555555554     33458999999975

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.96  E-value=3.5e-28  Score=170.78  Aligned_cols=149  Identities=21%  Similarity=0.221  Sum_probs=111.9

Q ss_pred             hhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHH
Q 030848           11 YIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEK   87 (170)
Q Consensus        11 ~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~   87 (170)
                      .+...+.+||+++|.+|+|||||++++.+      +.....+.++.+....   .++.....+.+|||||++.+...+..
T Consensus        18 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~   91 (201)
T 3oes_A           18 GMPLVRYRKVVILGYRCVGKTSLAHQFVE------GEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYS   91 (201)
T ss_dssp             -----CEEEEEEEESTTSSHHHHHHHHHH------SCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGG
T ss_pred             CCCCCCcEEEEEECCCCcCHHHHHHHHHh------CCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHH
Confidence            34456789999999999999999999987      3333444455554432   22345678999999999999888889


Q ss_pred             HhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEee
Q 030848           88 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAV  165 (170)
Q Consensus        88 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (170)
                      +++.+|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+  .....+..+..+     ...++++++
T Consensus        92 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~  166 (201)
T 3oes_A           92 FIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAE-----SWGATFMES  166 (201)
T ss_dssp             GTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEC
T ss_pred             HHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHH-----HhCCeEEEE
Confidence            9999999999999999999999999999998776667899999999999975  445566666655     445689999


Q ss_pred             eccCC
Q 030848          166 SGYDG  170 (170)
Q Consensus       166 Sa~~g  170 (170)
                      ||++|
T Consensus       167 Sa~~~  171 (201)
T 3oes_A          167 SAREN  171 (201)
T ss_dssp             CTTCH
T ss_pred             eCCCC
Confidence            99975

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=2.3e-27  Score=165.49  Aligned_cols=146  Identities=23%  Similarity=0.331  Sum_probs=115.6

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE--EE--ecCeEEEEEEcCCCCcchhhHHHH
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE--VSNSKLVFWDLGGQPGLRSIWEKY   88 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~   88 (170)
                      .....+||+++|++|+|||||++++.+      +.......++.+.....  +.  .....+.+|||||++.+...+..+
T Consensus        19 ~~~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~   92 (192)
T 2fg5_A           19 SAIRELKVCLLGDTGVGKSSIVCRFVQ------DHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMY   92 (192)
T ss_dssp             --CEEEEEEEEECTTSSHHHHHHHHHH------CCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHH
T ss_pred             ccCCceEEEEECcCCCCHHHHHHHHhc------CCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHh
Confidence            345679999999999999999999987      33333445555554332  22  245689999999999999999999


Q ss_pred             hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeee
Q 030848           89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVS  166 (170)
Q Consensus        89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S  166 (170)
                      ++.+|++|+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+  ....++..+.++     ...++++++|
T Consensus        93 ~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~S  166 (192)
T 2fg5_A           93 YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAE-----SIGAIVVETS  166 (192)
T ss_dssp             HTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----TTTCEEEECB
T ss_pred             hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEe
Confidence            999999999999999999999988888876543 35789999999999975  455667777665     4457899999


Q ss_pred             ccCC
Q 030848          167 GYDG  170 (170)
Q Consensus       167 a~~g  170 (170)
                      |++|
T Consensus       167 a~~~  170 (192)
T 2fg5_A          167 AKNA  170 (192)
T ss_dssp             TTTT
T ss_pred             CCCC
Confidence            9986

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.96  E-value=9.7e-28  Score=166.31  Aligned_cols=145  Identities=22%  Similarity=0.332  Sum_probs=111.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEecC--eEEEEEEcCCCCcchhhHHHHhhc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      ++.+||+++|++|+|||||++++.+      +.....+.++...... .+...+  ..+.+|||||++.+...+..+++.
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   75 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQ------NHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT   75 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHH------SSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHH
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhc
Confidence            4679999999999999999999987      2233333344433322 233333  458889999999999999999999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc-CCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA-VSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +|++++|+|++++.+++....|+..+.......+.|+++++||+|+.+. ...++..+...     ...++++++||++|
T Consensus        76 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g  150 (189)
T 4dsu_A           76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLAR-----SYGIPFIETSAKTR  150 (189)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHH-----HHTCCEEECCTTTC
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHH-----HcCCeEEEEeCCCC
Confidence            9999999999999999999999988887665578999999999999764 45555555555     34468999999986

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.96  E-value=2.3e-27  Score=166.75  Aligned_cols=149  Identities=19%  Similarity=0.270  Sum_probs=117.3

Q ss_pred             hhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEecC--eEEEEEEcCCCCcchhhHHH
Q 030848           11 YIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEK   87 (170)
Q Consensus        11 ~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~   87 (170)
                      .....+.++|+++|++|+|||||++++.+      +.....+.++...... .+...+  ..+.+|||||++.+...+..
T Consensus         8 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~   81 (206)
T 2bov_A            8 GQNSLALHKVIMVGSGGVGKSALTLQFMY------DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDN   81 (206)
T ss_dssp             ---CCCEEEEEEECSTTSSHHHHHHHHHH------SCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHH
T ss_pred             CCCCCceEEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHH
Confidence            34456789999999999999999999987      2233344455444432 333333  57999999999999999999


Q ss_pred             HhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEee
Q 030848           88 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAV  165 (170)
Q Consensus        88 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (170)
                      +++.+|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+  ....+++.+.++     ...++++++
T Consensus        82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~  156 (206)
T 2bov_A           82 YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVNYVET  156 (206)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEE
T ss_pred             HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHH-----HhCCeEEEE
Confidence            9999999999999999999999999988887765556899999999999976  455667766665     445689999


Q ss_pred             eccCC
Q 030848          166 SGYDG  170 (170)
Q Consensus       166 Sa~~g  170 (170)
                      ||++|
T Consensus       157 Sa~~g  161 (206)
T 2bov_A          157 SAKTR  161 (206)
T ss_dssp             CTTTC
T ss_pred             eCCCC
Confidence            99986

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.95  E-value=2.2e-27  Score=165.02  Aligned_cols=145  Identities=21%  Similarity=0.352  Sum_probs=116.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEec-----------CeEEEEEEcCCCCc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVS-----------NSKLVFWDLGGQPG   80 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----------~~~~~i~D~~G~~~   80 (170)
                      ...++|+++|++|+|||||++++.+      +.......++.+....   .+...           ...+.+|||||++.
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   82 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTD------GKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHH------SCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhc------CCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence            4579999999999999999999987      3333445566665543   23333           35899999999999


Q ss_pred             chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccc
Q 030848           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDER  158 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~  158 (170)
                      +...+..+++.+|++|+|+|++++.+++.+..|+..+.......+.|+++++||+|+.+  ....+++.+.+.     ..
T Consensus        83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~  157 (195)
T 3bc1_A           83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAE-----KY  157 (195)
T ss_dssp             GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HH
T ss_pred             HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-----Hc
Confidence            99999999999999999999999999999888888887665546899999999999976  445566666665     33


Q ss_pred             eeEEEeeeccCC
Q 030848          159 VCMFEAVSGYDG  170 (170)
Q Consensus       159 ~~~~~~~Sa~~g  170 (170)
                      .++++++||++|
T Consensus       158 ~~~~~~~Sa~~~  169 (195)
T 3bc1_A          158 GIPYFETSAANG  169 (195)
T ss_dssp             TCCEEECCTTTC
T ss_pred             CCCEEEEECCCC
Confidence            468999999986

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.95  E-value=2.6e-27  Score=163.17  Aligned_cols=145  Identities=24%  Similarity=0.360  Sum_probs=113.4

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEec--CeEEEEEEcCCCCcchhhHHHHh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYY   89 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~   89 (170)
                      ....+||+++|++|+|||||++++.+      +.......++++....  .+...  ...+.+||+||++.+...+..++
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   82 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVK------DQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY   82 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHH------CCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHH
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHc------CCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHh
Confidence            45679999999999999999999987      2233333344443322  23333  46899999999999999999999


Q ss_pred             hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeec
Q 030848           90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSG  167 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  167 (170)
                      +.+|++|+|+|++++.+++....|+..+..... ++.|+++++||+|+.+  ....++..+.++     ...++++++||
T Consensus        83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa  156 (181)
T 2efe_B           83 RGAAAAIIVFDVTNQASFERAKKWVQELQAQGN-PNMVMALAGNKSDLLDARKVTAEDAQTYAQ-----ENGLFFMETSA  156 (181)
T ss_dssp             TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCEEEECCS
T ss_pred             ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCcccccccCCHHHHHHHHH-----HcCCEEEEEEC
Confidence            999999999999999999999988888876533 5889999999999965  345666666665     34568999999


Q ss_pred             cCC
Q 030848          168 YDG  170 (170)
Q Consensus       168 ~~g  170 (170)
                      ++|
T Consensus       157 ~~g  159 (181)
T 2efe_B          157 KTA  159 (181)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            986

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.95  E-value=2.8e-27  Score=162.84  Aligned_cols=146  Identities=18%  Similarity=0.282  Sum_probs=115.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ....++|+++|++|+|||||++++.+      ......+.++++.... .+...+  ..+.+|||||++++...+..+++
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~   79 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQ------SYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMR   79 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHH------SSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHh------CcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHh
Confidence            45679999999999999999999987      3333445555555443 233443  57899999999999989999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+|++++|+|++++.+++.+..|+..+.......+.|+++++||+|+.+  ....++..+...     ...++++++||+
T Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~  154 (181)
T 2fn4_A           80 AGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGA-----SHHVAYFEASAK  154 (181)
T ss_dssp             HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECBTT
T ss_pred             hCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCeEEEecCC
Confidence            9999999999999999999999988886655556889999999999976  344555555554     345689999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       155 ~~  156 (181)
T 2fn4_A          155 LR  156 (181)
T ss_dssp             TT
T ss_pred             CC
Confidence            86

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.95  E-value=2e-27  Score=164.40  Aligned_cols=146  Identities=19%  Similarity=0.296  Sum_probs=115.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ..+.+||+++|++|+|||||++++.+      ......+.++...... .+...+  ..+.+||+||++.+...+..+++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   88 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMY------DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFR   88 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHH------SCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhh------CCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhc
Confidence            45779999999999999999999987      2233344445444432 233333  57999999999999999999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+|++++|+|++++.+++....|+..+.......+.|+++|+||+|+.+  ....++..+.++     ...++++++||+
T Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~  163 (187)
T 2a9k_A           89 SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVNYVETSAK  163 (187)
T ss_dssp             HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTT
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-----HcCCeEEEeCCC
Confidence            9999999999999999999999988887765556899999999999976  455667776665     445689999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       164 ~~  165 (187)
T 2a9k_A          164 TR  165 (187)
T ss_dssp             TC
T ss_pred             CC
Confidence            86

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.95  E-value=1.2e-27  Score=166.48  Aligned_cols=147  Identities=27%  Similarity=0.451  Sum_probs=113.7

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEEEecC--eEEEEEEcCCCCcch-hhHHH
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLR-SIWEK   87 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~i~D~~G~~~~~-~~~~~   87 (170)
                      ..++.+||+++|++|+|||||++++.+      +.......++.+...  ..+...+  ..+.+|||||++.+. ..+..
T Consensus        16 ~~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   89 (189)
T 1z06_A           16 SRSRIFKIIVIGDSNVGKTCLTYRFCA------GRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQH   89 (189)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHH------SSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHH
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHH
Confidence            345789999999999999999999987      233333344444332  3344443  689999999999888 78889


Q ss_pred             HhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEee
Q 030848           88 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAV  165 (170)
Q Consensus        88 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (170)
                      +++.+|++|+|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+  ....++..+..+     ...++++++
T Consensus        90 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~  164 (189)
T 1z06_A           90 YYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD-----THSMPLFET  164 (189)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCCEEEC
T ss_pred             HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHH-----HcCCEEEEE
Confidence            9999999999999999999999999988887765556899999999999976  345566655555     344689999


Q ss_pred             eccCC
Q 030848          166 SGYDG  170 (170)
Q Consensus       166 Sa~~g  170 (170)
                      ||++|
T Consensus       165 Sa~~~  169 (189)
T 1z06_A          165 SAKNP  169 (189)
T ss_dssp             CSSSG
T ss_pred             eCCcC
Confidence            99975

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.95  E-value=2e-27  Score=161.88  Aligned_cols=143  Identities=23%  Similarity=0.403  Sum_probs=112.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe--cCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      +.++|+++|++|+|||||++++.+      +.......++.+....  .+..  ....+.+||+||++.+...+..+++.
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~   75 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVS------NDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRN   75 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH------SCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTT
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhcc
Confidence            468999999999999999999987      3333344455554432  3333  34579999999999999999999999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc-----CCHHHHHhHhCccccccceeEEEeee
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA-----VSADELARYLDLKKLDERVCMFEAVS  166 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~S  166 (170)
                      +|++++|+|++++.+++....|+..+..... ++.|+++++||+|+.+.     ...++..+..+     ...++++++|
T Consensus        76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~S  149 (170)
T 1ek0_A           76 AQAALVVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKIDXLQEGGERKVAREEGEKLAE-----EKGLLFFETS  149 (170)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHH-----HHTCEEEECC
T ss_pred             CcEEEEEEecCChHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCccccccccCCCHHHHHHHHH-----HcCCEEEEEe
Confidence            9999999999999999999888888876542 67899999999999753     34445555544     3456899999


Q ss_pred             ccCC
Q 030848          167 GYDG  170 (170)
Q Consensus       167 a~~g  170 (170)
                      |++|
T Consensus       150 a~~~  153 (170)
T 1ek0_A          150 AKTG  153 (170)
T ss_dssp             TTTC
T ss_pred             CCCC
Confidence            9986

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.95  E-value=2.4e-27  Score=166.74  Aligned_cols=144  Identities=26%  Similarity=0.401  Sum_probs=110.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ...+||+++|++|+|||||++++.+      +.......+|++...  ..+...+  ..+.+|||||++.+...+..+++
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~  100 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKT------GAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYR  100 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHH------SCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHT
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhh------CCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHh
Confidence            4568999999999999999999987      333334445555333  3444444  68999999999999999999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCcccccccee-EEEeeec
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVC-MFEAVSG  167 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa  167 (170)
                      .+|++|+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+  ....+++.+.++     ...+ +++++||
T Consensus       101 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~~SA  174 (201)
T 2hup_A          101 SANGAILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAE-----HYDILCAIETSA  174 (201)
T ss_dssp             TCSEEEEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCSEEEECBT
T ss_pred             hCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHH-----HcCCCEEEEEeC
Confidence            9999999999999999999888888876643 36789999999999976  456667776665     3345 8999999


Q ss_pred             cCC
Q 030848          168 YDG  170 (170)
Q Consensus       168 ~~g  170 (170)
                      ++|
T Consensus       175 ~~g  177 (201)
T 2hup_A          175 KDS  177 (201)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            986

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.95  E-value=9.2e-28  Score=163.33  Aligned_cols=142  Identities=23%  Similarity=0.253  Sum_probs=93.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee---EEEEEecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN---IGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      .+||+++|++|+|||||++++.+....       ...++.+..   ...++.....+.+||+||++.+...+..+++.+|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   74 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDG-------PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGD   74 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------------CEEEEEEEETTEEEEEEEEECC---------------CC
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCcccc-------CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCC
Confidence            589999999999999999999652111       111222222   1123344567999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++++|+|++++.+++....|+..+.......+.|+++++||+|+.+  ....++..+...     ...++++++||++|
T Consensus        75 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  148 (166)
T 3q72_A           75 AYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----VFDCKFIETSAALH  148 (166)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHH-----HTTCEEEECBGGGT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHH-----HhCCcEEEeccCCC
Confidence            9999999999999999999999998766557899999999999975  445566655555     44578999999986

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.1e-27  Score=167.48  Aligned_cols=149  Identities=20%  Similarity=0.233  Sum_probs=112.9

Q ss_pred             hhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE-EEe--cCeEEEEEEcCCCCcchhhHH
Q 030848           10 KYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IEV--SNSKLVFWDLGGQPGLRSIWE   86 (170)
Q Consensus        10 ~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~   86 (170)
                      ..+..++.+||+++|++|+|||||++++.+      +.....+.++.+..... +..  ....+.+||+||++. ...+.
T Consensus        21 ~~~~~~~~~ki~v~G~~~vGKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~   93 (196)
T 2atv_A           21 QSMAKSAEVKLAIFGRAGVGKSALVVRFLT------KRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQRE   93 (196)
T ss_dssp             ------CCEEEEEECCTTSSHHHHHHHHHH------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHH
T ss_pred             hccCCCCceEEEEECCCCCCHHHHHHHHHh------CCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchh
Confidence            334456789999999999999999999987      33333444555544332 333  346799999999888 77788


Q ss_pred             HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEe
Q 030848           87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEA  164 (170)
Q Consensus        87 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  164 (170)
                      .+++.+|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+  ....++..+..+     ...+++++
T Consensus        94 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~  168 (196)
T 2atv_A           94 GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT-----ELACAFYE  168 (196)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSEEEE
T ss_pred             hhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHH-----HhCCeEEE
Confidence            89999999999999999999999988888887654446889999999999976  455666666665     34578999


Q ss_pred             eeccCC
Q 030848          165 VSGYDG  170 (170)
Q Consensus       165 ~Sa~~g  170 (170)
                      +||++|
T Consensus       169 ~Sa~~g  174 (196)
T 2atv_A          169 CSACTG  174 (196)
T ss_dssp             CCTTTC
T ss_pred             ECCCcC
Confidence            999986

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=2.1e-27  Score=165.46  Aligned_cols=145  Identities=23%  Similarity=0.389  Sum_probs=115.5

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe--cCeEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      .+.++|+++|++|+|||||++++.+      ........++.+....  .+..  ....+.+|||||++.+...+..+++
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   86 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTD------DTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYR   86 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHH------SCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHc------CCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhc
Confidence            3568999999999999999999987      3333344455554432  2333  3467999999999999999999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      .+|++|+|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+ ....++..+.++     ...++++++||++
T Consensus        87 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~  161 (195)
T 1x3s_A           87 GAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR-----KHSMLFIEASAKT  161 (195)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH-----HTTCEEEECCTTT
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHH-----HcCCEEEEecCCC
Confidence            9999999999999999999999988887765556899999999999965 345566666665     3456899999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       162 ~  162 (195)
T 1x3s_A          162 C  162 (195)
T ss_dssp             C
T ss_pred             C
Confidence            6

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.95  E-value=3e-27  Score=162.41  Aligned_cols=145  Identities=25%  Similarity=0.382  Sum_probs=113.5

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEEEe--cCeEEEEEEcCCCCcchhhHHHHh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEV--SNSKLVFWDLGGQPGLRSIWEKYY   89 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~   89 (170)
                      ....++|+++|++|+|||||++++.+      +.......++.+...  ..+..  ....+.+|||||++.+...+..++
T Consensus        12 ~~~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   85 (179)
T 1z0f_A           12 YSYIFKYIIIGDMGVGKSCLLHQFTE------KKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYY   85 (179)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHH------SCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHh
Confidence            34679999999999999999999987      222333344444332  23333  346799999999999999999999


Q ss_pred             hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeec
Q 030848           90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSG  167 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  167 (170)
                      +.+|++++|+|++++.+++....|+..+..... .+.|+++++||+|+.+  ....++..+.++     ...++++++||
T Consensus        86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa  159 (179)
T 1z0f_A           86 RGAAGALMVYDITRRSTYNHLSSWLTDARNLTN-PNTVIILIGNKADLEAQRDVTYEEAKQFAE-----ENGLLFLEASA  159 (179)
T ss_dssp             HTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCT
T ss_pred             ccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeC
Confidence            999999999999999999988888887765432 5789999999999975  445666766665     34568999999


Q ss_pred             cCC
Q 030848          168 YDG  170 (170)
Q Consensus       168 ~~g  170 (170)
                      ++|
T Consensus       160 ~~~  162 (179)
T 1z0f_A          160 KTG  162 (179)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            986

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.95  E-value=1e-27  Score=170.16  Aligned_cols=144  Identities=22%  Similarity=0.343  Sum_probs=113.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHhh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ....+||+++|++|+|||||++++.+      +.....+.+|++....   .++.....+.+|||+|++.+...+..+++
T Consensus        24 ~~~~~ki~vvG~~~vGKSsL~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   97 (214)
T 3q3j_B           24 VVARCKLVLVGDVQCGKTAMLQVLAK------DCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYS   97 (214)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHH------SCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred             ccceEEEEEECcCCCCHHHHHHHHhc------CCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcC
Confidence            34679999999999999999999987      4444555566666543   22334568999999999999999999999


Q ss_pred             ccCEEEEEEeCCCcccHHH-HHHHHHHHHcCCCCCCCcEEEEeeCCCccc--------------cCCHHHHHhHhCcccc
Q 030848           91 EAHAVVFVIDAACPSRFED-SKTALEKVLRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKL  155 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--------------~~~~~~~~~~~~~~~~  155 (170)
                      .+|++|+|||++++.+++. ...|+..+....  ++.|+++|+||+|+.+              ....++..+.++    
T Consensus        98 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----  171 (214)
T 3q3j_B           98 DSDAVLLCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAK----  171 (214)
T ss_dssp             TCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH----
T ss_pred             CCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHH----
Confidence            9999999999999999988 577777776543  5899999999999975              356666666666    


Q ss_pred             cccee-EEEeeeccCC
Q 030848          156 DERVC-MFEAVSGYDG  170 (170)
Q Consensus       156 ~~~~~-~~~~~Sa~~g  170 (170)
                       ...+ +|++|||++|
T Consensus       172 -~~~~~~~~e~SA~~g  186 (214)
T 3q3j_B          172 -QLGAEIYLEGSAFTS  186 (214)
T ss_dssp             -HHTCSEEEECCTTTC
T ss_pred             -HcCCCEEEEeccCCC
Confidence             4455 8999999986

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.95  E-value=1.1e-27  Score=164.58  Aligned_cols=146  Identities=24%  Similarity=0.356  Sum_probs=112.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee--EEEEEecC---eEEEEEEcCCCCcchhhHHHH
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN---SKLVFWDLGGQPGLRSIWEKY   88 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~i~D~~G~~~~~~~~~~~   88 (170)
                      ..+.++|+++|++|+|||||++++.+      +.....+.++++..  ...+...+   ..+.+|||||++.+...+..+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~   76 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQ------ETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKY   76 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHG------GGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHH
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHh------CcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHH
Confidence            45679999999999999999999986      22223444555533  33455544   789999999999999999999


Q ss_pred             hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEe
Q 030848           89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEA  164 (170)
Q Consensus        89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  164 (170)
                      ++.+|++++|+|++++.+++.+..|+..+.....  ....|+++++||+|+.+  ....++..+.++     ...+++++
T Consensus        77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~  151 (178)
T 2hxs_A           77 IYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ-----ENGFSSHF  151 (178)
T ss_dssp             HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEE
T ss_pred             HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHH-----HcCCcEEE
Confidence            9999999999999999999888888777755321  12344899999999976  345566666655     34568999


Q ss_pred             eeccCC
Q 030848          165 VSGYDG  170 (170)
Q Consensus       165 ~Sa~~g  170 (170)
                      +||++|
T Consensus       152 ~Sa~~~  157 (178)
T 2hxs_A          152 VSAKTG  157 (178)
T ss_dssp             ECTTTC
T ss_pred             EeCCCC
Confidence            999986

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.95  E-value=5.5e-27  Score=163.57  Aligned_cols=144  Identities=26%  Similarity=0.435  Sum_probs=113.6

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ...+||+++|++|+|||||++++.+      +.......++.+....  .+...+  ..+.+|||||++.+...+..+++
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   87 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFAD------DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYR   87 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHH------SCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHT
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHh
Confidence            4568999999999999999999987      3333444455554433  344444  67999999999999999999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+|++|+|+|++++.+++.+..|+..+..... .+.|+++++||+|+.+.  ....+..+...     ...++++++||+
T Consensus        88 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~  161 (196)
T 3tkl_A           88 GAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVVDYTTAKEFAD-----SLGIPFLETSAK  161 (196)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCCEEEECTT
T ss_pred             hCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCcEEEEeCC
Confidence            99999999999999999999888888765433 57899999999999763  44455555555     344689999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       162 ~g  163 (196)
T 3tkl_A          162 NA  163 (196)
T ss_dssp             TC
T ss_pred             CC
Confidence            86

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.95  E-value=1.5e-27  Score=162.32  Aligned_cols=143  Identities=24%  Similarity=0.408  Sum_probs=112.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEec--CeEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ...+||+++|++|+|||||++++.+      +.....+.++.+....  .+...  ...+.+|||||++.+...+..+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   76 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCK------GIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYR   76 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHH------CCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHT
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhc
Confidence            4579999999999999999999987      3333344455443332  33333  458999999999998888889999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+|++++|+|++++.+++....|+..+....  .+.|+++++||+|+.+  ....++..+.++     ...++++++||+
T Consensus        77 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~  149 (168)
T 1z2a_A           77 GAQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAK-----RLKLRFYRTSVK  149 (168)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEECBTT
T ss_pred             CCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHH-----HcCCeEEEEecC
Confidence            9999999999999999998888888876543  5789999999999976  445666666655     345689999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       150 ~~  151 (168)
T 1z2a_A          150 ED  151 (168)
T ss_dssp             TT
T ss_pred             CC
Confidence            86

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.95  E-value=5.8e-27  Score=162.22  Aligned_cols=144  Identities=27%  Similarity=0.397  Sum_probs=113.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ...+||+++|++|+|||||++++.+      ........++.+...  ..+...+  ..+.+|||||++.+...+..+++
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   81 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIE------KKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYR   81 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHH------SSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTST
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHh
Confidence            4569999999999999999999987      333334445555433  2344444  68999999999999999999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+|++|+|+|++++.+++.+..|+..+..... .+.|+++++||+|+.+  .....+..+.++     ...++++++||+
T Consensus        82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~  155 (186)
T 2bme_A           82 GAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDADREVTFLEASRFAQ-----ENELMFLETSAL  155 (186)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTT
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEecCC
Confidence            99999999999999999988888877765433 6789999999999975  455566666665     445789999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       156 ~~  157 (186)
T 2bme_A          156 TG  157 (186)
T ss_dssp             TC
T ss_pred             CC
Confidence            86

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.95  E-value=1.8e-27  Score=162.34  Aligned_cols=145  Identities=19%  Similarity=0.261  Sum_probs=103.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec--CeEEEEEEcCCCCcchh-hHHHHhhccC
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS--NSKLVFWDLGGQPGLRS-IWEKYYEEAH   93 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~-~~~~~~~~~~   93 (170)
                      .+||+++|++|+|||||++++.+......    .....+.......+...  ...+.+||+||++.+.. .+..+++.+|
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d   77 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHA----HEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGD   77 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC----------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCS
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCccc----ccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCC
Confidence            57999999999999999999975211111    11112222223333343  46788999999988765 6677789999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++++|+|++++.+++....|+..+.......+.|+++++||+|+.+  ....++..+..+     ...++++++||++|
T Consensus        78 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  151 (169)
T 3q85_A           78 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG-----TLSCKHIETSAALH  151 (169)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECBTTTT
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHH-----HcCCcEEEecCccC
Confidence            9999999999999999999999988766556899999999999974  556667666666     44568999999986

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.95  E-value=5.6e-27  Score=159.79  Aligned_cols=144  Identities=23%  Similarity=0.358  Sum_probs=112.5

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEec--CeEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      .+.++|+++|++|+|||||++++.+      ........++.+....  .+...  ...+.+|||||.+.+...+..+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~   77 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVE------DSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYR   77 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHH------SCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHT
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCc
Confidence            4579999999999999999999987      3333344455554432  23333  467999999999999998999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+|++++|+|++++.+++....|+..+... ..+..|+++++||+|+.+  ....++..+..+     ...++++++||+
T Consensus        78 ~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~  151 (170)
T 1z0j_A           78 GSAAAIIVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYAD-----SIHAIFVETSAK  151 (170)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECBTT
T ss_pred             CCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHHH-----HcCCEEEEEeCC
Confidence            999999999999999999888888777653 236789999999999976  344555555554     345689999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       152 ~~  153 (170)
T 1z0j_A          152 NA  153 (170)
T ss_dssp             TT
T ss_pred             CC
Confidence            86

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.95  E-value=9.6e-27  Score=162.93  Aligned_cols=143  Identities=22%  Similarity=0.394  Sum_probs=113.2

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEecC------------------------
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN------------------------   67 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------------------------   67 (170)
                      .+..++|+++|++|+|||||++++.+      ......+.++++....  .+...+                        
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTK------DTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNV   77 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHH------SCCCSSCCCCCSCEEEEEEEETTC------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHh------CcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccc
Confidence            45679999999999999999999987      2233344455554433  223222                        


Q ss_pred             ---------------eEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 030848           68 ---------------SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA  132 (170)
Q Consensus        68 ---------------~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~  132 (170)
                                     ..+.+|||||++.+...+..+++.+|++|+|+|++++.+++....|+..+....   ..|+++|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~  154 (208)
T 3clv_A           78 IITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVA  154 (208)
T ss_dssp             -------CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEE
T ss_pred             ccccccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEE
Confidence                           789999999999999999999999999999999999999999888888886643   38999999


Q ss_pred             eCCCccc-cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848          133 NKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       133 nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ||+|+.. ....+++.+.++     ...++++++||++|
T Consensus       155 NK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  188 (208)
T 3clv_A          155 NKIDKNKFQVDILEVQKYAQ-----DNNLLFIQTSAKTG  188 (208)
T ss_dssp             ECTTCC-CCSCHHHHHHHHH-----HTTCEEEEECTTTC
T ss_pred             ECCCcccccCCHHHHHHHHH-----HcCCcEEEEecCCC
Confidence            9999433 556777777776     45569999999986

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.95  E-value=1.3e-27  Score=166.78  Aligned_cols=151  Identities=19%  Similarity=0.227  Sum_probs=112.4

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC----CCcccCCcceeEEE-----EEecCeEEEEEEcCCCCcchh
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP----PDRIVPTVGLNIGR-----IEVSNSKLVFWDLGGQPGLRS   83 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~-----~~~~~~~~~i~D~~G~~~~~~   83 (170)
                      .....+||+++|++|+|||||++.+.+.........    .....+|.+.....     ++.....+.+|||||++.+..
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~   89 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA   89 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence            345789999999999999999988765322111100    01123444444332     222346799999999999999


Q ss_pred             hHHHHhhccCEEEEEEeCC------CcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccccc
Q 030848           84 IWEKYYEEAHAVVFVIDAA------CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDE  157 (170)
Q Consensus        84 ~~~~~~~~~~~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~  157 (170)
                      .+..+++.+|++|+|+|++      +..+++.+..|+..+.  ....+.|+++|+||+|+.+....+++.+.++     .
T Consensus        90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~-----~  162 (198)
T 3t1o_A           90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVD-----P  162 (198)
T ss_dssp             HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHC-----T
T ss_pred             HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHH-----h
Confidence            9999999999999999999      4456666666666652  2336899999999999999888999998888     4


Q ss_pred             cee-EEEeeeccCC
Q 030848          158 RVC-MFEAVSGYDG  170 (170)
Q Consensus       158 ~~~-~~~~~Sa~~g  170 (170)
                      ..+ +++++||++|
T Consensus       163 ~~~~~~~~~Sa~~~  176 (198)
T 3t1o_A          163 EGKFPVLEAVATEG  176 (198)
T ss_dssp             TCCSCEEECBGGGT
T ss_pred             cCCceEEEEecCCC
Confidence            455 8999999986

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.95  E-value=1e-26  Score=162.16  Aligned_cols=144  Identities=22%  Similarity=0.372  Sum_probs=113.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe--cCeEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ...++|+++|++|+|||||++++.+      ........++.+....  .+..  ....+.+|||||++.+...+..+++
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   96 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTR------NEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYR   96 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHH------SCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHT
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhc
Confidence            4568999999999999999999987      2333334455554433  2222  4567999999999999999999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+|++|+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+  ....++..+.+.     ...++++++||+
T Consensus        97 ~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~  170 (193)
T 2oil_A           97 GAVGALLVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFAE-----NNGLLFLETSAL  170 (193)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEECTT
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHHH-----HcCCEEEEEeCC
Confidence            9999999999999999988888888886643 36789999999999976  345566666655     345689999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       171 ~~  172 (193)
T 2oil_A          171 DS  172 (193)
T ss_dssp             TC
T ss_pred             CC
Confidence            86

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.95  E-value=2.4e-27  Score=166.32  Aligned_cols=147  Identities=22%  Similarity=0.429  Sum_probs=103.8

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEEEe--cCeEEEEEEcCCCCcchhhHHH
Q 030848           12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEV--SNSKLVFWDLGGQPGLRSIWEK   87 (170)
Q Consensus        12 ~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~   87 (170)
                      ...+..+||+++|++|+|||||++++.+      +.......++.+...  ..+..  ....+.+|||||++.+...+..
T Consensus        23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~   96 (199)
T 2p5s_A           23 FSSQKAYKIVLAGDAAVGKSSFLMRLCK------NEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKS   96 (199)
T ss_dssp             -----CEEEEEESSTTSSHHHHHHHHHH------CCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHH
T ss_pred             cCcCCCeEEEEECcCCCCHHHHHHHHHh------CCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHH
Confidence            3445679999999999999999999987      222233344444332  23333  3467999999999999999999


Q ss_pred             HhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--------cCCHHHHHhHhCccccccce
Q 030848           88 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--------AVSADELARYLDLKKLDERV  159 (170)
Q Consensus        88 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~  159 (170)
                      +++.+|++|+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+        ....++..+.+.     ...
T Consensus        97 ~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~-----~~~  170 (199)
T 2p5s_A           97 YFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAA-HETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAM-----TYG  170 (199)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC----CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHH-----HHT
T ss_pred             HHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccccccccCHHHHHHHHH-----HcC
Confidence            9999999999999999999998888877775432 25789999999999962        334455555554     345


Q ss_pred             eEEEeeeccCC
Q 030848          160 CMFEAVSGYDG  170 (170)
Q Consensus       160 ~~~~~~Sa~~g  170 (170)
                      ++++++||++|
T Consensus       171 ~~~~~~SA~~g  181 (199)
T 2p5s_A          171 ALFCETSAKDG  181 (199)
T ss_dssp             CEEEECCTTTC
T ss_pred             CeEEEeeCCCC
Confidence            68999999986

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.95  E-value=5e-27  Score=160.84  Aligned_cols=146  Identities=21%  Similarity=0.201  Sum_probs=100.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec--CeEEEEEEcCCCCc--chhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS--NSKLVFWDLGGQPG--LRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~--~~~~~~~~~~   90 (170)
                      .+.+||+++|++|+|||||++++.+...  ..... .  +........+...  ...+.+|||||++.  +......+++
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~--~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   76 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQE--RDLHE-Q--LGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQ   76 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-------CC-C--SSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTT
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCC--ccccC-c--cccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcc
Confidence            4679999999999999999999976211  11111 1  1111122233343  35789999999887  4556677889


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+|++++|+|++++.+++....|+..+.......+.|+++|+||+|+.+  ....++..+...     ...++++++||+
T Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~  151 (175)
T 2nzj_A           77 GGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAV-----VFDCKFIETSAT  151 (175)
T ss_dssp             SCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-----HHTSEEEECBTT
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHH-----HcCCeEEEEecC
Confidence            9999999999999999999999888887664446899999999999976  345555555544     345689999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       152 ~g  153 (175)
T 2nzj_A          152 LQ  153 (175)
T ss_dssp             TT
T ss_pred             CC
Confidence            86

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=2.6e-27  Score=166.68  Aligned_cols=144  Identities=25%  Similarity=0.451  Sum_probs=113.5

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ...+||+++|++|+|||||++++.+      +.......++++....  .+...+  ..+.+|||||++.+...+..+++
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~   97 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQ------GLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYR   97 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHH------SSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGST
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHh------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHh
Confidence            3568999999999999999999987      3333444556554433  344443  57999999999999998999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+|++|+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+  ....++..+..+     ...++++++||+
T Consensus        98 ~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~  171 (201)
T 2ew1_A           98 SANALILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSE-----AQDMYYLETSAK  171 (201)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCCEEECCTT
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCEEEEEeCC
Confidence            9999999999999999998888888776543 25789999999999975  445566665554     345689999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       172 ~g  173 (201)
T 2ew1_A          172 ES  173 (201)
T ss_dssp             TC
T ss_pred             CC
Confidence            86

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.95  E-value=1.4e-26  Score=162.54  Aligned_cols=144  Identities=26%  Similarity=0.367  Sum_probs=112.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe--cCeEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ...+||+++|++|+|||||++++.+      ......+.++.+....  .+..  ....+.+|||||++.+...+..+++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   79 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYAD------DSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYR   79 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHT------CCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGG
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhc------CCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhc
Confidence            3568999999999999999999987      3333344455554433  2333  3468999999999999999999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+|++|+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+  ....++..+..+     ...++++++||+
T Consensus        80 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~  153 (203)
T 1zbd_A           80 GAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLAD-----HLGFEFFEASAK  153 (203)
T ss_dssp             GCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHH-----HHTCEEEECBTT
T ss_pred             CCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHH-----HCCCeEEEEECC
Confidence            9999999999999999998888888876543 35789999999999976  345556666555     334689999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       154 ~~  155 (203)
T 1zbd_A          154 DN  155 (203)
T ss_dssp             TT
T ss_pred             CC
Confidence            86

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.95  E-value=8.9e-27  Score=160.02  Aligned_cols=144  Identities=25%  Similarity=0.435  Sum_probs=113.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      .+.++|+++|++|+|||||++++.+      +.......++.+...  ..+...+  ..+.+|||||++.+...+..+++
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~   85 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMY------DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   85 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhc
Confidence            4569999999999999999999986      333334445555433  2333443  57999999999999999999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+|++++|+|++++.+++....|+..+..... .+.|+++|+||+|+.+  ....++..+.+.     ...++++++||+
T Consensus        86 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~  159 (179)
T 2y8e_A           86 DSTVAVVVYDITNTNSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQVSTEEGERKAK-----ELNVMFIETSAK  159 (179)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEEEBTT
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCcccccCcCCHHHHHHHHH-----HcCCeEEEEeCC
Confidence            99999999999999999988888888765432 5789999999999975  344566666555     445789999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       160 ~~  161 (179)
T 2y8e_A          160 AG  161 (179)
T ss_dssp             TT
T ss_pred             CC
Confidence            86

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.95  E-value=1.5e-27  Score=162.73  Aligned_cols=144  Identities=23%  Similarity=0.346  Sum_probs=106.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe--cCeEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ...+||+++|++|+|||||++++.+      +.......++.+....  .+..  ....+.+|||||++.+...+..+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   77 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCE------NKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYR   77 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHH------CCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSST
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHc------CCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhc
Confidence            4679999999999999999999987      3333344455554433  3333  3457999999999998888888899


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+|++++|+|++++.+++....|+..+.... ..+.|+++++||+|+.+  ....++..+.++     ...++++++||+
T Consensus        78 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~  151 (170)
T 1z08_A           78 DSNGAILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAE-----SVGAKHYHTSAK  151 (170)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEEBTT
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHH-----HcCCeEEEecCC
Confidence            9999999999999999999888887765432 25789999999999976  455666666665     345689999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       152 ~~  153 (170)
T 1z08_A          152 QN  153 (170)
T ss_dssp             TT
T ss_pred             CC
Confidence            86

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.95  E-value=9.6e-27  Score=157.69  Aligned_cols=144  Identities=20%  Similarity=0.305  Sum_probs=111.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEe--cCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      +.++|+++|++|+|||||++++.+      +.......++...... .+..  ....+.+||+||++.+...+..+++.+
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~   75 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQ------NHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG   75 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHH------SSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHC
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHh------CcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccC
Confidence            468999999999999999999987      2222333344433322 2333  345689999999999998899999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      |++++|+|++++.+++....|+..+.......+.|+++++||+|+.+ ....++..+..+     ...++++++||++|
T Consensus        76 ~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  149 (166)
T 2ce2_X           76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR-----SYGIPYIETSAKTR  149 (166)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-----HHTCCEEEECTTTC
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH-----HcCCeEEEecCCCC
Confidence            99999999999999998888888877654445799999999999976 445556665555     34468999999986

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.95  E-value=2.7e-27  Score=165.24  Aligned_cols=144  Identities=21%  Similarity=0.321  Sum_probs=111.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE-EEe--cCeEEEEEEcCCCCcchhhHHHHhh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IEV--SNSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      .+..+||+++|++|+|||||++++.+      +.....+.++.+..... +..  ....+.+|||||++.+...+..+++
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   93 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSK------GEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYA   93 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHH------SCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhc------CCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhcc
Confidence            45679999999999999999999987      33444555666555442 223  3456799999999999999999999


Q ss_pred             ccCEEEEEEeCCCcccHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCccc----cCCHHHHHhHhCccccccceeE-EEe
Q 030848           91 EAHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPD----AVSADELARYLDLKKLDERVCM-FEA  164 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~v~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~  164 (170)
                      .+|++++|+|++++.+++.+ ..|...+...  .++.|+++|+||+|+.+    ....++..+.++     ...++ +++
T Consensus        94 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  166 (194)
T 3reg_A           94 DSDVVLLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQ-----KLGCVAYIE  166 (194)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHH-----HHTCSCEEE
T ss_pred             CCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHH-----hcCCCEEEE
Confidence            99999999999999999887 4555555433  25789999999999974    355666666666     33344 999


Q ss_pred             eeccCC
Q 030848          165 VSGYDG  170 (170)
Q Consensus       165 ~Sa~~g  170 (170)
                      +||++|
T Consensus       167 ~Sa~~~  172 (194)
T 3reg_A          167 ASSVAK  172 (194)
T ss_dssp             CBTTTT
T ss_pred             eecCCC
Confidence            999986

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.95  E-value=9.3e-28  Score=165.91  Aligned_cols=144  Identities=24%  Similarity=0.397  Sum_probs=89.6

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ...++|+++|++|+|||||++++.+      +.......++++....  .+...+  ..+.+|||||++.+...+..+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   79 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSE------DAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR   79 (183)
T ss_dssp             SEEEEEEEECCCCC----------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHh
Confidence            4578999999999999999999976      3333445566654433  344444  78999999999998888888899


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+|++|+|+|++++.+++.+..|+..+..... ++.|+++|+||+|+.+  ....++..+.++     ...++++++||+
T Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~  153 (183)
T 2fu5_C           80 GAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEKMILGNKCDVNDKRQVSKERGEKLAL-----DYGIKFMETSAK  153 (183)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEEC--CCSCCCSCHHHHHHHHH-----HHTCEEEECCC-
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECccCCccCcCCHHHHHHHHH-----HcCCeEEEEeCC
Confidence            99999999999999999999888888765432 5789999999999976  345666666665     345689999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       154 ~~  155 (183)
T 2fu5_C          154 AN  155 (183)
T ss_dssp             --
T ss_pred             CC
Confidence            86

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.95  E-value=2.6e-27  Score=168.07  Aligned_cols=145  Identities=23%  Similarity=0.402  Sum_probs=114.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEec------------CeEEEEEEcCCCCc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS------------NSKLVFWDLGGQPG   80 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------------~~~~~i~D~~G~~~   80 (170)
                      ...+||+++|++|+|||||++++.+      ......+.++.+....  .+...            ...+.+|||||++.
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~   96 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTD------NKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER   96 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHC------SCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHH
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhc------CCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHh
Confidence            4568999999999999999999986      3334455566555433  22222            56799999999999


Q ss_pred             chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccc
Q 030848           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDER  158 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~  158 (170)
                      +...+..+++.+|++|+|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+  ....++..+.++     ..
T Consensus        97 ~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~-----~~  171 (217)
T 2f7s_A           97 FRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD-----KY  171 (217)
T ss_dssp             HHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HT
T ss_pred             HHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHH-----HC
Confidence            99999999999999999999999999998888887776554446799999999999976  345566666665     33


Q ss_pred             eeEEEeeeccCC
Q 030848          159 VCMFEAVSGYDG  170 (170)
Q Consensus       159 ~~~~~~~Sa~~g  170 (170)
                      .++++++||++|
T Consensus       172 ~~~~~~~Sa~~g  183 (217)
T 2f7s_A          172 GIPYFETSAATG  183 (217)
T ss_dssp             TCCEEEEBTTTT
T ss_pred             CCcEEEEECCCC
Confidence            467999999986

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.95  E-value=3e-27  Score=164.38  Aligned_cols=146  Identities=25%  Similarity=0.263  Sum_probs=109.0

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEE--ecCeEEEEEEcCCCCcchhhHHHHh
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIE--VSNSKLVFWDLGGQPGLRSIWEKYY   89 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~i~D~~G~~~~~~~~~~~~   89 (170)
                      .....+||+++|++|+|||||++++.+      +.....+.+|++..+. ...  .....+.+|||||++.+... ..++
T Consensus        17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~   89 (187)
T 3c5c_A           17 QGPLEVNLAILGRRGAGKSALTVKFLT------KRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYL   89 (187)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHH------SSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHH
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHh------CCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHH
Confidence            346779999999999999999999987      3333455566655432 222  33467899999999887764 5688


Q ss_pred             hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEee
Q 030848           90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAV  165 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (170)
                      +.+|++++|||++++.+++.+..|+..+.....  ..+.|+++++||+|+.+  ....++..+.++     ...++++++
T Consensus        90 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~  164 (187)
T 3c5c_A           90 NWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAG-----RFGCLFFEV  164 (187)
T ss_dssp             TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEEC
T ss_pred             hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHH-----HcCCcEEEE
Confidence            999999999999999999999988888865421  15789999999999975  456667777666     445689999


Q ss_pred             ec-cCC
Q 030848          166 SG-YDG  170 (170)
Q Consensus       166 Sa-~~g  170 (170)
                      || ++|
T Consensus       165 Sa~~~g  170 (187)
T 3c5c_A          165 SACLDF  170 (187)
T ss_dssp             CSSSCS
T ss_pred             eecCcc
Confidence            99 775

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.95  E-value=3.6e-27  Score=164.33  Aligned_cols=144  Identities=24%  Similarity=0.367  Sum_probs=110.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee--EEEEEec--CeEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVS--NSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ...+||+++|++|+|||||++++.+      +.......++.+..  ...+...  ...+.+|||||++.+...+..+++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   92 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTD------KRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYR   92 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHH------SCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHT
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhc
Confidence            4568999999999999999999987      22223333444433  2234443  368999999999999888889999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+|++|+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+  ....++..+.++     ...++++++||+
T Consensus        93 ~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~  166 (191)
T 2a5j_A           93 GAAGALLVYDITRRETFNHLTSWLEDARQHSS-SNMVIMLIGNKSDLESRRDVKREEGEAFAR-----EHGLIFMETSAK  166 (191)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEECTT
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECcccCCccccCHHHHHHHHH-----HcCCEEEEEeCC
Confidence            99999999999999999998888888865432 5789999999999975  455666666665     445689999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       167 ~~  168 (191)
T 2a5j_A          167 TA  168 (191)
T ss_dssp             TC
T ss_pred             CC
Confidence            86

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.6e-27  Score=166.13  Aligned_cols=144  Identities=22%  Similarity=0.346  Sum_probs=113.0

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--E--EEecCeEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--R--IEVSNSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ...+||+++|++|+|||||++++.+      +.......++.+....  .  .+.....+.+|||||++.+...+..+++
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   94 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYAD------DTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYR   94 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHH------HTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHT
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhc------CCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHc
Confidence            3568999999999999999999987      2223333344433322  2  2335678999999999999999999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+|++|+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+  ....++..+..+     ...++++++||+
T Consensus        95 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~  168 (191)
T 3dz8_A           95 GAMGFILMYDITNEESFNAVQDWATQIKTYS-WDNAQVILVGNKCDMEEERVVPTEKGQLLAE-----QLGFDFFEASAK  168 (191)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEECBTT
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCeEEEEECC
Confidence            9999999999999999999888888876643 36789999999999975  355566666655     445689999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       169 ~~  170 (191)
T 3dz8_A          169 EN  170 (191)
T ss_dssp             TT
T ss_pred             CC
Confidence            86

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.95  E-value=5.5e-27  Score=164.21  Aligned_cols=148  Identities=20%  Similarity=0.258  Sum_probs=108.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe--cCeEEEEEEcCCCCcchh-hHHHHhh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV--SNSKLVFWDLGGQPGLRS-IWEKYYE   90 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~G~~~~~~-~~~~~~~   90 (170)
                      ....++|+++|++|+|||||++++.+...... ..+   ..+.......+..  ....+.+|||+|++.+.. ++..+++
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~   95 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSA-HEP---ENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQ   95 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCCEECCGG-GTT---TSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHH
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHhccCCcc-CCC---CcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhc
Confidence            34679999999999999999999964211111 001   1111222222333  346789999999988765 7778889


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+|++|+|||++++.+++.+..|+..+.......+.|+++|+||+|+.+  ....++..+.++     ...++++++||+
T Consensus        96 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~-----~~~~~~~e~Sa~  170 (195)
T 3cbq_A           96 TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG-----TLSCKHIETSAA  170 (195)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCEEEEEBTT
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHH-----HhCCEEEEEcCC
Confidence            9999999999999999999999998887654445799999999999975  355666666655     334689999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       171 ~~  172 (195)
T 3cbq_A          171 LH  172 (195)
T ss_dssp             TT
T ss_pred             CC
Confidence            86

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.95  E-value=3.2e-27  Score=160.98  Aligned_cols=143  Identities=25%  Similarity=0.423  Sum_probs=107.6

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEEEec--CeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVS--NSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      ..+||+++|++|+|||||++++.+      +.......++.+...  ..+...  ...+.+||+||++.+...+..+++.
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~   75 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVE------DKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRG   75 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHH------CCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTT
T ss_pred             CceEEEEECcCCCCHHHHHHHHHh------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhcc
Confidence            468999999999999999999987      333334444544333  233333  3579999999999988888889999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +|++++|+|++++.+++.+..|+..+..... .+.|+++++||+|+.+ ....++..+..+     ...++++++||++|
T Consensus        76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  149 (170)
T 1g16_A           76 AMGIILVYDITDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPFIESSAKND  149 (170)
T ss_dssp             EEEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCTTCCSCHHHHHHHHH-----HHTCCEEECBTTTT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECccCCcCccCHHHHHHHHH-----HcCCeEEEEECCCC
Confidence            9999999999999999888888887766432 5789999999999965 345555555554     33468999999986

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.95  E-value=4.9e-27  Score=161.60  Aligned_cols=143  Identities=24%  Similarity=0.447  Sum_probs=112.0

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ...+||+++|++|+|||||++++.+      +.......++.+...  ..+...+  ..+.+|||||++.+...+..+++
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   80 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFAD------NTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYR   80 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCS------CC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGT
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc------CCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhc
Confidence            4679999999999999999999976      333334444554433  3444555  67999999999998888888999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+|++++|+|++++.+++.+..|+..+....  ++.|+++|+||+|+.+  .....+..+...     ...++++++||+
T Consensus        81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~  153 (181)
T 3tw8_B           81 GTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAG-----QMGIQLFETSAK  153 (181)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCCEEECBTT
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHHH-----HcCCeEEEEECC
Confidence            9999999999999999999988888886643  5789999999999976  345556665555     345689999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       154 ~~  155 (181)
T 3tw8_B          154 EN  155 (181)
T ss_dssp             TT
T ss_pred             CC
Confidence            86

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=5.9e-27  Score=161.28  Aligned_cols=145  Identities=27%  Similarity=0.468  Sum_probs=105.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC-CCcccCCcceeEEE--EEec--CeEEEEEEcCCCCcchhhHHHH
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP-PDRIVPTVGLNIGR--IEVS--NSKLVFWDLGGQPGLRSIWEKY   88 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~   88 (170)
                      ....++|+++|++|+|||||++++.+.      .. .....++++.....  +...  ...+.+|||||++.+...+..+
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~   80 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDG------AFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAY   80 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHS------CCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CC
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhC------CCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHH
Confidence            456799999999999999999999872      22 12344555555432  2333  3579999999999999888899


Q ss_pred             hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeee
Q 030848           89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVS  166 (170)
Q Consensus        89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S  166 (170)
                      ++.+|++++|+|++++.+++.+..|+..+..... .+.|+++++||+|+.+  ....++..+..+     ...++++++|
T Consensus        81 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~S  154 (180)
T 2g6b_A           81 YRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAK-----EYGLPFMETS  154 (180)
T ss_dssp             GGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHH-----HHTCCEEECC
T ss_pred             ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHHH-----HcCCeEEEEe
Confidence            9999999999999999999988888888766433 6789999999999975  335556655555     3446899999


Q ss_pred             ccCC
Q 030848          167 GYDG  170 (170)
Q Consensus       167 a~~g  170 (170)
                      |++|
T Consensus       155 a~~~  158 (180)
T 2g6b_A          155 AKTG  158 (180)
T ss_dssp             TTTC
T ss_pred             CCCC
Confidence            9986

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.95  E-value=1.1e-26  Score=161.47  Aligned_cols=144  Identities=26%  Similarity=0.383  Sum_probs=111.6

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe--cCeEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ...+||+++|++|+|||||++++.+      +.......++.+....  .+..  ....+.+|||||++.+...+..+++
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   93 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYAD------DSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYR   93 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHH------SCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGT
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHc------CCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhcc
Confidence            3468999999999999999999987      2333334445444432  2332  3468999999999999888888999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+|++|+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+  ....++..+..+     ...++++++||+
T Consensus        94 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~  167 (189)
T 2gf9_A           94 GAMGFLLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLAD-----DLGFEFFEASAK  167 (189)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEECBTT
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHH-----HcCCeEEEEECC
Confidence            9999999999999999998888888776543 35789999999999976  344556666555     334689999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       168 ~g  169 (189)
T 2gf9_A          168 EN  169 (189)
T ss_dssp             TT
T ss_pred             CC
Confidence            86

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.95  E-value=1.6e-26  Score=158.70  Aligned_cols=147  Identities=21%  Similarity=0.387  Sum_probs=112.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEecC--eEEEEEEcCCCCcchhhHHHHh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYY   89 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~   89 (170)
                      ....++|+++|++|+|||||++++.+      +.......++.+....  .+...+  ..+.+|||||++.+...+..++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   77 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVT------NKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFY   77 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHH------SCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGG
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHH
Confidence            34678999999999999999999987      3333445556655433  333444  5899999999999999999999


Q ss_pred             hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC---CCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEee
Q 030848           90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNED---LQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAV  165 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (170)
                      +.+|++++|+|++++.+++.+..|+..+.....   ..+.|+++++||+|+.+ ....++..+.++.    ...++++++
T Consensus        78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~  153 (177)
T 1wms_A           78 RGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD----NGDYPYFET  153 (177)
T ss_dssp             TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH----TTCCCEEEC
T ss_pred             hcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh----cCCceEEEE
Confidence            999999999999999999888888877754322   25789999999999974 4556666665541    235679999


Q ss_pred             eccCC
Q 030848          166 SGYDG  170 (170)
Q Consensus       166 Sa~~g  170 (170)
                      ||++|
T Consensus       154 Sa~~~  158 (177)
T 1wms_A          154 SAKDA  158 (177)
T ss_dssp             CTTTC
T ss_pred             eCCCC
Confidence            99986

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=9.8e-27  Score=158.75  Aligned_cols=144  Identities=21%  Similarity=0.329  Sum_probs=108.3

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE-EE--ecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      +.++|+++|++|+|||||++++.+      +.......++.+..... ..  .....+.+|||||++.+...+..+++.+
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   75 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVK------GTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKG   75 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHT------CCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccC
Confidence            468999999999999999999987      33333344444444332 22  2345799999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCC-CCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNE-DLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      |++++|+|++++.+++....++..+.... ..++.|+++++||+|+.+.  ....+..+...     ...++++++||++
T Consensus        76 ~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~  150 (172)
T 2erx_A           76 HAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALAR-----TWKCAFMETSAKL  150 (172)
T ss_dssp             SEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEECBTTT
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHH-----HhCCeEEEecCCC
Confidence            99999999999999988888877765432 2257899999999999753  44445555444     3456899999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       151 ~  151 (172)
T 2erx_A          151 N  151 (172)
T ss_dssp             T
T ss_pred             C
Confidence            6

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.95  E-value=3.3e-26  Score=157.46  Aligned_cols=142  Identities=17%  Similarity=0.249  Sum_probs=104.0

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEec--CeEEEEEEcCCCCcchhhHHHHh
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVS--NSKLVFWDLGGQPGLRSIWEKYY   89 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~   89 (170)
                      ...+.+||+++|++|+|||||++++.+      +.... +.+|++.... .+...  ...+.+|||||++.     ..++
T Consensus         3 ~~~~~~ki~~vG~~~vGKTsli~~l~~------~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~   70 (178)
T 2iwr_A            3 RSIPELRLGVLGDARSGKSSLIHRFLT------GSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFS   70 (178)
T ss_dssp             CCCCEEEEEEECCGGGCHHHHHHHHHH------SCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHh------CCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHH
Confidence            346789999999999999999999987      22222 3445444322 23333  36789999999887     4577


Q ss_pred             hccCEEEEEEeCCCcccHHHHHHHHHHHHcC--CCCCCCcEEEEeeCCCccc----cCCHHHHHhHhCccccccceeEEE
Q 030848           90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRN--EDLQGAPLLILANKQDLPD----AVSADELARYLDLKKLDERVCMFE  163 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~ii~v~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~  163 (170)
                      +.+|++|+|+|++++.+++.+..|+..+...  ...++.|+++++||+|+.+    ....++..+.++.    ...++++
T Consensus        71 ~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~  146 (178)
T 2iwr_A           71 GWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXAD----MKRCSYY  146 (178)
T ss_dssp             HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHH----HSSEEEE
T ss_pred             HhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHh----hcCCeEE
Confidence            8999999999999999999988865444322  2235789999999999942    4556666665541    1257899


Q ss_pred             eeeccCC
Q 030848          164 AVSGYDG  170 (170)
Q Consensus       164 ~~Sa~~g  170 (170)
                      ++||++|
T Consensus       147 ~~Sa~~~  153 (178)
T 2iwr_A          147 ETXATYG  153 (178)
T ss_dssp             EEBTTTT
T ss_pred             EEecccc
Confidence            9999986

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.95  E-value=8e-27  Score=164.28  Aligned_cols=144  Identities=27%  Similarity=0.452  Sum_probs=113.0

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEec--CeEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ...++|+++|++|+|||||++++.+      +.....+.++++....  .+...  ...+.+|||||++.+...+..+++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   79 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSD------DTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYR   79 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHH------CCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGT
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhcc
Confidence            4568999999999999999999987      3333344455554433  33343  358999999999999888888999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+|++|+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+  ....++..+...     ...++++++||+
T Consensus        80 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~  153 (206)
T 2bcg_Y           80 GSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD-----ANKMPFLETSAL  153 (206)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCCEEECCTT
T ss_pred             CCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCeEEEEeCC
Confidence            9999999999999999999988888776543 25789999999999976  345566666555     344689999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       154 ~g  155 (206)
T 2bcg_Y          154 DS  155 (206)
T ss_dssp             TC
T ss_pred             CC
Confidence            86

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.95  E-value=1.1e-26  Score=161.46  Aligned_cols=148  Identities=20%  Similarity=0.298  Sum_probs=102.6

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEec--CeEEEEEEcCCCCcchhhHHHH
Q 030848           12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVS--NSKLVFWDLGGQPGLRSIWEKY   88 (170)
Q Consensus        12 ~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~   88 (170)
                      ....+.++|+++|.+|+|||||++++.+      +.....+.++...... .+...  ...+.+||+||++.+...+..+
T Consensus        16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   89 (190)
T 3con_A           16 FQGMTEYKLVVVGAGGVGKSALTIQLIQ------NHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQY   89 (190)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHHHHHH------SSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------
T ss_pred             ccccceeEEEEECcCCCCHHHHHHHHHc------CCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHh
Confidence            3345779999999999999999999987      2222333344433322 23333  3569999999999998888999


Q ss_pred             hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEeeec
Q 030848           89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSG  167 (170)
Q Consensus        89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  167 (170)
                      ++.+|++++|+|++++.+++.+..|+..+.......+.|+++++||+|+.+ ....++..+.++     ...++++++||
T Consensus        90 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa  164 (190)
T 3con_A           90 MRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAK-----SYGIPFIETSA  164 (190)
T ss_dssp             CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-----HHTCCEEECCT
T ss_pred             hCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHH-----HcCCeEEEEeC
Confidence            999999999999999999998888888876654445789999999999976 445666666665     34468999999


Q ss_pred             cCC
Q 030848          168 YDG  170 (170)
Q Consensus       168 ~~g  170 (170)
                      ++|
T Consensus       165 ~~~  167 (190)
T 3con_A          165 KTR  167 (190)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            986

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.94  E-value=1.4e-26  Score=161.61  Aligned_cols=145  Identities=24%  Similarity=0.404  Sum_probs=108.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ...+||+++|.+|+|||||++++.+      +.......++.+...  ..+...+  ..+.+|||||++.+...+..+++
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~   97 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTD------DTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYR   97 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC--------------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhc------CCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhc
Confidence            4568999999999999999999976      222233344554433  3344433  57999999999999999999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+|++|+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+  ....++..+..+.    ...++++++||+
T Consensus        98 ~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~----~~~~~~~~~SA~  172 (192)
T 2il1_A           98 SAKGIILVYDITKKETFDDLPKWMKMIDKYA-SEDAELLLVGNKLDCETDREITRQQGEKFAQQ----ITGMRFCEASAK  172 (192)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT----STTCEEEECBTT
T ss_pred             CCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHh----cCCCeEEEEeCC
Confidence            9999999999999999998888877665432 35789999999999976  3445555555541    135689999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       173 ~g  174 (192)
T 2il1_A          173 DN  174 (192)
T ss_dssp             TT
T ss_pred             CC
Confidence            86

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.94  E-value=9.1e-27  Score=165.34  Aligned_cols=145  Identities=19%  Similarity=0.287  Sum_probs=112.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec---C--eEEEEEEcCCCCcchhhHHHH
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS---N--SKLVFWDLGGQPGLRSIWEKY   88 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~i~D~~G~~~~~~~~~~~   88 (170)
                      ....+||+++|.+|+|||||++++.+      +.....+.++.+.........   +  ..+.+|||||++.+...+..+
T Consensus         8 ~~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   81 (218)
T 4djt_A            8 RELTYKICLIGDGGVGKTTYINRVLD------GRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVY   81 (218)
T ss_dssp             --CEEEEEEECCTTSSHHHHHCBCTT------CSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHH
T ss_pred             ccCccEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHH
Confidence            45779999999999999999999976      333445556666555443331   1  679999999999888888899


Q ss_pred             hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeee
Q 030848           89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVS  166 (170)
Q Consensus        89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S  166 (170)
                      ++.+|++|+|+|++++.+++....|+..+..... .+.|+++|+||+|+.+  ....++..+.+.     ...++++++|
T Consensus        82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~S  155 (218)
T 4djt_A           82 YIGASGAILFFDVTSRITCQNLARWVKEFQAVVG-NEAPIVVCANKIDIKNRQKISKKLVMEVLK-----GKNYEYFEIS  155 (218)
T ss_dssp             HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-SSSCEEEEEECTTCC----CCHHHHHHHTT-----TCCCEEEEEB
T ss_pred             hhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCcEEEEe
Confidence            9999999999999999999988888887765432 4689999999999976  345556656665     5567899999


Q ss_pred             ccCC
Q 030848          167 GYDG  170 (170)
Q Consensus       167 a~~g  170 (170)
                      |++|
T Consensus       156 a~~g  159 (218)
T 4djt_A          156 AKTA  159 (218)
T ss_dssp             TTTT
T ss_pred             cCCC
Confidence            9986

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.94  E-value=8.5e-27  Score=161.53  Aligned_cols=143  Identities=23%  Similarity=0.346  Sum_probs=106.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEE--ecCeEEEEEEcCCCCcchhhHHHHhh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIE--VSNSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ....+||+++|++|+|||||++++.+      +.....+.++...... .+.  .....+.+|||||++.+...+..+++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   77 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAK------DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYP   77 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcC
Confidence            45679999999999999999999987      3333344455544432 222  23467999999999999888888999


Q ss_pred             ccCEEEEEEeCCCcccHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCccc--------------cCCHHHHHhHhCcccc
Q 030848           91 EAHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKL  155 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--------------~~~~~~~~~~~~~~~~  155 (170)
                      .+|++|+|+|++++.+++.+ ..|...+....  ++.|+++++||+|+.+              ....++..+.++..  
T Consensus        78 ~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--  153 (184)
T 1m7b_A           78 DSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI--  153 (184)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH--
T ss_pred             CCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHc--
Confidence            99999999999999999888 56666665432  5789999999999974              24455555555411  


Q ss_pred             ccceeEEEeeecc
Q 030848          156 DERVCMFEAVSGY  168 (170)
Q Consensus       156 ~~~~~~~~~~Sa~  168 (170)
                        ..+++++|||+
T Consensus       154 --~~~~~~e~Sa~  164 (184)
T 1m7b_A          154 --GAATYIECSAL  164 (184)
T ss_dssp             --TCSEEEECBTT
T ss_pred             --CCcEEEEeeec
Confidence              13689999998

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=1.7e-26  Score=161.47  Aligned_cols=146  Identities=19%  Similarity=0.331  Sum_probs=111.2

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE-E--EecCeEEEEEEcCCCCcchhhHHHHhh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-I--EVSNSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ....++|+++|++|+|||||++++.+      +.....+.++.+..... +  +.....+.+|||||++.+...+..+++
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   78 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVK------GTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSIS   78 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHH------SCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHH
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHc------CCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhc
Confidence            45679999999999999999999987      33333444555444332 2  223457999999999999999999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+|++++|+|++++.+++....++..+..... ..+.|+++|+||+|+.+ ....++..+..+     ...++++++||+
T Consensus        79 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~  153 (199)
T 2gf0_A           79 KGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQ-----EWKCAFMETSAK  153 (199)
T ss_dssp             HCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHH-----HHTCEEEECBTT
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHH-----HhCCeEEEEecC
Confidence            99999999999999999888877766654322 24689999999999976 345555555554     345689999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       154 ~~  155 (199)
T 2gf0_A          154 MN  155 (199)
T ss_dssp             TT
T ss_pred             CC
Confidence            86

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.94  E-value=2.6e-26  Score=162.19  Aligned_cols=144  Identities=25%  Similarity=0.425  Sum_probs=110.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ...++|+++|++|+|||||++++.+      ........++++...  ..+...+  ..+.+|||||++.+...+..+++
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   91 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVE------DKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYR   91 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHH------CCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHT
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHh------CCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhc
Confidence            4568999999999999999999987      222333444444333  3344444  67999999999999888889999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      .+|++|+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.. ....++..+...     ...++++++||++
T Consensus        92 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~  165 (213)
T 3cph_A           92 GAMGIILVYDVTDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPFIESSAKN  165 (213)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTT-TCSEEEEEEECTTCSSCCSCHHHHHHHHH-----HHTCCEEECBTTT
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCcccccCHHHHHHHHH-----HcCCEEEEEeCCC
Confidence            99999999999999999888888887765432 5789999999999954 344555555554     3345799999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       166 ~  166 (213)
T 3cph_A          166 D  166 (213)
T ss_dssp             T
T ss_pred             C
Confidence            6

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.94  E-value=8.2e-27  Score=163.80  Aligned_cols=144  Identities=25%  Similarity=0.381  Sum_probs=107.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee--EEEEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ...+||+++|++|+|||||++++.+      +.......++.+..  ...+...+  ..+.+|||||++.+...+..+++
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~   96 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIE------NKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYR   96 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHT
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHh------CCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhc
Confidence            4579999999999999999999976      22223333444433  23344444  68999999999888888888999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+|++|+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+  .....+..+.++     ...++++++||+
T Consensus        97 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~SA~  170 (200)
T 2o52_A           97 GAAGALLVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFLEASRFAQ-----ENELMFLETSAL  170 (200)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEECTT
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCcccccccCHHHHHHHHH-----HcCCEEEEEeCC
Confidence            99999999999999999998888888765433 6789999999999975  345566666655     445789999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       171 ~g  172 (200)
T 2o52_A          171 TG  172 (200)
T ss_dssp             TC
T ss_pred             CC
Confidence            86

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.94  E-value=2.8e-27  Score=166.41  Aligned_cols=147  Identities=21%  Similarity=0.278  Sum_probs=88.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcce--eEEEEEec----CeEEEEEEcCCCCcchhhHHHH
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVS----NSKLVFWDLGGQPGLRSIWEKY   88 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~i~D~~G~~~~~~~~~~~   88 (170)
                      ...++|+++|++|+|||||++++.+...    .....+.+|++.  ....+...    ...+.+|||||++.+...+..+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   93 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGS----KFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQY   93 (208)
T ss_dssp             EEEEEEEEC--------------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCC----cccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHH
Confidence            4678999999999999999999976210    222344455542  22344444    4689999999999999888899


Q ss_pred             hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC--CCCCcEEEEeeCCCccc---cCCHHHHHhHhCccccccceeEEE
Q 030848           89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED--LQGAPLLILANKQDLPD---AVSADELARYLDLKKLDERVCMFE  163 (170)
Q Consensus        89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~ii~v~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~  163 (170)
                      ++.+|++|+|+|++++.+++.+..|+..+.....  ..+.|+++|+||+|+.+   ....++..+.++     ...++++
T Consensus        94 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~-----~~~~~~~  168 (208)
T 2yc2_C           94 WNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWAT-----TNTLDFF  168 (208)
T ss_dssp             CCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHH-----HTTCEEE
T ss_pred             HhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHH-----HcCCEEE
Confidence            9999999999999999999999999888876543  25789999999999976   445667777665     3347899


Q ss_pred             eeeccC-C
Q 030848          164 AVSGYD-G  170 (170)
Q Consensus       164 ~~Sa~~-g  170 (170)
                      ++||++ |
T Consensus       169 ~~Sa~~~~  176 (208)
T 2yc2_C          169 DVSANPPG  176 (208)
T ss_dssp             ECCC----
T ss_pred             EeccCCCC
Confidence            999998 5

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=2.3e-26  Score=160.49  Aligned_cols=143  Identities=19%  Similarity=0.298  Sum_probs=108.5

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEecC--eEEEEEEcCCCCcchhhHHHHhhc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      ...++|+++|++|+|||||++++.+      +.....+.++++.... .+...+  ..+.+||+||++.+...+..+++.
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   89 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYAN------DAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPM   89 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHH------SSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTT
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCC
Confidence            4668999999999999999999987      2333344455544432 333433  679999999999998888889999


Q ss_pred             cCEEEEEEeCCCcccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccc--------------CCHHHHHhHhCccccc
Q 030848           92 AHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLD  156 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--------------~~~~~~~~~~~~~~~~  156 (170)
                      +|++|+|+|++++.+++... .|+..+....  ++.|+++|+||+|+.+.              ...++..+..+     
T Consensus        90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----  162 (194)
T 2atx_A           90 TDVFLICFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAK-----  162 (194)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHH-----
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHH-----
Confidence            99999999999999998887 6666665542  47899999999999753              33444444444     


Q ss_pred             ccee-EEEeeeccCC
Q 030848          157 ERVC-MFEAVSGYDG  170 (170)
Q Consensus       157 ~~~~-~~~~~Sa~~g  170 (170)
                      .... +++++||++|
T Consensus       163 ~~~~~~~~~~Sa~~g  177 (194)
T 2atx_A          163 EIGACCYVECSALTQ  177 (194)
T ss_dssp             HHTCSCEEECCTTTC
T ss_pred             HcCCcEEEEeeCCCC
Confidence            2233 7999999986

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.94  E-value=1.8e-26  Score=158.91  Aligned_cols=147  Identities=24%  Similarity=0.350  Sum_probs=99.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee--EEEEEec---CeEEEEEEcCCCCcchhhHHHH
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVS---NSKLVFWDLGGQPGLRSIWEKY   88 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~i~D~~G~~~~~~~~~~~   88 (170)
                      .++.++|+++|++|+|||||++++.+      ........++.+..  ...+...   ...+.+|||||++.+...+..+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   78 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVN------DKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAF   78 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHH------SCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CC
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHh------CcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHH
Confidence            45789999999999999999999987      22233334444333  2233333   4679999999999999888889


Q ss_pred             hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCC---CCCCCcEEEEeeCCCcccc---CCHHHHHhHhCccccccceeEE
Q 030848           89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE---DLQGAPLLILANKQDLPDA---VSADELARYLDLKKLDERVCMF  162 (170)
Q Consensus        89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~ii~v~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~  162 (170)
                      ++.+|++|+|+|++++.+++.+..|+..+....   ...+.|+++++||+|+.+.   ...++..+..+.    ...+++
T Consensus        79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~----~~~~~~  154 (182)
T 1ky3_A           79 YRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS----LGDIPL  154 (182)
T ss_dssp             STTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH----TTSCCE
T ss_pred             hhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh----cCCCeE
Confidence            999999999999999999998888888776542   2357899999999999542   345555554431    235679


Q ss_pred             EeeeccCC
Q 030848          163 EAVSGYDG  170 (170)
Q Consensus       163 ~~~Sa~~g  170 (170)
                      +++||++|
T Consensus       155 ~~~Sa~~~  162 (182)
T 1ky3_A          155 FLTSAKNA  162 (182)
T ss_dssp             EEEBTTTT
T ss_pred             EEEecCCC
Confidence            99999986

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.3e-26  Score=164.01  Aligned_cols=144  Identities=24%  Similarity=0.411  Sum_probs=107.8

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ...++|+++|++|+|||||++++.+      ........++.+...  ..+...+  ..+.+|||||++.+...+..+++
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   84 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTK------NEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYR   84 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHH------CCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTT
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhc
Confidence            4678999999999999999999987      333333344444333  2344444  68999999999999888889999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+|++|+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+  ....++..+.++     ...++++++||+
T Consensus        85 ~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~  158 (223)
T 3cpj_B           85 GAVGALIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQ-----ENQLLFTETSAL  158 (223)
T ss_dssp             TCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCCC
T ss_pred             cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCC
Confidence            9999999999999999999988888886543 35789999999999976  345566666665     345789999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       159 ~~  160 (223)
T 3cpj_B          159 NS  160 (223)
T ss_dssp             -C
T ss_pred             CC
Confidence            86

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.94  E-value=1e-25  Score=159.47  Aligned_cols=129  Identities=30%  Similarity=0.392  Sum_probs=93.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec---CeEEEEEEcCCCCcchh-hHHHHh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS---NSKLVFWDLGGQPGLRS-IWEKYY   89 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~D~~G~~~~~~-~~~~~~   89 (170)
                      .++.++|+++|++|+|||||++++.+      +.....+ +++......+...   +..+.+|||||++.+.. .+..++
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   76 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLT------GQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFK   76 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHH------SCCCCBC-CCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHG
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhC------CCccccc-CCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHH
Confidence            45679999999999999999999987      2233333 2334444445555   57899999999999887 788889


Q ss_pred             hccCEEEEEEeCCCcc-cHHHHHHHHHHHHcC--CCCCCCcEEEEeeCCCccccCCHHHHHhH
Q 030848           90 EEAHAVVFVIDAACPS-RFEDSKTALEKVLRN--EDLQGAPLLILANKQDLPDAVSADELARY  149 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~~ii~v~nK~D~~~~~~~~~~~~~  149 (170)
                      +.+|++|+|+|+++.. ++.....++..++..  ....+.|+++|+||+|+.+....++..+.
T Consensus        77 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~  139 (214)
T 2fh5_B           77 SSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQ  139 (214)
T ss_dssp             GGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHH
T ss_pred             hhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHH
Confidence            9999999999999853 455566655555432  22357899999999999876655444433

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.94  E-value=1.5e-26  Score=163.02  Aligned_cols=148  Identities=19%  Similarity=0.292  Sum_probs=104.8

Q ss_pred             hhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEe--cCeEEEEEEcCCCCcchhhHHH
Q 030848           11 YIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEV--SNSKLVFWDLGGQPGLRSIWEK   87 (170)
Q Consensus        11 ~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~   87 (170)
                      .....+.+||+++|.+|+|||||++++..      +.......+++..... .+..  ....+.+|||||++.+...+..
T Consensus        24 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~   97 (204)
T 4gzl_A           24 LYFQGQAIKCVVVGDGAVGKTCLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPL   97 (204)
T ss_dssp             ------CEEEEEEESTTSSHHHHHHHHHH------SCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGG
T ss_pred             HhhcCCeEEEEEECcCCCCHHHHHHHHHh------CCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHH
Confidence            34456789999999999999999999986      3333344444443322 2233  3456779999999999988888


Q ss_pred             HhhccCEEEEEEeCCCcccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCccccC--------------CHHHHHhHhCc
Q 030848           88 YYEEAHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDAV--------------SADELARYLDL  152 (170)
Q Consensus        88 ~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~--------------~~~~~~~~~~~  152 (170)
                      +++.+|++++|+|++++.+++... .|+..+....  ++.|+++|+||+|+.+..              ..++..+..+.
T Consensus        98 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  175 (204)
T 4gzl_A           98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE  175 (204)
T ss_dssp             GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHh
Confidence            999999999999999999998887 5665555433  578999999999997642              23333333331


Q ss_pred             cccccceeEEEeeeccCC
Q 030848          153 KKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       153 ~~~~~~~~~~~~~Sa~~g  170 (170)
                          ....+++++||++|
T Consensus       176 ----~~~~~~~~~SA~~g  189 (204)
T 4gzl_A          176 ----IGAVKYLECSALTQ  189 (204)
T ss_dssp             ----TTCSEEEECCTTTC
T ss_pred             ----cCCcEEEEeeCCCC
Confidence                12247999999987

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.94  E-value=1.7e-26  Score=159.60  Aligned_cols=143  Identities=20%  Similarity=0.317  Sum_probs=105.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEe--cCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      +..++|+++|++|+|||||++++.+      +.....+.+++..... .+..  ....+.+|||||++.+...+..+++.
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   76 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQ   76 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHH------SSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTT
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHc------CCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccC
Confidence            4679999999999999999999986      2223333344443322 2233  34568899999999998888889999


Q ss_pred             cCEEEEEEeCCCcccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccc--------------CCHHHHHhHhCccccc
Q 030848           92 AHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLD  156 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--------------~~~~~~~~~~~~~~~~  156 (170)
                      +|++++|+|++++.+++... .|+..+....  ++.|+++|+||+|+.+.              ...++..+..+     
T Consensus        77 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----  149 (186)
T 1mh1_A           77 TDVSLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK-----  149 (186)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH-----
T ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHH-----
Confidence            99999999999999998887 5666665432  47899999999999753              22333333333     


Q ss_pred             cce-eEEEeeeccCC
Q 030848          157 ERV-CMFEAVSGYDG  170 (170)
Q Consensus       157 ~~~-~~~~~~Sa~~g  170 (170)
                      ... .+++++||++|
T Consensus       150 ~~~~~~~~~~Sa~~g  164 (186)
T 1mh1_A          150 EIGAVKYLECSALTQ  164 (186)
T ss_dssp             HTTCSEEEECCTTTC
T ss_pred             hcCCcEEEEecCCCc
Confidence            223 38999999986

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.94  E-value=4.2e-27  Score=167.57  Aligned_cols=144  Identities=18%  Similarity=0.377  Sum_probs=111.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEE----EecCeEEEEEEcCCCCcchhhHHHHh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI----EVSNSKLVFWDLGGQPGLRSIWEKYY   89 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~D~~G~~~~~~~~~~~~   89 (170)
                      ....+||+++|.+|+|||||++++..      +.....+.++.+......    +.....+.+|||||++.+...+..++
T Consensus        12 ~~~~~ki~v~G~~~~GKSsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   85 (221)
T 3gj0_A           12 PQVQFKLVLVGDGGTGKTTFVKRHLT------GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYY   85 (221)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHTTBHH------HHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHH
Confidence            45679999999999999999999654      122233445554443332    23456899999999999988889999


Q ss_pred             hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +.+|++|+|+|++++.+++.+..|+..+....  ++.|+++|+||+|+.+.....+..+..+     ...++++++||++
T Consensus        86 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~  158 (221)
T 3gj0_A           86 IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKS  158 (221)
T ss_dssp             TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGGCCHHH-----HHTCEEEECBGGG
T ss_pred             hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHHHHHHH-----HcCCEEEEEeCCC
Confidence            99999999999999999999988888887653  4789999999999987544333333333     4457899999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       159 ~  159 (221)
T 3gj0_A          159 N  159 (221)
T ss_dssp             T
T ss_pred             C
Confidence            6

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.94  E-value=9.8e-27  Score=164.52  Aligned_cols=145  Identities=19%  Similarity=0.255  Sum_probs=108.4

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEe--cCeEEEEEEcCCCCcchhhHHHHh
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEV--SNSKLVFWDLGGQPGLRSIWEKYY   89 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~   89 (170)
                      .....++|+++|++|+|||||++++..      +.....+.++++.... .+..  ....+.+|||||++.+...+..++
T Consensus         5 ~~~~~~ki~i~G~~~~GKTsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   78 (212)
T 2j0v_A            5 SVSKFIKCVTVGDGAVGKTCMLICYTS------NKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSY   78 (212)
T ss_dssp             SCCCEEEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGG
T ss_pred             CcCceEEEEEECCCCCCHHHHHHHHhc------CCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhc
Confidence            345789999999999999999999986      2333344455544432 2333  346899999999999988888899


Q ss_pred             hccCEEEEEEeCCCcccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCccccC----------CHHHHHhHhCccccccc
Q 030848           90 EEAHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDAV----------SADELARYLDLKKLDER  158 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~----------~~~~~~~~~~~~~~~~~  158 (170)
                      +.+|++|+|+|++++.+++.+. .|+..+....  ++.|+++|+||+|+.+..          ..++..+..+     ..
T Consensus        79 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~-----~~  151 (212)
T 2j0v_A           79 RGADIFVLAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRK-----QI  151 (212)
T ss_dssp             TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHH-----HH
T ss_pred             cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHH-----Hc
Confidence            9999999999999999998886 6666665442  478999999999997632          4555555554     22


Q ss_pred             e-eEEEeeeccCC
Q 030848          159 V-CMFEAVSGYDG  170 (170)
Q Consensus       159 ~-~~~~~~Sa~~g  170 (170)
                      . .+++++||++|
T Consensus       152 ~~~~~~~~Sa~~g  164 (212)
T 2j0v_A          152 GAAAYIECSSKTQ  164 (212)
T ss_dssp             TCSEEEECCTTTC
T ss_pred             CCceEEEccCCCC
Confidence            3 48999999986

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=5.7e-26  Score=160.95  Aligned_cols=146  Identities=19%  Similarity=0.279  Sum_probs=104.0

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee--EEEEEec--CeEEEEEEcCCCCc-chhhHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVS--NSKLVFWDLGGQPG-LRSIWEKYY   89 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~i~D~~G~~~-~~~~~~~~~   89 (170)
                      ...+||+++|++|+|||||++++.+......    ..+ ++++..  ...+.+.  ...+.+|||+|++. .......++
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~----~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~  109 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMD----SDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCM  109 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTTC----CC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCC----CcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHH
Confidence            4568999999999999999999975211111    111 122222  2233343  35678999999876 344555667


Q ss_pred             hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeec
Q 030848           90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSG  167 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  167 (170)
                      +.++++|+|||++++.+|+.+..|+..+.......+.|+++|+||+|+.+  ....++......     ...++|++|||
T Consensus       110 ~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~-----~~~~~~~e~SA  184 (211)
T 2g3y_A          110 QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAV-----VFDCKFIETSA  184 (211)
T ss_dssp             CCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEECBT
T ss_pred             hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHH-----HcCCEEEEEeC
Confidence            88999999999999999999988888776543345789999999999975  345555544443     34568999999


Q ss_pred             cCC
Q 030848          168 YDG  170 (170)
Q Consensus       168 ~~g  170 (170)
                      ++|
T Consensus       185 k~g  187 (211)
T 2g3y_A          185 AVQ  187 (211)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            987

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=3.5e-26  Score=161.32  Aligned_cols=145  Identities=22%  Similarity=0.304  Sum_probs=102.7

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEec--CeEEEEEEcCCCCcchhhHHHHh
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVS--NSKLVFWDLGGQPGLRSIWEKYY   89 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~   89 (170)
                      .....+||+++|.+|+|||||++++.+      +.....+.+++..... .+...  ...+.+|||||++.+...+..++
T Consensus        21 ~~~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   94 (207)
T 2fv8_A           21 QSMIRKKLVVVGDGACGKTCLLIVFSK------DEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSY   94 (207)
T ss_dssp             GGSEEEEEEEEECTTSSHHHHHHHHHH------SSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGC
T ss_pred             ccccCcEEEEECcCCCCHHHHHHHHhc------CCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhc
Confidence            346778999999999999999999987      2333334445444432 23333  35799999999999988888899


Q ss_pred             hccCEEEEEEeCCCcccHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCccccC--------------CHHHHHhHhCccc
Q 030848           90 EEAHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPDAV--------------SADELARYLDLKK  154 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~--------------~~~~~~~~~~~~~  154 (170)
                      +.+|++|+|+|++++.+++.. ..|+..+....  ++.|+++|+||+|+.+..              ..++..+...   
T Consensus        95 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~---  169 (207)
T 2fv8_A           95 PDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC--PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAV---  169 (207)
T ss_dssp             TTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH---
T ss_pred             CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHH---
Confidence            999999999999999999888 45555554432  578999999999997642              2222222222   


Q ss_pred             cccce-eEEEeeeccCC
Q 030848          155 LDERV-CMFEAVSGYDG  170 (170)
Q Consensus       155 ~~~~~-~~~~~~Sa~~g  170 (170)
                        ... .+++++||++|
T Consensus       170 --~~~~~~~~~~SA~~g  184 (207)
T 2fv8_A          170 --RIQAYDYLECSAKTK  184 (207)
T ss_dssp             --HTTCSEEEECCTTTC
T ss_pred             --hcCCCEEEEeeCCCC
Confidence              122 38999999986

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.94  E-value=5.2e-27  Score=161.82  Aligned_cols=145  Identities=19%  Similarity=0.250  Sum_probs=98.3

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHh
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYY   89 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~   89 (170)
                      ..+..+||+++|++|+|||||++++..      +.....+.++++....   .++.....+.+|||||++.+...+..++
T Consensus         4 ~~~~~~ki~v~G~~~~GKssl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   77 (182)
T 3bwd_D            4 SASRFIKCVTVGDGAVGKTCLLISYTS------NTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSY   77 (182)
T ss_dssp             ---CCCEEEEECSTTSSHHHHHHHHHH------SCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGG
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhc
Confidence            345789999999999999999999986      2223333344432221   1233456678999999999988888899


Q ss_pred             hccCEEEEEEeCCCcccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCccccC------------CHHHHHhHhCccccc
Q 030848           90 EEAHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDAV------------SADELARYLDLKKLD  156 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~------------~~~~~~~~~~~~~~~  156 (170)
                      +.+|++++|+|++++.+++.+. .|...+....  ++.|+++++||+|+.+..            ..++..+..+     
T Consensus        78 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~-----  150 (182)
T 3bwd_D           78 RGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKK-----  150 (182)
T ss_dssp             TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHH-----
T ss_pred             cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHH-----
Confidence            9999999999999999998887 5666665442  478999999999997532            3444454444     


Q ss_pred             cce-eEEEeeeccCC
Q 030848          157 ERV-CMFEAVSGYDG  170 (170)
Q Consensus       157 ~~~-~~~~~~Sa~~g  170 (170)
                      ... .+++++||++|
T Consensus       151 ~~~~~~~~~~Sa~~~  165 (182)
T 3bwd_D          151 LIGAPAYIECSSKSQ  165 (182)
T ss_dssp             HHTCSEEEECCTTTC
T ss_pred             HcCCCEEEEEECCCC
Confidence            223 38999999986

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.94  E-value=5e-26  Score=159.85  Aligned_cols=144  Identities=23%  Similarity=0.339  Sum_probs=105.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE-EEEEec--CeEEEEEEcCCCCcchhhHHHHhh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVS--NSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ....+||+++|.+|+|||||++++.+      +.....+.++++... ..+...  ...+.+|||||++.+...+..+++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   95 (201)
T 2gco_A           22 AAIRKKLVIVGDGACGKTCLLIVFSK------DQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYP   95 (201)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHH------SSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCT
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHh------CcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcC
Confidence            35678999999999999999999987      222233344444332 223333  357999999999999888888999


Q ss_pred             ccCEEEEEEeCCCcccHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCcccc--------------CCHHHHHhHhCcccc
Q 030848           91 EAHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKL  155 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--------------~~~~~~~~~~~~~~~  155 (170)
                      .+|++|+|+|++++.+++.. ..|...+....  ++.|+++|+||+|+.+.              ...++..+.++    
T Consensus        96 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----  169 (201)
T 2gco_A           96 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMAN----  169 (201)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHH----
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHH----
Confidence            99999999999999999888 45555554432  57899999999999764              22333333333    


Q ss_pred             cccee-EEEeeeccCC
Q 030848          156 DERVC-MFEAVSGYDG  170 (170)
Q Consensus       156 ~~~~~-~~~~~Sa~~g  170 (170)
                       .... +++++||++|
T Consensus       170 -~~~~~~~~~~SA~~g  184 (201)
T 2gco_A          170 -RISAFGYLECSAKTK  184 (201)
T ss_dssp             -HTTCSEEEECCTTTC
T ss_pred             -hCCCcEEEEeeCCCC
Confidence             2223 8999999986

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.94  E-value=2.8e-26  Score=161.84  Aligned_cols=143  Identities=23%  Similarity=0.354  Sum_probs=106.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEe--cCeEEEEEEcCCCCcchhhHHHHhh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEV--SNSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ....+||+++|++|+|||||++++.+      ......+.++...... .+..  ....+.+|||||++.+...+..+++
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   98 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAK------DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYP   98 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhc------CCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhcc
Confidence            35679999999999999999999987      3333444455554432 2222  3467999999999998888888999


Q ss_pred             ccCEEEEEEeCCCcccHHHH-HHHHHHHHcCCCCCCCcEEEEeeCCCccc--------------cCCHHHHHhHhCcccc
Q 030848           91 EAHAVVFVIDAACPSRFEDS-KTALEKVLRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKL  155 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--------------~~~~~~~~~~~~~~~~  155 (170)
                      .+|++|+|+|++++.+++.+ ..|+..+....  ++.|+++|+||+|+.+              ....++..+.++..  
T Consensus        99 ~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--  174 (205)
T 1gwn_A           99 DSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI--  174 (205)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH--
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHc--
Confidence            99999999999999999888 56766665432  5789999999999974              23445555555411  


Q ss_pred             ccceeEEEeeecc
Q 030848          156 DERVCMFEAVSGY  168 (170)
Q Consensus       156 ~~~~~~~~~~Sa~  168 (170)
                        ..++|++|||+
T Consensus       175 --~~~~~~e~SAk  185 (205)
T 1gwn_A          175 --GAATYIECSAL  185 (205)
T ss_dssp             --TCSEEEECCTT
T ss_pred             --CCCEEEEeeec
Confidence              13589999998

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.94  E-value=3e-26  Score=162.56  Aligned_cols=143  Identities=20%  Similarity=0.300  Sum_probs=90.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEe--cCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      ...+||+++|++|+|||||++++.+      +.....+.+++..... .+..  ....+.+|||||++.+...+..+++.
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~  105 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFAD------GAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPD  105 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------------CCCCCEEEEEEEEETTEEEEEEEEEC---------------C
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhcc
Confidence            4679999999999999999999976      2223333444443322 2333  34579999999999999999999999


Q ss_pred             cCEEEEEEeCCCcccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCccccC--------------CHHHHHhHhCccccc
Q 030848           92 AHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDAV--------------SADELARYLDLKKLD  156 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~--------------~~~~~~~~~~~~~~~  156 (170)
                      +|++|+|+|++++.+++.+. .|+..+....  ++.|+++|+||+|+.+..              ..++..+..+     
T Consensus       106 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----  178 (214)
T 2j1l_A          106 ASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMAR-----  178 (214)
T ss_dssp             EEEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHH-----
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHH-----
Confidence            99999999999999998886 5666665432  578999999999997632              3333344443     


Q ss_pred             cce-eEEEeeeccCC
Q 030848          157 ERV-CMFEAVSGYDG  170 (170)
Q Consensus       157 ~~~-~~~~~~Sa~~g  170 (170)
                      ... .++++|||++|
T Consensus       179 ~~~~~~~~~~SA~~g  193 (214)
T 2j1l_A          179 SVGAVAYLECSARLH  193 (214)
T ss_dssp             HTTCSEEEECBTTTT
T ss_pred             hcCCCEEEEecCCCC
Confidence            223 38999999986

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.94  E-value=4.8e-26  Score=160.15  Aligned_cols=147  Identities=22%  Similarity=0.374  Sum_probs=110.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEec--CeEEEEEEcCCCCcchhhHHHHh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYY   89 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~   89 (170)
                      .+..++|+++|++|+|||||++++.+      ......+.++.+....  .+...  ...+.+|||||++.+...+..++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   78 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVN------KKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFY   78 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHH------SCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGG
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHH
Confidence            45789999999999999999999987      3333344455554433  23333  36799999999999888888889


Q ss_pred             hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC---CCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEee
Q 030848           90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNED---LQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAV  165 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (170)
                      +.+|++|+|+|++++.+++.+..|+..+.....   ..+.|+++++||+|+.+ ....++..+...    ....++++++
T Consensus        79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~  154 (207)
T 1vg8_A           79 RGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFET  154 (207)
T ss_dssp             TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEEC
T ss_pred             hCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEE
Confidence            999999999999999999888888877765432   24689999999999975 344455554443    1345679999


Q ss_pred             eccCC
Q 030848          166 SGYDG  170 (170)
Q Consensus       166 Sa~~g  170 (170)
                      ||++|
T Consensus       155 Sa~~g  159 (207)
T 1vg8_A          155 SAKEA  159 (207)
T ss_dssp             BTTTT
T ss_pred             eCCCC
Confidence            99986

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.94  E-value=3e-26  Score=160.72  Aligned_cols=144  Identities=17%  Similarity=0.297  Sum_probs=103.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ....++|+++|++|+|||||++++.+      +.....+.+|+..... .+...+  ..+.+|||||++.+...+..+++
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   90 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTT------NGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYT   90 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC--------------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGT
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcC
Confidence            45679999999999999999999986      2233444455554432 233444  56889999999999888888999


Q ss_pred             ccCEEEEEEeCCCcccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccc--------------CCHHHHHhHhCcccc
Q 030848           91 EAHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKL  155 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--------------~~~~~~~~~~~~~~~  155 (170)
                      .+|++|+|+|++++.+++.+. .|+..+....  ++.|+++|+||+|+.+.              ...++..+...    
T Consensus        91 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----  164 (201)
T 2q3h_A           91 NTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAE----  164 (201)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH----
T ss_pred             CCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHH----
Confidence            999999999999999998886 5766665543  47899999999999752              33444444443    


Q ss_pred             ccce-eEEEeeeccCC
Q 030848          156 DERV-CMFEAVSGYDG  170 (170)
Q Consensus       156 ~~~~-~~~~~~Sa~~g  170 (170)
                       ... .++++|||++|
T Consensus       165 -~~~~~~~~~~Sa~~g  179 (201)
T 2q3h_A          165 -EIKAASYIECSALTQ  179 (201)
T ss_dssp             -HHTCSEEEECCTTTC
T ss_pred             -hcCCcEEEEEecCCC
Confidence             223 38999999986

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.93  E-value=2.3e-25  Score=155.57  Aligned_cols=146  Identities=18%  Similarity=0.249  Sum_probs=100.8

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee--EEEEEec--CeEEEEEEcCCCCc-chhhHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVS--NSKLVFWDLGGQPG-LRSIWEKYY   89 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~i~D~~G~~~-~~~~~~~~~   89 (170)
                      ...+||+++|++|+|||||++++.+......    ... ++++..  ...+.+.  ...+.+|||+|++. .......++
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~   78 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMD----SDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCM   78 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC---------GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcC----ccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhc
Confidence            5679999999999999999999976222111    111 112222  2233443  34678999999765 333456677


Q ss_pred             hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeec
Q 030848           90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSG  167 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  167 (170)
                      +.+|++++|||++++.+++....|+..+.......+.|+++++||+|+.+  ....++......     ...++|++|||
T Consensus        79 ~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~-----~~~~~~~e~SA  153 (192)
T 2cjw_A           79 QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAV-----VFDXKFIETSA  153 (192)
T ss_dssp             HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECBT
T ss_pred             ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHH-----HhCCceEEecc
Confidence            88999999999999999999988887776543335789999999999974  344444444333     33468999999


Q ss_pred             cCC
Q 030848          168 YDG  170 (170)
Q Consensus       168 ~~g  170 (170)
                      ++|
T Consensus       154 ~~g  156 (192)
T 2cjw_A          154 AVQ  156 (192)
T ss_dssp             TTT
T ss_pred             ccC
Confidence            987

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.93  E-value=5.9e-26  Score=157.41  Aligned_cols=147  Identities=18%  Similarity=0.304  Sum_probs=100.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe-------cCeEEEEEEcCCCCcchhhHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-------SNSKLVFWDLGGQPGLRSIWEKYY   89 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~D~~G~~~~~~~~~~~~   89 (170)
                      ++||+++|++|+|||||++++.+...    .....+.+|++........       ....+.+|||+|++.+...+..++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~----~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~   77 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKK----SDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFM   77 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC---------------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCC----ccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHc
Confidence            58999999999999999999976211    1223344566665543322       456899999999998888888889


Q ss_pred             hccCEEEEEEeCCCc-ccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCH----HH-HHhHhCccccccceeEEE
Q 030848           90 EEAHAVVFVIDAACP-SRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA----DE-LARYLDLKKLDERVCMFE  163 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~----~~-~~~~~~~~~~~~~~~~~~  163 (170)
                      +.++++++|+|++++ .+++.+..|+..+....  ++.|+++|+||+|+.+....    .+ ..+..+..+. ....+++
T Consensus        78 ~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  154 (184)
T 2zej_A           78 TQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGF-PAIRDYH  154 (184)
T ss_dssp             HHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTS-CEEEEEE
T ss_pred             cCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCC-cchhheE
Confidence            999999999999987 47888888888776542  47899999999999753221    11 1222221111 2223599


Q ss_pred             eeeccCC
Q 030848          164 AVSGYDG  170 (170)
Q Consensus       164 ~~Sa~~g  170 (170)
                      ++||++|
T Consensus       155 ~~Sa~~~  161 (184)
T 2zej_A          155 FVNATEE  161 (184)
T ss_dssp             ECCTTSC
T ss_pred             EEecccC
Confidence            9999986

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.93  E-value=5e-27  Score=164.64  Aligned_cols=144  Identities=27%  Similarity=0.442  Sum_probs=101.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee--EEEEEecC--eEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ...+||+++|++|+|||||++++.+      +.......++.+..  ...+...+  ..+.+|||||++.+...+..+++
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~  104 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFAD------DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYR  104 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBC------CCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--C
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc------CCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhh
Confidence            3568999999999999999999975      33334444444433  33444444  67999999999999888888899


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+|++|+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.  ...++..+..+     ...++++++||+
T Consensus       105 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~vSA~  178 (199)
T 3l0i_B          105 GAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVVDYTTAKEFAD-----SLGIPFLETSAK  178 (199)
T ss_dssp             CCSEEEECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-CHHHH-----TTTCCBCCCCC-
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc-CCCCEEEEEECccCCccccCCHHHHHHHHH-----HcCCeEEEEECC
Confidence            99999999999999999999988888865433 57899999999999753  22233333333     334679999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       179 ~g  180 (199)
T 3l0i_B          179 NA  180 (199)
T ss_dssp             --
T ss_pred             CC
Confidence            86

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.92  E-value=9.6e-25  Score=152.70  Aligned_cols=152  Identities=18%  Similarity=0.220  Sum_probs=98.2

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE-ecCeEEEEEEcCCCCcchhhH---HHH
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE-VSNSKLVFWDLGGQPGLRSIW---EKY   88 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~---~~~   88 (170)
                      ..++.+||+++|++|+|||||++++.+.....   .......+.......+. .....+.+|||||++.+....   ..+
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   92 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI   92 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence            34578999999999999999999886621111   00011111111111121 455789999999999987765   788


Q ss_pred             hhccCEEEEEEeCCCc--ccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCH----HHH----HhHhCccccccc
Q 030848           89 YEEAHAVVFVIDAACP--SRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA----DEL----ARYLDLKKLDER  158 (170)
Q Consensus        89 ~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~----~~~----~~~~~~~~~~~~  158 (170)
                      ++.+|++|+|+|++++  +++.....|+..+...  .++.|+++|+||+|+.+....    .++    .+.+........
T Consensus        93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  170 (196)
T 3llu_A           93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL  170 (196)
T ss_dssp             HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred             cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence            9999999999999987  5556666666665332  258999999999998652211    111    111221222256


Q ss_pred             eeEEEeeeccC
Q 030848          159 VCMFEAVSGYD  169 (170)
Q Consensus       159 ~~~~~~~Sa~~  169 (170)
                      .++|++|||++
T Consensus       171 ~~~~~e~Sa~~  181 (196)
T 3llu_A          171 HLSFYLTSIYD  181 (196)
T ss_dssp             CEEEEEECTTS
T ss_pred             CcceEEEEech
Confidence            78999999985

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.86  E-value=8.2e-27  Score=164.08  Aligned_cols=145  Identities=20%  Similarity=0.309  Sum_probs=103.1

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHh
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYY   89 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~   89 (170)
                      ..++.+||+++|.+|+|||||++++..      +.......+++.....   .++.....+.+|||||++.+...+..++
T Consensus        26 ~~~~~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~   99 (204)
T 3th5_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY   99 (204)
Confidence            346789999999999999999999975      2222223333322221   2333456688999999999998888999


Q ss_pred             hccCEEEEEEeCCCcccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCccccCC--------------HHHHHhHhCccc
Q 030848           90 EEAHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDAVS--------------ADELARYLDLKK  154 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~--------------~~~~~~~~~~~~  154 (170)
                      +.+|++++|+|++++.+++... .|+..+....  ++.|+++|+||+|+.+...              .++..+..+   
T Consensus       100 ~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~---  174 (204)
T 3th5_A          100 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK---  174 (204)
Confidence            9999999999999999998886 5555554322  3789999999999976321              112222222   


Q ss_pred             ccccee-EEEeeeccCC
Q 030848          155 LDERVC-MFEAVSGYDG  170 (170)
Q Consensus       155 ~~~~~~-~~~~~Sa~~g  170 (170)
                        .... +++++||++|
T Consensus       175 --~~~~~~~~~vSA~~g  189 (204)
T 3th5_A          175 --EIGAVKYLECSALTQ  189 (204)
Confidence              3334 8999999986

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.92  E-value=3e-24  Score=160.08  Aligned_cols=149  Identities=18%  Similarity=0.254  Sum_probs=108.2

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe-cCeEEEEEEcCCCCcc-----hhhHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQPGL-----RSIWEKYY   89 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~-----~~~~~~~~   89 (170)
                      ..+||+++|.+|+|||||++++.+....   .......+|.+.....+.. .+..+.+|||||++.+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~---~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSA---FDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCT---GGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCC---ccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            4689999999999999999998762111   1112455677777766664 5688999999999887     56788888


Q ss_pred             hccCEEEEEEeCCCcccHHHHHHHHHHHHcCC-CCCCCcEEEEeeCCCccccCCH--------HHHHhHhCcccccccee
Q 030848           90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNE-DLQGAPLLILANKQDLPDAVSA--------DELARYLDLKKLDERVC  160 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~ii~v~nK~D~~~~~~~--------~~~~~~~~~~~~~~~~~  160 (170)
                      +.+|++|+|+|++++.+++.+..|...+.... ..++.|+++++||+|+.++...        +++.+..+..+.  ..+
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~--~~~  156 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGF--PNL  156 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTC--CSC
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCC--CCe
Confidence            99999999999999999988876644432211 1257999999999999763222        333333331111  137


Q ss_pred             EEEeeeccC
Q 030848          161 MFEAVSGYD  169 (170)
Q Consensus       161 ~~~~~Sa~~  169 (170)
                      +++++||++
T Consensus       157 ~~~~tSa~~  165 (307)
T 3r7w_A          157 IGFPTSIWD  165 (307)
T ss_dssp             EEEECCTTS
T ss_pred             EEEEeeecC
Confidence            999999986

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.91  E-value=8.2e-24  Score=145.23  Aligned_cols=145  Identities=21%  Similarity=0.286  Sum_probs=100.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccC--CcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      ..+.++|+++|++|+|||||++++.+.      .......+  +.......+...+..+.+|||||++.+...+..+++.
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   78 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHS------KVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQV   78 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTT------CSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCC------ccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhh
Confidence            457789999999999999999999762      11111111  2233334566778889999999999988888888899


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccc--cc--ceeEEEeeec
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL--DE--RVCMFEAVSG  167 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~Sa  167 (170)
                      +|++|+|+|++++...+. ...+..+..    .+.|+++|+||+|+.+. ..++..+.++....  ..  ..++++++||
T Consensus        79 ~d~~i~v~d~~~~~~~~~-~~~l~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  152 (178)
T 2lkc_A           79 TDIVILVVAADDGVMPQT-VEAINHAKA----ANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSA  152 (178)
T ss_dssp             CCEEEEEEETTCCCCHHH-HHHHHHHGG----GSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCS
T ss_pred             CCEEEEEEECCCCCcHHH-HHHHHHHHh----CCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEec
Confidence            999999999988544332 222333322    47899999999999764 33444444332211  11  2379999999


Q ss_pred             cCC
Q 030848          168 YDG  170 (170)
Q Consensus       168 ~~g  170 (170)
                      ++|
T Consensus       153 ~~~  155 (178)
T 2lkc_A          153 KTK  155 (178)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            986

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.91  E-value=4e-24  Score=159.16  Aligned_cols=145  Identities=19%  Similarity=0.210  Sum_probs=98.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh---hHHHHhhccCEE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS---IWEKYYEEAHAV   95 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~~~~   95 (170)
                      ||+++|+.|+||||+++++.+...   ........+|++.....+. ...++++|||+|++++..   .+..+++.++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~---~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~   76 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQ---PLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL   76 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCC---SGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCC---CCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence            689999999999999998764111   1111235577777766553 457899999999999964   468899999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHcC--CCCCCCcEEEEeeCCCccccCCH----HHHH----hHhCccccccceeEEEee
Q 030848           96 VFVIDAACPSRFEDSKTALEKVLRN--EDLQGAPLLILANKQDLPDAVSA----DELA----RYLDLKKLDERVCMFEAV  165 (170)
Q Consensus        96 i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~ii~v~nK~D~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~  165 (170)
                      |+|||+++.  +.+...++..++..  ...++.|+++++||+|+.++..+    .++.    +.+...+.+...++|++|
T Consensus        77 IlV~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           77 VYVIDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEECCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            999999987  33344444333221  11267999999999999764321    1111    122222222357899999


Q ss_pred             eccC
Q 030848          166 SGYD  169 (170)
Q Consensus       166 Sa~~  169 (170)
                      ||++
T Consensus       155 SAkd  158 (331)
T 3r7w_B          155 SIFD  158 (331)
T ss_dssp             CSSS
T ss_pred             ccCC
Confidence            9985

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=6.7e-25  Score=155.67  Aligned_cols=149  Identities=21%  Similarity=0.281  Sum_probs=102.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhc--
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE--   91 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~--   91 (170)
                      ....++|+++|++|+|||||++++.+...  . .......+++...     .....+.+|||||++.+...+..+++.  
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~--~-~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   80 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSV--R-PTVVSQEPLSAAD-----YDGSGVTLVDFPGHVKLRYKLSDYLKTRA   80 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSC--C-CBCCCSSCEEETT-----GGGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCC--C-CeeeecCceEEEE-----eeCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence            45678999999999999999999987211  1 1111233333222     256789999999999998888888887  


Q ss_pred             --cCEEEEEEeCC-CcccHHHHHHHHHHHHcCC---CCCCCcEEEEeeCCCccccCCHHHHHhHhCc---cccccceeEE
Q 030848           92 --AHAVVFVIDAA-CPSRFEDSKTALEKVLRNE---DLQGAPLLILANKQDLPDAVSADELARYLDL---KKLDERVCMF  162 (170)
Q Consensus        92 --~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~---~~~~~~~~~~  162 (170)
                        +|++|+|+|++ ++.++.....++..+....   ...+.|+++++||+|+.+.....++.+.++.   .......+++
T Consensus        81 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~  160 (218)
T 1nrj_B           81 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSL  160 (218)
T ss_dssp             GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccc
Confidence              89999999999 8889998888888886542   2257999999999999886664433332221   0011234567


Q ss_pred             EeeeccCC
Q 030848          163 EAVSGYDG  170 (170)
Q Consensus       163 ~~~Sa~~g  170 (170)
                      +++||++|
T Consensus       161 ~~~Sa~~~  168 (218)
T 1nrj_B          161 NEVERKIN  168 (218)
T ss_dssp             HC------
T ss_pred             cccccccc
Confidence            78887765

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.91  E-value=1.7e-23  Score=145.85  Aligned_cols=147  Identities=19%  Similarity=0.182  Sum_probs=94.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC----------CCcchh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----------QPGLRS   83 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~   83 (170)
                      ....++|+++|++|+|||||++++.+..  ...........+.....  ... +..+.+|||||          ++.+..
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~~~~~~~t~~~~~--~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~   94 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRK--NLARTSSKPGKTQTLNF--YII-NDELHFVDVPGYGFAKVSKSEREAWGR   94 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC---------------CCEEE--EEE-TTTEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCC--CccccCCCCCceeeEEE--EEE-CCcEEEEECCCCCccccCHHHHHHHHH
Confidence            4467999999999999999999998621  01111111112222222  222 34799999999          566666


Q ss_pred             hHHHHhhcc---CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccccccee
Q 030848           84 IWEKYYEEA---HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC  160 (170)
Q Consensus        84 ~~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  160 (170)
                      .+..+++.+   |++++|+|++++.++.... .+..+..    .+.|+++|+||+|+.+.....+..+.++........+
T Consensus        95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  169 (195)
T 1svi_A           95 MIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED  169 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred             HHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCC
Confidence            777777777   9999999999887776532 2222222    5789999999999987554433322222111123467


Q ss_pred             EEEeeeccCC
Q 030848          161 MFEAVSGYDG  170 (170)
Q Consensus       161 ~~~~~Sa~~g  170 (170)
                      +++++||++|
T Consensus       170 ~~~~~Sa~~~  179 (195)
T 1svi_A          170 ELILFSSETK  179 (195)
T ss_dssp             EEEECCTTTC
T ss_pred             ceEEEEccCC
Confidence            8999999986

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.90  E-value=2.6e-23  Score=141.70  Aligned_cols=137  Identities=23%  Similarity=0.259  Sum_probs=91.6

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccC--CcceeEEEEEecCeEEEEEEcCCCCcch------hhHHH
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVSNSKLVFWDLGGQPGLR------SIWEK   87 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~   87 (170)
                      +.++|+++|++|+|||||++++.+...      .....+  +.......+...+..+.+|||||++.+.      .....
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~------~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~   75 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENV------YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARD   75 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSS------SCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCe------eccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHH
Confidence            468999999999999999999976211      111112  2233344566677899999999988763      33455


Q ss_pred             Hhh--ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC-HHHHHhHhCccccccceeEEEe
Q 030848           88 YYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS-ADELARYLDLKKLDERVCMFEA  164 (170)
Q Consensus        88 ~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  164 (170)
                      +++  .++++++|+|+++.   +....|+..+..    .+.|+++++||+|+.+... ..+..+..+     ...+++++
T Consensus        76 ~~~~~~~~~~i~v~D~~~~---~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~  143 (165)
T 2wji_A           76 YIINEKPDLVVNIVDATAL---ERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEK-----ILGVKVVP  143 (165)
T ss_dssp             HHHHHCCSEEEEEEETTCH---HHHHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHH-----HHTSCEEE
T ss_pred             HHhcCCCCEEEEEecCCch---hHhHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHH-----HhCCCEEE
Confidence            554  89999999999874   334445555544    3689999999999865211 111222222     22357999


Q ss_pred             eeccCC
Q 030848          165 VSGYDG  170 (170)
Q Consensus       165 ~Sa~~g  170 (170)
                      +||++|
T Consensus       144 ~SA~~~  149 (165)
T 2wji_A          144 LSAAKK  149 (165)
T ss_dssp             CBGGGT
T ss_pred             EEcCCC
Confidence            999986

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.90  E-value=3.1e-23  Score=142.36  Aligned_cols=141  Identities=18%  Similarity=0.207  Sum_probs=94.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhh--------HH
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI--------WE   86 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~   86 (170)
                      ++..+|+++|++|+|||||++++.+......   ......+.......+...+..+.+|||||++.....        ..
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   78 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIV---TDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAW   78 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSCCSCC---CSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCccee---eCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHH
Confidence            3568999999999999999999986321111   111112233334456677788999999998653211        12


Q ss_pred             HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeee
Q 030848           87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVS  166 (170)
Q Consensus        87 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  166 (170)
                      .+++.+|++++|+|++++.+++. ..|+..+.... ..+.|+++|+||+|+.+...     +..     .....+++++|
T Consensus        79 ~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~-----~~~-----~~~~~~~~~~S  146 (172)
T 2gj8_A           79 QEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARL-PAKLPITVVRNKADITGETL-----GMS-----EVNGHALIRLS  146 (172)
T ss_dssp             HHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-CTTCCEEEEEECHHHHCCCC-----EEE-----EETTEEEEECC
T ss_pred             HHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-ccCCCEEEEEECccCCcchh-----hhh-----hccCCceEEEe
Confidence            35789999999999999888763 45555554432 25789999999999964311     111     12457899999


Q ss_pred             ccCC
Q 030848          167 GYDG  170 (170)
Q Consensus       167 a~~g  170 (170)
                      |++|
T Consensus       147 A~~g  150 (172)
T 2gj8_A          147 ARTG  150 (172)
T ss_dssp             TTTC
T ss_pred             CCCC
Confidence            9986

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.90  E-value=2.4e-23  Score=156.03  Aligned_cols=143  Identities=20%  Similarity=0.304  Sum_probs=106.0

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEEecC--eEEEEEEcCCCCcchhhHHHHhhc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      +..++|+++|.+|+|||||++++..      +.....+.+++..... .+...+  ..+.+|||||++.+...+..+++.
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~  226 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQ  226 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHH------SCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTT
T ss_pred             cceeEEEEECCCCCChHHHHHHHHh------CCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccC
Confidence            4669999999999999999999986      3333344455544332 233343  456699999999998888889999


Q ss_pred             cCEEEEEEeCCCcccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCcccc--------------CCHHHHHhHhCccccc
Q 030848           92 AHAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLD  156 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--------------~~~~~~~~~~~~~~~~  156 (170)
                      +|++++|+|++++.+++... .|+..+....  ++.|+++|+||+|+.+.              ...++..+.++     
T Consensus       227 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----  299 (332)
T 2wkq_A          227 TDVFLICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK-----  299 (332)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH-----
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHH-----
Confidence            99999999999999998887 5555554432  38899999999999653              23334444443     


Q ss_pred             cce-eEEEeeeccCC
Q 030848          157 ERV-CMFEAVSGYDG  170 (170)
Q Consensus       157 ~~~-~~~~~~Sa~~g  170 (170)
                      ... .++++|||++|
T Consensus       300 ~~~~~~~~~~Sa~~~  314 (332)
T 2wkq_A          300 EIGAVKYLECSALTQ  314 (332)
T ss_dssp             HTTCSEEEECCTTTC
T ss_pred             HcCCcEEEEecCCCC
Confidence            223 38999999986

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.90  E-value=2.9e-23  Score=140.20  Aligned_cols=138  Identities=24%  Similarity=0.306  Sum_probs=90.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc-------chhhHHHHhh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-------LRSIWEKYYE   90 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~   90 (170)
                      .||+++|++|+|||||++++.+......   ......+.......+...+..+.+|||||.+.       +...+..+++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   78 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVV---ADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALE   78 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC--------------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeec---cCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHH
Confidence            5899999999999999999987221111   11112233344445667788999999999776       3456667889


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      .+|++++|+|++++.+...  .++......   .+.|+++++||+|+.+..  ++..+..+     ....+++++||++|
T Consensus        79 ~~~~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~~~~~~~-----~~~~~~~~~Sa~~~  146 (161)
T 2dyk_A           79 DAEVVLFAVDGRAELTQAD--YEVAEYLRR---KGKPVILVATKVDDPKHE--LYLGPLYG-----LGFGDPIPTSSEHA  146 (161)
T ss_dssp             TCSEEEEEEESSSCCCHHH--HHHHHHHHH---HTCCEEEEEECCCSGGGG--GGCGGGGG-----GSSCSCEECBTTTT
T ss_pred             hCCEEEEEEECCCcccHhH--HHHHHHHHh---cCCCEEEEEECcccccch--HhHHHHHh-----CCCCCeEEEecccC
Confidence            9999999999998644322  233333322   478999999999997651  22222221     11226999999986

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.90  E-value=6.1e-23  Score=143.82  Aligned_cols=143  Identities=26%  Similarity=0.386  Sum_probs=106.6

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee--EEEEEecC--eEEEEEEcCCCCcchhhHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      ..++++++|++|+|||||++++.+      ........++.+..  ...+...+  ..+.+||++|++.+...+..+++.
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~------~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~   77 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTR------NEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRG   77 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHH------SCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTT
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhc
Confidence            468999999999999999999987      33333334454433  22344444  568899999999888878888899


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      ++++++|+|+++..+++....|+..+... ...+.|+++++||+|+.+  ....+++...+.     ...+.++++||++
T Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~-----~~~~~~~d~Sal~  151 (199)
T 2f9l_A           78 AVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE-----KNNLSFIETSALD  151 (199)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCTTT
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHHH-----HcCCeEEEEeCCC
Confidence            99999999999998888887777666443 225789999999999975  345556665555     4456899999987


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       152 ~  152 (199)
T 2f9l_A          152 S  152 (199)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.90  E-value=8.5e-23  Score=146.02  Aligned_cols=147  Identities=16%  Similarity=0.199  Sum_probs=94.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCC------Ccc---hhhH
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ------PGL---RSIW   85 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~------~~~---~~~~   85 (170)
                      ...++|+++|.+|+|||||++++.+......    .....+...........+..+.+|||||+      +..   ...+
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  102 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQ----SYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTI  102 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEE----CC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccC----CCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHH
Confidence            3568999999999999999999976211100    11112334444455667789999999998      331   1223


Q ss_pred             HHHhhccCEEEEEEeCCCcccHH--HHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC--CHH---HHHhHhCccccccc
Q 030848           86 EKYYEEAHAVVFVIDAACPSRFE--DSKTALEKVLRNEDLQGAPLLILANKQDLPDAV--SAD---ELARYLDLKKLDER  158 (170)
Q Consensus        86 ~~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~--~~~---~~~~~~~~~~~~~~  158 (170)
                      ..+++.+|++|+|+|++++.+++  ....++..+...  .++.|+++|+||+|+.+..  ..+   ...+....   ...
T Consensus       103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~  177 (228)
T 2qu8_A          103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDN---VKN  177 (228)
T ss_dssp             HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHH---CCS
T ss_pred             HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHh---cCC
Confidence            44568889999999999987764  233455555443  2478999999999997632  222   22222220   012


Q ss_pred             eeEEEeeeccCC
Q 030848          159 VCMFEAVSGYDG  170 (170)
Q Consensus       159 ~~~~~~~Sa~~g  170 (170)
                      .+++++|||++|
T Consensus       178 ~~~~~~~SA~~g  189 (228)
T 2qu8_A          178 PIKFSSFSTLTG  189 (228)
T ss_dssp             CEEEEECCTTTC
T ss_pred             CceEEEEecccC
Confidence            278999999986

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.89  E-value=1.7e-22  Score=140.38  Aligned_cols=147  Identities=20%  Similarity=0.195  Sum_probs=94.6

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC----------CCcch
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----------QPGLR   82 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~   82 (170)
                      .....++|+++|++|+|||||++++.+..  .. ........+....   ....+..+.+|||||          ++.+.
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~--~~-~~~~~~~~t~~~~---~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   92 (195)
T 3pqc_A           19 PPPLKGEVAFVGRSNVGKSSLLNALFNRK--IA-FVSKTPGKTRSIN---FYLVNSKYYFVDLPGYGYAKVSKKERMLWK   92 (195)
T ss_dssp             CCCTTCEEEEEEBTTSSHHHHHHHHHTSC--CS-CCCSSCCCCCCEE---EEEETTTEEEEECCCBSSSCCCHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHcCc--cc-cccCCCCCccCeE---EEEECCcEEEEECCCCccccCChhhHHHHH
Confidence            34566899999999999999999998722  11 1111111222222   222355789999999          55566


Q ss_pred             hhHHHHhhcc---CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccce
Q 030848           83 SIWEKYYEEA---HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERV  159 (170)
Q Consensus        83 ~~~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~  159 (170)
                      ..+..+++.+   +++++|+|+++..+.... .....+..    .+.|+++|+||+|+.++.......+.++........
T Consensus        93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  167 (195)
T 3pqc_A           93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDL-MMVEWMKS----LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE  167 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHhcCcCceEEEEEecCCCCCCHHHH-HHHHHHHH----cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC
Confidence            6666777665   999999999876544322 11122222    268999999999998765555444444322222345


Q ss_pred             eEEEeeeccCC
Q 030848          160 CMFEAVSGYDG  170 (170)
Q Consensus       160 ~~~~~~Sa~~g  170 (170)
                      ++++++||++|
T Consensus       168 ~~~~~~Sa~~~  178 (195)
T 3pqc_A          168 YTIIPTSSVTG  178 (195)
T ss_dssp             SCEEECCTTTC
T ss_pred             CceEEEecCCC
Confidence            78999999986

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.89  E-value=2.9e-22  Score=139.67  Aligned_cols=143  Identities=25%  Similarity=0.380  Sum_probs=107.7

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EEEEecC--eEEEEEEcCCCCcchhhHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      ..++++++|++|||||||++++.+      ........++++...  ..+...+  ..+.+||++|.+.+...+..+++.
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~------~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~  101 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTR------NEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRG  101 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHH------SCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTT
T ss_pred             cceEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhc
Confidence            458999999999999999999987      333334445555443  2344444  456779999999888888888899


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      ++++++|+|..+..+++.+..|+..+... ...+.|+++++||+|+.+  .....++.+.++     ...+.++++||++
T Consensus       102 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~-----~~~~~~ld~Sald  175 (191)
T 1oix_A          102 AVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE-----KNGLSFIETSALD  175 (191)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTT
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCC
Confidence            99999999999998888877777665432 225789999999999975  344555665555     4456889999987


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       176 ~  176 (191)
T 1oix_A          176 S  176 (191)
T ss_dssp             C
T ss_pred             C
Confidence            5

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.89  E-value=7.2e-23  Score=145.56  Aligned_cols=150  Identities=15%  Similarity=0.124  Sum_probs=94.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE-ecCeEEEEEEcCCC----------Ccch
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE-VSNSKLVFWDLGGQ----------PGLR   82 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~----------~~~~   82 (170)
                      ....++|+++|.+|+|||||+|++.+...  ..........+.......+. ..+..+.+|||||.          +.+.
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~  103 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKR--LAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE  103 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSS--SSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCc--ceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence            34678999999999999999999987210  00111111123333333333 34678999999994          2334


Q ss_pred             hhHHHHhhc---cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccc---
Q 030848           83 SIWEKYYEE---AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLD---  156 (170)
Q Consensus        83 ~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~---  156 (170)
                      .....+++.   +|++++|+|+++..+.. ...++..+..    .+.|+++|+||+|+.+.....+..+.+......   
T Consensus       104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~  178 (223)
T 4dhe_A          104 QLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD  178 (223)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh
Confidence            455566665   78899999998764422 2333333332    478999999999997644332222222211111   


Q ss_pred             ---cceeEEEeeeccCC
Q 030848          157 ---ERVCMFEAVSGYDG  170 (170)
Q Consensus       157 ---~~~~~~~~~Sa~~g  170 (170)
                         ...++++++||++|
T Consensus       179 ~~~~~~~~~~~~SA~~g  195 (223)
T 4dhe_A          179 AGYAGKLTVQLFSALKR  195 (223)
T ss_dssp             HTCCSCEEEEEEBTTTT
T ss_pred             cccCCCCeEEEeecCCC
Confidence               35689999999986

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.89  E-value=1.1e-23  Score=145.97  Aligned_cols=144  Identities=18%  Similarity=0.158  Sum_probs=91.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC-----------CCcchhhHH
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG-----------QPGLRSIWE   86 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~   86 (170)
                      +||+++|++|+|||||++++.+.      .......+++......+...  .+.+|||||           ++.+...+.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~------~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   73 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGK------KVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIV   73 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSC------CCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCc------CCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHH
Confidence            68999999999999999999872      22222333333333333333  789999999           556666677


Q ss_pred             HHhhc-cCEEEEEEeCCCcccHHHH-HHHHHH--------HHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccc
Q 030848           87 KYYEE-AHAVVFVIDAACPSRFEDS-KTALEK--------VLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLD  156 (170)
Q Consensus        87 ~~~~~-~~~~i~v~d~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~  156 (170)
                      .+++. ++++++|+++.+..++... ..|...        +.......+.|+++++||+|+.+.. .++..+..+..+..
T Consensus        74 ~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~  152 (190)
T 2cxx_A           74 HFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVP  152 (190)
T ss_dssp             HHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCC
T ss_pred             HHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhh
Confidence            77776 7766666666666677665 333221        2222222578999999999997643 23333333322221


Q ss_pred             --cceeEEEeeeccCC
Q 030848          157 --ERVCMFEAVSGYDG  170 (170)
Q Consensus       157 --~~~~~~~~~Sa~~g  170 (170)
                        ....+++++||++|
T Consensus       153 ~~~~~~~~~~~Sa~~~  168 (190)
T 2cxx_A          153 LSEIDKVFIPISAKFG  168 (190)
T ss_dssp             GGGHHHHEEECCTTTC
T ss_pred             hhccCCcEEEEecCCC
Confidence              11356899999986

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.88  E-value=3e-22  Score=138.72  Aligned_cols=138  Identities=22%  Similarity=0.262  Sum_probs=94.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccC--CcceeEEEEEecCeEEEEEEcCCCCcch------hhHH
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVSNSKLVFWDLGGQPGLR------SIWE   86 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~   86 (170)
                      .+.++|+++|++|+|||||++++.+..      ......+  +.......+...+..+.+|||||++.+.      ..+.
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   78 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTGEN------VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIAR   78 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHTTC------EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC------ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHH
Confidence            356899999999999999999998621      1111122  2233444566778999999999988763      3455


Q ss_pred             HHhh--ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC-HHHHHhHhCccccccceeEEE
Q 030848           87 KYYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS-ADELARYLDLKKLDERVCMFE  163 (170)
Q Consensus        87 ~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~  163 (170)
                      .+++  .++++++|+|+++   ++....|+..+..    .+.|+++++||+|+.+... ..+..+..+     ...++++
T Consensus        79 ~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~  146 (188)
T 2wjg_A           79 DYIINEKPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEK-----ILGVKVV  146 (188)
T ss_dssp             HHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHH-----HHTSCEE
T ss_pred             HHHhccCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHH-----HhCCCeE
Confidence            5654  4999999999875   4556666666654    4789999999999975321 112222222     2235799


Q ss_pred             eeeccCC
Q 030848          164 AVSGYDG  170 (170)
Q Consensus       164 ~~Sa~~g  170 (170)
                      ++||++|
T Consensus       147 ~~Sa~~~  153 (188)
T 2wjg_A          147 PLSAAKK  153 (188)
T ss_dssp             ECBGGGT
T ss_pred             EEEecCC
Confidence            9999986

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.88  E-value=2.2e-21  Score=144.69  Aligned_cols=148  Identities=22%  Similarity=0.233  Sum_probs=102.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec-CeEEEEEEcCCCCcc----------h
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPGL----------R   82 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~----------~   82 (170)
                      ..+.-.|+++|.+|+|||||+|++.+......   ......|........... +.++.+|||||....          .
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~---s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSII---SPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCC---CSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhCCCcccc---CCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHH
Confidence            45667899999999999999999987321111   111222333333345566 889999999997443          3


Q ss_pred             hhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc-ccCCHHHHHhHhCccccccceeE
Q 030848           83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP-DAVSADELARYLDLKKLDERVCM  161 (170)
Q Consensus        83 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~  161 (170)
                      .....+++.+|++++|+|+++..+.+....|+..+..    .+.|+++|+||+|+. +.....+..+.+....  ....+
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~--~~~~~  157 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH--PELTE  157 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC--TTCCC
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc--cCCCe
Confidence            5667788999999999999998887776555555543    478999999999997 4444444333333111  13467


Q ss_pred             EEeeeccCC
Q 030848          162 FEAVSGYDG  170 (170)
Q Consensus       162 ~~~~Sa~~g  170 (170)
                      ++++||++|
T Consensus       158 i~~vSA~~g  166 (308)
T 3iev_A          158 IVPISALKG  166 (308)
T ss_dssp             EEECBTTTT
T ss_pred             EEEEeCCCC
Confidence            999999986

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.4e-22  Score=141.05  Aligned_cols=129  Identities=22%  Similarity=0.317  Sum_probs=94.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhc---
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE---   91 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~---   91 (170)
                      ...++|+++|++|+|||||++++.+...  .. ......++...     +.....+.+|||||++.+...+..+++.   
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~--~~-~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~  117 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSV--RP-TVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK  117 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSC--C------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC--Cc-ccccCCCceee-----eecCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence            5678999999999999999999987211  11 11122222222     2256789999999998887777777665   


Q ss_pred             -cCEEEEEEeCC-CcccHHHHHHHHHHHHcCC---CCCCCcEEEEeeCCCccccCCHHHHHhHhC
Q 030848           92 -AHAVVFVIDAA-CPSRFEDSKTALEKVLRNE---DLQGAPLLILANKQDLPDAVSADELARYLD  151 (170)
Q Consensus        92 -~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~  151 (170)
                       +|++|+|+|++ +..++.....|+..+....   ...+.|+++|+||+|+.+....++..+.+.
T Consensus       118 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~  182 (193)
T 2ged_A          118 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALE  182 (193)
T ss_dssp             GEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred             cCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHH
Confidence             89999999999 8888988888888876542   225789999999999998777777766664

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.87  E-value=2.8e-22  Score=159.53  Aligned_cols=141  Identities=21%  Similarity=0.341  Sum_probs=100.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE------------ecCeEEEEEEcCCCCcc
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE------------VSNSKLVFWDLGGQPGL   81 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~G~~~~   81 (170)
                      ....+||+++|.+|+|||||++++.+      ........+|++.......            ..+..+.+||+||++.+
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~------~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~  111 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIG------ETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIM  111 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTT
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHH
Confidence            45679999999999999999999986      3333445566666554321            22578999999999999


Q ss_pred             hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccce
Q 030848           82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERV  159 (170)
Q Consensus        82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~  159 (170)
                      ......+++.+|++|+|+|+++.   +....|...+....  ++.|+++|+||+|+.+  ....++..+.+.     ...
T Consensus       112 ~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~  181 (535)
T 3dpu_A          112 HASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFP-----AIE  181 (535)
T ss_dssp             TTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCG-----GGT
T ss_pred             HHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHH-----hcC
Confidence            99889999999999999998865   44556666665543  4689999999999976  345666666666     444


Q ss_pred             eEEEeeeccCC
Q 030848          160 CMFEAVSGYDG  170 (170)
Q Consensus       160 ~~~~~~Sa~~g  170 (170)
                      ++++++||++|
T Consensus       182 ~~~~~vSA~~g  192 (535)
T 3dpu_A          182 NRFHRISCKNG  192 (535)
T ss_dssp             TCEEECCC---
T ss_pred             CceEEEecCcc
Confidence            57999999986

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.87  E-value=3.6e-21  Score=142.98  Aligned_cols=143  Identities=24%  Similarity=0.221  Sum_probs=93.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc--------chhhHHH
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSIWEK   87 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~   87 (170)
                      +..+|+++|.+|+|||||+|++.+.........+   ..|...........+.++.+|||||...        +......
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~---~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~   82 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRP---QTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYE   82 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSS---CCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCC---CceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence            4467999999999999999999873221111111   1111222223456788999999999765        4555667


Q ss_pred             HhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC-HHHHHhHhCccccccceeEEEeee
Q 030848           88 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS-ADELARYLDLKKLDERVCMFEAVS  166 (170)
Q Consensus        88 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S  166 (170)
                      +++.+|++++|+|++++.+..  ..++...+.... ++.|+++++||+|+.+... ..+..+.+      ....+++++|
T Consensus        83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~iS  153 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL------LPEAEPRMLS  153 (301)
T ss_dssp             HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT------STTSEEEECC
T ss_pred             HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh------cCcCcEEEEe
Confidence            789999999999998875543  234433333221 4789999999999975432 22222222      2234699999


Q ss_pred             ccCC
Q 030848          167 GYDG  170 (170)
Q Consensus       167 a~~g  170 (170)
                      |++|
T Consensus       154 A~~g  157 (301)
T 1wf3_A          154 ALDE  157 (301)
T ss_dssp             TTCH
T ss_pred             CCCC
Confidence            9875

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.87  E-value=2.5e-23  Score=151.37  Aligned_cols=150  Identities=11%  Similarity=0.105  Sum_probs=97.3

Q ss_pred             cCceeEEEEEcCC---------CCChHHHHHHHHhhcccCCCCCCCcccCCc-ceeE------------------EEEEe
Q 030848           14 TKTEFHVLILGID---------KAGKTTLLEKLKSVYSNVEGLPPDRIVPTV-GLNI------------------GRIEV   65 (170)
Q Consensus        14 ~~~~~~i~vvG~~---------~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~-~~~~------------------~~~~~   65 (170)
                      ....+||+++|.+         |+|||||++++.+...   ........+++ +..+                  ..++.
T Consensus        16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~---~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   92 (255)
T 3c5h_A           16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSA---DEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC   92 (255)
T ss_dssp             CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCST---TTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred             CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccC---CccccccCCcccccccceeEeecccccccccccccccCC
Confidence            3466999999999         9999999999976110   01111111221 1110                  01334


Q ss_pred             cCeEEEEEE-----------------------cCCCCcchhhHHHHhh---------------------ccCEEEEEEeC
Q 030848           66 SNSKLVFWD-----------------------LGGQPGLRSIWEKYYE---------------------EAHAVVFVIDA  101 (170)
Q Consensus        66 ~~~~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~~~~i~v~d~  101 (170)
                      ....+.+||                       ++|++.+...+..+++                     ++|++|+|+|+
T Consensus        93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~  172 (255)
T 3c5h_A           93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV  172 (255)
T ss_dssp             ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred             cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence            567899999                       5566666665666665                     79999999999


Q ss_pred             CCc--ccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848          102 ACP--SRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       102 ~~~--~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +++  .+++.+..|+..+.......+.|+++|+||+|+.+....++..+..+.    ...++++++||++|
T Consensus       173 t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~----~~~~~~~e~SAk~g  239 (255)
T 3c5h_A          173 SRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALS----KKNLQVVETSARSN  239 (255)
T ss_dssp             BC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHT----SSSCCEEECBTTTT
T ss_pred             CCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHh----cCCCeEEEEECCCC
Confidence            998  899999988888865433357899999999999653333344444431    13568999999986

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.87  E-value=2.1e-22  Score=158.44  Aligned_cols=154  Identities=19%  Similarity=0.179  Sum_probs=102.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCC-------------------------CCC--CcccCCcceeEEEEEec
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG-------------------------LPP--DRIVPTVGLNIGRIEVS   66 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~-------------------------~~~--~~~~~~~~~~~~~~~~~   66 (170)
                      .++.+||+++|.+++|||||+++|.........                         ...  .....|+......++..
T Consensus        30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~  109 (483)
T 3p26_A           30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  109 (483)
T ss_dssp             SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence            578899999999999999999999653111100                         000  01123555556667778


Q ss_pred             CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHH------HHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-
Q 030848           67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFE------DSKTALEKVLRNEDLQGAPLLILANKQDLPD-  139 (170)
Q Consensus        67 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-  139 (170)
                      +..+.+|||||++.+......+++.+|++|+|+|+++..++.      ...+..... ...  ...|+++++||+|+.+ 
T Consensus       110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~-~~~--~~~~iIvviNK~Dl~~~  186 (483)
T 3p26_A          110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SSL--GIHNLIIAMNKMDNVDW  186 (483)
T ss_dssp             SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHH-HHT--TCCCEEEEEECGGGGTT
T ss_pred             CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHH-HHc--CCCcEEEEEECcCcccc
Confidence            899999999999999999999999999999999999864432      222222222 211  2357999999999976 


Q ss_pred             -cCCHHHHH----hHhCccccccceeEEEeeeccCC
Q 030848          140 -AVSADELA----RYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       140 -~~~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                       +...++..    +.+...+.....++++++||++|
T Consensus       187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g  222 (483)
T 3p26_A          187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSG  222 (483)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSC
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecC
Confidence             22223333    33333334445789999999987

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.87  E-value=9e-21  Score=147.37  Aligned_cols=157  Identities=14%  Similarity=0.106  Sum_probs=103.5

Q ss_pred             hhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCC--------------CCCCc---------------ccCCcceeE
Q 030848           10 KYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG--------------LPPDR---------------IVPTVGLNI   60 (170)
Q Consensus        10 ~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~--------------~~~~~---------------~~~~~~~~~   60 (170)
                      .....+..++|+++|++++|||||++++.........              +....               ...|+....
T Consensus        17 ~~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~   96 (434)
T 1zun_B           17 GQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAY   96 (434)
T ss_dssp             CSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEE
T ss_pred             hhcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeee
Confidence            3334466799999999999999999999763211110              00000               112444445


Q ss_pred             EEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030848           61 GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA  140 (170)
Q Consensus        61 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~  140 (170)
                      ..+...+..+.+|||||++.+...+..+++.+|++|+|+|+++....+ ..+++......   ...|+++++||+|+.+.
T Consensus        97 ~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~---~~~~iIvviNK~Dl~~~  172 (434)
T 1zun_B           97 RYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL---GIKHIVVAINKMDLNGF  172 (434)
T ss_dssp             EEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCEEEEEEECTTTTTS
T ss_pred             eEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEEcCcCCcc
Confidence            566677889999999999999888888899999999999999865433 33333333221   23469999999999763


Q ss_pred             CC------HHHHHhHhCccccccceeEEEeeeccCC
Q 030848          141 VS------ADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       141 ~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ..      .+++.+.++..+.....++++++||++|
T Consensus       173 ~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g  208 (434)
T 1zun_B          173 DERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKG  208 (434)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTC
T ss_pred             cHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCC
Confidence            21      1223333332222234589999999987

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.87  E-value=1.4e-21  Score=142.39  Aligned_cols=137  Identities=22%  Similarity=0.211  Sum_probs=94.4

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh------hHHHH
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS------IWEKY   88 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~   88 (170)
                      .+.++|+++|++|+|||||+|++.+...... .   ....|.......+...+..+.+|||||...+..      ....+
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~-~---~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~   78 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVA-N---WPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDY   78 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEE-E---CTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCccc-C---CCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHH
Confidence            4578999999999999999999987221111 0   112233444445667788999999999876643      22444


Q ss_pred             h--hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc----CCHHHHHhHhCccccccceeEE
Q 030848           89 Y--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA----VSADELARYLDLKKLDERVCMF  162 (170)
Q Consensus        89 ~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~  162 (170)
                      +  ..+|++++|+|+++.++   ...++..+..    .+.|+++++||+|+.+.    ....++.+.        .++++
T Consensus        79 ~~~~~~d~ii~V~D~t~~~~---~~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~--------lg~~v  143 (258)
T 3a1s_A           79 LLKGDADLVILVADSVNPEQ---SLYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKH--------LGIPV  143 (258)
T ss_dssp             HHHSCCSEEEEEEETTSCHH---HHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHH--------HCSCE
T ss_pred             HhhcCCCEEEEEeCCCchhh---HHHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHH--------cCCCE
Confidence            4  58999999999998643   3445555544    37899999999998652    122333332        23689


Q ss_pred             EeeeccCC
Q 030848          163 EAVSGYDG  170 (170)
Q Consensus       163 ~~~Sa~~g  170 (170)
                      +++||++|
T Consensus       144 i~~SA~~g  151 (258)
T 3a1s_A          144 VFTSSVTG  151 (258)
T ss_dssp             EECCTTTC
T ss_pred             EEEEeeCC
Confidence            99999986

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.86  E-value=3e-21  Score=148.76  Aligned_cols=155  Identities=17%  Similarity=0.112  Sum_probs=101.4

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC-------------CCcccCCc---ceeEEEEEecCeEEEEEEcC
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP-------------PDRIVPTV---GLNIGRIEVSNSKLVFWDLG   76 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~-------------~~~~~~~~---~~~~~~~~~~~~~~~i~D~~   76 (170)
                      ..++.++|+++|++++|||||++++.+.........             ........   .............+.+||||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            456789999999999999999999976211110000             00000000   00000001223679999999


Q ss_pred             CCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC--ccc
Q 030848           77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD--LKK  154 (170)
Q Consensus        77 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~--~~~  154 (170)
                      |++.+......+++.+|++|+|+|++++.++....+++..+...   ...|+++++||+|+.+.....+..+.+.  ...
T Consensus        84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~  160 (403)
T 3sjy_A           84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG  160 (403)
T ss_dssp             CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999887666666666555332   2358999999999986443332222222  111


Q ss_pred             cccceeEEEeeeccCC
Q 030848          155 LDERVCMFEAVSGYDG  170 (170)
Q Consensus       155 ~~~~~~~~~~~Sa~~g  170 (170)
                      .....++++++||++|
T Consensus       161 ~~~~~~~ii~vSA~~g  176 (403)
T 3sjy_A          161 TWAENVPIIPVSALHK  176 (403)
T ss_dssp             STTTTCCEEECBTTTT
T ss_pred             hCCCCCEEEEEECCCC
Confidence            2234678999999986

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.86  E-value=3.5e-21  Score=149.74  Aligned_cols=154  Identities=20%  Similarity=0.214  Sum_probs=102.2

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCC-------------------------CCCc--ccCCcceeEEEEEe
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL-------------------------PPDR--IVPTVGLNIGRIEV   65 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~-------------------------~~~~--~~~~~~~~~~~~~~   65 (170)
                      ..+..++|+++|.+++|||||+++|..........                         ...+  ...|+......+..
T Consensus        13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~   92 (439)
T 3j2k_7           13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET   92 (439)
T ss_pred             CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence            34678999999999999999999995532211110                         0111  12345555556777


Q ss_pred             cCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccH------HHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcc
Q 030848           66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF------EDSKTALEKVLRNEDLQGAP-LLILANKQDLP  138 (170)
Q Consensus        66 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~-ii~v~nK~D~~  138 (170)
                      .+..+.+|||||++.+...+..+++.+|++|+|+|+++....      ....+.+.....    .+.| +++++||+|+.
T Consensus        93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~  168 (439)
T 3j2k_7           93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDP  168 (439)
T ss_pred             CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCc
Confidence            888999999999999998888899999999999999876421      122222222222    2445 99999999996


Q ss_pred             ccC----CH----HHHHhHhCcccccc-ceeEEEeeeccCC
Q 030848          139 DAV----SA----DELARYLDLKKLDE-RVCMFEAVSGYDG  170 (170)
Q Consensus       139 ~~~----~~----~~~~~~~~~~~~~~-~~~~~~~~Sa~~g  170 (170)
                      ...    ..    +++.+.++..++.. ..++++++||++|
T Consensus       169 ~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G  209 (439)
T 3j2k_7          169 TVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTG  209 (439)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCC
Confidence            422    12    22333333233322 3679999999987

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.86  E-value=3.1e-22  Score=146.95  Aligned_cols=136  Identities=24%  Similarity=0.322  Sum_probs=91.4

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcch----------hhH
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR----------SIW   85 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~~~   85 (170)
                      ++++|+++|.+|+|||||+|++.+......    .....|.......+...+..+.+|||||...+.          ...
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~----~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~   77 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVG----NWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIA   77 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEE----ECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccC----CCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHH
Confidence            468999999999999999999987321111    111123334444566678899999999976654          122


Q ss_pred             HHHh--hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC----CHHHHHhHhCccccccce
Q 030848           86 EKYY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV----SADELARYLDLKKLDERV  159 (170)
Q Consensus        86 ~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~----~~~~~~~~~~~~~~~~~~  159 (170)
                      ..++  +.+|++++|+|+++.+..   ..+...+..    .+.|+++++||+|+.+..    ..+++.+.+        +
T Consensus        78 ~~~~~~~~~d~ii~VvD~~~~~~~---~~~~~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l--------g  142 (274)
T 3i8s_A           78 CHYILSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIEIDALSARL--------G  142 (274)
T ss_dssp             HHHHHHTCCSEEEEEEEGGGHHHH---HHHHHHHHH----HTCCEEEEEECHHHHHHTTEEECHHHHHHHH--------T
T ss_pred             HHHHhhcCCCEEEEEecCCChHHH---HHHHHHHHh----cCCCEEEEEECccchhhhhHHHHHHHHHHhc--------C
Confidence            2332  689999999999875433   333333433    278999999999987532    233333332        3


Q ss_pred             eEEEeeeccCC
Q 030848          160 CMFEAVSGYDG  170 (170)
Q Consensus       160 ~~~~~~Sa~~g  170 (170)
                      ++++++||++|
T Consensus       143 ~~~i~~SA~~g  153 (274)
T 3i8s_A          143 CPVIPLVSTRG  153 (274)
T ss_dssp             SCEEECCCGGG
T ss_pred             CCEEEEEcCCC
Confidence            58999999986

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.86  E-value=1.4e-22  Score=147.36  Aligned_cols=134  Identities=23%  Similarity=0.304  Sum_probs=91.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh----------hHHH
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS----------IWEK   87 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~   87 (170)
                      .+|+++|.+|+|||||+|++.+......    .....|.......+...+..+.+|||||...+..          ....
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~----~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~   77 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVG----NWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQ   77 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEE----ECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCcc----CCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHH
Confidence            4799999999999999999987321111    1112233344556777788999999999766543          4455


Q ss_pred             Hh--hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC----CHHHHHhHhCccccccceeE
Q 030848           88 YY--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV----SADELARYLDLKKLDERVCM  161 (170)
Q Consensus        88 ~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~  161 (170)
                      ++  +.+|++|+|+|+++.++.   ..+...+..    .+.|+++++||+|+.+..    ..+.+.+.+        +++
T Consensus        78 ~~~~~~~d~vi~VvDas~~~~~---~~l~~~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~  142 (256)
T 3iby_A           78 SVIDLEYDCIINVIDACHLERH---LYLTSQLFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLL--------GCS  142 (256)
T ss_dssp             HHHHSCCSEEEEEEEGGGHHHH---HHHHHHHTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHH--------CSC
T ss_pred             HHhhCCCCEEEEEeeCCCchhH---HHHHHHHHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHc--------CCC
Confidence            66  789999999999985333   333333332    378999999999987632    233333332        468


Q ss_pred             EEeeeccCC
Q 030848          162 FEAVSGYDG  170 (170)
Q Consensus       162 ~~~~Sa~~g  170 (170)
                      ++++||++|
T Consensus       143 vi~~SA~~g  151 (256)
T 3iby_A          143 VIPIQAHKN  151 (256)
T ss_dssp             EEECBGGGT
T ss_pred             EEEEECCCC
Confidence            999999986

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.86  E-value=1.3e-21  Score=152.23  Aligned_cols=147  Identities=14%  Similarity=0.091  Sum_probs=98.2

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCC----------CcchhhH
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ----------PGLRSIW   85 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~   85 (170)
                      ..++|+++|.+|+|||||+|++.+........   ....|.......+...+..+.+|||||+          +.+....
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~---~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN---VAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC------------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecC---CCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHH
Confidence            45899999999999999999998632111111   1111222223356667788999999996          3343333


Q ss_pred             H-HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC--HHHHHhHhCccccccceeEE
Q 030848           86 E-KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS--ADELARYLDLKKLDERVCMF  162 (170)
Q Consensus        86 ~-~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~  162 (170)
                      . .+++.+|++|+|+|++++.+++.. .+...+..    .+.|+++++||+|+.+...  .++..+.+.........+++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~  325 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI  325 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCE
Confidence            3 477899999999999998887765 45444433    4789999999999986433  34444444322222345789


Q ss_pred             EeeeccCC
Q 030848          163 EAVSGYDG  170 (170)
Q Consensus       163 ~~~Sa~~g  170 (170)
                      +++||++|
T Consensus       326 ~~~SA~tg  333 (436)
T 2hjg_A          326 LFMSALTK  333 (436)
T ss_dssp             EECCTTTC
T ss_pred             EEEecccC
Confidence            99999987

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.86  E-value=2.5e-21  Score=150.47  Aligned_cols=153  Identities=18%  Similarity=0.239  Sum_probs=99.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC---------------------------CCcccCCcceeEEEEEec
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP---------------------------PDRIVPTVGLNIGRIEVS   66 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~   66 (170)
                      .++.++|+++|+.++|||||++++...........                           ......|+......+...
T Consensus         3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~   82 (435)
T 1jny_A            3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK   82 (435)
T ss_dssp             -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred             CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence            46789999999999999999999975321111000                           001123444444567777


Q ss_pred             CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHH-------HHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDS-------KTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        67 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      +..+.+|||||++.+...+..+++.+|++|+|+|+++ .+++..       .+.+......   .-.|+++++||+|+.+
T Consensus        83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~  158 (435)
T 1jny_A           83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTE  158 (435)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSS
T ss_pred             CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc---CCCeEEEEEEcccCCC
Confidence            8899999999999999888899999999999999998 555532       2222222111   2346899999999976


Q ss_pred             cC----C----HHHHHhHhCccccccceeEEEeeeccCC
Q 030848          140 AV----S----ADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       140 ~~----~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ..    .    .+++.+.++..++....++++++||++|
T Consensus       159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g  197 (435)
T 1jny_A          159 PPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSG  197 (435)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTT
T ss_pred             ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccC
Confidence            32    1    2334444443333334589999999986

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.86  E-value=6e-21  Score=144.33  Aligned_cols=117  Identities=21%  Similarity=0.376  Sum_probs=96.4

Q ss_pred             CCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCC----------cccHHHHHHHHHHHHcCCCC
Q 030848           54 PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALEKVLRNEDL  123 (170)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~  123 (170)
                      +|+++....+...+..+.+|||+|++.++..|..++++++++|+|+|+++          ..++++...|+..+......
T Consensus       179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~  258 (353)
T 1cip_A          179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF  258 (353)
T ss_dssp             CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred             ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence            56777777788889999999999999999999999999999999999998          56799999999999887666


Q ss_pred             CCCcEEEEeeCCCccc-----------------cCCHHHHHhHhCccc--c----ccceeEEEeeeccCC
Q 030848          124 QGAPLLILANKQDLPD-----------------AVSADELARYLDLKK--L----DERVCMFEAVSGYDG  170 (170)
Q Consensus       124 ~~~~ii~v~nK~D~~~-----------------~~~~~~~~~~~~~~~--~----~~~~~~~~~~Sa~~g  170 (170)
                      .+.|+++++||+|+..                 +.+.++..+.+....  +    ....+.+++|||++|
T Consensus       259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~  328 (353)
T 1cip_A          259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT  328 (353)
T ss_dssp             TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCH
T ss_pred             cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCc
Confidence            7899999999999963                 245666666664210  1    145789999999975

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.86  E-value=1.9e-21  Score=142.56  Aligned_cols=134  Identities=23%  Similarity=0.277  Sum_probs=90.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcch------hhHHHHhh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR------SIWEKYYE   90 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~   90 (170)
                      .++|+++|++|+|||||+|++.+..... +.   ....|.......+.. +..+.+|||||+..+.      .....++.
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v-~~---~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~   77 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRV-GN---WPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLL   77 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCC-CS---SSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcc-cC---CCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHh
Confidence            5799999999999999999998732111 11   111222222333444 6789999999988764      34455665


Q ss_pred             --ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc----CCHHHHHhHhCccccccceeEEEe
Q 030848           91 --EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA----VSADELARYLDLKKLDERVCMFEA  164 (170)
Q Consensus        91 --~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  164 (170)
                        .+|++++|+|+++.+   ....|...+..    .+.|+++++||+|+...    ...+++.+.+        ++++++
T Consensus        78 ~~~~d~vi~V~D~t~~e---~~~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~vi~  142 (272)
T 3b1v_A           78 SQRADSILNVVDATNLE---RNLYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHL--------GVPVVA  142 (272)
T ss_dssp             TTCCSEEEEEEEGGGHH---HHHHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEE
T ss_pred             cCCCCEEEEEecCCchH---hHHHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHc--------CCCEEE
Confidence              699999999998753   34445555544    47899999999998652    1223333322        358999


Q ss_pred             eeccCC
Q 030848          165 VSGYDG  170 (170)
Q Consensus       165 ~Sa~~g  170 (170)
                      +||++|
T Consensus       143 ~SA~~g  148 (272)
T 3b1v_A          143 TSALKQ  148 (272)
T ss_dssp             CBTTTT
T ss_pred             EEccCC
Confidence            999986

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.85  E-value=1.2e-20  Score=140.97  Aligned_cols=119  Identities=20%  Similarity=0.370  Sum_probs=97.4

Q ss_pred             ccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCC----------CcccHHHHHHHHHHHHcCC
Q 030848           52 IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA----------CPSRFEDSKTALEKVLRNE  121 (170)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~  121 (170)
                      ..+|+++....++..+..+.+|||+|++.++..|..++++++++|+|+|++          +..++++...++..+....
T Consensus       151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~  230 (327)
T 3ohm_A          151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP  230 (327)
T ss_dssp             CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred             cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence            346788888888899999999999999999999999999999999999554          6778899999999998877


Q ss_pred             CCCCCcEEEEeeCCCccc------------------cCCHHHHHhHhC-----ccccccceeEEEeeeccCC
Q 030848          122 DLQGAPLLILANKQDLPD------------------AVSADELARYLD-----LKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       122 ~~~~~~ii~v~nK~D~~~------------------~~~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ...+.|+++++||+|+.+                  ..+.++..+++.     ........+.+++|||+.+
T Consensus       231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~  302 (327)
T 3ohm_A          231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDT  302 (327)
T ss_dssp             GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCH
T ss_pred             ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecC
Confidence            767899999999999965                  245666666643     1112346788999999863

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.85  E-value=3.7e-21  Score=150.63  Aligned_cols=144  Identities=18%  Similarity=0.125  Sum_probs=83.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHH--------
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWE--------   86 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~--------   86 (170)
                      +..++|+++|.+|+|||||+|++.+......   ......|.......+...+..+.+|||||.+.+...+.        
T Consensus       231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v---s~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~  307 (476)
T 3gee_A          231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIV---SHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSR  307 (476)
T ss_dssp             HHCEEEEEECCTTSSHHHHHHHCC---------------------CEEEEETTEEEEEEC--------------------
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCccc---CCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHH
Confidence            4568999999999999999999976211111   11111233333445777889999999999876554332        


Q ss_pred             HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeee
Q 030848           87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVS  166 (170)
Q Consensus        87 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  166 (170)
                      .+++.+|++|+|+|++++.+++....+. .++...  .+.|+++|+||+|+.+....+.  +.+...    ...+++++|
T Consensus       308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~-~~l~~l--~~~piIvV~NK~Dl~~~~~~~~--~~l~~~----~~~~~i~vS  378 (476)
T 3gee_A          308 MKMAEADLILYLLDLGTERLDDELTEIR-ELKAAH--PAAKFLTVANKLDRAANADALI--RAIADG----TGTEVIGIS  378 (476)
T ss_dssp             CCCSSCSEEEEEEETTTCSSGGGHHHHH-HHHHHC--TTSEEEEEEECTTSCTTTHHHH--HHHHHH----HTSCEEECB
T ss_pred             hhcccCCEEEEEEECCCCcchhhhHHHH-HHHHhc--CCCCEEEEEECcCCCCccchhH--HHHHhc----CCCceEEEE
Confidence            3568899999999999988875322222 222222  2789999999999987544322  112211    125799999


Q ss_pred             ccCC
Q 030848          167 GYDG  170 (170)
Q Consensus       167 a~~g  170 (170)
                      |++|
T Consensus       379 Aktg  382 (476)
T 3gee_A          379 ALNG  382 (476)
T ss_dssp             TTTT
T ss_pred             ECCC
Confidence            9986

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.85  E-value=1.6e-21  Score=146.95  Aligned_cols=143  Identities=24%  Similarity=0.310  Sum_probs=97.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC-eEEEEEEcCCCC----cchhh---HHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQP----GLRSI---WEKYY   89 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~----~~~~~---~~~~~   89 (170)
                      .+|+++|.+++|||||+|++.+...........    |.......+...+ ..+.+|||||..    ....+   +...+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ft----Tl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i  234 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFT----TLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI  234 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSS----CCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCcc----ccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHH
Confidence            368899999999999999997643322222222    3333334466654 789999999942    22223   33334


Q ss_pred             hccCEEEEEEeCCC---cccHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCccccC-CHHHHHhHhCccccccceeEEEe
Q 030848           90 EEAHAVVFVIDAAC---PSRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPDAV-SADELARYLDLKKLDERVCMFEA  164 (170)
Q Consensus        90 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~-~~~~~ii~v~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  164 (170)
                      .+++++|+|+|+++   ..+++....+..++..+.. ..+.|+++|+||+|+.... ..+++.+.+.      ..+++++
T Consensus       235 ~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~------~~~~v~~  308 (342)
T 1lnz_A          235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT------DDYPVFP  308 (342)
T ss_dssp             HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC------SCCCBCC
T ss_pred             HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhh------cCCCEEE
Confidence            56999999999998   7788888888888866532 3578999999999997532 1222222222      1167999


Q ss_pred             eeccCC
Q 030848          165 VSGYDG  170 (170)
Q Consensus       165 ~Sa~~g  170 (170)
                      +||++|
T Consensus       309 iSA~tg  314 (342)
T 1lnz_A          309 ISAVTR  314 (342)
T ss_dssp             CSSCCS
T ss_pred             EECCCC
Confidence            999976

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.85  E-value=8.8e-21  Score=148.26  Aligned_cols=148  Identities=14%  Similarity=0.103  Sum_probs=99.6

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC----------CCcchhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----------QPGLRSI   84 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~   84 (170)
                      ...++|+++|.+|+|||||+|++.+..........   ..|.......+...+..+.+|||||          ++.+...
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~---gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVA---GTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC---------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCC---CeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHH
Confidence            35689999999999999999999862211111111   1122222234667778999999999          5666655


Q ss_pred             HH-HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeE
Q 030848           85 WE-KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCM  161 (170)
Q Consensus        85 ~~-~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~  161 (170)
                      .. .+++.+|++|+|+|+++..+.+ ...++..+..    .+.|+++|+||+|+.+.  ...++..+.++........++
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAP  344 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSC
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCC
Confidence            44 4779999999999998765433 3334444433    46899999999999863  344566666553333334578


Q ss_pred             EEeeeccCC
Q 030848          162 FEAVSGYDG  170 (170)
Q Consensus       162 ~~~~Sa~~g  170 (170)
                      ++++||++|
T Consensus       345 ~~~~SA~~g  353 (456)
T 4dcu_A          345 ILFMSALTK  353 (456)
T ss_dssp             EEECCTTTC
T ss_pred             EEEEcCCCC
Confidence            999999987

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.85  E-value=4.5e-21  Score=140.54  Aligned_cols=137  Identities=20%  Similarity=0.256  Sum_probs=94.4

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh------hHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS------IWEKYY   89 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~   89 (170)
                      +.++|+++|++|+|||||+|++.+......    .....+.......+...+..+.+|||||...+..      ....++
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~----~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~   77 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVG----NWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFI   77 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEE----ECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccC----CCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhh
Confidence            468999999999999999999987322111    1111233344445667788899999999776644      444555


Q ss_pred             --hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc----cCCHHHHHhHhCccccccceeEEE
Q 030848           90 --EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD----AVSADELARYLDLKKLDERVCMFE  163 (170)
Q Consensus        90 --~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~  163 (170)
                        ..+|++++|+|+++.   +....++..+...   ...|+++++||+|+.+    .....++.+.+        .++++
T Consensus        78 ~~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~~~  143 (271)
T 3k53_A           78 LDGNADVIVDIVDSTCL---MRNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKEL--------GVPVI  143 (271)
T ss_dssp             HTTCCSEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHH--------SSCEE
T ss_pred             hccCCcEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHc--------CCcEE
Confidence              689999999999875   3444555555543   2389999999999864    22333333333        35799


Q ss_pred             eeeccCC
Q 030848          164 AVSGYDG  170 (170)
Q Consensus       164 ~~Sa~~g  170 (170)
                      ++||++|
T Consensus       144 ~~Sa~~g  150 (271)
T 3k53_A          144 PTNAKKG  150 (271)
T ss_dssp             ECBGGGT
T ss_pred             EEEeCCC
Confidence            9999976

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.85  E-value=1.7e-20  Score=147.09  Aligned_cols=139  Identities=23%  Similarity=0.282  Sum_probs=98.2

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC-cch--------hhHH
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-GLR--------SIWE   86 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~--------~~~~   86 (170)
                      ..++|+++|.+|+|||||+|++.+........   ....|.......+...+..+.+|||||.+ +..        ....
T Consensus       242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~---~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~  318 (482)
T 1xzp_A          242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTD---IPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTL  318 (482)
T ss_dssp             HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCC---SSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHH
T ss_pred             CCCEEEEECcCCCcHHHHHHHHHCCCCCccCC---CCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHH
Confidence            44899999999999999999998742221111   11123333344577788999999999977 442        2234


Q ss_pred             HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeee
Q 030848           87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVS  166 (170)
Q Consensus        87 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  166 (170)
                      .+++.+|++|+|+|++++.+++.. ..+..+      .+.|+++|+||+|+.+....+++.+.+.      ..++++++|
T Consensus       319 ~~~~~aD~vl~VvD~s~~~s~~~~-~il~~l------~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iS  385 (482)
T 1xzp_A          319 QEIEKADIVLFVLDASSPLDEEDR-KILERI------KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKIS  385 (482)
T ss_dssp             HHHHHCSEEEEEEETTSCCCHHHH-HHHHHH------TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEE
T ss_pred             HHhhcccEEEEEecCCCCCCHHHH-HHHHHh------cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEE
Confidence            577999999999999998877653 222222      3679999999999987655555554432      235689999


Q ss_pred             ccCC
Q 030848          167 GYDG  170 (170)
Q Consensus       167 a~~g  170 (170)
                      |++|
T Consensus       386 Aktg  389 (482)
T 1xzp_A          386 ALKG  389 (482)
T ss_dssp             GGGT
T ss_pred             CCCC
Confidence            9986

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.85  E-value=1.7e-20  Score=140.74  Aligned_cols=88  Identities=30%  Similarity=0.476  Sum_probs=79.6

Q ss_pred             ccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCC----------CcccHHHHHHHHHHHHcCC
Q 030848           52 IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA----------CPSRFEDSKTALEKVLRNE  121 (170)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~  121 (170)
                      ..+|+++....+...+..+.+||++|++.++..|..++++++++|+|+|++          +..++.+...++..+....
T Consensus       145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~  224 (340)
T 4fid_A          145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE  224 (340)
T ss_dssp             CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred             ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence            345788888888889999999999999999999999999999999999998          7788999999999998877


Q ss_pred             CCCCCcEEEEeeCCCccc
Q 030848          122 DLQGAPLLILANKQDLPD  139 (170)
Q Consensus       122 ~~~~~~ii~v~nK~D~~~  139 (170)
                      ...+.|+++++||+|+..
T Consensus       225 ~~~~~piiLv~NK~DL~~  242 (340)
T 4fid_A          225 FLKGAVKLIFLNKMDLFE  242 (340)
T ss_dssp             GGTTSEEEEEEECHHHHH
T ss_pred             ccCCCeEEEEEECchhhh
Confidence            767899999999999864

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.84  E-value=1.6e-20  Score=144.84  Aligned_cols=153  Identities=18%  Similarity=0.104  Sum_probs=103.4

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCC--CCCCC-----------cccCCcceeEEEEEecCeEEEEEEcCCCC
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--GLPPD-----------RIVPTVGLNIGRIEVSNSKLVFWDLGGQP   79 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   79 (170)
                      ..+..++|+++|++++|||||++++.+......  .....           ....|+......+...+..+.+|||||++
T Consensus         7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~   86 (405)
T 2c78_A            7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA   86 (405)
T ss_dssp             --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred             CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence            467889999999999999999999976321111  00000           11224444444566667899999999999


Q ss_pred             cchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccc-CCH----HHHHhHhCcc
Q 030848           80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDA-VSA----DELARYLDLK  153 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii~v~nK~D~~~~-~~~----~~~~~~~~~~  153 (170)
                      .+......+++.+|++|+|+|+++.... ...+++..+..    .+.| +++++||+|+.+. ...    +++.+.++..
T Consensus        87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~  161 (405)
T 2c78_A           87 DYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQY  161 (405)
T ss_dssp             GGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHh
Confidence            9988888889999999999999887543 34455544433    3566 8999999999752 111    2333444433


Q ss_pred             ccccceeEEEeeeccCC
Q 030848          154 KLDERVCMFEAVSGYDG  170 (170)
Q Consensus       154 ~~~~~~~~~~~~Sa~~g  170 (170)
                      .+....++++++||++|
T Consensus       162 ~~~~~~~~~i~~SA~~g  178 (405)
T 2c78_A          162 EFPGDEVPVIRGSALLA  178 (405)
T ss_dssp             TSCTTTSCEEECCHHHH
T ss_pred             cccccCCCEEEccHHHh
Confidence            33334578999999875

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.84  E-value=1.7e-20  Score=142.41  Aligned_cols=145  Identities=21%  Similarity=0.279  Sum_probs=102.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcch---------hhH
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR---------SIW   85 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~   85 (170)
                      ...++++++|.+|+|||||+|++.+.......    ....|.......+...+..+.+|||||.....         ...
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~  240 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIAS----YPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAI  240 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEEC----CTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC----CCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHH
Confidence            45689999999999999999999763211111    11234444455566677889999999964321         122


Q ss_pred             HHHhhccCEEEEEEeCCCcc--cHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEE
Q 030848           86 EKYYEEAHAVVFVIDAACPS--RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFE  163 (170)
Q Consensus        86 ~~~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (170)
                      ..+...+|++++|+|++++.  +++....++..+.....  +.|+++|+||+|+.+....++..+.+.     ...++++
T Consensus       241 ~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~  313 (357)
T 2e87_A          241 LALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVADEENIKRLEKFVK-----EKGLNPI  313 (357)
T ss_dssp             HGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTCCHHHHHHHHHHHH-----HTTCCCE
T ss_pred             HHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccCChHHHHHHHHHHH-----hcCCCeE
Confidence            23445699999999998877  67777778877765432  789999999999976544444444443     3456799


Q ss_pred             eeeccCC
Q 030848          164 AVSGYDG  170 (170)
Q Consensus       164 ~~Sa~~g  170 (170)
                      ++||++|
T Consensus       314 ~iSA~~g  320 (357)
T 2e87_A          314 KISALKG  320 (357)
T ss_dssp             ECBTTTT
T ss_pred             EEeCCCC
Confidence            9999986

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.84  E-value=3.6e-21  Score=154.82  Aligned_cols=154  Identities=19%  Similarity=0.186  Sum_probs=102.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCC--------------CCC-------------cccCCcceeEEEEEec
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL--------------PPD-------------RIVPTVGLNIGRIEVS   66 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~--------------~~~-------------~~~~~~~~~~~~~~~~   66 (170)
                      .++.++|+++|++++|||||+++|..........              ...             ....|+......+...
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~  243 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  243 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence            3567999999999999999999997532111110              000             0122455555567778


Q ss_pred             CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcc---cH---HHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030848           67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS---RF---EDSKTALEKVLRNEDLQGAPLLILANKQDLPDA  140 (170)
Q Consensus        67 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~  140 (170)
                      +..+.+|||||++.+...+..+++.+|++|+|+|+++..   .+   .......... ...  ...|+++++||+|+.+.
T Consensus       244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~-~~l--gi~~iIVVvNKiDl~~~  320 (611)
T 3izq_1          244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SSL--GIHNLIIAMNKMDNVDW  320 (611)
T ss_dssp             SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH-HTT--TCCEEEEEEECTTTTTT
T ss_pred             CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHH-HHc--CCCeEEEEEecccccch
Confidence            889999999999999988888899999999999998642   00   1112222222 221  23569999999999762


Q ss_pred             --CC----HHHHHhHhCccccccceeEEEeeeccCC
Q 030848          141 --VS----ADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       141 --~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                        ..    ..++.+.+...+.....++++++||++|
T Consensus       321 ~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG  356 (611)
T 3izq_1          321 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSG  356 (611)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTC
T ss_pred             hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccC
Confidence              22    2233333333334445689999999987

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.84  E-value=2.1e-20  Score=144.25  Aligned_cols=150  Identities=18%  Similarity=0.211  Sum_probs=92.8

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccC--CcceeEEEEEe---------------c--------C
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEV---------------S--------N   67 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---------------~--------~   67 (170)
                      .+++.++|+++|+.++|||||++++.+...+   .......+  |+...+.....               .        .
T Consensus         4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~---~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~   80 (408)
T 1s0u_A            4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTD---RHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFL   80 (408)
T ss_dssp             -CCCCEEEEEESCTTSSHHHHHHHHHSCCCC---C-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEE
T ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhCCccc---cCcccccCCcEEEecccccccccccccccccccccccccCcccccc
Confidence            3567899999999999999999999753211   11122222  44443322211               0        1


Q ss_pred             eEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC----H
Q 030848           68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS----A  143 (170)
Q Consensus        68 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~----~  143 (170)
                      ..+.+|||||++.+...+...+..+|++|+|+|++++.......+.+..+.. .  ...|+++++||+|+.+...    .
T Consensus        81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l--~~~~iivv~NK~Dl~~~~~~~~~~  157 (408)
T 1s0u_A           81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-L--GIDKIIIVQNKIDLVDEKQAEENY  157 (408)
T ss_dssp             EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-T--TCCCEEEEEECTTSSCTTTTTTHH
T ss_pred             cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-c--CCCeEEEEEEccCCCCHHHHHHHH
Confidence            6799999999998888777778889999999999965422223333322221 1  2358999999999986432    3


Q ss_pred             HHHHhHhCccccccceeEEEeeeccCC
Q 030848          144 DELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +++.+.++..  ....++++++||++|
T Consensus       158 ~~i~~~l~~~--~~~~~~~i~vSA~~g  182 (408)
T 1s0u_A          158 EQIKEFVKGT--IAENAPIIPISAHHE  182 (408)
T ss_dssp             HHHHHHHTTS--TTTTCCEEEC-----
T ss_pred             HHHHHHHhhc--CCCCCeEEEeeCCCC
Confidence            4555555421  134678999999986

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.84  E-value=1.1e-20  Score=145.44  Aligned_cols=151  Identities=14%  Similarity=0.049  Sum_probs=101.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCC-CCCC---------C--cccCCcceeEEEEEecCeEEEEEEcCCCCcch
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-GLPP---------D--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR   82 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~-~~~~---------~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   82 (170)
                      ++.++|+++|++++|||||++++.+...... ..+.         .  ....|+......+...+..+.+|||||++.+.
T Consensus         1 k~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~   80 (397)
T 1d2e_A            1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV   80 (397)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred             CCeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHH
Confidence            4679999999999999999999976321110 0000         0  11123443333455567899999999999988


Q ss_pred             hhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcccc-CC----HHHHHhHhCccccc
Q 030848           83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDA-VS----ADELARYLDLKKLD  156 (170)
Q Consensus        83 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii~v~nK~D~~~~-~~----~~~~~~~~~~~~~~  156 (170)
                      .....+++.+|++|+|+|+++....+ ..+.+..+..    .+.| +++++||+|+.+. ..    .+++.+.++...+.
T Consensus        81 ~~~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~  155 (397)
T 1d2e_A           81 KNMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK  155 (397)
T ss_dssp             HHHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHhhHhhCCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence            88888899999999999999865433 3333333322    3566 7899999999752 11    12444444433443


Q ss_pred             cceeEEEeeeccCC
Q 030848          157 ERVCMFEAVSGYDG  170 (170)
Q Consensus       157 ~~~~~~~~~Sa~~g  170 (170)
                      ...++++++||++|
T Consensus       156 ~~~~~~i~~SA~~g  169 (397)
T 1d2e_A          156 GEETPIIVGSALCA  169 (397)
T ss_dssp             TTTSCEEECCHHHH
T ss_pred             cccCcEEEeehhhc
Confidence            44578999999874

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.84  E-value=1.3e-20  Score=147.22  Aligned_cols=153  Identities=16%  Similarity=0.264  Sum_probs=102.2

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCC--------------CCCC-------C------cccCCcceeEEEEEec
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GLPP-------D------RIVPTVGLNIGRIEVS   66 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~--------------~~~~-------~------~~~~~~~~~~~~~~~~   66 (170)
                      .++.++|+++|.+++|||||+++|........              +...       +      ....|+......+...
T Consensus         4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~   83 (458)
T 1f60_A            4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (458)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence            45779999999999999999999976321110              0000       0      1223555555567778


Q ss_pred             CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCccc---HH---HHHHHHHHHHcCCCCCCC-cEEEEeeCCCccc
Q 030848           67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR---FE---DSKTALEKVLRNEDLQGA-PLLILANKQDLPD  139 (170)
Q Consensus        67 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~-~ii~v~nK~D~~~  139 (170)
                      +..+.+|||||++.+......+++.+|++|+|+|+++...   |+   ...+.+.....    .+. ++++++||+|+.+
T Consensus        84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~  159 (458)
T 1f60_A           84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVK  159 (458)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGT
T ss_pred             CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEcccccc
Confidence            8899999999999999888889999999999999986521   11   22232222222    244 4999999999974


Q ss_pred             --cCCH----HHHHhHhCccccccceeEEEeeeccCC
Q 030848          140 --AVSA----DELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       140 --~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                        +...    +++.+.++..++....++++++||++|
T Consensus       160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g  196 (458)
T 1f60_A          160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNG  196 (458)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccC
Confidence              1111    233333333333334578999999986

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.84  E-value=3.2e-20  Score=143.35  Aligned_cols=150  Identities=18%  Similarity=0.246  Sum_probs=98.1

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccC--CcceeEEEEEec-----------------------C
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVS-----------------------N   67 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----------------------~   67 (170)
                      .+++.++|+++|+.++|||||++++.+...+   .......+  |+...+......                       .
T Consensus         6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~---~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~   82 (410)
T 1kk1_A            6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTD---THSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFV   82 (410)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC-----CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEE
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhCCccc---cChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccc
Confidence            3567899999999999999999999753211   11222222  444443322220                       1


Q ss_pred             eEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC----H
Q 030848           68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS----A  143 (170)
Q Consensus        68 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~----~  143 (170)
                      ..+.+|||||++.+.......+..+|++|+|+|+++........+.+..+...   ...|+++++||+|+.+...    .
T Consensus        83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~  159 (410)
T 1kk1_A           83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENY  159 (410)
T ss_dssp             EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHH
Confidence            67999999999998888888888999999999999653222222222222111   2357999999999976432    2


Q ss_pred             HHHHhHhCccccccceeEEEeeeccCC
Q 030848          144 DELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +++.+.+...  ....++++++||++|
T Consensus       160 ~~i~~~l~~~--~~~~~~~i~vSA~~g  184 (410)
T 1kk1_A          160 RQIKEFIEGT--VAENAPIIPISALHG  184 (410)
T ss_dssp             HHHHHHHTTS--TTTTCCEEECBTTTT
T ss_pred             HHHHHHHHhc--CcCCCeEEEeeCCCC
Confidence            3344444311  124678999999986

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.83  E-value=2.8e-21  Score=151.38  Aligned_cols=155  Identities=24%  Similarity=0.314  Sum_probs=88.3

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHHhhcccCC--------------CC-----------CC--CcccCCcceeEEEEE
Q 030848           12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GL-----------PP--DRIVPTVGLNIGRIE   64 (170)
Q Consensus        12 ~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~--------------~~-----------~~--~~~~~~~~~~~~~~~   64 (170)
                      ...++.++|+++|+.++|||||+++|........              +.           ..  .....|+......+.
T Consensus        38 ~~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~  117 (467)
T 1r5b_A           38 MYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFE  117 (467)
T ss_dssp             HSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEE
T ss_pred             hcCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEe
Confidence            3457789999999999999999999964221110              00           00  012335555555667


Q ss_pred             ecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcc---cHH---HHHHHHHHHHcCCCCCCCc-EEEEeeCCCc
Q 030848           65 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS---RFE---DSKTALEKVLRNEDLQGAP-LLILANKQDL  137 (170)
Q Consensus        65 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~-ii~v~nK~D~  137 (170)
                      ..+..+.+|||||++.+...+..+++.+|++|+|+|+++..   +|+   ...+.+.....    .+.| +++++||+|+
T Consensus       118 ~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~----~~vp~iivviNK~Dl  193 (467)
T 1r5b_A          118 TEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKMDE  193 (467)
T ss_dssp             CSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECTTS
T ss_pred             cCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH----cCCCEEEEEEECccC
Confidence            77889999999999999888888899999999999999762   121   11222222211    3555 9999999999


Q ss_pred             cccC-CH-------HHHHhHhCcc-ccc-cceeEEEeeeccCC
Q 030848          138 PDAV-SA-------DELARYLDLK-KLD-ERVCMFEAVSGYDG  170 (170)
Q Consensus       138 ~~~~-~~-------~~~~~~~~~~-~~~-~~~~~~~~~Sa~~g  170 (170)
                      .+.. +.       +++.+.+... ++. ...++++++||++|
T Consensus       194 ~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g  236 (467)
T 1r5b_A          194 PSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTG  236 (467)
T ss_dssp             TTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTT
T ss_pred             CCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccc
Confidence            6522 11       2333333322 222 23689999999986

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.83  E-value=9.5e-20  Score=138.22  Aligned_cols=117  Identities=19%  Similarity=0.410  Sum_probs=87.9

Q ss_pred             CCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCC----------cccHHHHHHHHHHHHcCCCC
Q 030848           54 PTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALEKVLRNEDL  123 (170)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~  123 (170)
                      +|+++....+...+..+.+|||+|++.++..|..++++++++|+|+|+++          ..++++...++..+......
T Consensus       187 ~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~  266 (362)
T 1zcb_A          187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF  266 (362)
T ss_dssp             CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred             CccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence            46677777788889999999999999999999999999999999999998          77899999999999887666


Q ss_pred             CCCcEEEEeeCCCccc------------------cCCHHHHHhHhC-----ccccc-cceeEEEeeeccCC
Q 030848          124 QGAPLLILANKQDLPD------------------AVSADELARYLD-----LKKLD-ERVCMFEAVSGYDG  170 (170)
Q Consensus       124 ~~~~ii~v~nK~D~~~------------------~~~~~~~~~~~~-----~~~~~-~~~~~~~~~Sa~~g  170 (170)
                      .+.|+++++||+|+..                  ..+.++..+++.     ..... ...+.+++|||++|
T Consensus       267 ~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~  337 (362)
T 1zcb_A          267 SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINT  337 (362)
T ss_dssp             TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCH
T ss_pred             CCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCc
Confidence            7899999999999963                  155666666552     11111 35678999999975

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.83  E-value=8.8e-21  Score=146.40  Aligned_cols=142  Identities=14%  Similarity=0.145  Sum_probs=95.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCe-EEEEEEcCCCCcchh-------hH
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS-KLVFWDLGGQPGLRS-------IW   85 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~D~~G~~~~~~-------~~   85 (170)
                      ....++|+++|..|+|||||+|++.+.....   .......|.......+...+. .+.+|||||++.+..       ..
T Consensus        31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~---~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~  107 (423)
T 3qq5_A           31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSI---VSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKA  107 (423)
T ss_dssp             -CCCEEEEEECSCSTTTTTTTTSSCC----------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHcCCCCc---cCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHH
Confidence            3467899999999999999999997621110   111222344444555666555 899999999775532       24


Q ss_pred             HHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEee
Q 030848           86 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAV  165 (170)
Q Consensus        86 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (170)
                      ..+++.+|++|+|+|++..   .....|+..+...    +.|+++|+||+|+.+....+...+..+     ...++++++
T Consensus       108 ~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~~~~~~l~~-----~~g~~v~~v  175 (423)
T 3qq5_A          108 RRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAEELKGLYES-----RYEAKVLLV  175 (423)
T ss_dssp             HHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT----TCCEEEECCCCTTTTCCCTHHHHHSSC-----CTTCCCCCC
T ss_pred             HHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc----CCCEEEEEeCcCCCCccHHHHHHHHHH-----HcCCCEEEE
Confidence            5577899999999998332   3345555555443    789999999999988665544444433     345689999


Q ss_pred             eccCC
Q 030848          166 SGYDG  170 (170)
Q Consensus       166 Sa~~g  170 (170)
                      ||++|
T Consensus       176 SAktg  180 (423)
T 3qq5_A          176 SALQK  180 (423)
T ss_dssp             SSCCT
T ss_pred             ECCCC
Confidence            99986

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.82  E-value=5e-20  Score=132.56  Aligned_cols=125  Identities=14%  Similarity=0.070  Sum_probs=77.4

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC-----------cc
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-----------GL   81 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----------~~   81 (170)
                      .....++|+++|.+|+|||||+|++.+...  ..........+.......+...+..+.+|||||..           .+
T Consensus        25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~--~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~  102 (239)
T 3lxx_A           25 PRNSQLRIVLVGKTGAGKSATGNSILGRKV--FHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEI  102 (239)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHTSCC--SCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHcCCCc--CccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHH
Confidence            345779999999999999999999987222  11111111234455555677788899999999932           33


Q ss_pred             hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCccccC
Q 030848           82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPDAV  141 (170)
Q Consensus        82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~ii~v~nK~D~~~~~  141 (170)
                      ...+..+++.+|++|+|+|++.....  ...++..+..... ....|+++|+||+|+.+..
T Consensus       103 ~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~  161 (239)
T 3lxx_A          103 IRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDT  161 (239)
T ss_dssp             HHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC---
T ss_pred             HHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcc
Confidence            44445556678999999999754442  2222333322111 0235899999999987643

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.82  E-value=5.9e-20  Score=142.96  Aligned_cols=139  Identities=23%  Similarity=0.219  Sum_probs=88.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc---------chhhHHHH
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG---------LRSIWEKY   88 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~   88 (170)
                      .+|+++|.+|+|||||+|++.+......   ......|.......+.+.+..+.+|||||.+.         +...+..+
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v---~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~   78 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIV---EDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNM   78 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC-----------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCcee---cCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHH
Confidence            4799999999999999999976221111   11111223333455677888999999999654         34456778


Q ss_pred             hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHH-HhHhCccccccceeEEEeeec
Q 030848           89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADEL-ARYLDLKKLDERVCMFEAVSG  167 (170)
Q Consensus        89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa  167 (170)
                      ++.+|++|+|+|++++.+..+  .++..++..   .+.|+++++||+|+.+.. ..+. .+... .+.    .+++++||
T Consensus        79 ~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~~-lg~----~~~~~iSA  147 (439)
T 1mky_A           79 IREADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREF-EREVKPELYS-LGF----GEPIPVSA  147 (439)
T ss_dssp             HTTCSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHGG-GSS----CSCEECBT
T ss_pred             HHhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHHh-cCC----CCEEEEec
Confidence            899999999999987655432  222233222   367999999999986431 1222 22221 111    14789999


Q ss_pred             cCC
Q 030848          168 YDG  170 (170)
Q Consensus       168 ~~g  170 (170)
                      ++|
T Consensus       148 ~~g  150 (439)
T 1mky_A          148 EHN  150 (439)
T ss_dssp             TTT
T ss_pred             cCC
Confidence            987

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.81  E-value=3.7e-20  Score=144.52  Aligned_cols=139  Identities=23%  Similarity=0.240  Sum_probs=85.8

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHH-------
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEK-------   87 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-------   87 (170)
                      +..++|+++|++|+|||||+|++.+..........   ..|.......+...+..+.+|||||..+....+..       
T Consensus       222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~---gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~  298 (462)
T 3geh_A          222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLP---GTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSR  298 (462)
T ss_dssp             HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCT---TCCHHHHHHEEEETTEEEEECC--------------------
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCC---CeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHh
Confidence            35689999999999999999999874322121111   11222223356678889999999997655433332       


Q ss_pred             -HhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeee
Q 030848           88 -YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVS  166 (170)
Q Consensus        88 -~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  166 (170)
                       +++.+|++|+|+|++++.+... ..++..+      .+.|+++|+||+|+.+.....    ..+  .. ....+++++|
T Consensus       299 ~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~----~~~--~~-~~~~~~i~iS  364 (462)
T 3geh_A          299 QAANTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT----SLE--YP-ENITQIVHTA  364 (462)
T ss_dssp             CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST----TCC--CC-TTCCCEEEEB
T ss_pred             hhhhcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH----HHH--Hh-ccCCcEEEEE
Confidence             4678999999999998766544 3344433      236999999999997643222    111  01 1346799999


Q ss_pred             ccCC
Q 030848          167 GYDG  170 (170)
Q Consensus       167 a~~g  170 (170)
                      |++|
T Consensus       365 Aktg  368 (462)
T 3geh_A          365 AAQK  368 (462)
T ss_dssp             TTTT
T ss_pred             CCCC
Confidence            9986

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.81  E-value=8.4e-22  Score=158.03  Aligned_cols=155  Identities=16%  Similarity=0.167  Sum_probs=83.3

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCC-------------------------CCC--cccCCcceeEEEEE
Q 030848           12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL-------------------------PPD--RIVPTVGLNIGRIE   64 (170)
Q Consensus        12 ~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~-------------------------~~~--~~~~~~~~~~~~~~   64 (170)
                      ...++.++|+++|++++|||||+++|..........                         ...  ....|+......+.
T Consensus       172 ~~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~  251 (592)
T 3mca_A          172 SNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE  251 (592)
T ss_dssp             SCCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------
T ss_pred             ccCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEE
Confidence            345678999999999999999999996432211111                         000  11123344444555


Q ss_pred             ecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcc---c---HHHHHHHHHHHHcCCCCCCC-cEEEEeeCCCc
Q 030848           65 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS---R---FEDSKTALEKVLRNEDLQGA-PLLILANKQDL  137 (170)
Q Consensus        65 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~---~~~~~~~~~~~~~~~~~~~~-~ii~v~nK~D~  137 (170)
                      ..+..+.||||||++.+.......++.+|++|+|+|+++..   .   .......+..+..    .+. ++++++||+|+
T Consensus       252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl  327 (592)
T 3mca_A          252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDL  327 (592)
T ss_dssp             -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGG
T ss_pred             eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEecccc
Confidence            66788999999999998877777789999999999998642   0   1111222222222    234 49999999999


Q ss_pred             ccc--CC----HHHHHhHh-CccccccceeEEEeeeccCC
Q 030848          138 PDA--VS----ADELARYL-DLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       138 ~~~--~~----~~~~~~~~-~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      .+.  ..    ..++.+.+ ...++....++++++||++|
T Consensus       328 ~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G  367 (592)
T 3mca_A          328 MSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISG  367 (592)
T ss_dssp             GTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSC
T ss_pred             ccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccC
Confidence            752  22    23444444 43455556789999999987

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.81  E-value=8.7e-20  Score=143.35  Aligned_cols=149  Identities=16%  Similarity=0.191  Sum_probs=96.4

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccC-CCCCCC--cccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNV-EGLPPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      .+.++|+++|+.++|||||++++.+..... .+....  ....|+......+...+..+.+|||||++.+...+..+++.
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~   96 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI   96 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhh
Confidence            457899999999999999999997632100 000111  12234455455666788899999999999998888888999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHH----hHhCcc-ccccceeEEEeee
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELA----RYLDLK-KLDERVCMFEAVS  166 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~S  166 (170)
                      +|++|+|+|+++...-+ ..+.+..+..    .+.|+++++||+|+.++...++..    +.++.. .  ...++++++|
T Consensus        97 aD~~ilVvda~~g~~~q-t~e~l~~~~~----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~--~~~~~ii~vS  169 (482)
T 1wb1_A           97 IDLALIVVDAKEGPKTQ-TGEHMLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHN--LKNSSIIPIS  169 (482)
T ss_dssp             CCEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSS--GGGCCEEECC
T ss_pred             CCEEEEEEecCCCccHH-HHHHHHHHHH----cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcc--cccceEEEEE
Confidence            99999999998743222 2222222222    357789999999998643333333    333211 1  2257899999


Q ss_pred             ccCC
Q 030848          167 GYDG  170 (170)
Q Consensus       167 a~~g  170 (170)
                      |++|
T Consensus       170 A~~g  173 (482)
T 1wb1_A          170 AKTG  173 (482)
T ss_dssp             TTTC
T ss_pred             CcCC
Confidence            9986

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.81  E-value=5.2e-20  Score=143.15  Aligned_cols=138  Identities=20%  Similarity=0.242  Sum_probs=84.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC--------cchhhHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP--------GLRSIWEKYY   89 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~   89 (170)
                      .+|+++|.+|+|||||+|++.+......   ......|.......+.+.+..+.+|||||.+        .+...+..++
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v---~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~   80 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIV---EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM   80 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC--------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceee---cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence            6899999999999999999976221111   1111122233333455567889999999975        4566677788


Q ss_pred             hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +.+|++|+|+|++++.+..+  .++..++..   .+.|+++++||+|+.+..  .+..+.+. .    ...+++++||++
T Consensus        81 ~~ad~il~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~~--~~~~~~~~-l----g~~~~~~iSA~~  148 (436)
T 2hjg_A           81 DEADVIIFMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYS-L----GFGEPYPISGTH  148 (436)
T ss_dssp             HHCSEEEEEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC-------CCCSSGG-G----SSCCCEECBTTT
T ss_pred             HhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccch--hhHHHHHH-c----CCCCeEEEeCcC
Confidence            99999999999998766543  334444443   578999999999986531  11111111 1    112688999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       149 g  149 (436)
T 2hjg_A          149 G  149 (436)
T ss_dssp             T
T ss_pred             C
Confidence            6

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.80  E-value=2.6e-19  Score=136.38  Aligned_cols=130  Identities=13%  Similarity=0.084  Sum_probs=95.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV   98 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   98 (170)
                      +|+++|++++|||||++++.            ....|++.....+...+..+.+|||||++++.......++.+|++|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailV   90 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLC   90 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS------------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHH------------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEE
Confidence            89999999999999999996            333455666666777788999999999999988788888999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHcCCCCCCCcE-EEEee-CCCccccCCH----HHHHhHhCccccccceeEEEe--eeccC
Q 030848           99 IDAACPSRFEDSKTALEKVLRNEDLQGAPL-LILAN-KQDLPDAVSA----DELARYLDLKKLDERVCMFEA--VSGYD  169 (170)
Q Consensus        99 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i-i~v~n-K~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~Sa~~  169 (170)
                      +| +. .......+++..+..    .+.|. ++++| |+|+ ++...    +++.+.++...  ...+++++  +||++
T Consensus        91 vd-~~-g~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~--~~~~~ii~~~~SA~~  160 (370)
T 2elf_A           91 IP-PQ-GLDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTV--LQDWECISLNTNKSA  160 (370)
T ss_dssp             EC-TT-CCCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTST--TTTCEEEECCCCTTS
T ss_pred             Ec-CC-CCcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcC--CCceEEEeccccccc
Confidence            99 53 344555555554433    24566 88888 9999 53222    33444443221  23579999  99998

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.80  E-value=1.9e-19  Score=142.62  Aligned_cols=121  Identities=20%  Similarity=0.165  Sum_probs=88.4

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccC------C-----CCCCC-------cccCCcceeEEEEEecCeEEEEEEcCC
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNV------E-----GLPPD-------RIVPTVGLNIGRIEVSNSKLVFWDLGG   77 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~------~-----~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~D~~G   77 (170)
                      ...+|+++|++|+|||||++++.......      .     .....       ....++......+.+.+..+.+|||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG   91 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG   91 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence            56799999999999999999995211100      0     00000       012244445556778889999999999


Q ss_pred             CCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC
Q 030848           78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV  141 (170)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~  141 (170)
                      ++.+...+..+++.+|++|+|+|+++....+... .+..+..    .+.|+++++||+|+.+..
T Consensus        92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~~----~~iPiivviNK~Dl~~~~  150 (528)
T 3tr5_A           92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCRL----RHTPIMTFINKMDRDTRP  150 (528)
T ss_dssp             STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHHT----TTCCEEEEEECTTSCCSC
T ss_pred             chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEeCCCCcccc
Confidence            9999999999999999999999999876655543 3333333    478999999999997643

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.80  E-value=1.1e-18  Score=139.73  Aligned_cols=148  Identities=20%  Similarity=0.186  Sum_probs=95.4

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC-CCc----------ccCCcceeEEEEEec-----CeEEEEEEcCCC
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP-PDR----------IVPTVGLNIGRIEVS-----NSKLVFWDLGGQ   78 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~~-----~~~~~i~D~~G~   78 (170)
                      .+..+|+++|+.++|||||++++........... ...          ...|+......+.+.     ...+.+|||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            3567899999999999999999975322111100 000          111222222223332     367999999999


Q ss_pred             CcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC-cccccc
Q 030848           79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD-LKKLDE  157 (170)
Q Consensus        79 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~-~~~~~~  157 (170)
                      +.+...+..+++.+|++|+|+|+++..+.+....|.... .    .+.|+++++||+|+++.. .++..+.+. ..+.  
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~lg~--  155 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSAD-VDRVKKQIEEVLGL--  155 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHTSCC--
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccC-HHHHHHHHHHhhCC--
Confidence            999988889999999999999999987776655554433 2    478999999999998754 333323232 1112  


Q ss_pred             ceeEEEeeeccCC
Q 030848          158 RVCMFEAVSGYDG  170 (170)
Q Consensus       158 ~~~~~~~~Sa~~g  170 (170)
                      ...+++++||++|
T Consensus       156 ~~~~vi~vSAktg  168 (600)
T 2ywe_A          156 DPEEAILASAKEG  168 (600)
T ss_dssp             CGGGCEECBTTTT
T ss_pred             CcccEEEEEeecC
Confidence            2234899999986

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.80  E-value=2.2e-19  Score=131.72  Aligned_cols=150  Identities=17%  Similarity=0.221  Sum_probs=82.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCC--CCCcccCCcceeEEEEEec--C--eEEEEEEcCCCC-------cc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL--PPDRIVPTVGLNIGRIEVS--N--SKLVFWDLGGQP-------GL   81 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~--~~~~i~D~~G~~-------~~   81 (170)
                      ...++|+++|.+|+|||||+|++.+........  ......+|++.........  +  ..+.+|||||..       .+
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~   85 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW   85 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence            457899999999999999999986521111110  0111245566555544432  2  489999999962       22


Q ss_pred             hhhH-------HHHhhc-------------cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC
Q 030848           82 RSIW-------EKYYEE-------------AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV  141 (170)
Q Consensus        82 ~~~~-------~~~~~~-------------~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~  141 (170)
                      ....       ..+++.             +|+++++++.+..........++..+..     +.|+++|+||+|+....
T Consensus        86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~~  160 (274)
T 3t5d_A           86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-----KVNIIPLIAKADTLTPE  160 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-----TSCEEEEESSGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-----cCCEEEEEeccCCCCHH
Confidence            3322       444443             7899999977653333333334444422     78999999999997544


Q ss_pred             CHHHHHhHhCccccccceeEEEeeeccCC
Q 030848          142 SADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ......+.+. ..+....++++++||++|
T Consensus       161 e~~~~~~~i~-~~l~~~~i~v~~~sa~~~  188 (274)
T 3t5d_A          161 ECQQFKKQIM-KEIQEHKIKIYEFPETDD  188 (274)
T ss_dssp             HHHHHHHHHH-HHHHHTTCCCCCC-----
T ss_pred             HHHHHHHHHH-HHHHHcCCeEEcCCCCCC
Confidence            3333322222 111134566777887654

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.80  E-value=8.9e-19  Score=127.45  Aligned_cols=123  Identities=12%  Similarity=0.159  Sum_probs=75.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcc-----------h
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL-----------R   82 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----------~   82 (170)
                      ....++|+++|.+|+|||||+|++.+........  .....|.......+...+..+.+|||||....           .
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~   96 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKL--GSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQ   96 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCT--TSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCC--CCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence            4467899999999999999999998622111111  11112334444456677889999999995443           2


Q ss_pred             hhHHHHhhccCEEEEEEeCCCcccH-HHHHHHHHHHHcCCCCCCCcEEEEee-CCCcccc
Q 030848           83 SIWEKYYEEAHAVVFVIDAACPSRF-EDSKTALEKVLRNEDLQGAPLLILAN-KQDLPDA  140 (170)
Q Consensus        83 ~~~~~~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~ii~v~n-K~D~~~~  140 (170)
                      .....+++.+|++|+|+|++..... .....++..+....  ...|.++++| |+|+.+.
T Consensus        97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~  154 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGG  154 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTC
T ss_pred             HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch--hhccEEEEEEcccccCCc
Confidence            2233466889999999999863222 22223333332211  1345666665 9999753

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.80  E-value=1.2e-19  Score=145.35  Aligned_cols=114  Identities=22%  Similarity=0.266  Sum_probs=78.5

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE----------------ecCeEEEEEEcCCCC
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE----------------VSNSKLVFWDLGGQP   79 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~   79 (170)
                      +.++|+++|++++|||||++++.+..  ..........++++......+                +....+.+|||||++
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~--v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe   81 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSA--VASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE   81 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHH--HSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhccc--CccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence            46799999999999999999997632  111111122233333322211                112259999999999


Q ss_pred             cchhhHHHHhhccCEEEEEEeCCC---cccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           80 GLRSIWEKYYEEAHAVVFVIDAAC---PSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      .+...+..+++.+|++|+|+|+++   +.+++..    ..+..    .+.|+++++||+|+.+
T Consensus        82 ~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l----~~l~~----~~vPiIVViNKiDl~~  136 (594)
T 1g7s_A           82 AFTTLRKRGGALADLAILIVDINEGFKPQTQEAL----NILRM----YRTPFVVAANKIDRIH  136 (594)
T ss_dssp             CCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH----HHHHH----TTCCEEEEEECGGGST
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH----HHHHH----cCCeEEEEeccccccc
Confidence            998888888899999999999998   3343332    22222    4789999999999975

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.80  E-value=4.2e-19  Score=138.20  Aligned_cols=147  Identities=22%  Similarity=0.218  Sum_probs=91.6

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhh-----------
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI-----------   84 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------   84 (170)
                      ..++++++|++|+|||||+|++.+.........+.   .|.......+...+..+.+|||||.+.....           
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~g---tT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPG---TTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC---------CCEEEEETTEEEEESSCSCC-----------CCSCCH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCC---CcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHH
Confidence            34899999999999999999998732211111111   1112222346677788999999996432211           


Q ss_pred             -HHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC--CHHHHHhHhCccccccceeE
Q 030848           85 -WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV--SADELARYLDLKKLDERVCM  161 (170)
Q Consensus        85 -~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~  161 (170)
                       ...+++.+|++++|+|+++..+.+.. . +......   .+.|+++++||+|+.+..  ..++..+.+..........+
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~-i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQ-R-MAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSP  330 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-H-HHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSC
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHH-H-HHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCc
Confidence             13466889999999999987665542 2 2222222   478999999999997632  34444433332222234568


Q ss_pred             EEeeeccCC
Q 030848          162 FEAVSGYDG  170 (170)
Q Consensus       162 ~~~~Sa~~g  170 (170)
                      ++++||++|
T Consensus       331 ~~~~SA~~g  339 (439)
T 1mky_A          331 LIFTSADKG  339 (439)
T ss_dssp             EEECBTTTT
T ss_pred             EEEEECCCC
Confidence            999999987

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.80  E-value=7.5e-19  Score=140.75  Aligned_cols=147  Identities=15%  Similarity=0.153  Sum_probs=92.3

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC-CCc----------ccCCcceeEEEEEec-----CeEEEEEEcCCCC
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP-PDR----------IVPTVGLNIGRIEVS-----NSKLVFWDLGGQP   79 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~~-----~~~~~i~D~~G~~   79 (170)
                      +..+|+++|+.++|||||++++........... ...          ...|+......+.+.     +..+.+|||||++
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            457899999999999999999976322111100 001          111222222233332     3689999999999


Q ss_pred             cchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC-ccccccc
Q 030848           80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD-LKKLDER  158 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~-~~~~~~~  158 (170)
                      .+...+..+++.+|++|+|+|+++..+.+....|.... .    .+.|+++++||+|+++.. .++..+.+. ...  ..
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~-~~~v~~ei~~~lg--~~  154 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAAD-PERVAEEIEDIVG--ID  154 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHHTC--CC
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCccccc-HHHHHHHHHHHhC--CC
Confidence            99999999999999999999999887776655554443 2    367999999999998754 332222222 111  12


Q ss_pred             eeEEEeeeccCC
Q 030848          159 VCMFEAVSGYDG  170 (170)
Q Consensus       159 ~~~~~~~Sa~~g  170 (170)
                      ..+++++||++|
T Consensus       155 ~~~vi~vSAktg  166 (599)
T 3cb4_D          155 ATDAVRCSAKTG  166 (599)
T ss_dssp             CTTCEEECTTTC
T ss_pred             cceEEEeecccC
Confidence            234899999986

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.80  E-value=5.2e-19  Score=135.36  Aligned_cols=85  Identities=24%  Similarity=0.506  Sum_probs=76.4

Q ss_pred             CcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCC----------cccHHHHHHHHHHHHcCCCCC
Q 030848           55 TVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC----------PSRFEDSKTALEKVLRNEDLQ  124 (170)
Q Consensus        55 ~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~  124 (170)
                      |+++....+.+.+..+.+|||+|++.++..|..++++++++|+|+|+++          ..++++...|+..+.......
T Consensus       204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~  283 (402)
T 1azs_C          204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR  283 (402)
T ss_dssp             CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred             eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence            5666666777788999999999999999999999999999999999998          889999999999998876667


Q ss_pred             CCcEEEEeeCCCccc
Q 030848          125 GAPLLILANKQDLPD  139 (170)
Q Consensus       125 ~~~ii~v~nK~D~~~  139 (170)
                      +.|+++++||+|+..
T Consensus       284 ~~piiLvgNK~DL~~  298 (402)
T 1azs_C          284 TISVILFLNKQDLLA  298 (402)
T ss_dssp             SCCEEEEEECHHHHH
T ss_pred             CCeEEEEEEChhhhh
Confidence            899999999999854

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.80  E-value=2e-18  Score=125.84  Aligned_cols=122  Identities=11%  Similarity=0.041  Sum_probs=81.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhh----
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYE----   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~----   90 (170)
                      .+.++|+++|.+|+|||||+|++.+......   ......+.......+...+..+.+|||||++++......+++    
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~  110 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRV---SPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKG  110 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCC---CSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCccc---CCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHH
Confidence            4689999999999999999999987221111   111222444445567778889999999998766433333322    


Q ss_pred             -----ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCC-CCCcEEEEeeCCCccc
Q 030848           91 -----EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL-QGAPLLILANKQDLPD  139 (170)
Q Consensus        91 -----~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~ii~v~nK~D~~~  139 (170)
                           .+|++|+|++++..........++..+...... ...|+++++||+|+.+
T Consensus       111 ~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~  165 (262)
T 3def_A          111 FLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP  165 (262)
T ss_dssp             HTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred             HHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence                 789999999988755323334555555433221 1248999999999953

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.80  E-value=1.5e-20  Score=148.58  Aligned_cols=146  Identities=21%  Similarity=0.210  Sum_probs=95.7

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe-cCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   94 (170)
                      ...+|+++|++++|||||+++|.+......  ....  .|.......+.. .+..+.+|||||++.+..++..+++.+|+
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~g--iT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~   78 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGG--ITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDI   78 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCC--BCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccc--cCCc--eeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCE
Confidence            457899999999999999999975221111  1111  111221222333 35679999999999999988888999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC---HHHHHhHhCccccccceeEEEeeeccCC
Q 030848           95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +|+|+|+++....+.. ..+.....    .+.|+++++||+|+++...   ..++.+.-.........++++++||++|
T Consensus        79 vILVVDa~dg~~~qt~-e~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG  152 (537)
T 3izy_P           79 VILVVAADDGVMKQTV-ESIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTG  152 (537)
T ss_dssp             CEEECBSSSCCCHHHH-HHHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSS
T ss_pred             EEEEEECCCCccHHHH-HHHHHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCC
Confidence            9999999987665443 33333322    4679999999999975321   2222222111111123579999999987

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.80  E-value=4.8e-19  Score=133.93  Aligned_cols=74  Identities=24%  Similarity=0.454  Sum_probs=65.4

Q ss_pred             cCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCC----------CcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCC
Q 030848           66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA----------CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ  135 (170)
Q Consensus        66 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~  135 (170)
                      ....+.+|||+|++.++..|..++++++++|+|+|++          +..++++...|+..+......++.|+++++||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            4578999999999999999999999999999999998          788999999999999876555789999999999


Q ss_pred             Cccc
Q 030848          136 DLPD  139 (170)
Q Consensus       136 D~~~  139 (170)
                      |+..
T Consensus       261 DL~~  264 (354)
T 2xtz_A          261 DIFE  264 (354)
T ss_dssp             HHHH
T ss_pred             chhh
Confidence            9854

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.79  E-value=5.8e-19  Score=131.16  Aligned_cols=143  Identities=18%  Similarity=0.195  Sum_probs=88.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC-cch--------hhHH
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-GLR--------SIWE   86 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~--------~~~~   86 (170)
                      +..+|+++|++|+|||||+|++.+.........+   ..|.......+...+.++.+|||||.. ...        ....
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~---~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~   83 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKA---QTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAAS   83 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCS---SCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCC---CcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence            4458999999999999999999873221111111   112222223456678899999999987 322        2223


Q ss_pred             HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEee
Q 030848           87 KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAV  165 (170)
Q Consensus        87 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (170)
                      .+++.+|++++|+|+++   +.....++...+..   .+.|+++++||+|+.. .....+..+.+...   ....+++++
T Consensus        84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~---~~~~~~i~i  154 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQ---MNFLDIVPI  154 (301)
T ss_dssp             SCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTT---SCCSEEEEC
T ss_pred             HHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHHHh---cCcCceEEE
Confidence            45678999999999976   22222333333332   4789999999999976 22222222222211   112378999


Q ss_pred             eccCC
Q 030848          166 SGYDG  170 (170)
Q Consensus       166 Sa~~g  170 (170)
                      ||++|
T Consensus       155 SA~~g  159 (301)
T 1ega_A          155 SAETG  159 (301)
T ss_dssp             CTTTT
T ss_pred             ECCCC
Confidence            99875

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.79  E-value=1.3e-18  Score=132.18  Aligned_cols=145  Identities=20%  Similarity=0.261  Sum_probs=89.4

Q ss_pred             eeE-EEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc---------chhhHH
Q 030848           17 EFH-VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG---------LRSIWE   86 (170)
Q Consensus        17 ~~~-i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~   86 (170)
                      .++ |+++|++|+|||||+|++.+.....    ......|.+.....+.+.+..+.+|||+|...         +...+ 
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~----~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl-  252 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKV----DTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTL-  252 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC---------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHH-
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccc----cCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHH-
Confidence            455 9999999999999999998732211    12223444445556777788899999999521         22222 


Q ss_pred             HHhhccCEEEEEEeCCCcc--cHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHh----Ccccccccee
Q 030848           87 KYYEEAHAVVFVIDAACPS--RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYL----DLKKLDERVC  160 (170)
Q Consensus        87 ~~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~----~~~~~~~~~~  160 (170)
                      ..+..+|.+++|+|++++.  ..+....+ ..++......+.|+++|+||+|+.+.. ..+..+.+    ..  .....+
T Consensus       253 ~~~~~aD~il~VvD~s~~~~~~~~~~~~~-~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~--l~~~~~  328 (364)
T 2qtf_A          253 SEAKYSDALILVIDSTFSENLLIETLQSS-FEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKE--LYSPIF  328 (364)
T ss_dssp             HGGGGSSEEEEEEETTSCHHHHHHHHHHH-HHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHH--HCSCEE
T ss_pred             HHHHhCCEEEEEEECCCCcchHHHHHHHH-HHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHH--hcCCCC
Confidence            3468899999999998876  33333333 233333333578999999999997643 22211111    10  002245


Q ss_pred             EEEeeeccCC
Q 030848          161 MFEAVSGYDG  170 (170)
Q Consensus       161 ~~~~~Sa~~g  170 (170)
                      +++++||++|
T Consensus       329 ~~~~~SA~~g  338 (364)
T 2qtf_A          329 DVIPISALKR  338 (364)
T ss_dssp             EEEECBTTTT
T ss_pred             cEEEEECCCC
Confidence            7899999986

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.79  E-value=6.3e-19  Score=148.03  Aligned_cols=153  Identities=17%  Similarity=0.160  Sum_probs=101.6

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCC-C-------CC--C--CcccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-G-------LP--P--DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~-~-------~~--~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   80 (170)
                      ..++.++|+++|++++|||||++++.+...... .       ..  .  .....|+......++..+..+.+|||||++.
T Consensus       292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed  371 (1289)
T 3avx_A          292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD  371 (1289)
T ss_dssp             CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred             ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence            356789999999999999999999976321110 0       00  0  0111233333334556678999999999999


Q ss_pred             chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCccccCC-----HHHHHhHhCccc
Q 030848           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLPDAVS-----ADELARYLDLKK  154 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii~v~nK~D~~~~~~-----~~~~~~~~~~~~  154 (170)
                      +......+++.+|++|+|+|+++....+ ..+++..+..    .+.| +++++||+|+.+...     .+++.+.+...+
T Consensus       372 F~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G  446 (1289)
T 3avx_A          372 YVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD  446 (1289)
T ss_dssp             HHHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcc
Confidence            9888888899999999999999864433 3334433322    2566 899999999975211     123444444344


Q ss_pred             cccceeEEEeeeccCC
Q 030848          155 LDERVCMFEAVSGYDG  170 (170)
Q Consensus       155 ~~~~~~~~~~~Sa~~g  170 (170)
                      +....++++++||++|
T Consensus       447 ~~~~~vp~IpvSAktG  462 (1289)
T 3avx_A          447 FPGDDTPIVRGSALKA  462 (1289)
T ss_dssp             SCTTTCCEEECCSTTT
T ss_pred             ccccceeEEEEEeccC
Confidence            4345679999999986

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.79  E-value=3.9e-18  Score=126.18  Aligned_cols=98  Identities=21%  Similarity=0.159  Sum_probs=62.8

Q ss_pred             CeEEEEEEcCCCC-------------cchhhHHHHhhccCEEE-EEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 030848           67 NSKLVFWDLGGQP-------------GLRSIWEKYYEEAHAVV-FVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA  132 (170)
Q Consensus        67 ~~~~~i~D~~G~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~  132 (170)
                      ...+.+|||||..             .+......+++.++.++ +|+|+++..+......+...+ .   ..+.|+++|+
T Consensus       124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~-~---~~~~~~i~V~  199 (299)
T 2aka_B          124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV-D---PQGQRTIGVI  199 (299)
T ss_dssp             CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHH-C---TTCSSEEEEE
T ss_pred             CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHh-C---CCCCeEEEEE
Confidence            3689999999942             23456677888888776 699998765444433333333 2   2468999999


Q ss_pred             eCCCccccCC--HHHHHhHhCccccccceeEEEeeeccCC
Q 030848          133 NKQDLPDAVS--ADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       133 nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ||+|+.+...  .+.+...+.  .......+++++||++|
T Consensus       200 NK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~v~~~SA~~~  237 (299)
T 2aka_B          200 TKLDLMDEGTDARDVLENKLL--PLRRGYIGVVNRSQKDI  237 (299)
T ss_dssp             ECGGGSCTTCCCHHHHTTCSS--CCTTCEEECCCCCCBCT
T ss_pred             EccccCCCCchHHHHHhCCcC--cCCCCcEEEECCChhhc
Confidence            9999976433  222222111  11112468999999986

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.78  E-value=7.5e-20  Score=143.59  Aligned_cols=145  Identities=23%  Similarity=0.250  Sum_probs=93.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEE
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   95 (170)
                      +..+|+++|++++|||||++++.....  .....  ...|.......+...+..+.+|||||++.+...+...++.+|++
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v--~~~e~--~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~a   78 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKV--ASGEA--GGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIV   78 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHH--SBTTB--CCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCC--ccccC--CCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEE
Confidence            457899999999999999999976211  11110  11122222223445567899999999999988888888999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccc--c--cceeEEEeeeccCC
Q 030848           96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKL--D--ERVCMFEAVSGYDG  170 (170)
Q Consensus        96 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~Sa~~g  170 (170)
                      |+|+|+++....+. .+.+.....    .+.|+++++||+|+++... ++..+.+.....  .  ...++++++||++|
T Consensus        79 ILVVda~~g~~~qT-~e~l~~~~~----~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG  151 (501)
T 1zo1_I           79 VLVVAADDGVMPQT-IEAIQHAKA----AQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAG  151 (501)
T ss_dssp             EEEEETTTBSCTTT-HHHHHHHHH----TTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTC
T ss_pred             EEEeecccCccHHH-HHHHHHHHh----cCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeec
Confidence            99999987432221 122222222    4678999999999975321 112112211111  1  12479999999987

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.78  E-value=2.6e-19  Score=139.91  Aligned_cols=142  Identities=19%  Similarity=0.232  Sum_probs=85.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC--------CCcchhhH
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG--------QPGLRSIW   85 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~   85 (170)
                      .+...+|+++|.+|+|||||+|++.+......   .+....|...........+..+.+|||||        ++.+....
T Consensus        20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v---~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~   96 (456)
T 4dcu_A           20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIV---EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQA   96 (456)
T ss_dssp             ---CCEEEEECSSSSSHHHHHHHHEEEEEC--------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCcHHHHHHHHhCCCCccc---CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHH
Confidence            34567999999999999999999976221111   11111222333334555678899999999        56667777


Q ss_pred             HHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEee
Q 030848           86 EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAV  165 (170)
Q Consensus        86 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (170)
                      ..+++.+|++|+|+|..+..+.  ...++..++..   .+.|+++++||+|+.+..  .+..+.+. .+.    ...+++
T Consensus        97 ~~~~~~ad~il~VvD~~~~~~~--~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~~-lg~----~~~~~i  164 (456)
T 4dcu_A           97 EIAMDEADVIIFMVNGREGVTA--ADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYS-LGF----GEPYPI  164 (456)
T ss_dssp             HHHHHHCSEEEEEEESSSCSCH--HHHHHHHHHTT---CCSCEEEEEECC-----------CCSGG-GSS----SSEEEC
T ss_pred             HhhHhhCCEEEEEEeCCCCCCh--HHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHHH-cCC----CceEEe
Confidence            8889999999999998765433  33444455443   578999999999986431  12222222 111    134689


Q ss_pred             eccCC
Q 030848          166 SGYDG  170 (170)
Q Consensus       166 Sa~~g  170 (170)
                      ||++|
T Consensus       165 SA~~g  169 (456)
T 4dcu_A          165 SGTHG  169 (456)
T ss_dssp             CTTTC
T ss_pred             ecccc
Confidence            99876

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.78  E-value=2.4e-18  Score=136.38  Aligned_cols=132  Identities=20%  Similarity=0.212  Sum_probs=89.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCC------C-----C-CCC------cccCCcceeEEEEEecCeEEEEEEcC
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE------G-----L-PPD------RIVPTVGLNIGRIEVSNSKLVFWDLG   76 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~------~-----~-~~~------~~~~~~~~~~~~~~~~~~~~~i~D~~   76 (170)
                      .+..+|+++|++|+|||||++++........      .     . ...      ....++......+...+..+.+||||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP   90 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence            4568999999999999999999975211110      0     0 000      11123333344577788999999999


Q ss_pred             CCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC---HHHHHhHhC
Q 030848           77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLD  151 (170)
Q Consensus        77 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~---~~~~~~~~~  151 (170)
                      |++.+......+++.+|++|+|+|+++....+ ....+....    ..+.|+++++||+|+.....   .+++.+.+.
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~----~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~  163 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTR----LRDTPILTFMNKLDRDIRDPMELLDEVENELK  163 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHT----TTTCCEEEEEECTTSCCSCHHHHHHHHHHHHC
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHH----HcCCCEEEEEcCcCCccccHHHHHHHHHHHhC
Confidence            99999888888999999999999998764322 233333322    24789999999999987544   344444444

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.76  E-value=2.6e-17  Score=120.48  Aligned_cols=123  Identities=8%  Similarity=-0.008  Sum_probs=78.6

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh-------hHHH
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS-------IWEK   87 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~   87 (170)
                      ...++|+++|.+|+|||||+|++.+.......   .....+.......+...+..+.+|||||..++..       .+..
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~  113 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSIS---PFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKS  113 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCC---SSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccc---CCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHH
Confidence            46799999999999999999999862211111   1111222333345667788999999999765431       1122


Q ss_pred             H--hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCC-CCCcEEEEeeCCCcccc
Q 030848           88 Y--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL-QGAPLLILANKQDLPDA  140 (170)
Q Consensus        88 ~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~ii~v~nK~D~~~~  140 (170)
                      +  .+.+|++|+|+|++..........++..+...... ...|+++|+||+|+.++
T Consensus       114 ~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~  169 (270)
T 1h65_A          114 FLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP  169 (270)
T ss_dssp             HTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred             HhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence            2  24799999999987643222334555555433221 12699999999999653

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.75  E-value=6.2e-19  Score=133.97  Aligned_cols=146  Identities=16%  Similarity=0.250  Sum_probs=74.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC---CCcccCCcceeEEEEEe--c--CeEEEEEEcCCC-------Cc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP---PDRIVPTVGLNIGRIEV--S--NSKLVFWDLGGQ-------PG   80 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~--~~~~~i~D~~G~-------~~   80 (170)
                      ...++|+++|++|+|||||++++.+......+..   .....++++........  .  ...+.+|||||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            4568999999999999999999865211111000   00112344444333222  2  247999999997       55


Q ss_pred             chhhHH-------HHhhccC-------------EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030848           81 LRSIWE-------KYYEEAH-------------AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA  140 (170)
Q Consensus        81 ~~~~~~-------~~~~~~~-------------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~  140 (170)
                      +...+.       .+++.++             +++|+++.. ..++......+...+.    .+.|+++|+||+|+...
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~~  189 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTL  189 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCCH
Confidence            555444       5665543             455555432 3445444432222222    57899999999999763


Q ss_pred             CCH----HHHHhHhCccccccceeEEEeeeccCC
Q 030848          141 VSA----DELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       141 ~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ...    +++.+.++     ...++++++||++|
T Consensus       190 ~ev~~~k~~i~~~~~-----~~~i~~~~~Sa~~~  218 (361)
T 2qag_A          190 KERERLKKRILDEIE-----EHNIKIYHLPDAES  218 (361)
T ss_dssp             HHHHHHHHHHHHHTT-----CC-CCSCCCC----
T ss_pred             HHHHHHHHHHHHHHH-----HCCCCEEeCCCcCC
Confidence            322    23444444     45678999999875

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.74  E-value=7.9e-17  Score=131.37  Aligned_cols=122  Identities=17%  Similarity=0.110  Sum_probs=87.8

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCC------C--CCCC------cccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE------G--LPPD------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~------~--~~~~------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   80 (170)
                      ....+|+++|++|+|||||++++........      .  ...+      ....|+......+...+..+.+|||||+..
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d   89 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD   89 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence            4568999999999999999999974221110      0  0000      223455555566777889999999999999


Q ss_pred             chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC
Q 030848           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV  141 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~  141 (170)
                      +...+..+++.+|++|+|+|+++..+.+....| ..+..    .+.|+++++||+|+....
T Consensus        90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~~~~  145 (691)
T 1dar_A           90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK----YKVPRIAFANKMDKTGAD  145 (691)
T ss_dssp             CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCEEEEEECTTSTTCC
T ss_pred             hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHH-HHHHH----cCCCEEEEEECCCcccCC
Confidence            999999999999999999999988776654443 33333    378999999999998644

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.73  E-value=2.4e-17  Score=122.91  Aligned_cols=72  Identities=21%  Similarity=0.256  Sum_probs=48.2

Q ss_pred             cCeEEEEEEcCCCCc-------------chhhHHHHhhccCEEEEEEeCCCcccH-HHHHHHHHHHHcCCCCCCCcEEEE
Q 030848           66 SNSKLVFWDLGGQPG-------------LRSIWEKYYEEAHAVVFVIDAACPSRF-EDSKTALEKVLRNEDLQGAPLLIL  131 (170)
Q Consensus        66 ~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~ii~v  131 (170)
                      ....+.+|||||...             +......+++.+|++++|+|+.+.... .........+ .   ..+.|+++|
T Consensus       129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~-~---~~~~~~i~v  204 (315)
T 1jwy_B          129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV-D---PEGKRTIGV  204 (315)
T ss_dssp             TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH-C---SSCSSEEEE
T ss_pred             CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh-C---CCCCcEEEE
Confidence            346799999999643             445667788999999999997433211 1111222222 2   247899999


Q ss_pred             eeCCCccccC
Q 030848          132 ANKQDLPDAV  141 (170)
Q Consensus       132 ~nK~D~~~~~  141 (170)
                      +||+|+.+..
T Consensus       205 ~NK~Dl~~~~  214 (315)
T 1jwy_B          205 ITKLDLMDKG  214 (315)
T ss_dssp             EECTTSSCSS
T ss_pred             EcCcccCCcc
Confidence            9999997644

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.72  E-value=1.2e-16  Score=130.35  Aligned_cols=122  Identities=19%  Similarity=0.162  Sum_probs=87.5

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCC-------C-CCCC------cccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-------G-LPPD------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~-------~-~~~~------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   80 (170)
                      ....+|+++|++|+|||||++++........       + ...+      ....|+......+.+.+..+.+|||||+..
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d   87 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD   87 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence            4568999999999999999999974221110       0 0000      122344444556777889999999999999


Q ss_pred             chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC
Q 030848           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV  141 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~  141 (170)
                      +...+..+++.+|++|+|+|+++..+.+.... +..+..    .+.|+++++||+|+....
T Consensus        88 f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~-~~~~~~----~~~p~ilviNK~Dl~~~~  143 (693)
T 2xex_A           88 FTVEVERSLRVLDGAVTVLDAQSGVEPQTETV-WRQATT----YGVPRIVFVNKMDKLGAN  143 (693)
T ss_dssp             CCHHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHHHHH----TTCCEEEEEECTTSTTCC
T ss_pred             hHHHHHHHHHHCCEEEEEECCCCCCcHHHHHH-HHHHHH----cCCCEEEEEECCCccccc
Confidence            98888899999999999999998777655433 333433    378999999999998743

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.72  E-value=9.1e-17  Score=122.06  Aligned_cols=95  Identities=20%  Similarity=0.197  Sum_probs=61.2

Q ss_pred             CeEEEEEEcCCCCcc-------------hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 030848           67 NSKLVFWDLGGQPGL-------------RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN  133 (170)
Q Consensus        67 ~~~~~i~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~n  133 (170)
                      ...+.+|||||....             ......+++++|++|+|+|..+......  .+ ..+.......+.|+++|+|
T Consensus       135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~--~~-~~l~~~~~~~~~~~i~V~n  211 (360)
T 3t34_A          135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS--DA-IKISREVDPSGDRTFGVLT  211 (360)
T ss_dssp             SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC--HH-HHHHHHSCTTCTTEEEEEE
T ss_pred             CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH--HH-HHHHHHhcccCCCEEEEEe
Confidence            457999999996554             5567788899999999998765443321  11 1222223335679999999


Q ss_pred             CCCccccC--CHHHHHhHhCccccccceeEEEeeeccC
Q 030848          134 KQDLPDAV--SADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus       134 K~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      |+|+.++.  ..+......     .....+|+++|+++
T Consensus       212 K~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~s  244 (360)
T 3t34_A          212 KIDLMDKGTDAVEILEGRS-----FKLKYPWVGVVNRS  244 (360)
T ss_dssp             CGGGCCTTCCSHHHHTTSS-----SCCSSCCEEECCCC
T ss_pred             CCccCCCcccHHHHHcCcc-----ccccCCeEEEEECC
Confidence            99997632  222222222     23446788888765

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.71  E-value=6.3e-18  Score=129.77  Aligned_cols=87  Identities=20%  Similarity=0.233  Sum_probs=47.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEE-----------------Eec---CeEEEEEEcCC
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI-----------------EVS---NSKLVFWDLGG   77 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~---~~~~~i~D~~G   77 (170)
                      ++|+++|.+|+|||||+|++.+..............++.+......                 .+.   ..++.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            5899999999999999999987432111222222233333321110                 011   35799999999


Q ss_pred             CCcc----hhhHH---HHhhccCEEEEEEeCCCc
Q 030848           78 QPGL----RSIWE---KYYEEAHAVVFVIDAACP  104 (170)
Q Consensus        78 ~~~~----~~~~~---~~~~~~~~~i~v~d~~~~  104 (170)
                      ....    .....   .+++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            6431    22222   346899999999999875

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.71  E-value=5.5e-17  Score=134.77  Aligned_cols=121  Identities=13%  Similarity=0.054  Sum_probs=85.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCC------CC----CC--cccCCcceeEEEEEec---------------
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG------LP----PD--RIVPTVGLNIGRIEVS---------------   66 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~------~~----~~--~~~~~~~~~~~~~~~~---------------   66 (170)
                      .....+|+++|+.++|||||++++.........      ..    ..  ....|+......+.+.               
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            345679999999999999999999763221111      00    00  1112333333333332               


Q ss_pred             -CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           67 -NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        67 -~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                       +..+.+|||||+.++...+..+++.+|++|+|+|+++..+++....|. ....    .+.|+++++||+|+..
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~----~~~p~ilviNK~D~~~  164 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR-QALG----ERIKPVVVINKVDRAL  164 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCEEEEEEECHHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCeEEEEECCCcch
Confidence             678999999999999999999999999999999999988877654443 3322    4789999999999974

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.70  E-value=1.1e-15  Score=124.27  Aligned_cols=119  Identities=21%  Similarity=0.212  Sum_probs=86.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCC-------CCCCCc-------ccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-------GLPPDR-------IVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~-------~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   80 (170)
                      ....+|+++|+.|+|||||++++........       +.....       ...++......+......+.+|||||++.
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            4567899999999999999999975332211       000111       11233344445666788999999999999


Q ss_pred             chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP  138 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~  138 (170)
                      +...+..+++.+|++++|+|+++.-..+ ...++.....    .+.|+++++||+|+.
T Consensus        87 f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           87 FVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred             hHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecCCchh
Confidence            9988899999999999999988764433 3344444433    368999999999997

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.69  E-value=7.4e-17  Score=124.26  Aligned_cols=143  Identities=25%  Similarity=0.344  Sum_probs=94.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC-eEEEEEEcCCCCc-------chhhHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPG-------LRSIWEKYY   89 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~-------~~~~~~~~~   89 (170)
                      ..++++|++|+|||||++++.+..+...+.......+    ....+...+ ..+.+||+||..+       +...+....
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p----~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~  233 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSP----NLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHI  233 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCC----EEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecc----eeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHH
Confidence            3588999999999999999987543333333322222    333455554 7899999999643       112223334


Q ss_pred             hccCEEEEEEeCCCcccHHHHHHHHHHHHcCC-CCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNE-DLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+++.+++++|++ ...+..+..+..++.... .....|.++++||+|+......+++.+.++     ...++++++||+
T Consensus       234 era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~-----~~g~~vi~iSA~  307 (416)
T 1udx_A          234 ARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA-----REGLAVLPVSAL  307 (416)
T ss_dssp             TSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTSCEEECCTT
T ss_pred             HHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHH-----hcCCeEEEEECC
Confidence            6799999999998 566676666666665432 123578899999999976522333434433     334679999998


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       308 ~g  309 (416)
T 1udx_A          308 TG  309 (416)
T ss_dssp             TC
T ss_pred             Cc
Confidence            75

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.69  E-value=1.1e-16  Score=112.50  Aligned_cols=143  Identities=20%  Similarity=0.182  Sum_probs=83.4

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee--EEEEEecCeEEEEEEcCCCCc----------
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSKLVFWDLGGQPG----------   80 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~G~~~----------   80 (170)
                      .-....+++++|++|+|||||+|++.+...      .....++.+..  ...+...+ .+.+|||||...          
T Consensus        22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~------~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~   94 (210)
T 1pui_A           22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKS------LARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRK   94 (210)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------------CCEEEEEEET-TEEEEECCCCC------CCHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhCCCc------cccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHH
Confidence            345667999999999999999999976220      01111111111  11233333 688999999642          


Q ss_pred             chhhHHHHh---hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCH----HHHHhHhCcc
Q 030848           81 LRSIWEKYY---EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA----DELARYLDLK  153 (170)
Q Consensus        81 ~~~~~~~~~---~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~----~~~~~~~~~~  153 (170)
                      +......++   +.++++++++|++++.+.... . ......   ..+.|++++.||+|+.+....    ..+...+.  
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~-~~~~~~---~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~--  167 (210)
T 1pui_A           95 WQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ-Q-MIEWAV---DSNIAVLVLLTKADKLASGARKAQLNMVREAVL--  167 (210)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-H-HHHHHH---HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHG--
T ss_pred             HHHHHHHHHHhhhcccEEEEEEECCCCCchhHH-H-HHHHHH---HcCCCeEEEEecccCCCchhHHHHHHHHHHHHH--
Confidence            222233344   468899999999887665321 1 111111   146789999999998763322    23333332  


Q ss_pred             ccccceeEEEeeeccCC
Q 030848          154 KLDERVCMFEAVSGYDG  170 (170)
Q Consensus       154 ~~~~~~~~~~~~Sa~~g  170 (170)
                       .....+.++++||++|
T Consensus       168 -~~~~~~~~~~~Sal~~  183 (210)
T 1pui_A          168 -AFNGDVQVETFSSLKK  183 (210)
T ss_dssp             -GGCSCEEEEECBTTTT
T ss_pred             -hcCCCCceEEEeecCC
Confidence             1123578999999875

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.68  E-value=2e-16  Score=126.02  Aligned_cols=126  Identities=16%  Similarity=0.185  Sum_probs=80.5

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE----------------------------------
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----------------------------------   61 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------   61 (170)
                      ...+|+|+|.+|+|||||+|++.+....  .. .....+++.....                                  
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~--~~-~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~  140 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQEVP--GS-RVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL  140 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSCCS--SC-CCCSSCCCCSEEEEECCSSSEEECCC------------------CCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCccc--cC-ccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence            4579999999999999999999873211  00 0011111110000                                  


Q ss_pred             ----EEEecC---eEEEEEEcCCCCc-----------chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCC
Q 030848           62 ----RIEVSN---SKLVFWDLGGQPG-----------LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL  123 (170)
Q Consensus        62 ----~~~~~~---~~~~i~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  123 (170)
                          .+....   ..+.+|||||...           +......+++.+|++|+|+|+++....+....++..+..    
T Consensus       141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----  216 (550)
T 2qpt_A          141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----  216 (550)
T ss_dssp             TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----
T ss_pred             ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----
Confidence                000110   3689999999654           445667788999999999999876555555555544422    


Q ss_pred             CCCcEEEEeeCCCccccCCHHHHHh
Q 030848          124 QGAPLLILANKQDLPDAVSADELAR  148 (170)
Q Consensus       124 ~~~~ii~v~nK~D~~~~~~~~~~~~  148 (170)
                      .+.|+++|+||+|+.+.....+..+
T Consensus       217 ~~~pvilVlNK~Dl~~~~el~~~~~  241 (550)
T 2qpt_A          217 HEDKIRVVLNKADMVETQQLMRVYG  241 (550)
T ss_dssp             CGGGEEEEEECGGGSCHHHHHHHHH
T ss_pred             cCCCEEEEEECCCccCHHHHHHHHH
Confidence            3578999999999976444444433

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.68  E-value=2.6e-16  Score=128.43  Aligned_cols=69  Identities=19%  Similarity=0.311  Sum_probs=50.7

Q ss_pred             eEEEEEEcCCCCc---chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030848           68 SKLVFWDLGGQPG---LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA  140 (170)
Q Consensus        68 ~~~~i~D~~G~~~---~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~  140 (170)
                      ..+.+|||||...   .......+++.+|++|+|+|++++.+..+...+...+ ..   .+.|+++|+||+|+.+.
T Consensus       174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l-~~---~~~~iiiVlNK~Dl~~~  245 (695)
T 2j69_A          174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI-KG---RGLTVFFLVNAWDQVRE  245 (695)
T ss_dssp             TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT-TT---SCCCEEEEEECGGGGGG
T ss_pred             CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH-Hh---hCCCEEEEEECcccccc
Confidence            4699999999433   3455567889999999999999887776654443232 21   35689999999999753

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.67  E-value=4.5e-16  Score=117.99  Aligned_cols=99  Identities=21%  Similarity=0.185  Sum_probs=56.1

Q ss_pred             CeEEEEEEcCCCC-------------cchhhHHHHhhccCE-EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 030848           67 NSKLVFWDLGGQP-------------GLRSIWEKYYEEAHA-VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA  132 (170)
Q Consensus        67 ~~~~~i~D~~G~~-------------~~~~~~~~~~~~~~~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~  132 (170)
                      ...+.+|||||..             .+..+...+++..+. +++|+|++....-.....++..+    ...+.|+++|+
T Consensus       129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~----~~~~~~~i~V~  204 (353)
T 2x2e_A          129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEV----DPQGQRTIGVI  204 (353)
T ss_dssp             CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHH----CTTCTTEEEEE
T ss_pred             CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHh----CcCCCceEEEe
Confidence            4679999999942             234466667766664 45566665432222222233332    22578999999


Q ss_pred             eCCCccccCC-HHHHHhHhCccccccceeEEEeeeccCC
Q 030848          133 NKQDLPDAVS-ADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       133 nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ||+|+.++.. ..+..+. +.........+++++||++|
T Consensus       205 NK~Dl~~~~~~~~~~~~~-~~~~l~~~~~~v~~~SA~~~  242 (353)
T 2x2e_A          205 TKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDI  242 (353)
T ss_dssp             ECGGGSCTTCCCHHHHTT-CSSCCTTCEEECCCCCHHHH
T ss_pred             ccccccCcchhHHHHHhC-CcccccCCceEEEeCCcccc
Confidence            9999976433 2222221 11111122457889999864

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.66  E-value=2.6e-15  Score=122.70  Aligned_cols=121  Identities=18%  Similarity=0.055  Sum_probs=85.4

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCC-------CC-CC------cccCCcceeEEEEEecC-------eEEEEE
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG-------LP-PD------RIVPTVGLNIGRIEVSN-------SKLVFW   73 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~-------~~-~~------~~~~~~~~~~~~~~~~~-------~~~~i~   73 (170)
                      ....+|+++|+.|+|||||++++.........       .. .+      ....|+......+.+.+       ..+.+|
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li   87 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII   87 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence            45679999999999999999999652111110       00 00      11223433334455555       889999


Q ss_pred             EcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030848           74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA  140 (170)
Q Consensus        74 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~  140 (170)
                      ||||+..+...+..+++.+|++|+|+|+++....+.. ..+.....    .+.|+++++||+|+...
T Consensus        88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~~~~~----~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWRQANK----YKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHHHHHH----cCCCEEEEEeCCCcccc
Confidence            9999999988889999999999999999987654433 33333322    47899999999999764

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.64  E-value=7.9e-15  Score=110.91  Aligned_cols=82  Identities=22%  Similarity=0.327  Sum_probs=55.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC-----------------eEEEEEEcCCCCc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGGQPG   80 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~D~~G~~~   80 (170)
                      ++|+++|.+|+|||||+|++.+..............++.+    .+.+.+                 ..+.+|||||...
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g----~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~   78 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG----VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVA   78 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS----EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE----EEecCCcccceeeeeecccceeeeEEEEEECCCCcc
Confidence            6899999999999999999987332222222223333333    233332                 5799999999765


Q ss_pred             ch-------hhHHHHhhccCEEEEEEeCCC
Q 030848           81 LR-------SIWEKYYEEAHAVVFVIDAAC  103 (170)
Q Consensus        81 ~~-------~~~~~~~~~~~~~i~v~d~~~  103 (170)
                      ..       ..+..+++++|++++|+|+++
T Consensus        79 ~a~~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           79 GASKGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             THHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence            42       234456799999999999986

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.58  E-value=2e-14  Score=109.18  Aligned_cols=84  Identities=24%  Similarity=0.301  Sum_probs=57.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE-------------------ecCeEEEEEEcCCC
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE-------------------VSNSKLVFWDLGGQ   78 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~i~D~~G~   78 (170)
                      ++|+++|.+|+|||||+|++.+...........+..++.+..  .+.                   ..+..+.+|||||.
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~--~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV--PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE--ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE--ecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            579999999999999999998753322323233344444432  111                   12457999999996


Q ss_pred             Ccc-------hhhHHHHhhccCEEEEEEeCCC
Q 030848           79 PGL-------RSIWEKYYEEAHAVVFVIDAAC  103 (170)
Q Consensus        79 ~~~-------~~~~~~~~~~~~~~i~v~d~~~  103 (170)
                      ...       ...+...++.+|++++|+|+++
T Consensus        80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            542       3344556799999999999975

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.58  E-value=2e-15  Score=114.45  Aligned_cols=93  Identities=14%  Similarity=0.039  Sum_probs=58.4

Q ss_pred             cCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHH
Q 030848           66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADE  145 (170)
Q Consensus        66 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~  145 (170)
                      .+..+.+|||||-..   .....++.+|++|+|+|+......+.+.       .  ...+.|+++|+||+|+.+......
T Consensus       170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~-------~--~~~~~p~ivVlNK~Dl~~~~~~~~  237 (355)
T 3p32_A          170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK-------K--GVLELADIVVVNKADGEHHKEARL  237 (355)
T ss_dssp             TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC-------T--TSGGGCSEEEEECCCGGGHHHHHH
T ss_pred             CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH-------H--hHhhcCCEEEEECCCCcChhHHHH
Confidence            467899999999433   2233458999999999987654432211       1  112458899999999976433333


Q ss_pred             HHhHhCc----ccc--ccceeEEEeeeccCC
Q 030848          146 LARYLDL----KKL--DERVCMFEAVSGYDG  170 (170)
Q Consensus       146 ~~~~~~~----~~~--~~~~~~~~~~Sa~~g  170 (170)
                      ..+.+..    ...  ....++++++||++|
T Consensus       238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g  268 (355)
T 3p32_A          238 AARELSAAIRLIYPREALWRPPVLTMSAVEG  268 (355)
T ss_dssp             HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGT
T ss_pred             HHHHHHHHHhhccccccCCCCceEEEEcCCC
Confidence            2222221    110  122468999999986

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.57  E-value=4.2e-14  Score=112.61  Aligned_cols=131  Identities=18%  Similarity=0.177  Sum_probs=92.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccC----------------CCCC--CCcccCCcceeEEEEEecCeEEEEEEcCC
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNV----------------EGLP--PDRIVPTVGLNIGRIEVSNSKLVFWDLGG   77 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~----------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   77 (170)
                      +.-+|+|+|+.++|||||..+|+.....+                .+..  .....-|+......+.+++..++|+||||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG  109 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG  109 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence            34689999999999999999995321110                0000  11122355555667889999999999999


Q ss_pred             CCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC---HHHHHhHhC
Q 030848           78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLD  151 (170)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~---~~~~~~~~~  151 (170)
                      +.+|.......++-+|++|+|+|+...-.-+. ...|.....    .+.|.++++||+|.+....   .+++.+.+.
T Consensus       110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT-~~v~~~a~~----~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~  181 (548)
T 3vqt_A          110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQT-RKLMDVCRM----RATPVMTFVNKMDREALHPLDVMADIEQHLQ  181 (548)
T ss_dssp             GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHH-HHHHHHHHH----TTCCEEEEEECTTSCCCCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHhcCceEEEeecCCCccccc-HHHHHHHHH----hCCceEEEEecccchhcchhHhhhhhhhhcC
Confidence            99999999999999999999999987655443 344444444    4889999999999987443   344444444

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.56  E-value=1.3e-14  Score=110.26  Aligned_cols=117  Identities=21%  Similarity=0.206  Sum_probs=80.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC-------cchhhHHHH
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-------GLRSIWEKY   88 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------~~~~~~~~~   88 (170)
                      ...+|+++|.|++|||||+|++.+....+.+..    ..|.......+.+.+.+++++||||-.       .....+...
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~p----ftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~  146 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYE----FTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAV  146 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTC----SSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCC----CceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHH
Confidence            346899999999999999999987544333332    234445555688899999999999922       223344556


Q ss_pred             hhccCEEEEEEeCCCcccHHHHHHHHHHHHcC-CCCCCCcEEEEeeCCCcc
Q 030848           89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRN-EDLQGAPLLILANKQDLP  138 (170)
Q Consensus        89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~ii~v~nK~D~~  138 (170)
                      ++.+|++++|+|+++|..  .......++... ....+.|.++++||.|..
T Consensus       147 i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          147 ARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             HHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred             HHhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence            789999999999998632  222222222211 122456788999999974

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.56  E-value=3.3e-15  Score=110.88  Aligned_cols=145  Identities=15%  Similarity=0.241  Sum_probs=70.6

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhh-cccCCCCCC--CcccCCcceeEEEEE----ecCeEEEEEEcCCC-------Cc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSV-YSNVEGLPP--DRIVPTVGLNIGRIE----VSNSKLVFWDLGGQ-------PG   80 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~-~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~i~D~~G~-------~~   80 (170)
                      .-.++|+++|++|+|||||++++.+. .....+...  ....++.......+.    .....+.+||++|.       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            35689999999999999999998652 111111000  000112221111111    22457999999997       44


Q ss_pred             chhhHH-------HHhhcc-------------CEEEEEEeCCCcccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           81 LRSIWE-------KYYEEA-------------HAVVFVIDAACPSRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        81 ~~~~~~-------~~~~~~-------------~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      +.....       .+++..             ++++|+.+++. .+++... ..+..+    . .+.++++|+||.|+..
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l----~-~~~~iilV~~K~Dl~~  169 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI----H-NKVNIVPVIAKADTLT  169 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH----T-TTSCEEEEECCGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH----H-hcCCEEEEEEeCCCCC
Confidence            444433       444432             33555555432 1233222 222222    1 4678999999999975


Q ss_pred             cCC----HHHHHhHhCccccccceeEEEeeeccCC
Q 030848          140 AVS----ADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       140 ~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ...    .+++.+.++     ...++++++||++|
T Consensus       170 ~~e~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~  199 (301)
T 2qnr_A          170 LKERERLKKRILDEIE-----EHNIKIYHLPDAES  199 (301)
T ss_dssp             HHHHHHHHHHHHHHHH-----HTTCCCCCCC----
T ss_pred             HHHHHHHHHHHHHHHH-----HcCCeEEecCCccc
Confidence            322    234444444     44578999999875

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.52  E-value=9.6e-15  Score=112.57  Aligned_cols=146  Identities=16%  Similarity=0.198  Sum_probs=71.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC--CCcccCCcceeEEEEE----ecCeEEEEEEcCCCCcch------
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP--PDRIVPTVGLNIGRIE----VSNSKLVFWDLGGQPGLR------   82 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~i~D~~G~~~~~------   82 (170)
                      .-.++|+++|++|+|||||++++.+......+..  .....++.......+.    .....+.+||++|.....      
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            3457899999999999999999987432111110  0011223322211111    122468999999965421      


Q ss_pred             -hh-------HHHH-----------hhccCEEEEEEeCCCc-ccHHHHH-HHHHHHHcCCCCCCCcEEEEeeCCCccccC
Q 030848           83 -SI-------WEKY-----------YEEAHAVVFVIDAACP-SRFEDSK-TALEKVLRNEDLQGAPLLILANKQDLPDAV  141 (170)
Q Consensus        83 -~~-------~~~~-----------~~~~~~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~  141 (170)
                       ..       ...+           ++++++.+++|+.... .++.... .++..+.     .+.|+|+|+||+|+....
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~~  183 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTPE  183 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccHH
Confidence             11       1112           2344443444443332 2343333 4444442     368999999999986532


Q ss_pred             CH----HHHHhHhCccccccceeEEEeeeccCC
Q 030848          142 SA----DELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       142 ~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ..    .++.+.+.     ..+++++++||+++
T Consensus       184 ev~~~k~~i~~~~~-----~~~i~~~~~sa~~~  211 (418)
T 2qag_C          184 ECQQFKKQIMKEIQ-----EHKIKIYEFPETDD  211 (418)
T ss_dssp             HHHHHHHHHHHHHH-----HHTCCCCCCC----
T ss_pred             HHHHHHHHHHHHHH-----HcCCeEEeCCCCCC
Confidence            22    23333333     34566778887653

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.51  E-value=1.4e-14  Score=109.54  Aligned_cols=93  Identities=15%  Similarity=0.076  Sum_probs=51.3

Q ss_pred             cCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCH--
Q 030848           66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSA--  143 (170)
Q Consensus        66 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~--  143 (170)
                      .+..+.++||||-...   .......+|++++|+|++.+...+....   .+      .+.|.++++||+|+.+....  
T Consensus       165 ~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~~~  232 (349)
T 2www_A          165 AGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPARR  232 (349)
T ss_dssp             TTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHH
T ss_pred             CCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhHHH
Confidence            4678999999994322   2334578999999999886533221111   11      23477999999999753221  


Q ss_pred             --HHHHhHhCcccc--ccceeEEEeeeccCC
Q 030848          144 --DELARYLDLKKL--DERVCMFEAVSGYDG  170 (170)
Q Consensus       144 --~~~~~~~~~~~~--~~~~~~~~~~Sa~~g  170 (170)
                        .+....++....  .....+++++||++|
T Consensus       233 ~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g  263 (349)
T 2www_A          233 IQAEYVSALKLLRKRSQVWKPKVIRISARSG  263 (349)
T ss_dssp             HHHHHHHHHTTCC-----CCCEEEECCTTTC
T ss_pred             HHHHHHHHHHhcCccccCCCceEEEEecCCC
Confidence              122222221110  112467899999986

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.51  E-value=1.6e-14  Score=107.24  Aligned_cols=111  Identities=13%  Similarity=0.069  Sum_probs=81.0

Q ss_pred             CcccCCcceeEEEEEe-cCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcc-cHHHHHHHHHHHHcCCCCCCCc
Q 030848           50 DRIVPTVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS-RFEDSKTALEKVLRNEDLQGAP  127 (170)
Q Consensus        50 ~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~  127 (170)
                      ..+.||++..+. ... .+..+.+||+  ++++..++..+++++|++|+|+|++++. ++..+..|+..+..    .+.|
T Consensus        45 ~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~----~~~p  117 (301)
T 1u0l_A           45 QNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELE  117 (301)
T ss_dssp             TTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCE
T ss_pred             cCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCC
Confidence            456678886544 322 2347999999  8888888889999999999999999987 67877788776644    4789


Q ss_pred             EEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848          128 LLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       128 ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +++|+||+|+.+....++..+.++...  .. +++++|||++|
T Consensus       118 iilv~NK~DL~~~~~v~~~~~~~~~~~--~~-~~~~~~SAktg  157 (301)
T 1u0l_A          118 TVMVINKMDLYDEDDLRKVRELEEIYS--GL-YPIVKTSAKTG  157 (301)
T ss_dssp             EEEEECCGGGCCHHHHHHHHHHHHHHT--TT-SCEEECCTTTC
T ss_pred             EEEEEeHHHcCCchhHHHHHHHHHHHh--hh-CcEEEEECCCC
Confidence            999999999975322223333333111  12 68999999986

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.50  E-value=4.8e-13  Score=109.39  Aligned_cols=98  Identities=20%  Similarity=0.144  Sum_probs=60.1

Q ss_pred             eEEEEEEcCCCCc-------------chhhHHHHh-hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 030848           68 SKLVFWDLGGQPG-------------LRSIWEKYY-EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN  133 (170)
Q Consensus        68 ~~~~i~D~~G~~~-------------~~~~~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~n  133 (170)
                      .++.++||||--.             .......++ ..+|++++|+|++.+...++.......+.    ..+.|+++|+|
T Consensus       150 ~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~----~~g~pvIlVlN  225 (772)
T 3zvr_A          150 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGVIT  225 (772)
T ss_dssp             CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC----TTCSSEEEEEE
T ss_pred             CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH----hcCCCEEEEEe
Confidence            4689999999322             223444444 47899999999987644333323333332    24689999999


Q ss_pred             CCCccccCCH-HHHHhHhCccccccceeEEEeeeccCC
Q 030848          134 KQDLPDAVSA-DELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       134 K~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      |+|+.++... ..+.+ -+.........+++++||++|
T Consensus       226 KiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G  262 (772)
T 3zvr_A          226 KLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDI  262 (772)
T ss_dssp             CTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEES
T ss_pred             CcccCCcchhhHHHHH-HHhhhhhccCCceEEeccccc
Confidence            9999864332 22222 111112234567899999876

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.49  E-value=4.5e-14  Score=99.96  Aligned_cols=144  Identities=16%  Similarity=0.102  Sum_probs=82.9

Q ss_pred             hccCceeEEEEEcCCCCChHHHHHHHHhhcccCC-----CCCCCccc-----CCcceeEEEE------------------
Q 030848           12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-----GLPPDRIV-----PTVGLNIGRI------------------   63 (170)
Q Consensus        12 ~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~-----~~~~~~~~-----~~~~~~~~~~------------------   63 (170)
                      .......+++++|.+|+|||||++++........     ...+....     ...+.....+                  
T Consensus        25 ~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (221)
T 2wsm_A           25 LRESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLK  104 (221)
T ss_dssp             HHHHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGG
T ss_pred             hcccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHH
Confidence            3344667999999999999999999976421110     00110000     0001111111                  


Q ss_pred             EecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--C
Q 030848           64 EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--V  141 (170)
Q Consensus        64 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~  141 (170)
                      ...+..+.+|||+|+......   +....+.+++|+|+.+.....  .. +...      .+.|+++++||+|+.+.  .
T Consensus       105 ~~~~~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~~~--~~-~~~~------~~~~~iiv~NK~Dl~~~~~~  172 (221)
T 2wsm_A          105 KFSDCDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDDVV--EK-HPEI------FRVADLIVINKVALAEAVGA  172 (221)
T ss_dssp             GGTTCSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTTHH--HH-CHHH------HHTCSEEEEECGGGHHHHTC
T ss_pred             hcCCCCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcchhh--hh-hhhh------hhcCCEEEEecccCCcchhh
Confidence            123467899999995111111   112467899999987653211  11 1111      14678999999999753  4


Q ss_pred             CHHHHHhHhCccccccceeEEEeeeccCC
Q 030848          142 SADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ..++..+.++..   ...++++++||++|
T Consensus       173 ~~~~~~~~~~~~---~~~~~i~~~Sa~~g  198 (221)
T 2wsm_A          173 DVEKMKADAKLI---NPRAKIIEMDLKTG  198 (221)
T ss_dssp             CHHHHHHHHHHH---CTTSEEEECBTTTT
T ss_pred             HHHHHHHHHHHh---CCCCeEEEeecCCC
Confidence            666666666522   12468999999986

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.46  E-value=1.4e-13  Score=111.47  Aligned_cols=120  Identities=19%  Similarity=0.186  Sum_probs=86.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCC-------C-CCCc------ccCCcceeEEEEEecCeEEEEEEcCCCCcchh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEG-------L-PPDR------IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS   83 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~-------~-~~~~------~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   83 (170)
                      .||+++|+.++|||||..+++.....+..       . ..+.      ..-|+......+.+++..++++||||+.+|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            47899999999999999999543222111       0 0000      11244444445777889999999999999999


Q ss_pred             hHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC
Q 030848           84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS  142 (170)
Q Consensus        84 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~  142 (170)
                      .....++-+|++|+|+|+...-.-+ +...|.....    .+.|.++++||+|.+....
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~q-T~~v~~~a~~----~~lp~i~~INKmDr~~a~~  136 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQ-TRILFHALRK----MGIPTIFFINKIDQNGIDL  136 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSH-HHHHHHHHHH----HTCSCEECCEECCSSSCCS
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHH-HHHHHHHHHH----cCCCeEEEEeccccccCCH
Confidence            9999999999999999998664433 3344444433    3678899999999887543

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.45  E-value=1.3e-13  Score=100.03  Aligned_cols=73  Identities=21%  Similarity=0.058  Sum_probs=43.5

Q ss_pred             eEEEEEEcCCCCcchhhH------HHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC
Q 030848           68 SKLVFWDLGGQPGLRSIW------EKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV  141 (170)
Q Consensus        68 ~~~~i~D~~G~~~~~~~~------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~  141 (170)
                      ..+.+|||||..+.....      ...+.+ +++++++|+.......................+.|+++++||+|+.+..
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            479999999987653321      124456 8889999876543333322221111111111367899999999997643

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.44  E-value=1e-13  Score=104.52  Aligned_cols=93  Identities=14%  Similarity=0.062  Sum_probs=53.7

Q ss_pred             cCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHH-
Q 030848           66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSAD-  144 (170)
Q Consensus        66 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~-  144 (170)
                      .+..+.+|||||.......   ..+.+|++++|+|++.....+....   ..      .+.|.++++||+|+.+..... 
T Consensus       147 ~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~~~~  214 (341)
T 2p67_A          147 AGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTNVAI  214 (341)
T ss_dssp             TTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHHHHH
T ss_pred             cCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHHHHH
Confidence            3678999999996554332   4589999999999875432111100   00      135789999999997642222 


Q ss_pred             ---HHHhHhCcccc--ccceeEEEeeeccCC
Q 030848          145 ---ELARYLDLKKL--DERVCMFEAVSGYDG  170 (170)
Q Consensus       145 ---~~~~~~~~~~~--~~~~~~~~~~Sa~~g  170 (170)
                         ++.+.+.....  ..+..+++++||++|
T Consensus       215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g  245 (341)
T 2p67_A          215 ARHMYESALHILRRKYDEWQPRVLTCSALEK  245 (341)
T ss_dssp             HHHHHHHHHHHSCCSBTTBCCEEEECBGGGT
T ss_pred             HHHHHHHHHHhccccccCCCCcEEEeeCCCC
Confidence               22222211111  112468999999986

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.44  E-value=2.7e-12  Score=105.18  Aligned_cols=130  Identities=19%  Similarity=0.134  Sum_probs=85.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcc------cCCC-C-CCC------cccCCcceeEEEEEec-------CeEEEEEEc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYS------NVEG-L-PPD------RIVPTVGLNIGRIEVS-------NSKLVFWDL   75 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~------~~~~-~-~~~------~~~~~~~~~~~~~~~~-------~~~~~i~D~   75 (170)
                      .-+|+|+|+.++|||||..+|+....      .... . ..+      ...-|+......+.++       +..++++||
T Consensus        13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT   92 (709)
T 4fn5_A           13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT   92 (709)
T ss_dssp             EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence            35799999999999999999953211      1111 0 000      1112333333334443       578999999


Q ss_pred             CCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC---CHHHHHhHhC
Q 030848           76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV---SADELARYLD  151 (170)
Q Consensus        76 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~---~~~~~~~~~~  151 (170)
                      ||+.+|.......++-+|++|+|+|+...-..+ +...|.+...    .+.|.++++||+|.+...   ..+++.+.+.
T Consensus        93 PGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~q-T~~v~~~a~~----~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~  166 (709)
T 4fn5_A           93 PGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQ-SETVWRQANK----YGVPRIVYVNKMDRQGANFLRVVEQIKKRLG  166 (709)
T ss_dssp             CSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----HTCCEEEEEECSSSTTCCHHHHHHHHHHHHC
T ss_pred             CCCcccHHHHHHHHHHhCeEEEEEECCCCCchh-HHHHHHHHHH----cCCCeEEEEccccccCccHHHHHHHhhhhcc
Confidence            999999999999999999999999998765433 3344444444    478999999999987643   3445555444

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.41  E-value=1.2e-12  Score=91.31  Aligned_cols=93  Identities=18%  Similarity=0.178  Sum_probs=69.6

Q ss_pred             CCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHH---HHHHcCCC-CCCCcEEEEeeCC-CccccCCHHHHHhHh
Q 030848           76 GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL---EKVLRNED-LQGAPLLILANKQ-DLPDAVSADELARYL  150 (170)
Q Consensus        76 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~~ii~v~nK~-D~~~~~~~~~~~~~~  150 (170)
                      +||+.++.+|..|++++|++|||+|.+|.+.++ .+.-+   ..++.... ..+.|++|+.||. |++++.+..++.+.+
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L  188 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHEL  188 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHT
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHc
Confidence            378899999999999999999999999886654 33333   33333322 3678999999995 899999999999999


Q ss_pred             CccccccceeEEEeeeccCC
Q 030848          151 DLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       151 ~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ..... .+.+.+.+|||++|
T Consensus       189 ~L~~l-~R~W~Iq~csA~TG  207 (227)
T 3l82_B          189 HLNLL-NHPWLVQDTEAETL  207 (227)
T ss_dssp             TGGGG-CSCEEEEEEETTTC
T ss_pred             CCcCC-CCCEEEEEeECCCC
Confidence            97766 48999999999987

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.27  E-value=6.8e-12  Score=95.83  Aligned_cols=87  Identities=20%  Similarity=0.248  Sum_probs=50.8

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec-----------------CeEEEEEEcCC
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-----------------NSKLVFWDLGG   77 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~i~D~~G   77 (170)
                      ...++++++|.+|+|||||+|++.+..........    .|...+...+.+.                 +..+.+|||||
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~----tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpG   95 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPF----CTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAG   95 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-----------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCc----cccCceeEEEEECCccceeeccccCcccccccccEEEECCC
Confidence            45689999999999999999999873221111111    1222222233332                 23599999999


Q ss_pred             CCcch-------hhHHHHhhccCEEEEEEeCCCcc
Q 030848           78 QPGLR-------SIWEKYYEEAHAVVFVIDAACPS  105 (170)
Q Consensus        78 ~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~  105 (170)
                      .....       ..+..+++++|++++|+|+++..
T Consensus        96 l~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~  130 (396)
T 2ohf_A           96 LVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDD  130 (396)
T ss_dssp             -----------CCHHHHHHHTSSSEEEEEEC----
T ss_pred             cccccchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence            65533       25667789999999999997543

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.26  E-value=1.9e-11  Score=92.02  Aligned_cols=144  Identities=17%  Similarity=0.162  Sum_probs=75.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCC------CCCc----------------ccCCcceeEE-----------
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL------PPDR----------------IVPTVGLNIG-----------   61 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~------~~~~----------------~~~~~~~~~~-----------   61 (170)
                      .+...++++|++|+|||||++++.+......+.      ....                ..........           
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~  132 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV  132 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence            455789999999999999999997532211110      0000                0000001000           


Q ss_pred             ---------EEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEe
Q 030848           62 ---------RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA  132 (170)
Q Consensus        62 ---------~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~  132 (170)
                               .+...+..+.++||||-.....   .....+|.+++++|+......+......         .+.+.++++
T Consensus       133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivvl  200 (337)
T 2qm8_A          133 AAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIAV  200 (337)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTH---------HHHCSEEEE
T ss_pred             HHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEEE
Confidence                     0122467899999999543322   2347899999999986442211111100         123457778


Q ss_pred             eCCCcccc-CC----HHHHHhHhCcccc--ccceeEEEeeeccCC
Q 030848          133 NKQDLPDA-VS----ADELARYLDLKKL--DERVCMFEAVSGYDG  170 (170)
Q Consensus       133 nK~D~~~~-~~----~~~~~~~~~~~~~--~~~~~~~~~~Sa~~g  170 (170)
                      ||+|+... ..    ..++...+.....  .....+++.+||++|
T Consensus       201 NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g  245 (337)
T 2qm8_A          201 NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHG  245 (337)
T ss_dssp             ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTT
T ss_pred             EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCC
Confidence            99997431 11    1222222211110  012357888999876

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.24  E-value=1.6e-11  Score=89.52  Aligned_cols=94  Identities=19%  Similarity=0.192  Sum_probs=73.3

Q ss_pred             cCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHH---HHHcCCC-CCCCcEEEEeeC-CCccccCCHHHHHhH
Q 030848           75 LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALE---KVLRNED-LQGAPLLILANK-QDLPDAVSADELARY  149 (170)
Q Consensus        75 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~---~~~~~~~-~~~~~ii~v~nK-~D~~~~~~~~~~~~~  149 (170)
                      .+||+.++..|..|+.++|++|||+|.+|.+.++ .+.-+.   .++.... ..+.|++|+.|| .|++++.+..++.+.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~  272 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  272 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence            4578999999999999999999999999987654 322222   3332211 257899999996 699999999999999


Q ss_pred             hCccccccceeEEEeeeccCC
Q 030848          150 LDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       150 ~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +...... +.+.+.+|||++|
T Consensus       273 L~L~~l~-r~W~Iq~csA~tG  292 (312)
T 3l2o_B          273 LHLNLLN-HPWLVQDTEAETL  292 (312)
T ss_dssp             TTGGGGC-SCEEEEEEETTTC
T ss_pred             cCCccCC-CcEEEEecccCCC
Confidence            9977664 7999999999997

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.18  E-value=1.1e-12  Score=92.99  Aligned_cols=43  Identities=21%  Similarity=0.075  Sum_probs=30.5

Q ss_pred             CCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848          125 GAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       125 ~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +.|.++++||+|+.+.  ...++..+.++..   ...++++++||++|
T Consensus       164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~g  208 (226)
T 2hf9_A          164 KTADLIVINKIDLADAVGADIKKMENDAKRI---NPDAEVVLLSLKTM  208 (226)
T ss_dssp             TTCSEEEEECGGGHHHHTCCHHHHHHHHHHH---CTTSEEEECCTTTC
T ss_pred             hcCCEEEEeccccCchhHHHHHHHHHHHHHh---CCCCeEEEEEecCC
Confidence            3567999999999763  4566666655421   12468999999986

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.16  E-value=7.8e-12  Score=95.19  Aligned_cols=129  Identities=12%  Similarity=0.129  Sum_probs=73.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcc-------h-hhHHHH
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL-------R-SIWEKY   88 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~-~~~~~~   88 (170)
                      ..+++++|.+|+|||||+|++.+..............+.+......+... ..+.++||||-...       . .....+
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~  240 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLKII  240 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHHH
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHHHH
Confidence            35899999999999999999987421111111111122222222233332 34899999993211       1 122223


Q ss_pred             h--hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC
Q 030848           89 Y--EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD  151 (170)
Q Consensus        89 ~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~  151 (170)
                      +  +..+.+++++++.+.-.+..+..     +......+.|+++++||.|.......+...+.++
T Consensus       241 ~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~  300 (369)
T 3ec1_A          241 TPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHRTKLEKADSLYA  300 (369)
T ss_dssp             SCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHH
T ss_pred             hcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCcccccccHHHHHHHHH
Confidence            2  67899999998754322221111     2223335689999999999876544444444433

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.15  E-value=2.1e-10  Score=88.40  Aligned_cols=141  Identities=18%  Similarity=0.254  Sum_probs=68.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC----eEEEEEEcCCCCcc-----------
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN----SKLVFWDLGGQPGL-----------   81 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~D~~G~~~~-----------   81 (170)
                      .++++++|++|+|||||+|.|.+..  ..+.......+........+..+.    ..+.++|++|-...           
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~--l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~  119 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTK--FEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIV  119 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSC--C-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCcc--ccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHH
Confidence            3569999999999999999998742  111111111111111111111121    26899999983211           


Q ss_pred             ---hhhHHHHhh-------------c--cCEEE-EEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC
Q 030848           82 ---RSIWEKYYE-------------E--AHAVV-FVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS  142 (170)
Q Consensus        82 ---~~~~~~~~~-------------~--~~~~i-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~  142 (170)
                         ...+..++.             +  +|+++ ++.|...+-+..+     ..++.... .+.|+|+++||+|...+..
T Consensus       120 ~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-----ieilk~L~-~~~~vI~Vi~KtD~Lt~~E  193 (427)
T 2qag_B          120 EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-----LVTMKKLD-SKVNIIPIIAKADAISKSE  193 (427)
T ss_dssp             HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-----HHHHHHTC-SCSEEEEEESCGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-----HHHHHHHh-hCCCEEEEEcchhccchHH
Confidence               112222211             1  23444 4555543322222     13333222 5789999999999876444


Q ss_pred             HHHHHhHhCccccccceeEEEeee
Q 030848          143 ADELARYLDLKKLDERVCMFEAVS  166 (170)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~S  166 (170)
                      .....+.+.. .+...+++++.+|
T Consensus       194 ~~~l~~~I~~-~L~~~gi~I~~is  216 (427)
T 2qag_B          194 LTKFKIKITS-ELVSNGVQIYQFP  216 (427)
T ss_dssp             HHHHHHHHHH-HHBTTBCCCCCCC
T ss_pred             HHHHHHHHHH-HHHHcCCcEEecC
Confidence            4444333331 1223444555444

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.09  E-value=4.4e-11  Score=91.02  Aligned_cols=129  Identities=12%  Similarity=0.153  Sum_probs=72.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccC-CCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcc-------h-hhHHH
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNV-EGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL-------R-SIWEK   87 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~-~~~~~   87 (170)
                      ..+++++|.+|+|||||+|++.+..... .........+.+......+... ..+.++||||-...       . .....
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~  238 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-EESSLYDTPGIINHHQMAHYVGKQSLKL  238 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-SSCEEEECCCBCCTTSGGGGSCHHHHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-CCeEEEeCCCcCcHHHHHHHhhHHHHHH
Confidence            4689999999999999999998743211 0011011111111222223332 23899999993211       1 11222


Q ss_pred             H--hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhC
Q 030848           88 Y--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLD  151 (170)
Q Consensus        88 ~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~  151 (170)
                      +  .+..+.+++++++.+.-....+..     +......+.|+++++||+|.......+...+.++
T Consensus       239 ~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~  299 (368)
T 3h2y_A          239 ITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYK  299 (368)
T ss_dssp             HSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHH
T ss_pred             hccccccCceEEEEcCCCEEEEcceEE-----EEEecCCCceEEEEecCccccccccHHHHHHHHH
Confidence            2  256788899998753322221110     2222335689999999999987666666655554

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.06  E-value=1.1e-09  Score=83.84  Aligned_cols=84  Identities=21%  Similarity=0.347  Sum_probs=57.3

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcc-cCCCCCCCcccCCcceeEEEEEecC-----------------eEEEEEEcCC
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGG   77 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~D~~G   77 (170)
                      ...+++++|++|+|||||+|++.+... ...........++.+    .+.+.+                 ..+.+||+||
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G----~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG   94 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEA----KVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG   94 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEE----EEEECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceee----eeeeCCcchhhhhhhcccccccCcceEEEeccc
Confidence            457999999999999999999987322 222222222223322    233332                 4689999999


Q ss_pred             -------CCcchhhHHHHhhccCEEEEEEeCCC
Q 030848           78 -------QPGLRSIWEKYYEEAHAVVFVIDAAC  103 (170)
Q Consensus        78 -------~~~~~~~~~~~~~~~~~~i~v~d~~~  103 (170)
                             .+.+...+...++.+|++++|+|+.+
T Consensus        95 l~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           95 LTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             GCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                   33455556677799999999999864

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.05  E-value=1.2e-09  Score=79.76  Aligned_cols=120  Identities=18%  Similarity=0.269  Sum_probs=62.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCC---cccCCcceeEEEEEec----CeEEEEEEcCCCCc---------
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD---RIVPTVGLNIGRIEVS----NSKLVFWDLGGQPG---------   80 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~i~D~~G~~~---------   80 (170)
                      +++++++|++|+|||||+|.+.+......+...-   ....+.......+..+    ...+.++|++|--.         
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            4789999999999999999998754433221100   0011111111111111    23689999998211         


Q ss_pred             -chhh----HHHHh--------------hccCEEEEEEeCC-CcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030848           81 -LRSI----WEKYY--------------EEAHAVVFVIDAA-CPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA  140 (170)
Q Consensus        81 -~~~~----~~~~~--------------~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~  140 (170)
                       ....    +...+              .++++.++++|.. .+-.-.+ ...+..+..    . .+++++++|+|....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~----~-~~vI~Vi~K~D~lt~  155 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK----V-VNIIPVIAKADTMTL  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT----T-SEEEEEETTGGGSCH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh----c-CcEEEEEeccccCCH
Confidence             1111    11111              1258889999854 2222222 333333322    2 789999999998764


Q ss_pred             CC
Q 030848          141 VS  142 (170)
Q Consensus       141 ~~  142 (170)
                      ..
T Consensus       156 ~e  157 (270)
T 3sop_A          156 EE  157 (270)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.97  E-value=3.4e-10  Score=83.95  Aligned_cols=84  Identities=14%  Similarity=0.020  Sum_probs=61.4

Q ss_pred             CCcchhhHHHHhhccCEEEEEEeCCCcc-cHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC---HHHHHhHhCcc
Q 030848           78 QPGLRSIWEKYYEEAHAVVFVIDAACPS-RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLDLK  153 (170)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~---~~~~~~~~~~~  153 (170)
                      ++++......+++++|++++|+|++++. ++..+..|+..+..    .+.|+++|+||+|+.++..   .++..+.++  
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~--  139 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYR--  139 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHH--
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHH--
Confidence            5555555556889999999999999886 78777777765543    5789999999999975421   333444443  


Q ss_pred             ccccceeEEEeeeccCC
Q 030848          154 KLDERVCMFEAVSGYDG  170 (170)
Q Consensus       154 ~~~~~~~~~~~~Sa~~g  170 (170)
                         ....+++++||++|
T Consensus       140 ---~~g~~~~~~SA~~g  153 (302)
T 2yv5_A          140 ---DAGYDVLKVSAKTG  153 (302)
T ss_dssp             ---HTTCEEEECCTTTC
T ss_pred             ---HCCCeEEEEECCCC
Confidence               23458999999986

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.78  E-value=8.9e-08  Score=75.44  Aligned_cols=118  Identities=15%  Similarity=0.151  Sum_probs=64.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccC------CC--CCCCcc-------cCCcceeEEE-----------------E
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNV------EG--LPPDRI-------VPTVGLNIGR-----------------I   63 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~------~~--~~~~~~-------~~~~~~~~~~-----------------~   63 (170)
                      +...|+++|.+|+||||+++.+.......      ..  .+....       ....++.+..                 .
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            45579999999999999999996321111      00  000000       0000011111                 0


Q ss_pred             EecCeEEEEEEcCCCCcch----hhHHHH--hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcE-EEEeeCCC
Q 030848           64 EVSNSKLVFWDLGGQPGLR----SIWEKY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL-LILANKQD  136 (170)
Q Consensus        64 ~~~~~~~~i~D~~G~~~~~----~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i-i~v~nK~D  136 (170)
                      ...+..+.|+||||.....    ......  ...+|.+++|+|+........   ....+..     ..|+ .+++||+|
T Consensus       180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~-----~~~i~gvVlNK~D  251 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKD-----KVDVASVIVTKLD  251 (504)
T ss_dssp             HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHH-----HHCCCCEEEECTT
T ss_pred             HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHh-----hcCceEEEEeCCc
Confidence            1146789999999965321    111111  237899999999986543211   1222211     1454 89999999


Q ss_pred             ccccC
Q 030848          137 LPDAV  141 (170)
Q Consensus       137 ~~~~~  141 (170)
                      .....
T Consensus       252 ~~~~~  256 (504)
T 2j37_W          252 GHAKG  256 (504)
T ss_dssp             SCCCC
T ss_pred             cccch
Confidence            87543

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.66  E-value=1.9e-07  Score=71.92  Aligned_cols=144  Identities=17%  Similarity=0.211  Sum_probs=73.9

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecC-eEEEEEEcCCCC----cchhhHHH-Hh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQP----GLRSIWEK-YY   89 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~----~~~~~~~~-~~   89 (170)
                      ....++++|++|+|||||+|.+.+......+.-.....++... ........ ..+.+||++|-.    ........ .+
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~-~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L  146 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME-RHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF  146 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC-CEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee-EEeccccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence            3457999999999999999999885433222211111111111 11122111 358999999832    22222222 12


Q ss_pred             hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc---------ccCCHHHHHhHhCccc-----c
Q 030848           90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP---------DAVSADELARYLDLKK-----L  155 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~---------~~~~~~~~~~~~~~~~-----~  155 (170)
                      ...+..++ ++.....  ..-......+..    .+.|++++.||.|+.         +....+++.+.++...     .
T Consensus       147 ~~~~~~~~-lS~G~~~--kqrv~la~aL~~----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~  219 (413)
T 1tq4_A          147 YEYDFFII-ISATRFK--KNDIDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE  219 (413)
T ss_dssp             GGCSEEEE-EESSCCC--HHHHHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CccCCeEE-eCCCCcc--HHHHHHHHHHHh----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            34455554 6665211  111222223333    367999999999974         2345555555544221     0


Q ss_pred             c-cceeEEEeeec
Q 030848          156 D-ERVCMFEAVSG  167 (170)
Q Consensus       156 ~-~~~~~~~~~Sa  167 (170)
                      . .....++.+|+
T Consensus       220 ~g~~~~~iiliSs  232 (413)
T 1tq4_A          220 NGIAEPPIFLLSN  232 (413)
T ss_dssp             TTCSSCCEEECCT
T ss_pred             cCCCCCcEEEEec
Confidence            0 11235677787

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.57  E-value=7.9e-08  Score=70.52  Aligned_cols=58  Identities=28%  Similarity=0.384  Sum_probs=34.5

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCC
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ   78 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   78 (170)
                      ...++++++|.+|+|||||+|++.+......+..+   ..|....  .+.. +..+.+|||||-
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~---g~T~~~~--~~~~-~~~~~l~DtpG~  175 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRP---GITTSQQ--WVKV-GKELELLDTPGI  175 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC---------------C--CEEE-TTTEEEEECCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCCCC---CeeeeeE--EEEe-CCCEEEEECcCc
Confidence            45689999999999999999999863211111111   1111111  1222 457999999993

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.55  E-value=6.8e-08  Score=70.86  Aligned_cols=87  Identities=18%  Similarity=0.232  Sum_probs=55.5

Q ss_pred             EEEcCCCC-cchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHh
Q 030848           72 FWDLGGQP-GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYL  150 (170)
Q Consensus        72 i~D~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~  150 (170)
                      +-..||+. .........+..+|+++.|+|++++.+....  .+..++     .+.|.++++||+|+.+....+...+++
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~--~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~   75 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP--MIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF   75 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH--HHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH--HHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence            44578876 4455667778999999999999998765421  122222     478999999999997743333444444


Q ss_pred             CccccccceeEEEeeeccCC
Q 030848          151 DLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       151 ~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +     ....+++++||++|
T Consensus        76 ~-----~~g~~~i~iSA~~~   90 (282)
T 1puj_A           76 E-----NQGIRSLSINSVNG   90 (282)
T ss_dssp             H-----TTTCCEEECCTTTC
T ss_pred             H-----hcCCcEEEEECCCc
Confidence            3     23447889999875

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.51  E-value=1.9e-07  Score=75.42  Aligned_cols=24  Identities=29%  Similarity=0.495  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      ..++|+|++|||||||++.+.+..
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred             CeEEEECCCCChHHHHHHHHhCCC
Confidence            359999999999999999998753

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.48  E-value=3.9e-07  Score=73.05  Aligned_cols=64  Identities=25%  Similarity=0.297  Sum_probs=40.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEE---EecCeEEEEEEcCCC
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI---EVSNSKLVFWDLGGQ   78 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~   78 (170)
                      ..+..+|+|+|.+|+|||||+|++.+....+ .........|.+......   ...+..+.++||||-
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi  101 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGL  101 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCB
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCc
Confidence            5677899999999999999999998742211 111112223333321111   124578999999993

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.44  E-value=7.4e-08  Score=73.25  Aligned_cols=85  Identities=18%  Similarity=0.139  Sum_probs=55.7

Q ss_pred             CCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC-CHHHHHhHh----C
Q 030848           77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV-SADELARYL----D  151 (170)
Q Consensus        77 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~-~~~~~~~~~----~  151 (170)
                      .++.+...+..+.+.++++++|+|++++.     ..|...+....  .+.|+++|+||+|+.+.. ..++..+.+    +
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHH
Confidence            46778888888888999999999999752     22322332222  378999999999997643 333343332    2


Q ss_pred             ccccccceeEEEeeeccCC
Q 030848          152 LKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       152 ~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ..+.  ...+++++||++|
T Consensus       128 ~~g~--~~~~v~~iSA~~g  144 (368)
T 3h2y_A          128 QLGL--KPEDVFLISAAKG  144 (368)
T ss_dssp             HTTC--CCSEEEECCTTTC
T ss_pred             HcCC--CcccEEEEeCCCC
Confidence            1111  1237899999986

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.43  E-value=1.1e-07  Score=68.95  Aligned_cols=56  Identities=27%  Similarity=0.376  Sum_probs=33.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP   79 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   79 (170)
                      ++++++|.+|+|||||+|++.+......+..   ...|....  .+.. +..+.+|||||..
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~---~g~T~~~~--~~~~-~~~~~l~DtpG~~  155 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQ---PGITKGIQ--WFSL-ENGVKILDTPGIL  155 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-------------CCSC--EEEC-TTSCEEESSCEEC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCC---CCCccceE--EEEe-CCCEEEEECCCcc
Confidence            6999999999999999999986322111111   01111111  1222 3578999999943

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.40  E-value=2.3e-06  Score=66.28  Aligned_cols=116  Identities=16%  Similarity=0.149  Sum_probs=63.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCC--------CCCC-------cccCCcceeEEEE-----------------E
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEG--------LPPD-------RIVPTVGLNIGRI-----------------E   64 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~--------~~~~-------~~~~~~~~~~~~~-----------------~   64 (170)
                      ...|+++|.+|+||||++..+.........        ....       .+....++.....                 .
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~  179 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK  179 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence            567999999999999999998643221100        0000       0001111111110                 0


Q ss_pred             ecCeEEEEEEcCCCCcch----hhHHH--HhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848           65 VSNSKLVFWDLGGQPGLR----SIWEK--YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP  138 (170)
Q Consensus        65 ~~~~~~~i~D~~G~~~~~----~~~~~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~  138 (170)
                      ..+..+.|+||||.....    .....  ....+|.+++|+|+......   ......+...    -.+..+++||.|..
T Consensus       180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~----~~i~gVIlTKlD~~  252 (443)
T 3dm5_A          180 SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA----TPIGSIIVTKLDGS  252 (443)
T ss_dssp             HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS----CTTEEEEEECCSSC
T ss_pred             hCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh----CCCeEEEEECCCCc
Confidence            124689999999943321    11111  12357899999998754322   2222333322    23557999999975


Q ss_pred             c
Q 030848          139 D  139 (170)
Q Consensus       139 ~  139 (170)
                      .
T Consensus       253 ~  253 (443)
T 3dm5_A          253 A  253 (443)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.40  E-value=1.3e-07  Score=71.95  Aligned_cols=85  Identities=21%  Similarity=0.195  Sum_probs=55.5

Q ss_pred             CCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC-CHHHHHhH----hC
Q 030848           77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV-SADELARY----LD  151 (170)
Q Consensus        77 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~-~~~~~~~~----~~  151 (170)
                      .++.+++....+++.++++++|+|++++.+     .+...+....  .+.|+++|+||+|+.+.. ..++..+.    ++
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~  129 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAE  129 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHH
Confidence            478888888888899999999999998763     1111121112  367999999999997643 33333333    22


Q ss_pred             ccccccceeEEEeeeccCC
Q 030848          152 LKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       152 ~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ..+.  ...+++.+||++|
T Consensus       130 ~~g~--~~~~v~~iSA~~g  146 (369)
T 3ec1_A          130 ELGL--CPVDVCLVSAAKG  146 (369)
T ss_dssp             TTTC--CCSEEEECBTTTT
T ss_pred             HcCC--CcccEEEEECCCC
Confidence            1121  1237889999986

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.37  E-value=4.2e-07  Score=70.42  Aligned_cols=66  Identities=14%  Similarity=0.198  Sum_probs=40.1

Q ss_pred             cCeEEEEEEcCCCCcchhhH-H---HH--hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCC-c-EEEEeeCCCc
Q 030848           66 SNSKLVFWDLGGQPGLRSIW-E---KY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA-P-LLILANKQDL  137 (170)
Q Consensus        66 ~~~~~~i~D~~G~~~~~~~~-~---~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~-ii~v~nK~D~  137 (170)
                      .+..+.|+||||........ .   ..  +..+|.+++|+|+....   +.......+ .    ... | ..+++||+|.
T Consensus       179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~-~----~~~~~i~gvVlnK~D~  250 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAF-K----EAVGEIGSIIVTKLDG  250 (432)
T ss_dssp             SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHH-H----TTSCSCEEEEEECSSS
T ss_pred             hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHH-h----hcccCCeEEEEeCCCC
Confidence            45679999999965532211 1   11  12589999999986543   222222222 1    123 4 7899999998


Q ss_pred             cc
Q 030848          138 PD  139 (170)
Q Consensus       138 ~~  139 (170)
                      ..
T Consensus       251 ~~  252 (432)
T 2v3c_C          251 SA  252 (432)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.17  E-value=6e-06  Score=63.90  Aligned_cols=116  Identities=18%  Similarity=0.239  Sum_probs=62.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCC--------CCCc-------ccCCcceeEEE-----------------EE
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGL--------PPDR-------IVPTVGLNIGR-----------------IE   64 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~--------~~~~-------~~~~~~~~~~~-----------------~~   64 (170)
                      ...|+++|++|+||||++..+..........        +...       +....+.....                 ..
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~  176 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV  176 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence            4578999999999999999985322211000        0000       00011111110                 00


Q ss_pred             ecCeEEEEEEcCCCCc--c----hhhHHHH--hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 030848           65 VSNSKLVFWDLGGQPG--L----RSIWEKY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD  136 (170)
Q Consensus        65 ~~~~~~~i~D~~G~~~--~----~~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D  136 (170)
                      ..+..+.++||||...  .    .......  .-..+.+++|+|+............+...       -.+..+++||.|
T Consensus       177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD  249 (433)
T 3kl4_A          177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMD  249 (433)
T ss_dssp             TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGG
T ss_pred             hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEeccc
Confidence            1256789999999543  1    1111111  12468999999987653333333333222       134688999999


Q ss_pred             ccc
Q 030848          137 LPD  139 (170)
Q Consensus       137 ~~~  139 (170)
                      ...
T Consensus       250 ~~a  252 (433)
T 3kl4_A          250 GTA  252 (433)
T ss_dssp             GCS
T ss_pred             ccc
Confidence            753

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.09  E-value=1.5e-05  Score=58.88  Aligned_cols=66  Identities=20%  Similarity=0.216  Sum_probs=40.3

Q ss_pred             cCeEEEEEEcCCCCc--chh-hHH-----HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCC
Q 030848           66 SNSKLVFWDLGGQPG--LRS-IWE-----KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQD  136 (170)
Q Consensus        66 ~~~~~~i~D~~G~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii~v~nK~D  136 (170)
                      .+..+.++||||...  ... ...     .....+|.+++|+|+...   .+.......+..     ..+ ..+++||.|
T Consensus       179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~-----~~~i~gvVlnk~D  250 (297)
T 1j8m_F          179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ-----ASKIGTIIITKMD  250 (297)
T ss_dssp             TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH-----TCTTEEEEEECGG
T ss_pred             CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh-----hCCCCEEEEeCCC
Confidence            456799999999766  322 111     123568999999998643   222222233222     234 678999999


Q ss_pred             ccc
Q 030848          137 LPD  139 (170)
Q Consensus       137 ~~~  139 (170)
                      ...
T Consensus       251 ~~~  253 (297)
T 1j8m_F          251 GTA  253 (297)
T ss_dssp             GCT
T ss_pred             CCc
Confidence            753

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.01  E-value=2.5e-06  Score=61.86  Aligned_cols=81  Identities=16%  Similarity=0.148  Sum_probs=50.0

Q ss_pred             cCCCCc-chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcc
Q 030848           75 LGGQPG-LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLK  153 (170)
Q Consensus        75 ~~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~  153 (170)
                      .||+.. ........+.++|+++.|+|+++|.+.....      +...   +.|.++++||+|+.+....++..+.++  
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~------l~ll---~k~~iivlNK~DL~~~~~~~~~~~~~~--   72 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG------VDFS---RKETIILLNKVDIADEKTTKKWVEFFK--   72 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT------SCCT---TSEEEEEEECGGGSCHHHHHHHHHHHH--
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH------HHhc---CCCcEEEEECccCCCHHHHHHHHHHHH--
Confidence            477553 3345666779999999999999886653210      0111   789999999999987433334444443  


Q ss_pred             ccccceeEEEeeeccCC
Q 030848          154 KLDERVCMFEAVSGYDG  170 (170)
Q Consensus       154 ~~~~~~~~~~~~Sa~~g  170 (170)
                         ....++ .+||++|
T Consensus        73 ---~~g~~v-~iSa~~~   85 (262)
T 3cnl_A           73 ---KQGKRV-ITTHKGE   85 (262)
T ss_dssp             ---HTTCCE-EECCTTS
T ss_pred             ---HcCCeE-EEECCCC
Confidence               223346 8898875

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.94  E-value=6.3e-05  Score=58.46  Aligned_cols=27  Identities=22%  Similarity=0.273  Sum_probs=23.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      ..+-.-|.|+|++++|||+|+|.+.+.
T Consensus        64 ~~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence            445667899999999999999999864

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.90  E-value=7.5e-06  Score=60.64  Aligned_cols=74  Identities=16%  Similarity=0.042  Sum_probs=48.2

Q ss_pred             HhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC----HHHHHhHhCccccccceeEEE
Q 030848           88 YYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS----ADELARYLDLKKLDERVCMFE  163 (170)
Q Consensus        88 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~  163 (170)
                      .+.++|.+++|+|+.+|..-....+-+.....   ..+.|.++|+||+|+.++..    .+++.+.++     ....+++
T Consensus        83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~-----~~g~~v~  154 (307)
T 1t9h_A           83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYR-----NIGYDVY  154 (307)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHH-----HHTCCEE
T ss_pred             HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHH-----hCCCeEE
Confidence            46899999999999977654433222222222   25788999999999987533    344555554     2334677


Q ss_pred             eeeccC
Q 030848          164 AVSGYD  169 (170)
Q Consensus       164 ~~Sa~~  169 (170)
                      .+||++
T Consensus       155 ~~sa~~  160 (307)
T 1t9h_A          155 LTSSKD  160 (307)
T ss_dssp             ECCHHH
T ss_pred             EEecCC
Confidence            888764

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.87  E-value=9.5e-05  Score=57.32  Aligned_cols=67  Identities=13%  Similarity=0.156  Sum_probs=38.9

Q ss_pred             cCeEEEEEEcCCCCcch-hhHH-----HHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCc-EEEEeeCCCcc
Q 030848           66 SNSKLVFWDLGGQPGLR-SIWE-----KYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP-LLILANKQDLP  138 (170)
Q Consensus        66 ~~~~~~i~D~~G~~~~~-~~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-ii~v~nK~D~~  138 (170)
                      .+..+.|+||||..... ....     .....++.+++|+|+.....   .......+..     ..+ .-+++||.|..
T Consensus       182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~-----~l~i~gvVlnK~D~~  253 (433)
T 2xxa_A          182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNE-----ALPLTGVVLTKVDGD  253 (433)
T ss_dssp             TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHH-----HSCCCCEEEECTTSS
T ss_pred             CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhc-----cCCCeEEEEecCCCC
Confidence            35679999999965432 1111     12346889999999875432   2222222211     122 34689999975


Q ss_pred             cc
Q 030848          139 DA  140 (170)
Q Consensus       139 ~~  140 (170)
                      ..
T Consensus       254 ~~  255 (433)
T 2xxa_A          254 AR  255 (433)
T ss_dssp             SC
T ss_pred             cc
Confidence            43

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.84  E-value=7.1e-05  Score=55.37  Aligned_cols=26  Identities=38%  Similarity=0.594  Sum_probs=21.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYS   42 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~   42 (170)
                      .-.++++|++||||||+++.+.+...
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lagll~  127 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGRYYQ  127 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHH
Confidence            34789999999999999999976433

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.84  E-value=9.3e-05  Score=55.32  Aligned_cols=116  Identities=19%  Similarity=0.203  Sum_probs=61.4

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCC------CCCcc---------cCCcceeEEEE-----------------
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL------PPDRI---------VPTVGLNIGRI-----------------   63 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~------~~~~~---------~~~~~~~~~~~-----------------   63 (170)
                      +.-.++++|++|+||||+++.+.+......+.      .....         ....++.+..-                 
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~  207 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA  207 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence            44678999999999999999996643322211      00000         00111111000                 


Q ss_pred             EecCeEEEEEEcCCCCcc----hhhHHHH--hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCc
Q 030848           64 EVSNSKLVFWDLGGQPGL----RSIWEKY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL  137 (170)
Q Consensus        64 ~~~~~~~~i~D~~G~~~~----~~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~  137 (170)
                      ...+..+.++|++|....    .......  .-..|-.++++|+...   ++.......+....    ..-.+++||.|.
T Consensus       208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---~~~~~~~~~~~~~~----~it~iilTKlD~  280 (328)
T 3e70_C          208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---NAIVEQARQFNEAV----KIDGIILTKLDA  280 (328)
T ss_dssp             HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHHS----CCCEEEEECGGG
T ss_pred             HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---HHHHHHHHHHHHhc----CCCEEEEeCcCC
Confidence            002346778999995432    1222211  1246888999997654   23333333333211    123788899996


Q ss_pred             c
Q 030848          138 P  138 (170)
Q Consensus       138 ~  138 (170)
                      .
T Consensus       281 ~  281 (328)
T 3e70_C          281 D  281 (328)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.83  E-value=6.6e-05  Score=58.93  Aligned_cols=24  Identities=38%  Similarity=0.659  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .-.++++|++||||||+++.|.+.
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAgl  316 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLARQ  316 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHHH
Confidence            346899999999999999999654

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.79  E-value=8e-06  Score=63.97  Aligned_cols=95  Identities=21%  Similarity=0.273  Sum_probs=53.5

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE----EEEecCeEEEEEEcCCCC--cchhhH---
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQP--GLRSIW---   85 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~D~~G~~--~~~~~~---   85 (170)
                      .....|+++|.+||||||+.+++.......       ..++..+...    ..........+||..|.+  .....+   
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-------~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~  109 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-------GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALA  109 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-------TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-------CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHH
Confidence            456789999999999999999996521100       0011111000    000111334678888863  223332   


Q ss_pred             -----HHHhhccCEEEEEEeCCCcccHHHHHHHHHHH
Q 030848           86 -----EKYYEEAHAVVFVIDAACPSRFEDSKTALEKV  117 (170)
Q Consensus        86 -----~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~  117 (170)
                           ..++..+++.++|+|.++. +.+....|....
T Consensus       110 ~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~  145 (469)
T 1bif_A          110 ALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFG  145 (469)
T ss_dssp             HHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHH
Confidence                 4455567888999999987 344444444333

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.68  E-value=0.0009  Score=45.99  Aligned_cols=69  Identities=10%  Similarity=0.027  Sum_probs=47.4

Q ss_pred             CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCC-CCCCcEEEEeeCCCccc
Q 030848           67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNED-LQGAPLLILANKQDLPD  139 (170)
Q Consensus        67 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~ii~v~nK~D~~~  139 (170)
                      ...+.++|+|+...  ......+..+|.+++++..+...  ..+......+..... .++.++.+++|+.|...
T Consensus        75 ~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~  144 (206)
T 4dzz_A           75 DYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA  144 (206)
T ss_dssp             TSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred             CCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence            46799999998663  33445567899999999877554  555555555543321 24567899999999543

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.63  E-value=3.5e-05  Score=52.58  Aligned_cols=24  Identities=33%  Similarity=0.519  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      .+++++|++|+|||||++.+.+..
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999997754

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.52  E-value=5.3e-05  Score=51.54  Aligned_cols=23  Identities=17%  Similarity=0.368  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      .++++|++|||||||++.+.+..
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            58999999999999999998743

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.49  E-value=0.0025  Score=47.42  Aligned_cols=24  Identities=29%  Similarity=0.458  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .-.|+++|++|+||||++..+...
T Consensus       105 ~~vI~ivG~~G~GKTT~~~~LA~~  128 (320)
T 1zu4_A          105 LNIFMLVGVNGTGKTTSLAKMANY  128 (320)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            346889999999999999888543

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.48  E-value=0.00023  Score=54.97  Aligned_cols=115  Identities=18%  Similarity=0.242  Sum_probs=59.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCC------CCCc---------ccCCcceeEEEE--------------E---e
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGL------PPDR---------IVPTVGLNIGRI--------------E---V   65 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~------~~~~---------~~~~~~~~~~~~--------------~---~   65 (170)
                      -.++++|++|+||||++..+..........      ....         +....++.....              .   .
T Consensus        99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~~  178 (425)
T 2ffh_A           99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL  178 (425)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHHH
Confidence            457888999999999999885433221110      0000         000011111110              0   1


Q ss_pred             cCeEEEEEEcCCCCcchh-hHH---HH--hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           66 SNSKLVFWDLGGQPGLRS-IWE---KY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        66 ~~~~~~i~D~~G~~~~~~-~~~---~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      .+..+.|+||||...... ...   ..  .-.++.+++|+|+...   ++.......+....    ...-+++||.|...
T Consensus       179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av~~a~~f~~~l----~i~GVIlTKlD~~~  251 (425)
T 2ffh_A          179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDEKV----GVTGLVLTKLDGDA  251 (425)
T ss_dssp             TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHHT----CCCEEEEESGGGCS
T ss_pred             CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---HHHHHHHHHHHhcC----CceEEEEeCcCCcc
Confidence            345799999999644321 111   11  1257889999998643   22222223332111    12467889998643

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.48  E-value=6.9e-05  Score=53.51  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHH
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLK   38 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~   38 (170)
                      +...|+++|++||||||+++.+.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            45689999999999999999997

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.47  E-value=6.7e-05  Score=51.92  Aligned_cols=24  Identities=42%  Similarity=0.423  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      -.++++|++|+|||||++.+.+..
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            368999999999999999997754

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.46  E-value=8.5e-05  Score=51.59  Aligned_cols=26  Identities=35%  Similarity=0.393  Sum_probs=22.0

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .+...++++|+.|||||||++.+.+.
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            45567999999999999999999764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.43  E-value=9.1e-05  Score=55.96  Aligned_cols=24  Identities=25%  Similarity=0.336  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      -.++++|++|+|||||+|.|.+..
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred             CEEEEECCCCccHHHHHHHHhccc
Confidence            368999999999999999998743

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.41  E-value=8.8e-05  Score=51.15  Aligned_cols=24  Identities=29%  Similarity=0.302  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      -.++++|++||||||+++.+.+..
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            358999999999999999997753

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.39  E-value=0.00012  Score=50.99  Aligned_cols=27  Identities=26%  Similarity=0.286  Sum_probs=23.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      .+...++|+|++|||||||++.+.+..
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~   46 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAAL   46 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999997643

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.38  E-value=9.6e-05  Score=50.43  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      -.++++|++||||||+++.+.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            46899999999999999999763

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.38  E-value=0.00032  Score=51.74  Aligned_cols=25  Identities=24%  Similarity=0.408  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhccc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSN   43 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~   43 (170)
                      -.++++|++|+|||||+|.+. ....
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~~~  190 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GEEL  190 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHH-HhhC
Confidence            367999999999999999998 5443

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.37  E-value=0.00011  Score=51.17  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      -++++|++|||||||++.+.+..
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            57899999999999999998754

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.36  E-value=0.00025  Score=53.59  Aligned_cols=73  Identities=18%  Similarity=0.023  Sum_probs=42.6

Q ss_pred             hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC---HHHHHhHhCccccccceeEEEee
Q 030848           89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS---ADELARYLDLKKLDERVCMFEAV  165 (170)
Q Consensus        89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  165 (170)
                      ..++|.+++|... +|..-....+-+.....   ..+.|.++|+||+|+.++..   .++....+.     ....+++.+
T Consensus       128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~---~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~-----~~G~~v~~~  198 (358)
T 2rcn_A          128 AANIDQIVIVSAI-LPELSLNIIDRYLVGCE---TLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYR-----NIGYRVLMV  198 (358)
T ss_dssp             EECCCEEEEEEES-TTTCCHHHHHHHHHHHH---HHTCEEEEEEECGGGCCHHHHHHHHHHHHHHH-----TTTCCEEEC
T ss_pred             HhcCCEEEEEEeC-CCCCCHHHHHHHHHHHH---hcCCCEEEEEECccCCCchhHHHHHHHHHHHH-----hCCCcEEEE
Confidence            4788999988665 45433332222211111   13677899999999976533   222333333     344568889


Q ss_pred             eccCC
Q 030848          166 SGYDG  170 (170)
Q Consensus       166 Sa~~g  170 (170)
                      ||++|
T Consensus       199 Sa~~~  203 (358)
T 2rcn_A          199 SSHTQ  203 (358)
T ss_dssp             BTTTT
T ss_pred             ecCCC
Confidence            99875

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.36  E-value=4.9e-05  Score=56.29  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      -.++++|++|+|||||+|.+.+.
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-
T ss_pred             CEEEEECCCCCCHHHHHHHhccc
Confidence            47899999999999999999763

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.34  E-value=0.00012  Score=51.59  Aligned_cols=25  Identities=20%  Similarity=0.267  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYS   42 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~   42 (170)
                      --++++|++|||||||++.+.+..+
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCC
Confidence            4678999999999999999987544

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.32  E-value=0.00013  Score=51.29  Aligned_cols=24  Identities=33%  Similarity=0.584  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      -.++++|++|+|||||++.+.+..
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            458899999999999999998754

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.31  E-value=0.0001  Score=52.52  Aligned_cols=22  Identities=32%  Similarity=0.539  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .++++|+.|||||||++.+.+.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5789999999999999999774

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.27  E-value=0.00014  Score=48.98  Aligned_cols=19  Identities=32%  Similarity=0.534  Sum_probs=16.9

Q ss_pred             eEEEEEcCCCCChHHHHHH
Q 030848           18 FHVLILGIDKAGKTTLLEK   36 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~   36 (170)
                      --++++|++|||||||++.
T Consensus        10 ei~~l~G~nGsGKSTl~~~   28 (171)
T 4gp7_A           10 SLVVLIGSSGSGKSTFAKK   28 (171)
T ss_dssp             EEEEEECCTTSCHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHH
Confidence            3578999999999999994

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.27  E-value=0.00019  Score=51.31  Aligned_cols=24  Identities=25%  Similarity=0.462  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYS   42 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~   42 (170)
                      .++++|+.|+|||||++.+.+...
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~~   53 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFYQ   53 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            678999999999999999977543

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.27  E-value=0.00016  Score=50.05  Aligned_cols=27  Identities=15%  Similarity=0.292  Sum_probs=22.2

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYS   42 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~   42 (170)
                      +.--++++|++|+|||||+++|....+
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            334688999999999999999986543

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.27  E-value=0.00017  Score=48.42  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..|+++|++||||||+.+.+..
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999976

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.26  E-value=0.00019  Score=49.53  Aligned_cols=24  Identities=29%  Similarity=0.580  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +...|+++|++||||||+++.+.+
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            445789999999999999999965

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.25  E-value=0.0002  Score=49.18  Aligned_cols=23  Identities=43%  Similarity=0.654  Sum_probs=20.1

Q ss_pred             EEEEcCCCCChHHHHHHHHhhcc
Q 030848           20 VLILGIDKAGKTTLLEKLKSVYS   42 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~~~~   42 (170)
                      |+++||+||||+||++++....+
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~~   26 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            78999999999999999976433

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.24  E-value=0.0002  Score=50.09  Aligned_cols=25  Identities=24%  Similarity=0.399  Sum_probs=21.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ++.+.|+++|++||||||+.+.|..
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3557899999999999999999854

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.24  E-value=0.00018  Score=50.10  Aligned_cols=25  Identities=20%  Similarity=0.202  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      .--|+++|++||||||+++.+....
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhC
Confidence            3458899999999999999997743

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.24  E-value=0.0002  Score=49.87  Aligned_cols=22  Identities=27%  Similarity=0.572  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ++|+++|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999954

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.24  E-value=0.00018  Score=52.13  Aligned_cols=24  Identities=46%  Similarity=0.569  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYS   42 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~   42 (170)
                      .++++|+.|||||||++.+.+...
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~~   62 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYLS   62 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            578999999999999999977443

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.23  E-value=0.00022  Score=49.13  Aligned_cols=25  Identities=16%  Similarity=0.226  Sum_probs=21.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      ...++++|++||||||+++.+.+..
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3578999999999999999997643

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.23  E-value=0.00013  Score=51.52  Aligned_cols=22  Identities=41%  Similarity=0.514  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .++++|+.|+|||||++.+.+.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999774

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.22  E-value=0.00021  Score=49.77  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ++|+++|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999954

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.22  E-value=0.00029  Score=47.07  Aligned_cols=26  Identities=31%  Similarity=0.217  Sum_probs=22.3

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      +.-.++++|+.|+|||||++.+.+..
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            34468999999999999999998855

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.21  E-value=0.0002  Score=47.74  Aligned_cols=20  Identities=30%  Similarity=0.468  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCChHHHHHHH
Q 030848           18 FHVLILGIDKAGKTTLLEKL   37 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l   37 (170)
                      +.|+++|++||||||+.+.+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.21  E-value=0.0002  Score=49.61  Aligned_cols=24  Identities=29%  Similarity=0.436  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      ..|+++|++||||||+.+.+....
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999997643

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.21  E-value=0.00023  Score=47.50  Aligned_cols=21  Identities=29%  Similarity=0.325  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .|+++|++||||||+.+.+..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999965

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.20  E-value=0.00029  Score=47.38  Aligned_cols=24  Identities=13%  Similarity=0.414  Sum_probs=20.6

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +...|+++|++||||||+.+.+.+
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            345799999999999999999854

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.20  E-value=0.00017  Score=51.50  Aligned_cols=23  Identities=30%  Similarity=0.463  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      -.++++|+.|||||||++.+.+.
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            35789999999999999999774

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.17  E-value=0.00025  Score=48.91  Aligned_cols=22  Identities=18%  Similarity=0.252  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .+|+++|++||||||+.+.+..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999865

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.17  E-value=0.00017  Score=52.61  Aligned_cols=23  Identities=30%  Similarity=0.533  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      .++++|+.|||||||++.+.+..
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            57899999999999999997743

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.17  E-value=0.00024  Score=48.44  Aligned_cols=21  Identities=29%  Similarity=0.395  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .++++|++||||||+++.+..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999965

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.16  E-value=0.00024  Score=49.03  Aligned_cols=23  Identities=17%  Similarity=0.452  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ...|+++|++||||||+.+.|..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999965

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.16  E-value=0.0003  Score=47.30  Aligned_cols=22  Identities=23%  Similarity=0.351  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..|+++|++||||||+.+.+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3589999999999999999975

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.16  E-value=0.00018  Score=52.07  Aligned_cols=22  Identities=27%  Similarity=0.472  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .++++|+.|||||||++.+.+.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999774

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.16  E-value=0.00028  Score=49.40  Aligned_cols=22  Identities=32%  Similarity=0.288  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..|+++|++||||||+.+.+..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999854

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.15  E-value=0.0002  Score=51.33  Aligned_cols=23  Identities=30%  Similarity=0.505  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      .++++|+.|+|||||++.+.+..
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999997743

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.15  E-value=0.00018  Score=50.43  Aligned_cols=22  Identities=36%  Similarity=0.443  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .++++|+.|+|||||++.+.+.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999774

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.15  E-value=0.00018  Score=51.82  Aligned_cols=22  Identities=32%  Similarity=0.579  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .++++|+.|+|||||++.+.+.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999774

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.15  E-value=0.00035  Score=47.38  Aligned_cols=23  Identities=35%  Similarity=0.388  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ...|+++|++||||||+.+.+..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999853

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.14  E-value=0.00021  Score=50.59  Aligned_cols=22  Identities=32%  Similarity=0.380  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .++++|+.|+|||||++.+.+.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999774

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.13  E-value=0.00026  Score=50.40  Aligned_cols=23  Identities=30%  Similarity=0.405  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      .++++|+.|||||||++.+.+..
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999997743

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.12  E-value=0.00028  Score=51.04  Aligned_cols=26  Identities=19%  Similarity=0.241  Sum_probs=22.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      +.-.++++|++||||||+++.+.+..
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHhC
Confidence            44468999999999999999997643

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.11  E-value=0.00037  Score=47.43  Aligned_cols=24  Identities=29%  Similarity=0.517  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ...+|+++|++||||||+.+.+..
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            446899999999999999999865

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.11  E-value=0.00021  Score=50.95  Aligned_cols=22  Identities=36%  Similarity=0.557  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .++++|+.|+|||||++.+.+.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999774

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.11  E-value=0.00033  Score=47.60  Aligned_cols=23  Identities=22%  Similarity=0.228  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ...|+++|++||||||+.+.+..
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999865

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.11  E-value=0.012  Score=40.84  Aligned_cols=67  Identities=9%  Similarity=0.018  Sum_probs=45.2

Q ss_pred             CeEEEEEEcCCC-CcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           67 NSKLVFWDLGGQ-PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        67 ~~~~~i~D~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      ...+.++|+|+. ....  ....+..+|.+|+++..+ ..+...+...+..+....   +.++.+++|+.|...
T Consensus        67 ~yD~viiD~p~~~~~~~--~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~  134 (209)
T 3cwq_A           67 KYQNIVIDTQARPEDED--LEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---NNRFRILLTIIPPYP  134 (209)
T ss_dssp             GCSEEEEEEECCCSSSH--HHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred             cCCEEEEeCCCCcCcHH--HHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence            467999999987 4432  234567899999998765 334455555555554421   456889999998654

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.10  E-value=0.00033  Score=48.08  Aligned_cols=21  Identities=29%  Similarity=0.502  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .|+++|.+||||||+.+.+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999965

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.09  E-value=0.00036  Score=48.22  Aligned_cols=22  Identities=27%  Similarity=0.297  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +.|+++|++||||||+.+.+..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999965

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.09  E-value=0.00023  Score=51.36  Aligned_cols=22  Identities=32%  Similarity=0.434  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .++++|+.|+|||||++.+.+.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999774

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.09  E-value=0.00029  Score=49.16  Aligned_cols=23  Identities=30%  Similarity=0.147  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      -.++++|+.|+|||||++.+.+.
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            35789999999999999999886

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.09  E-value=0.00023  Score=51.55  Aligned_cols=22  Identities=32%  Similarity=0.539  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .++++|+.|+|||||++.+.+.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            5789999999999999999774

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.09  E-value=0.00029  Score=48.44  Aligned_cols=24  Identities=42%  Similarity=0.598  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYS   42 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~   42 (170)
                      +++++|++|+||||+++.+.+...
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhcc
Confidence            578999999999999999987544

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.09  E-value=0.00036  Score=48.65  Aligned_cols=22  Identities=32%  Similarity=0.434  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ++|+++|+|||||+|...+|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999854

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.08  E-value=0.00026  Score=51.49  Aligned_cols=23  Identities=26%  Similarity=0.521  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      .++++|+.|+|||||++.+.+..
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999997743

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.08  E-value=0.00044  Score=47.69  Aligned_cols=26  Identities=23%  Similarity=0.410  Sum_probs=22.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .+...|+++|++||||||+.+.+.+.
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45567999999999999999999663

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.08  E-value=0.00045  Score=46.71  Aligned_cols=26  Identities=19%  Similarity=0.123  Sum_probs=21.9

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      ..-.++++|++|+|||||++.+.+..
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            34568999999999999999997643

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.08  E-value=0.00066  Score=45.68  Aligned_cols=34  Identities=21%  Similarity=0.300  Sum_probs=25.1

Q ss_pred             HHHhhhccCceeEEEEEcCCCCChHHHHHHHHhh
Q 030848            7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus         7 ~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      ++.........-.+++.|++|+|||++++.+...
T Consensus        33 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           33 RTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             HHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence            3333434444566899999999999999999653

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.08  E-value=0.00043  Score=47.68  Aligned_cols=25  Identities=40%  Similarity=0.472  Sum_probs=21.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ...+.|+++|++||||||+.+.|..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4557899999999999999999854

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.07  E-value=0.00034  Score=51.69  Aligned_cols=26  Identities=19%  Similarity=0.284  Sum_probs=22.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      +.-.++++|++|+|||||++.|.+..
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            34578999999999999999997643

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.07  E-value=0.00042  Score=49.41  Aligned_cols=25  Identities=32%  Similarity=0.348  Sum_probs=22.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ++.++|+++|++||||||+.+.|..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3668999999999999999999954

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.07  E-value=0.00035  Score=47.01  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..|+++|++||||||+.+.+..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999965

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.06  E-value=0.00047  Score=46.86  Aligned_cols=25  Identities=28%  Similarity=0.474  Sum_probs=21.8

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ++...|+++|.+||||||+.+.+..
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            4567899999999999999999965

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.06  E-value=0.00037  Score=48.53  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ++|+++|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999854

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.06  E-value=0.00046  Score=46.96  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ...|+++|.+||||||+.+.+..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999964

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.05  E-value=0.00028  Score=51.51  Aligned_cols=23  Identities=39%  Similarity=0.583  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      .++++|+.|+|||||++.+.+..
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999997743

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.05  E-value=0.00036  Score=50.12  Aligned_cols=23  Identities=30%  Similarity=0.534  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      .++++|+.|+|||||++.+.+..
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999998743

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.05  E-value=0.00034  Score=50.53  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      .++++|+.|+|||||++.+.+..
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            57899999999999999997743

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.05  E-value=0.00034  Score=50.21  Aligned_cols=22  Identities=32%  Similarity=0.327  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .++++|+.|+|||||++.+.+.
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999884

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.05  E-value=0.00042  Score=47.07  Aligned_cols=22  Identities=36%  Similarity=0.496  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..|+++|++||||||+.+.+..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999965

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.05  E-value=0.00071  Score=50.17  Aligned_cols=27  Identities=22%  Similarity=0.301  Sum_probs=22.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      .+...++++|++|||||||++.|.+..
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            455679999999999999999997643

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.04  E-value=0.00043  Score=47.71  Aligned_cols=23  Identities=30%  Similarity=0.379  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ...|+++|++||||||+.+.+..
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            34799999999999999999964

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.04  E-value=0.00046  Score=49.19  Aligned_cols=25  Identities=28%  Similarity=0.417  Sum_probs=21.5

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      +...|+++|+.||||||+++.+.+.
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4467999999999999999999663

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.04  E-value=0.00045  Score=47.86  Aligned_cols=24  Identities=33%  Similarity=0.493  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +...|+++|.+||||||+.+.+..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999964

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.03  E-value=0.00048  Score=47.66  Aligned_cols=25  Identities=36%  Similarity=0.537  Sum_probs=21.5

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      ....|+++|++||||||+.+.+...
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3457899999999999999999763

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.03  E-value=0.00046  Score=46.94  Aligned_cols=23  Identities=30%  Similarity=0.390  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ...|+++|.+||||||+.+.+..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998854

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.03  E-value=0.0003  Score=50.60  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      .++++|+.|+|||||++.+.+..
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999997743

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.03  E-value=0.00031  Score=50.87  Aligned_cols=22  Identities=32%  Similarity=0.534  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .++++|+.|+|||||++.+.+.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5789999999999999999774

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.02  E-value=0.00041  Score=50.32  Aligned_cols=22  Identities=32%  Similarity=0.389  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .++++|+.|+|||||++.+.+.
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999874

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.02  E-value=0.00025  Score=50.03  Aligned_cols=23  Identities=26%  Similarity=0.290  Sum_probs=15.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHH-hh
Q 030848           18 FHVLILGIDKAGKTTLLEKLK-SV   40 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~-~~   40 (170)
                      -.++++|++||||||+++.+. +.
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            458999999999999999998 64

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.01  E-value=0.00047  Score=45.92  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ++|+++|.+||||||+.+.+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999854

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.01  E-value=0.00038  Score=51.33  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      -.++++|++|+|||||+|.+.+..
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CeEEEECCCCCcHHHHHHHhcccc
Confidence            367899999999999999997643

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.01  E-value=0.0007  Score=50.04  Aligned_cols=26  Identities=23%  Similarity=0.364  Sum_probs=22.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .....|+++|++|||||||++.+.+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            44567999999999999999999764

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.00  E-value=0.00073  Score=50.31  Aligned_cols=27  Identities=30%  Similarity=0.347  Sum_probs=22.6

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .+..+-|+++|++|||||||++.+...
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            345567999999999999999999654

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.00  E-value=0.00056  Score=47.20  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ...|++.|.+||||||+.+.+..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999999965

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.99  E-value=0.00048  Score=48.16  Aligned_cols=24  Identities=25%  Similarity=0.448  Sum_probs=20.9

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..++|+++|.+||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            447899999999999999999854

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.99  E-value=0.0005  Score=46.58  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ...|+++|++||||||+.+.+..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999999954

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.97  E-value=0.00057  Score=46.98  Aligned_cols=23  Identities=30%  Similarity=0.416  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ...|+++|++||||||+.+.+..
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~   26 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIME   26 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999999976

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.97  E-value=0.00053  Score=46.76  Aligned_cols=24  Identities=25%  Similarity=0.311  Sum_probs=20.7

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +...|+++|++||||||+.+.+..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999854

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.97  E-value=0.0082  Score=44.58  Aligned_cols=34  Identities=12%  Similarity=0.202  Sum_probs=26.4

Q ss_pred             HHHhhhccCceeEEEEEcCCCCChHHHHHHHHhh
Q 030848            7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus         7 ~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .+.........-.+++.|+||+|||++++.+...
T Consensus        35 ~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~   68 (318)
T 3te6_A           35 PIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDE   68 (318)
T ss_dssp             HHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3344444566778999999999999999999653

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.96  E-value=0.001  Score=45.93  Aligned_cols=25  Identities=32%  Similarity=0.458  Sum_probs=21.5

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .....|+++|++||||||+++.+.+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999865

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.95  E-value=0.00024  Score=52.56  Aligned_cols=24  Identities=33%  Similarity=0.493  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      -.++++|++|+|||||++.+.+..
T Consensus        81 e~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           81 QTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             CEEEEECCCCchHHHHHHHHHcCC
Confidence            368999999999999999997743

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.94  E-value=0.00069  Score=46.61  Aligned_cols=25  Identities=36%  Similarity=0.348  Sum_probs=21.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .....|+++|.+||||||+.+.+..
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999854

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.94  E-value=0.00054  Score=48.15  Aligned_cols=23  Identities=22%  Similarity=0.462  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ...|+++|++||||||+.+.|..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999853

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.94  E-value=0.00065  Score=46.58  Aligned_cols=25  Identities=32%  Similarity=0.319  Sum_probs=21.8

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .+...|+++|++||||||+.+.|..
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~   30 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRS   30 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999865

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.93  E-value=0.00048  Score=52.09  Aligned_cols=26  Identities=38%  Similarity=0.615  Sum_probs=22.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYS   42 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~   42 (170)
                      .-+++++|++|+|||||++.|.+...
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            45899999999999999999977533

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.93  E-value=0.00051  Score=48.04  Aligned_cols=21  Identities=29%  Similarity=0.283  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -++++|++|+|||||++.+.+
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999976

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.93  E-value=0.0006  Score=50.96  Aligned_cols=25  Identities=24%  Similarity=0.376  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYS   42 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~   42 (170)
                      -.++++|++|||||||++.+.+..+
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCc
Confidence            4789999999999999999987543

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.93  E-value=0.0025  Score=49.52  Aligned_cols=27  Identities=22%  Similarity=0.247  Sum_probs=22.4

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHh
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..++-.-|.|+|+.++|||+|+|.+..
T Consensus        63 ~~~~v~vvsv~G~~~~gks~l~N~ll~   89 (457)
T 4ido_A           63 RDKEVVAVSVAGAFRKGKSFLMDFMLR   89 (457)
T ss_dssp             TTSBEEEEEEEEBTTSSHHHHHHHHHH
T ss_pred             CCCceEEEEEECCCCCchhHHHHHHHH
Confidence            355667788999999999999997753

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.93  E-value=0.0005  Score=49.73  Aligned_cols=23  Identities=43%  Similarity=0.709  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      .++++|+.|+|||||++.+.+..
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998743

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.91  E-value=0.00061  Score=51.54  Aligned_cols=27  Identities=30%  Similarity=0.381  Sum_probs=22.5

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYS   42 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~   42 (170)
                      +.-.++++|++|||||||++.+.+..+
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            334789999999999999999987433

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.91  E-value=0.00064  Score=47.00  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ....|+++|.+||||||+.+.|..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999999964

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.91  E-value=0.0012  Score=48.50  Aligned_cols=26  Identities=15%  Similarity=0.253  Sum_probs=22.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..+...|+|+|++|||||||++.|..
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999998854

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.90  E-value=0.00029  Score=47.70  Aligned_cols=22  Identities=32%  Similarity=0.614  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .+.++|++|||||||++.+.+.
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999764

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.89  E-value=0.00062  Score=46.18  Aligned_cols=22  Identities=36%  Similarity=0.348  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..++++|++|+|||||++++..
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~   28 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIP   28 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            4588999999999999999976

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.89  E-value=0.00056  Score=46.01  Aligned_cols=21  Identities=29%  Similarity=0.553  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +|+++|++||||||+.+.+..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999999854

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.89  E-value=0.00068  Score=46.08  Aligned_cols=21  Identities=43%  Similarity=0.509  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .|+++|.+||||||+.+.+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999965

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.88  E-value=0.0008  Score=50.80  Aligned_cols=26  Identities=27%  Similarity=0.294  Sum_probs=21.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      +.-.++++|++||||||+++.+.+..
T Consensus       122 ~~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          122 PRGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            33489999999999999999997643

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.88  E-value=0.00084  Score=45.06  Aligned_cols=34  Identities=24%  Similarity=0.297  Sum_probs=25.1

Q ss_pred             HHHhhhccCceeEEEEEcCCCCChHHHHHHHHhh
Q 030848            7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus         7 ~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .+.........-.+++.|++|+|||+++..+...
T Consensus        33 ~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           33 RAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             HHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence            3333333444567899999999999999999663

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.88  E-value=0.00048  Score=52.13  Aligned_cols=23  Identities=26%  Similarity=0.343  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      .++++|++|||||||++.+.+..
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            47899999999999999997743

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.87  E-value=0.00069  Score=47.59  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +.|+++|++||||||+.+.+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999854

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.87  E-value=0.00049  Score=52.00  Aligned_cols=23  Identities=39%  Similarity=0.521  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      -++++|++|+|||||++.+.+..
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            46899999999999999997743

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.86  E-value=0.00061  Score=47.68  Aligned_cols=23  Identities=35%  Similarity=0.481  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ...|+++|++||||||+.+.+..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999854

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.85  E-value=0.00091  Score=45.35  Aligned_cols=22  Identities=27%  Similarity=0.283  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..|+++|.+||||||+.+.+..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999854

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.84  E-value=0.00064  Score=49.90  Aligned_cols=22  Identities=32%  Similarity=0.380  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .++++|+.|+|||||++.+.+.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5789999999999999999774

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.83  E-value=0.00085  Score=49.11  Aligned_cols=24  Identities=25%  Similarity=0.274  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ....|+++|++||||||+.+.+..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346789999999999999999965

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.82  E-value=0.00094  Score=46.53  Aligned_cols=23  Identities=22%  Similarity=0.325  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .+.|+++|.+||||||+.+.+..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999854

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.82  E-value=0.00089  Score=47.89  Aligned_cols=25  Identities=20%  Similarity=0.315  Sum_probs=21.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ...+.|+|.|++||||||+.+.|..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3557899999999999999998854

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.82  E-value=0.00095  Score=45.03  Aligned_cols=24  Identities=33%  Similarity=0.429  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +...|+++|.+||||||+.+.+..
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999999965

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.82  E-value=0.0007  Score=45.70  Aligned_cols=23  Identities=39%  Similarity=0.437  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ...|+++|++||||||+.+.+..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            35689999999999999999964

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.81  E-value=0.00062  Score=44.90  Aligned_cols=25  Identities=24%  Similarity=0.337  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      .-.++++|++|+|||+|++.+.+..
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            3468899999999999999997743

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.81  E-value=0.00077  Score=48.31  Aligned_cols=23  Identities=30%  Similarity=0.268  Sum_probs=20.7

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHH
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLK   38 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~   38 (170)
                      +...|+++|++||||||+.+.+.
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            44689999999999999999996

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.80  E-value=0.0006  Score=51.46  Aligned_cols=23  Identities=35%  Similarity=0.447  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      .++++|++|+|||||++.+.+..
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999997743

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.79  E-value=0.00061  Score=51.85  Aligned_cols=23  Identities=30%  Similarity=0.501  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      .++++|++|+|||||++.+.+..
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            47899999999999999997743

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.79  E-value=0.0017  Score=50.07  Aligned_cols=28  Identities=21%  Similarity=0.178  Sum_probs=22.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYS   42 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~   42 (170)
                      .+.-.++|+|++||||||+++.+.+...
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            3444689999999999999999977443

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.78  E-value=0.00064  Score=51.39  Aligned_cols=23  Identities=43%  Similarity=0.595  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      .++++|++|+|||||++.+.+..
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            47899999999999999997743

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.78  E-value=0.00063  Score=45.89  Aligned_cols=23  Identities=26%  Similarity=0.160  Sum_probs=16.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ...|+++|.+||||||+.+.+..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999964

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.77  E-value=0.001  Score=46.98  Aligned_cols=25  Identities=32%  Similarity=0.368  Sum_probs=21.6

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ....+|+++|.+||||||+.+.|..
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999854

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.76  E-value=0.00096  Score=45.57  Aligned_cols=22  Identities=36%  Similarity=0.383  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..|+++|++||||||+.+.+..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999854

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.76  E-value=0.001  Score=44.84  Aligned_cols=23  Identities=35%  Similarity=0.419  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ...+.++|++||||||++.++..
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34688999999999999999965

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.76  E-value=0.00068  Score=51.31  Aligned_cols=23  Identities=35%  Similarity=0.645  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      .++++|++|+|||||++.+.+..
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            47899999999999999997743

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.75  E-value=0.0012  Score=45.37  Aligned_cols=25  Identities=28%  Similarity=0.331  Sum_probs=21.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ...+.|+++|.+||||||+.+.+..
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            3568899999999999999998854

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.75  E-value=0.00087  Score=48.11  Aligned_cols=21  Identities=29%  Similarity=0.346  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .|+++|++||||||+.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999864

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.75  E-value=0.00089  Score=50.84  Aligned_cols=26  Identities=19%  Similarity=0.241  Sum_probs=22.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      +.-.++++|++||||||+++.+.+..
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            34469999999999999999997643

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.74  E-value=0.00071  Score=51.38  Aligned_cols=22  Identities=32%  Similarity=0.548  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .++++|++|+|||||++.+.+.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCcHHHHHHHHHHcC
Confidence            4789999999999999999774

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.73  E-value=0.00083  Score=45.47  Aligned_cols=21  Identities=24%  Similarity=0.553  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .|+++|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998854

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.73  E-value=0.00072  Score=51.35  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      .++++|++|+|||||++.+.+..
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            56899999999999999997753

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.73  E-value=0.00091  Score=48.61  Aligned_cols=20  Identities=35%  Similarity=0.478  Sum_probs=19.3

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 030848           20 VLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ++++|++|+|||||++.+.+
T Consensus        47 vlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            99999999999999999977

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.72  E-value=0.0012  Score=47.56  Aligned_cols=23  Identities=22%  Similarity=0.458  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ...|+++|.+||||||+.+.+..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999999865

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.71  E-value=0.0011  Score=52.38  Aligned_cols=24  Identities=29%  Similarity=0.509  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      ..++++|++||||||+++.+.+..
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            359999999999999999998743

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.71  E-value=0.0012  Score=44.06  Aligned_cols=22  Identities=27%  Similarity=0.554  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -.|+++|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999854

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.71  E-value=0.053  Score=40.66  Aligned_cols=22  Identities=36%  Similarity=0.460  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .+++.|++|+|||++++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999999763

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.70  E-value=0.00079  Score=48.23  Aligned_cols=24  Identities=29%  Similarity=0.351  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ....|+++|++||||||+.+.+..
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999865

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.70  E-value=0.0011  Score=44.35  Aligned_cols=21  Identities=24%  Similarity=0.411  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .|+++|.+||||||+.+.+..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999854

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.70  E-value=0.00098  Score=49.19  Aligned_cols=25  Identities=36%  Similarity=0.517  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      .-.++++|++||||||+++.+.+..
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3468899999999999999996643

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.70  E-value=0.033  Score=41.27  Aligned_cols=24  Identities=21%  Similarity=0.304  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +.-.+++.|++|+|||++++.+..
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~   67 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVAT   67 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCceEEEECCCCccHHHHHHHHHH
Confidence            335699999999999999999976

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.67  E-value=0.0011  Score=47.36  Aligned_cols=20  Identities=35%  Similarity=0.516  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 030848           20 VLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ++++|++|+||||+++.+.+
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~   71 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAG   71 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999977

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.66  E-value=0.0021  Score=44.94  Aligned_cols=24  Identities=21%  Similarity=0.274  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..-.+++.|++|+|||+++..+..
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999965

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.65  E-value=0.0011  Score=44.83  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      -.+++|+.|+||||++.+|...
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~   49 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFV   49 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            4689999999999999999653

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.64  E-value=0.00046  Score=47.82  Aligned_cols=21  Identities=52%  Similarity=0.732  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -|+++|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            488999999999999999965

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.63  E-value=0.00059  Score=51.39  Aligned_cols=23  Identities=39%  Similarity=0.468  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      .++++|++|+|||||++.+.+..
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            57899999999999999997743

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.59  E-value=0.0013  Score=46.64  Aligned_cols=24  Identities=21%  Similarity=0.263  Sum_probs=20.6

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..+.|.++|++||||||+.+.+..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999853

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.58  E-value=0.0013  Score=46.42  Aligned_cols=26  Identities=38%  Similarity=0.480  Sum_probs=22.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .+..-|+++|+.||||||+++.+.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            34567999999999999999999764

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.57  E-value=0.0016  Score=47.50  Aligned_cols=23  Identities=26%  Similarity=0.496  Sum_probs=20.5

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHH
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLK   38 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~   38 (170)
                      ....|+++|.+||||||+.+.|.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            35689999999999999999985

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.57  E-value=0.0012  Score=50.37  Aligned_cols=22  Identities=36%  Similarity=0.511  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .++++|++|+|||||++.+.+.
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5789999999999999999774

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.54  E-value=0.0018  Score=51.54  Aligned_cols=26  Identities=27%  Similarity=0.302  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhccc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSN   43 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~   43 (170)
                      =.++++|+.|+|||||++.+.+...+
T Consensus        48 e~~~LvG~NGaGKSTLlk~l~Gl~~p   73 (538)
T 1yqt_A           48 MVVGIVGPNGTGKSTAVKILAGQLIP   73 (538)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            36899999999999999999885443

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.52  E-value=0.0026  Score=43.75  Aligned_cols=21  Identities=33%  Similarity=0.385  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .+++.|++|+|||+++..+..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999999965

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.52  E-value=0.0015  Score=48.78  Aligned_cols=23  Identities=43%  Similarity=0.437  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      -.++++|++|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999999874

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.52  E-value=0.00057  Score=51.56  Aligned_cols=22  Identities=36%  Similarity=0.495  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .++++|++|+|||||++.+.+.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl   54 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGL   54 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5789999999999999999774

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.52  E-value=0.0019  Score=50.72  Aligned_cols=26  Identities=19%  Similarity=0.238  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhccc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSN   43 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~   43 (170)
                      -.++++|+.|+|||||++.+.+....
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~~p   55 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTALIP   55 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence            45789999999999999999775443

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.52  E-value=0.0016  Score=45.42  Aligned_cols=21  Identities=19%  Similarity=0.262  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -++++|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            578999999999999999964

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.51  E-value=0.0015  Score=47.28  Aligned_cols=20  Identities=35%  Similarity=0.516  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 030848           20 VLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ++++|++|+|||||++.+.+
T Consensus        76 vll~Gp~GtGKTtl~~~i~~   95 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAG   95 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHH
Confidence            89999999999999999977

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.51  E-value=0.0022  Score=44.52  Aligned_cols=25  Identities=24%  Similarity=0.502  Sum_probs=21.3

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .....|+++|.+||||||+.+.+..
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3446789999999999999999865

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.51  E-value=0.0017  Score=52.19  Aligned_cols=26  Identities=23%  Similarity=0.388  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhccc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSN   43 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~   43 (170)
                      -.++++|++|+|||||++.+.+...+
T Consensus       370 ~~~~ivG~sGsGKSTll~~l~g~~~p  395 (582)
T 3b5x_A          370 KTVALVGRSGSGKSTIANLFTRFYDV  395 (582)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            36899999999999999999775443

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.50  E-value=0.0015  Score=46.90  Aligned_cols=23  Identities=22%  Similarity=0.314  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .-.|+++|++|+||||+.+.+..
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999954

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.49  E-value=0.0014  Score=51.20  Aligned_cols=26  Identities=35%  Similarity=0.359  Sum_probs=22.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      ..-+++++|+.|||||||++.+.+..
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            44578999999999999999997643

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.48  E-value=0.0024  Score=44.87  Aligned_cols=21  Identities=38%  Similarity=0.461  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -|+++|+|||||+|....|..
T Consensus        31 iI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           31 VIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEEECCTTCCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999998854

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.46  E-value=0.0018  Score=51.54  Aligned_cols=26  Identities=31%  Similarity=0.312  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhccc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSN   43 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~   43 (170)
                      =.++++|+.|+|||||++.+.+...+
T Consensus        26 ei~gLiGpNGaGKSTLlkiL~Gl~~p   51 (538)
T 3ozx_A           26 TILGVLGKNGVGKTTVLKILAGEIIP   51 (538)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            35789999999999999999875443

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.46  E-value=0.0017  Score=49.04  Aligned_cols=25  Identities=36%  Similarity=0.517  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      .-.++++|++||||||+++.+.+..
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHhhc
Confidence            3468899999999999999996643

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.45  E-value=0.0024  Score=45.12  Aligned_cols=26  Identities=19%  Similarity=0.295  Sum_probs=22.2

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      ....|++.|++||||||+++.+....
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l   50 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRL   50 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            45679999999999999999997643

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.44  E-value=0.0021  Score=45.49  Aligned_cols=24  Identities=29%  Similarity=0.450  Sum_probs=20.3

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..+++.++|++||||||+...|..
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHH
Confidence            568999999999999999998844

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.43  E-value=0.0034  Score=45.41  Aligned_cols=25  Identities=24%  Similarity=0.352  Sum_probs=21.8

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ...-.+++.|++|+|||++++.+..
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~   73 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVAT   73 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHH
Confidence            3455699999999999999999976

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.43  E-value=0.0017  Score=42.74  Aligned_cols=20  Identities=35%  Similarity=0.639  Sum_probs=17.7

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 030848           20 VLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .+++|+.|+||||++.++.-
T Consensus        26 ~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            47999999999999999853

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.41  E-value=0.0015  Score=52.44  Aligned_cols=24  Identities=25%  Similarity=0.445  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      -.++++|++|+|||||++.+.+..
T Consensus       370 ~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          370 KTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhhcc
Confidence            368999999999999999997743

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.40  E-value=0.0022  Score=51.79  Aligned_cols=27  Identities=22%  Similarity=0.209  Sum_probs=22.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCC
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVE   45 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~   45 (170)
                      .++++|+.|+|||||++.+.+...+..
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll~P~~  131 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQKPNL  131 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCCCT
T ss_pred             EEEEECCCCChHHHHHHHHhcCCCCCC
Confidence            689999999999999999987544433

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.40  E-value=0.065  Score=41.53  Aligned_cols=32  Identities=25%  Similarity=0.331  Sum_probs=25.2

Q ss_pred             HHhhhccCceeEEEEEcCCCCChHHHHHHHHh
Q 030848            8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus         8 ~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +|...--++.--|++.||||+|||++++++.+
T Consensus       206 ~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~  237 (437)
T 4b4t_L          206 IFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA  237 (437)
T ss_dssp             HHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             HHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence            34443345556799999999999999999976

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.40  E-value=0.0019  Score=47.15  Aligned_cols=23  Identities=13%  Similarity=0.267  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      -++++|++|+|||||+..+.+..
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            47899999999999999996643

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.40  E-value=0.0021  Score=48.36  Aligned_cols=23  Identities=26%  Similarity=0.225  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      =+++++|+.|+|||||++.+.+.
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~   94 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNG   94 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999999999999874

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.40  E-value=0.002  Score=46.01  Aligned_cols=23  Identities=30%  Similarity=0.388  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ...++++|++|+|||++++.+.+
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            34699999999999999999976

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.40  E-value=0.0046  Score=44.53  Aligned_cols=26  Identities=31%  Similarity=0.399  Sum_probs=23.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ......+++.|++|+|||+++..+..
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~   86 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAE   86 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHH
Confidence            55667899999999999999999976

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.36  E-value=0.0025  Score=47.28  Aligned_cols=23  Identities=39%  Similarity=0.430  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      -.++++|+.|||||||++.+.+.
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cEEEEEecCCCCHHHHHHHHHhh
Confidence            35789999999999999999874

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.33  E-value=0.0022  Score=45.35  Aligned_cols=24  Identities=38%  Similarity=0.376  Sum_probs=18.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +..-|++.|++||||||+++.+..
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999965

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.32  E-value=0.0025  Score=44.15  Aligned_cols=21  Identities=29%  Similarity=0.213  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            579999999999999999976

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.32  E-value=0.0027  Score=51.32  Aligned_cols=26  Identities=31%  Similarity=0.314  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhccc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSN   43 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~   43 (170)
                      =.++++|+.|+|||||++.+.+...+
T Consensus       118 e~~~LiG~NGsGKSTLlkiL~Gll~p  143 (607)
T 3bk7_A          118 MVVGIVGPNGTGKTTAVKILAGQLIP  143 (607)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCChHHHHHHHHhCCCCC
Confidence            36899999999999999999875443

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.31  E-value=0.003  Score=44.60  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=20.9

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ....|+++|++||||||+.+.+..
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999998854

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.31  E-value=0.0028  Score=46.29  Aligned_cols=22  Identities=23%  Similarity=0.351  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..|+++|.+||||||+.+.+..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999865

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.29  E-value=0.0016  Score=47.67  Aligned_cols=24  Identities=17%  Similarity=0.245  Sum_probs=17.7

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +...|++.|++||||||+.+.|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            445799999999999999998854

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.29  E-value=0.003  Score=43.34  Aligned_cols=22  Identities=27%  Similarity=0.283  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..+++.|++|+|||+|+..+..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999999976

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.28  E-value=0.0017  Score=52.38  Aligned_cols=24  Identities=33%  Similarity=0.519  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      -.++++|++|+|||||++.+.+..
T Consensus       382 ~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          382 QKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Confidence            378999999999999999997743

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.26  E-value=0.0031  Score=43.27  Aligned_cols=21  Identities=24%  Similarity=0.384  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .|++.|++||||||+.+.+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999854

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.24  E-value=0.0031  Score=50.19  Aligned_cols=24  Identities=33%  Similarity=0.339  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYS   42 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~   42 (170)
                      .++++|+.|+|||||++.+.+...
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578999999999999999987543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.24  E-value=0.0034  Score=49.96  Aligned_cols=25  Identities=32%  Similarity=0.391  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhccc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSN   43 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~   43 (170)
                      .++++|+.|+|||||++.+.+....
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~~p  338 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVEEP  338 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5789999999999999999875443

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.23  E-value=0.0029  Score=49.14  Aligned_cols=24  Identities=17%  Similarity=0.181  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .=+++++|++|+|||||++.+.+.
T Consensus       157 Gq~~~IvG~sGsGKSTLl~~Iag~  180 (438)
T 2dpy_A          157 GQRMGLFAGSGVGKSVLLGMMARY  180 (438)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcc
Confidence            347899999999999999999873

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.22  E-value=0.0047  Score=45.31  Aligned_cols=25  Identities=28%  Similarity=0.331  Sum_probs=21.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ...-.+++.|++|+|||++++.+..
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~   71 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIAN   71 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHH
Confidence            3445699999999999999999976

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.22  E-value=0.0029  Score=44.48  Aligned_cols=21  Identities=24%  Similarity=0.301  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -++++|++|+|||||+..+..
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~   46 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAV   46 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            578999999999999999976

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.20  E-value=0.0029  Score=48.14  Aligned_cols=25  Identities=32%  Similarity=0.256  Sum_probs=21.4

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      +.-.++++|++|+|||||++.+.+.
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3447899999999999999999763

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.18  E-value=0.0014  Score=52.63  Aligned_cols=24  Identities=29%  Similarity=0.544  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      -.++++|++|+|||||++.+.+..
T Consensus       368 ~~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          368 ETVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhcCC
Confidence            368899999999999999997643

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.18  E-value=0.0035  Score=40.85  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=22.0

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .....|++.|++|+|||++...+..
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~   46 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQ   46 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHH
Confidence            4556799999999999999999976

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.17  E-value=0.0038  Score=50.45  Aligned_cols=25  Identities=32%  Similarity=0.391  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhccc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSN   43 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~   43 (170)
                      .++++|+.|+|||||++.+.+....
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~~p  408 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVEEP  408 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            5789999999999999999885443

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=96.17  E-value=0.23  Score=36.11  Aligned_cols=67  Identities=13%  Similarity=0.019  Sum_probs=42.9

Q ss_pred             eEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        68 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      ..+.|+|+|....... .....+.+|.+|+|+..+.. +...+......+...   ....+-+|+|+.|...
T Consensus       202 yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~~-~~~~~~~~~~~l~~~---g~~~~GvVlN~v~~~~  268 (286)
T 3la6_A          202 YDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAVN-TLKEVETSLSRFEQN---GIPVKGVILNSIFRRA  268 (286)
T ss_dssp             CSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTTS-BHHHHHHHHHHHHHT---TCCCCEEEEEEECCCC
T ss_pred             CCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCCC-cHHHHHHHHHHHHhC---CCCEEEEEEcCccccc
Confidence            3699999998544332 23345779999999987643 445555555555432   2334568889998643

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.16  E-value=0.0032  Score=43.85  Aligned_cols=22  Identities=14%  Similarity=0.181  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .+++.|++|+|||+++.++...
T Consensus        60 ~ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999998763

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.13  E-value=0.0035  Score=43.59  Aligned_cols=22  Identities=27%  Similarity=0.302  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .+++.|++|+|||+++..+...
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999653

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.10  E-value=0.0031  Score=47.70  Aligned_cols=20  Identities=30%  Similarity=0.529  Sum_probs=17.8

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 030848           20 VLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .+++|+.|+||||+++++..
T Consensus        26 ~~i~G~NGaGKTTll~ai~~   45 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAISF   45 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            45999999999999999963

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.09  E-value=0.0052  Score=44.94  Aligned_cols=26  Identities=27%  Similarity=0.365  Sum_probs=21.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .+....+++.|++|+|||+++..+..
T Consensus        64 ~~~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           64 ETPTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             SCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHH
Confidence            34556799999999999999988865

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.09  E-value=0.0077  Score=45.39  Aligned_cols=25  Identities=28%  Similarity=0.462  Sum_probs=20.8

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ....+|+++|++|+||||+...+..
T Consensus        22 g~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           22 NYRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHH
Confidence            3456799999999999999988743

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.08  E-value=0.0047  Score=43.53  Aligned_cols=25  Identities=32%  Similarity=0.381  Sum_probs=21.5

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ....-|++.|..||||||+++.+..
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3567799999999999999999854

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.08  E-value=0.002  Score=51.83  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      -.++++|++|+|||||++.+.+..
T Consensus       370 e~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          370 SLVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             CEEEEECSSSSSHHHHHHTTTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCc
Confidence            368999999999999999997643

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.07  E-value=0.0042  Score=45.45  Aligned_cols=24  Identities=21%  Similarity=0.101  Sum_probs=20.5

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ...-+++.|++|+|||++.+.+..
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345678889999999999999976

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.05  E-value=0.0037  Score=45.50  Aligned_cols=24  Identities=25%  Similarity=0.343  Sum_probs=21.4

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +.-.+++.|++|+|||++++.+..
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHH
Confidence            456799999999999999999976

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.03  E-value=0.0062  Score=47.61  Aligned_cols=31  Identities=23%  Similarity=0.340  Sum_probs=23.8

Q ss_pred             hhhccCceeEEEEEcCCCCChHHHHHHHHhh
Q 030848           10 KYIFTKTEFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        10 ~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      ....+...-+++++|++|+|||++++.+...
T Consensus       194 ~~l~r~~~~~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          194 EVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             HHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred             HHHhccCCCCeEEECCCCCCHHHHHHHHHHH
Confidence            3333344557899999999999999999653

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.03  E-value=0.017  Score=42.81  Aligned_cols=24  Identities=33%  Similarity=0.321  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ....+++.|++|+|||++++.+..
T Consensus        54 ~~~~vll~G~~GtGKT~la~~ia~   77 (338)
T 3pfi_A           54 CLDHILFSGPAGLGKTTLANIISY   77 (338)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHH
Confidence            445699999999999999999966

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.03  E-value=0.0051  Score=45.89  Aligned_cols=21  Identities=33%  Similarity=0.457  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .+++.|++|+||||+++.+.+
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            399999999999999999977

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.00  E-value=0.0052  Score=43.72  Aligned_cols=24  Identities=29%  Similarity=0.361  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ....+++.|++|+|||++++.+..
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            334689999999999999999976

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.99  E-value=0.0055  Score=44.80  Aligned_cols=24  Identities=33%  Similarity=0.349  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .-.++++|++|+|||++++.+...
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHH
Confidence            457999999999999999999663

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.98  E-value=0.0053  Score=49.57  Aligned_cols=28  Identities=32%  Similarity=0.520  Sum_probs=22.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCC
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEG   46 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~   46 (170)
                      .++++|+.|+|||||++.+.+......+
T Consensus       380 iv~iiG~NGsGKSTLlk~l~Gl~~p~~G  407 (608)
T 3j16_B          380 ILVMMGENGTGKTTLIKLLAGALKPDEG  407 (608)
T ss_dssp             EEEEESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence            3789999999999999999885544433

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.96  E-value=0.0045  Score=44.86  Aligned_cols=21  Identities=24%  Similarity=0.227  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -++++|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            578999999999999999865

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.95  E-value=0.0033  Score=55.11  Aligned_cols=26  Identities=23%  Similarity=0.455  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhccc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSN   43 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~   43 (170)
                      =++++||++|||||||++.+.+....
T Consensus      1106 e~vaIVG~SGsGKSTL~~lL~rl~~p 1131 (1321)
T 4f4c_A         1106 QTLALVGPSGCGKSTVVALLERFYDT 1131 (1321)
T ss_dssp             CEEEEECSTTSSTTSHHHHHTTSSCC
T ss_pred             CEEEEECCCCChHHHHHHHHhcCccC
Confidence            47899999999999999999774443

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.94  E-value=0.0032  Score=45.20  Aligned_cols=25  Identities=32%  Similarity=0.301  Sum_probs=21.4

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ++...|++.|..||||||+++.|..
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHH
Confidence            4557899999999999999999965

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.93  E-value=0.0078  Score=46.61  Aligned_cols=31  Identities=23%  Similarity=0.230  Sum_probs=24.3

Q ss_pred             HhhhccCceeEEEEEcCCCCChHHHHHHHHh
Q 030848            9 WKYIFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus         9 ~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      |...--+..--|++.||||+|||++++++.+
T Consensus       207 f~~~g~~~prGvLLyGPPGTGKTllAkAiA~  237 (434)
T 4b4t_M          207 FKDMGIRAPKGALMYGPPGTGKTLLARACAA  237 (434)
T ss_dssp             HHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             HHhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence            3333334556799999999999999999976

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.93  E-value=0.0045  Score=42.95  Aligned_cols=23  Identities=26%  Similarity=0.458  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .+.|+++|++||||||+.+.+..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998854

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.92  E-value=0.0048  Score=46.21  Aligned_cols=23  Identities=30%  Similarity=0.478  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      ..|+|+|++|||||||...|...
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHH
Confidence            36899999999999999999653

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.92  E-value=0.0053  Score=45.12  Aligned_cols=116  Identities=19%  Similarity=0.149  Sum_probs=60.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCC-----CCcccC-----------CcceeEEE-----------EEecCeE
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP-----PDRIVP-----------TVGLNIGR-----------IEVSNSK   69 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~-----~~~~~~-----------~~~~~~~~-----------~~~~~~~   69 (170)
                      .-.++++|++|+||||++..+........+..     .+.+.+           ..++....           ....+..
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d  184 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD  184 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence            34789999999999999999965433211100     000000           00110000           0124568


Q ss_pred             EEEEEcCCCCcchh-h---HHHHhh--ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           70 LVFWDLGGQPGLRS-I---WEKYYE--EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        70 ~~i~D~~G~~~~~~-~---~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      +.|+||+|...... .   ....+.  ..+.+++|+|++..  ...+..+...+. .   -+ ..-+++||.|...
T Consensus       185 lvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~-~---l~-~~giVltk~D~~~  253 (296)
T 2px0_A          185 HVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS-S---VP-VNQYIFTKIDETT  253 (296)
T ss_dssp             EEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS-S---SC-CCEEEEECTTTCS
T ss_pred             EEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh-c---CC-CCEEEEeCCCccc
Confidence            99999999554322 1   112222  35678889987632  233333322221 1   11 2345669999754

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.91  E-value=0.0054  Score=45.64  Aligned_cols=22  Identities=32%  Similarity=0.439  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..|+++|++||||||+...+..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999965

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.90  E-value=0.0048  Score=45.59  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -.+++.|++|+|||++++.+..
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4689999999999999999976

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.90  E-value=0.005  Score=42.63  Aligned_cols=23  Identities=30%  Similarity=0.317  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ...|+++|++|+|||++...+..
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~   56 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQ   56 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999965

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.88  E-value=0.0057  Score=47.09  Aligned_cols=24  Identities=25%  Similarity=0.349  Sum_probs=20.6

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ...-|+++|.+||||||+.+++..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345688999999999999999965

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.85  E-value=0.0046  Score=42.78  Aligned_cols=20  Identities=35%  Similarity=0.639  Sum_probs=17.6

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 030848           20 VLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .+++|+.|+||||++.+|.-
T Consensus        26 ~~I~G~NgsGKStil~ai~~   45 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAILV   45 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            47899999999999999943

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.83  E-value=0.0054  Score=41.75  Aligned_cols=20  Identities=30%  Similarity=0.468  Sum_probs=18.5

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 030848           20 VLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ++|+|.++||||+|...+..
T Consensus         2 ilV~Gg~~SGKS~~A~~la~   21 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIG   21 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHC
T ss_pred             EEEECCCCCcHHHHHHHHHh
Confidence            68999999999999999975

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.83  E-value=0.0083  Score=44.68  Aligned_cols=22  Identities=32%  Similarity=0.457  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .+++.|++|+||||+++.+.+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999763

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.82  E-value=0.0091  Score=44.35  Aligned_cols=22  Identities=32%  Similarity=0.453  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .+++.|++|+|||++++.+...
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999999663

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=95.80  E-value=0.042  Score=41.69  Aligned_cols=24  Identities=25%  Similarity=0.360  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ....+++.|++|+|||+++..+..
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~  170 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAA  170 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999976

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.79  E-value=0.0055  Score=45.90  Aligned_cols=25  Identities=24%  Similarity=0.405  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      ..-.+++.|++|+|||++++.+...
T Consensus        44 ~~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3457899999999999999999763

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.78  E-value=0.0097  Score=45.99  Aligned_cols=25  Identities=28%  Similarity=0.389  Sum_probs=21.6

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .+.--+++.||||+|||++++++.+
T Consensus       204 ~~prGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          204 DPPRGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3444599999999999999999976

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.75  E-value=0.0079  Score=45.00  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      ..|+|+|++|||||+|...|...
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999653

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.72  E-value=0.0045  Score=49.40  Aligned_cols=26  Identities=35%  Similarity=0.533  Sum_probs=22.3

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      +...++++|++||||||+.+.|.+..
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L  393 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARL  393 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhh
Confidence            45679999999999999999997643

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.71  E-value=0.0065  Score=44.25  Aligned_cols=24  Identities=29%  Similarity=0.499  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ....+++.|++|+|||++++.+..
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999976

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.70  E-value=0.0083  Score=42.41  Aligned_cols=23  Identities=26%  Similarity=0.276  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      ..|++.|..||||||+++.+...
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            46899999999999999999653

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.70  E-value=0.0033  Score=40.85  Aligned_cols=25  Identities=16%  Similarity=0.117  Sum_probs=21.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .....|++.|++|+|||++...+..
T Consensus        25 ~~~~~vll~G~~GtGKt~lA~~i~~   49 (143)
T 3co5_A           25 KRTSPVFLTGEAGSPFETVARYFHK   49 (143)
T ss_dssp             TCSSCEEEEEETTCCHHHHHGGGCC
T ss_pred             CCCCcEEEECCCCccHHHHHHHHHH
Confidence            3456799999999999999999854

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.70  E-value=0.0087  Score=44.18  Aligned_cols=23  Identities=35%  Similarity=0.668  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      -.++++|++|+||||++..+...
T Consensus       105 ~vi~ivG~~GsGKTTl~~~LA~~  127 (306)
T 1vma_A          105 FVIMVVGVNGTGKTTSCGKLAKM  127 (306)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHHH
Confidence            46889999999999999999654

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.69  E-value=0.0085  Score=44.43  Aligned_cols=22  Identities=32%  Similarity=0.243  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .-|+|+|++|||||+|...+..
T Consensus         4 ~~i~i~GptgsGKt~la~~La~   25 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAK   25 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCcCCHHHHHHHHHH
Confidence            3578999999999999999965

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.69  E-value=0.0069  Score=42.60  Aligned_cols=20  Identities=30%  Similarity=0.363  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCChHHHHHHHH
Q 030848           19 HVLILGIDKAGKTTLLEKLK   38 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~   38 (170)
                      -++++|++|+|||+|+..+.
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999977774

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.64  E-value=0.007  Score=45.49  Aligned_cols=22  Identities=27%  Similarity=0.294  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      -+.++|++|+|||||+..+...
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999764

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.62  E-value=0.01  Score=45.49  Aligned_cols=32  Identities=22%  Similarity=0.263  Sum_probs=24.8

Q ss_pred             HHhhhccCceeEEEEEcCCCCChHHHHHHHHh
Q 030848            8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus         8 ~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +|...--++.--+++.||||+|||.+.+++.+
T Consensus       173 ~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~  204 (405)
T 4b4t_J          173 LFESLGIAQPKGVILYGPPGTGKTLLARAVAH  204 (405)
T ss_dssp             HHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred             HHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH
Confidence            34443344555699999999999999999976

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.60  E-value=0.0049  Score=44.17  Aligned_cols=23  Identities=30%  Similarity=0.358  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      ..+++.|++|+|||++++.+...
T Consensus        45 ~~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            34899999999999999999763

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.58  E-value=0.015  Score=43.75  Aligned_cols=23  Identities=30%  Similarity=0.479  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .-.+++.|++|+|||++++.+..
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~   67 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFN   67 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHH
Confidence            44799999999999999999965

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.56  E-value=0.0098  Score=44.01  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +...+++.|++|+|||+++..+..
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHH
Confidence            345799999999999999999976

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=95.54  E-value=0.3  Score=34.02  Aligned_cols=80  Identities=13%  Similarity=0.170  Sum_probs=55.5

Q ss_pred             eEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHH
Q 030848           68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELA  147 (170)
Q Consensus        68 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~  147 (170)
                      ..+.|+|+|+....  .....+..+|.+++++..+ ..+...+......+.. ...+...+-+++|+.|.......+++.
T Consensus       119 yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~-~~~~~~~~~~v~N~~~~~~~~~~~~~~  194 (245)
T 3ea0_A          119 YDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKE-FEKPISRIEIILNRADTNSRITSDEIE  194 (245)
T ss_dssp             CSEEEEEEESSCCT--THHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHT-CSSCCSCEEEEEESTTSCTTSCHHHHH
T ss_pred             CCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHH-hCCCccceEEEEecCCCCCCCCHHHHH
Confidence            57999999986533  3344568899999999765 4455666666555543 333456688999999977666677777


Q ss_pred             hHhC
Q 030848          148 RYLD  151 (170)
Q Consensus       148 ~~~~  151 (170)
                      +.+.
T Consensus       195 ~~~~  198 (245)
T 3ea0_A          195 KVIG  198 (245)
T ss_dssp             HHHT
T ss_pred             HHhC
Confidence            7665

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=95.51  E-value=0.0025  Score=45.04  Aligned_cols=23  Identities=22%  Similarity=0.291  Sum_probs=19.5

Q ss_pred             EEEEcCCCCChHHHHHHHHhhcc
Q 030848           20 VLILGIDKAGKTTLLEKLKSVYS   42 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~~~~   42 (170)
                      ++++|++|+|||||++.+.+...
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~~   52 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTALI   52 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcccc
Confidence            36899999999999999977544

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.51  E-value=0.012  Score=43.57  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .-|+|+|++|||||+|...+..
T Consensus        11 ~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCccCHHHHHHHHHH
Confidence            4578999999999999999965

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	170
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	7e-24
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	2e-22
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	6e-22
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	4e-21
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-18
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-18
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	7e-16
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	9e-16
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	1e-15
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	5e-15
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	8e-15
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-14
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	1e-14
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	3e-14
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	5e-14
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	4e-13
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	6e-13
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	9e-13
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	2e-11
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	5e-11
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	7e-11
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	8e-11
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	2e-10
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	3e-10
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	2e-09
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	2e-09
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-09
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	2e-09
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	8e-09
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	2e-08
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	2e-08
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	6e-08
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	9e-08
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	1e-07
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	2e-07
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	6e-07
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-06
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-06
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	3e-06
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	4e-06
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	1e-05
d1puja_	273	c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti	1e-05
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	4e-05
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	9e-05
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	1e-04
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	2e-04
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	2e-04
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	2e-04
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	5e-04
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	8e-04
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	0.001
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	0.001
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	0.002

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 90.0 bits (222), Expect = 7e-24
 Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 7/163 (4%)

Query: 8   LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN 67
           +   IF   E  +L+LG+D AGKTT+L KLK   S          +PTVG N+  +   N
Sbjct: 3   VLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQS-------VTTIPTVGFNVETVTYKN 55

Query: 68  SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAP 127
            K   WD+GGQ  +R +W  YY     ++FV+D A   R ++++  L +++ + +++ A 
Sbjct: 56  VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI 115

Query: 128 LLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           +LI ANKQDLPDA+   E+   L L ++ +R    +      G
Sbjct: 116 ILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSG 158

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 86.2 bits (212), Expect = 2e-22
 Identities = 62/169 (36%), Positives = 94/169 (55%), Gaps = 8/169 (4%)

Query: 3   SLFYGLWKYIF-TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG 61
           ++F  ++  ++ +  E  +LILG+D AGKTT+L +L+               PT+G N+ 
Sbjct: 2   NIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEV-------VTTKPTIGFNVE 54

Query: 62  RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNE 121
            +   N KL  WDLGGQ  +R  W  YY +  AV+FV+D+    R   +   L  +L+ E
Sbjct: 55  TLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEE 114

Query: 122 DLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           +LQ A LL+ ANKQD P A+SA E+++ L+L +L +R     A S   G
Sbjct: 115 ELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKG 163

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 85.1 bits (209), Expect = 6e-22
 Identities = 56/167 (33%), Positives = 91/167 (54%), Gaps = 8/167 (4%)

Query: 4   LFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI 63
           LF  +W+ +F   E  V+I+G+D AGKTT+L +                 PT+G N+  I
Sbjct: 3   LFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFS-------MNEVVHTSPTIGSNVEEI 54

Query: 64  EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL 123
            ++N++ + WD+GGQ  LRS W  YY     V+ V+D+    R   ++  L K+L +EDL
Sbjct: 55  VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL 114

Query: 124 QGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           + A LLI ANKQD+ + ++  E++++L L  + +     +A     G
Sbjct: 115 RKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTG 161

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.7 bits (206), Expect = 4e-21
 Identities = 27/136 (19%), Positives = 63/136 (46%), Gaps = 20/136 (14%)

Query: 15  KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
           +    +L+LG  ++GK+T++++++             +V T G+   + +V       +D
Sbjct: 4   RATHRLLLLGAGESGKSTIVKQMRI----------LHVVLTSGIFETKFQVDKVNFHMFD 53

Query: 75  LGGQPGLRSIWEKYYEEAHAVVFVIDAACP----------SRFEDSKTALEKVLRNEDLQ 124
           +GGQ   R  W + + +  A++FV+ ++            +R +++    + +  N  L+
Sbjct: 54  VGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 113

Query: 125 GAPLLILANKQDLPDA 140
              +++  NKQDL   
Sbjct: 114 TISVILFLNKQDLLAE 129

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 76.1 bits (186), Expect = 1e-18
 Identities = 60/157 (38%), Positives = 85/157 (54%), Gaps = 7/157 (4%)

Query: 14  TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFW 73
              E  +L+LG+D AGKTTLL++L              I PT G NI  ++    KL  W
Sbjct: 13  PDQEVRILLLGLDNAGKTTLLKQLA-------SEDISHITPTQGFNIKSVQSQGFKLNVW 65

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D+GGQ  +R  W  Y+E    +++VID+A   RFE++   L ++L  E L   P+LI AN
Sbjct: 66  DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 125

Query: 134 KQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           KQDL  A  A E+A  L+L  + +RV   ++ S   G
Sbjct: 126 KQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTG 162

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 75.5 bits (184), Expect = 2e-18
 Identities = 61/154 (39%), Positives = 85/154 (55%), Gaps = 7/154 (4%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  +L+LG+D AGKTT+L+K         G   D I PT+G NI  +E    KL  WD+G
Sbjct: 2   ELRLLMLGLDNAGKTTILKKFN-------GEDVDTISPTLGFNIKTLEHRGFKLNIWDVG 54

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
           GQ  LRS W  Y+E    +++V+D+A   R +D +  L+ +L  E L GA LLI ANKQD
Sbjct: 55  GQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQD 114

Query: 137 LPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           LP A+S + +   L+L  +       +  S   G
Sbjct: 115 LPGALSCNAIQEALELDSIRSHHWRIQGCSAVTG 148

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.5 bits (169), Expect = 7e-16
 Identities = 27/144 (18%), Positives = 61/144 (42%), Gaps = 20/144 (13%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
              +L+LG  ++GK+T L++++ ++            PT G++    E+ N      D+G
Sbjct: 2   LVKILLLGAGESGKSTFLKQMRIIHG---------QDPTKGIHEYDFEIKNVPFKMVDVG 52

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRF----------EDSKTALEKVLRNEDLQGA 126
           GQ   R  W + ++   +++F++ ++   +            +S    E ++ N      
Sbjct: 53  GQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNV 112

Query: 127 PLLILANKQ-DLPDAVSADELARY 149
            +++  NK   L + V    +  Y
Sbjct: 113 SIILFLNKTDLLEEKVQVVSIKDY 136

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 68.5 bits (166), Expect = 9e-16
 Identities = 52/152 (34%), Positives = 84/152 (55%), Gaps = 7/152 (4%)

Query: 19  HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78
            +L++G+D AGKTT+L KLK              +PT+G N+  +E  N     WD+GGQ
Sbjct: 2   RILMVGLDAAGKTTILYKLK-------LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 54

Query: 79  PGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP 138
             +R +W  Y++    ++FV+D+    R  +++  L ++L  ++L+ A LL+ ANKQDLP
Sbjct: 55  DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114

Query: 139 DAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           +A++A E+   L L  L  R    +A     G
Sbjct: 115 NAMNAAEITDKLGLHSLRHRNWYIQATCATSG 146

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.3 bits (168), Expect = 1e-15
 Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 14/158 (8%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
           VL +G+  +GKT L  +L +               ++  +    +V+N++     L   P
Sbjct: 3   VLFVGLCDSGKTLLFVRLLTGQ-------YRDTQTSITDSSAIYKVNNNRGNSLTLIDLP 55

Query: 80  GLRSI----WEKYYEEAHAVVFVIDAACPSRF-EDSKTALEKVLRNEDLQGA--PLLILA 132
           G  S+     +++   A AVVFV+D+A   R  +D    L +VL +         LLI  
Sbjct: 56  GHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIAC 115

Query: 133 NKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           NKQD+  A SA  + + L+ +    RV    A S  D 
Sbjct: 116 NKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS 153

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.2 bits (163), Expect = 5e-15
 Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 11/126 (8%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS----NSKLVFW 73
           F +L++G    GK+ LL +        +    +  + T+G++     V       KL  W
Sbjct: 7   FKLLLIGNSGVGKSCLLLRF------SDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 60

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY  +H ++ V D      F   K  L+++ R         L++ N
Sbjct: 61  DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT-STVLKLLVGN 119

Query: 134 KQDLPD 139
           K DL D
Sbjct: 120 KCDLKD 125

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 66.2 bits (160), Expect = 8e-15
 Identities = 52/154 (33%), Positives = 85/154 (55%), Gaps = 6/154 (3%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  + ++G+  +GKTT +  +        G   + ++PTVG N+ +I   N  +  WD+G
Sbjct: 2   EMELTLVGLQYSGKTTFVNVI------ASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIG 55

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
           GQP  RS+WE+Y     A+V+++DAA   + E SK  L  +L    LQG P+L+L NK+D
Sbjct: 56  GQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 115

Query: 137 LPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           LP A+   EL   ++L  + +R     ++S  + 
Sbjct: 116 LPGALDEKELIEKMNLSAIQDREICCYSISCKEK 149

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.6 bits (159), Expect = 1e-14
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 10/96 (10%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS----NSKLVFW 73
             +L++G    GK+ LL +       VE       + T+G++     V       KL  W
Sbjct: 3   MKILLIGDSGVGKSCLLVRF------VEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIW 56

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
           D  GQ   R+I   YY  A  ++ V D      F +
Sbjct: 57  DTAGQERFRTITTAYYRGAMGIILVYDITDERTFTN 92

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.1 bits (160), Expect = 1e-14
 Identities = 28/145 (19%), Positives = 63/145 (43%), Gaps = 19/145 (13%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  +L+LG  ++GK+T +++++ ++ +         VPT G+     ++ +      D+G
Sbjct: 2   ELKLLLLGTGESGKSTFIKQMRIIHGS--------GVPTTGIIEYPFDLQSVIFRMVDVG 53

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSR----------FEDSKTALEKVLRNEDLQGA 126
           GQ   R  W   +E   +++F++  +   +           E+SK     ++     Q +
Sbjct: 54  GQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS 113

Query: 127 PLLILAN-KQDLPDAVSADELARYL 150
            +++  N K  L + +    L  Y 
Sbjct: 114 SVILFLNKKDLLEEKIMYSHLVDYF 138

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.4 bits (156), Expect = 3e-14
 Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 10/136 (7%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS----NSKLVFW 73
           F +L++G    GKT +L +        E       + T+G++     +       KL  W
Sbjct: 7   FKLLLIGDSGVGKTCVLFRF------SEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 60

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   R+I   YY  A  ++ V D      F++ +  +  +  +       +++   
Sbjct: 61  DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 120

Query: 134 KQDLPDAVSADELARY 149
                    + E    
Sbjct: 121 CDVNDKRQVSKERGEK 136

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 64.3 bits (155), Expect = 5e-14
 Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 12/153 (7%)

Query: 5   FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE 64
           F GL+K         ++ LG+D AGKTTLL  LK            + VPT+      + 
Sbjct: 6   FLGLYKK-----TGKLVFLGLDNAGKTTLLHMLKDDR-------LGQHVPTLHPTSEELT 53

Query: 65  VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQ 124
           ++      +DLGG    R +W+ Y    + +VF++D A   R  +SK  L+ ++ +E + 
Sbjct: 54  IAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIA 113

Query: 125 GAPLLILANKQDLPDAVSADELARYLDLKKLDE 157
             P+LIL NK D P+A+S + L     L     
Sbjct: 114 NVPILILGNKIDRPEAISEERLREMFGLYGQTT 146

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.9 bits (149), Expect = 4e-13
 Identities = 24/144 (16%), Positives = 54/144 (37%), Gaps = 22/144 (15%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  +L+LG  ++GK+T+++++K ++               G+        +     +D+G
Sbjct: 2   EVKLLLLGAGESGKSTIVKQMKIIH-----------EAGTGIVETHFTFKDLHFKMFDVG 50

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDA----------ACPSRFEDSKTALEKVLRNEDLQGA 126
           GQ   R  W   +E   A++F +               +R  +S    + +  N+     
Sbjct: 51  GQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDT 110

Query: 127 PLLILAN-KQDLPDAVSADELARY 149
            +++  N K    + +    L   
Sbjct: 111 SIILFLNKKDLFEEKIKKSPLTIC 134

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.2 bits (147), Expect = 6e-13
 Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 14/158 (8%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79
           +L LG+D AGKTTLL  LK+            + PT       + + N K   +DLGG  
Sbjct: 3   LLFLGLDNAGKTTLLHMLKNDR-------LATLQPTWHPTSEELAIGNIKFTTFDLGGHI 55

Query: 80  GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139
             R +W+ Y+ E + +VF++DAA P RF++++  L+ +    +L+  P +IL NK D P+
Sbjct: 56  QARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 115

Query: 140 AVSADELARYLDLKKL-------DERVCMFEAVSGYDG 170
           AVS  EL   L L           +R       S    
Sbjct: 116 AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMR 153

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 9e-13
 Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 6/155 (3%)

Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
           T   +LI+G    GK++LL +        +      I     +    ++ + +KL  WD 
Sbjct: 6   TTLKILIIGESGVGKSSLLLRF--TDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDT 63

Query: 76  GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
            GQ   R++   YY  A  V+ V D      F      L ++           +++ NK 
Sbjct: 64  AGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKI 123

Query: 136 DLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           D  +     E+ R   LK   +   +F   S    
Sbjct: 124 DKENR----EVDRNEGLKFARKHSMLFIEASAKTC 154

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (137), Expect = 2e-11
 Identities = 35/153 (22%), Positives = 59/153 (38%), Gaps = 5/153 (3%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
           F V+++G    GKT LL + K   + + G     +       +  ++    KL  WD  G
Sbjct: 7   FKVMLVGDSGVGKTCLLVRFKD-GAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 65

Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
           Q   RS+   YY +AHA++ + D    + F++ +  L ++        A +L+       
Sbjct: 66  QERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA 125

Query: 138 PDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
            + V   E    L      E    F   S   G
Sbjct: 126 HERVVKREDGEKL----AKEYGLPFMETSAKTG 154

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.0 bits (134), Expect = 5e-11
 Identities = 21/98 (21%), Positives = 32/98 (32%), Gaps = 2/98 (2%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
           F +LI+G    GKT+ L +      +        +     +          KL  WD  G
Sbjct: 6   FKILIIGNSSVGKTSFLFRY--ADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 63

Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALE 115
           Q   R+I   YY  A   + + D      F   +    
Sbjct: 64  QERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWST 101

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 7e-11
 Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 2/92 (2%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
           F  L++G    GK+ LL +   +    +      I    G  I  +     KL  WD  G
Sbjct: 6   FKFLVIGNAGTGKSCLLHQF--IEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 63

Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
           Q   RS+   YY  A   + V D      +  
Sbjct: 64  QERFRSVTRSYYRGAAGALLVYDITSRETYNA 95

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 8e-11
 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 3/119 (2%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
           F V+++G    GK+ LL +     +         I         +++    K   WD  G
Sbjct: 5   FKVVLIGDSGVGKSNLLSRF--TRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 62

Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
           Q   R I   YY  A   + V D A    +E+ +  L+++  + D     ++++ NK D
Sbjct: 63  QERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSD 120

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (131), Expect = 2e-10
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 10/123 (8%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS----NSKLVFW 73
           F ++++G    GKT L+ +        +GL P     T+G++     V       KL  W
Sbjct: 6   FKIVLIGNAGVGKTCLVRRF------TQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 59

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  GQ   RSI + YY  A+A++   D  C   F      L ++ +    +   +L+   
Sbjct: 60  DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 119

Query: 134 KQD 136
              
Sbjct: 120 IDL 122

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 3e-10
 Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 20/135 (14%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV------------ 65
             +L LG    GKTT L +        +     + + TVG++     V            
Sbjct: 6   IKLLALGDSGVGKTTFLYRY------TDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSG 59

Query: 66  --SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL 123
                 L  WD  GQ   RS+   ++ +A   + + D      F + +  + ++  N   
Sbjct: 60  KAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYC 119

Query: 124 QGAPLLILANKQDLP 138
           +   ++++ NK DLP
Sbjct: 120 ENPDIVLIGNKADLP 134

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 2e-09
 Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 9/125 (7%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFW--- 73
           E+ V++LG    GK+ L  +       V G   ++  PT+     +    +S        
Sbjct: 3   EYKVVVLGSGGVGKSALTVQF------VTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEIL 56

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
           D  G     S+ + Y +     + V        F+D K   ++++R +  +  P++++ N
Sbjct: 57  DTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGN 116

Query: 134 KQDLP 138
           K DL 
Sbjct: 117 KVDLE 121

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 2e-09
 Identities = 29/119 (24%), Positives = 42/119 (35%), Gaps = 3/119 (2%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
           F  +I+G    GK+ LL +               +       +  I+    KL  WD  G
Sbjct: 4   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA--RMVNIDGKQIKLQIWDTAG 61

Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
           Q   RSI   YY  A   + V D      F    + LE   R        ++++ NK D
Sbjct: 62  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLED-ARQHSSSNMVIMLIGNKSD 119

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 2e-09
 Identities = 55/154 (35%), Positives = 81/154 (52%), Gaps = 7/154 (4%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  +LILG+D AGKTT+L +L+              +PT+G N+  +   N K   WDLG
Sbjct: 5   EMRILILGLDGAGKTTILYRLQ-------VGEVVTTIPTIGFNVETVTYKNLKFQVWDLG 57

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
           G   +R  W  YY    AV++V+D+    R   SK+ L  +L  E+L+ A L++ ANKQD
Sbjct: 58  GLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQD 117

Query: 137 LPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           +  A+++ E+A  L L  L +R       S   G
Sbjct: 118 MEQAMTSSEMANSLGLPALKDRKWQIFKTSATKG 151

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 2e-09
 Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 9/124 (7%)

Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK---LVF 72
           TE+ ++++G    GK+ L  +L      ++    D   PT+  +  +  V + +   L  
Sbjct: 2   TEYKLVVVGAGGVGKSALTIQL------IQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 55

Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
            D  GQ    ++ ++Y       + V        FED     E++ R +D    P++++ 
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115

Query: 133 NKQD 136
           NK D
Sbjct: 116 NKCD 119

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.4 bits (119), Expect = 8e-09
 Identities = 29/141 (20%), Positives = 47/141 (33%), Gaps = 20/141 (14%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL--NIGRIEVSNSKLVFWDLGG 77
           ++I G   +GKT+LL  L +          D + PTV     +   +   S +   D  G
Sbjct: 6   IIIAGPQNSGKTSLLTLLTT----------DSVRPTVVSQEPLSAADYDGSGVTLVDFPG 55

Query: 78  QPGLRSIWEKYY-----EEAHAVVFVIDAACPSRFEDSKTALEKV---LRNEDLQGAPLL 129
              LR     Y           +  V     P +   +   L  +     +    G  +L
Sbjct: 56  HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115

Query: 130 ILANKQDLPDAVSADELARYL 150
           I  NK +L  A    ++   L
Sbjct: 116 IACNKSELFTARPPSKIKDAL 136

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 2e-08
 Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 3/119 (2%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
           F  +I+G    GK+ LL +            P  I    G  I  +     KL  WD  G
Sbjct: 5   FKYIIIGDMGVGKSCLLHQF--TEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 62

Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
           Q   R++   YY  A   + V D    S +    + L    RN       ++++ NK D
Sbjct: 63  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD-ARNLTNPNTVIILIGNKAD 120

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 4/146 (2%)

Query: 15  KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWD 74
            +  +V + G   +GK++ +  L+ + +  EG     +V            +   +VFWD
Sbjct: 54  SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWD 113

Query: 75  LGGQPGLRSIWEKYYEEAHAVVFVIDAACPS-RFEDSKTALEKVLRNEDLQGAPLLILAN 133
           L G        + Y E+     +       + RF+ +   + K +            +  
Sbjct: 114 LPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISM---MKKEFYFVRT 170

Query: 134 KQDLPDAVSADELARYLDLKKLDERV 159
           K D      AD   +  D +K+ + +
Sbjct: 171 KVDSDITNEADGEPQTFDKEKVLQDI 196

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 47.6 bits (112), Expect = 6e-08
 Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 9/124 (7%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG---LNIGRIEVSNSKLVFWD 74
             V+++G    GK+ L  +       +     +   PT          ++    ++   D
Sbjct: 5   HKVIMVGSGGVGKSALTLQF------MYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILD 58

Query: 75  LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 134
             GQ    +I + Y+      + V        F  +    E++LR ++ +  P L++ NK
Sbjct: 59  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 118

Query: 135 QDLP 138
            DL 
Sbjct: 119 SDLE 122

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.9 bits (110), Expect = 9e-08
 Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 11/126 (8%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK-----LVF 72
           F ++++G    GKT L  +         G  PDR   T+G++     V          ++
Sbjct: 3   FKIIVIGDSNVGKTCLTYRF------CAGRFPDRTEATIGVDFRERAVDIDGERIKIQLW 56

Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
              G +   +S+ + YY   HAVVFV D    + F      +E+  ++      P +++ 
Sbjct: 57  DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVG 116

Query: 133 NKQDLP 138
           NK DL 
Sbjct: 117 NKCDLR 122

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 1e-07
 Identities = 35/153 (22%), Positives = 59/153 (38%), Gaps = 6/153 (3%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
           F ++ LG    GKT+L+ +   +Y + +      I          +E    +L  WD  G
Sbjct: 1   FKLVFLGEQSVGKTSLITRF--MYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 58

Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDL 137
           Q   RS+   Y  ++ A V V D    + F+ +   ++ V          ++++ NK DL
Sbjct: 59  QERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDL 117

Query: 138 PDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
            D             K+L+    MF   S   G
Sbjct: 118 ADKRQVSIEEGERKAKELN---VMFIETSAKAG 147

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 2e-07
 Identities = 25/124 (20%), Positives = 53/124 (42%), Gaps = 9/124 (7%)

Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLV---F 72
            E+ +++LG    GK+ L  +       V+G+  ++  PT+  +  +    + +      
Sbjct: 2   REYKLVVLGSGGVGKSALTVQF------VQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEI 55

Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
            D  G     ++ + Y +       V      S F D +   E++LR +D +  P++++ 
Sbjct: 56  LDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVG 115

Query: 133 NKQD 136
           NK D
Sbjct: 116 NKCD 119

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (105), Expect = 6e-07
 Identities = 32/155 (20%), Positives = 61/155 (39%), Gaps = 3/155 (1%)

Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
           T   +++LG    GK++++ +   V ++        I          I     K   WD 
Sbjct: 2   TSIKLVLLGEAAVGKSSIVLRF--VSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDT 59

Query: 76  GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQ 135
            GQ    S+   YY  A A + V D   P  F  ++  ++++   +  +   + ++ NK 
Sbjct: 60  AGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKEL-HEQASKDIIIALVGNKI 118

Query: 136 DLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG 170
           D+       ++AR    K  +E+  +F   S   G
Sbjct: 119 DMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTG 153

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 1e-06
 Identities = 23/126 (18%), Positives = 51/126 (40%), Gaps = 9/126 (7%)

Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLV---F 72
             + ++++G    GK+ L  +        + +      PT+  +  +    +++      
Sbjct: 3   PTYKLVVVGDGGVGKSALTIQF------FQKIFVPDYDPTIEDSYLKHTEIDNQWAILDV 56

Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
            D  GQ    ++ E+Y       + V      + FE      + +LR +D +  P++++A
Sbjct: 57  LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 116

Query: 133 NKQDLP 138
           NK DL 
Sbjct: 117 NKVDLM 122

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 2e-06
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 2/96 (2%)

Query: 16  TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL 75
            +F +++LG    GK++L+ +   V           I          ++ +  K   WD 
Sbjct: 5   CQFKLVLLGESAVGKSSLVLRF--VKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDT 62

Query: 76  GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
            GQ    S+   YY  A A + V D      F  +K
Sbjct: 63  AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK 98

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 3e-06
 Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 10/123 (8%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSK---LVFWDLG 76
            +++G    GKT LL              P   VPTV  N     +   +   L  +D  
Sbjct: 6   CVVVGDGAVGKTCLLISY------TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 59

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
           GQ     +    Y +    +       PS FE+ K      + +      P L++  + D
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQID 118

Query: 137 LPD 139
           L D
Sbjct: 119 LRD 121

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 4e-06
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 2/92 (2%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
           F V++LG    GKT+L+ +     +         +  +       I      L  WD  G
Sbjct: 4   FKVVLLGEGCVGKTSLVLRY--CENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61

Query: 78  QPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109
           Q    ++   YY +++  + V D      F+ 
Sbjct: 62  QERFHALGPIYYRDSNGAILVYDITDEDSFQK 93

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 1e-05
 Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 5/136 (3%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77
           F V++LG    GK++L+ +   V +  +      I          ++     +  WD  G
Sbjct: 7   FKVILLGDGGVGKSSLMNRY--VTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAG 64

Query: 78  QPGLRSIWEKYYEEAHAVV---FVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 134
           Q   RS+   +Y  +   +    V D+       + K         ++ +  P +IL NK
Sbjct: 65  QERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNK 124

Query: 135 QDLPDAVSADELARYL 150
            D+ +   + E A+  
Sbjct: 125 IDISERQVSTEEAQAW 140

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

 Score = 41.7 bits (97), Expect = 1e-05
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 8/88 (9%)

Query: 80  GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD 139
             R + EK  +    V  ++DA  P    +    +E +L+N+     P ++L NK D  D
Sbjct: 5   ARREVTEKL-KLIDIVYELVDARIPMSSRNP--MIEDILKNK-----PRIMLLNKADKAD 56

Query: 140 AVSADELARYLDLKKLDERVCMFEAVSG 167
           A    +   + + + +           G
Sbjct: 57  AAVTQQWKEHFENQGIRSLSINSVNGQG 84

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.7 bits (91), Expect = 4e-05
 Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 14/154 (9%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG-----LNIGRIEVSNSKLVF 72
             V+ILG    GKT+L+ +       V      +   T+G       +       + +  
Sbjct: 3   LKVIILGDSGVGKTSLMHRY------VNDKYSQQYKATIGADFLTKEVTVDGDKVATMQV 56

Query: 73  WDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN---EDLQGAPLL 129
           WD  GQ   +S+   +Y  A   V V D    S FE+ K+  ++ L +      +  P +
Sbjct: 57  WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFV 116

Query: 130 ILANKQDLPDAVSADELARYLDLKKLDERVCMFE 163
           IL NK D  ++          +L K    + +F 
Sbjct: 117 ILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFL 150

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 9e-05
 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 10/122 (8%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKL---VFW 73
           ++ V + G    GK++L+ +       V+G   +  +PTV     ++   +  +      
Sbjct: 2   DYRVAVFGAGGVGKSSLVLRF------VKGTFRESYIPTVEDTYRQVISCDKSICTLQIT 55

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLR-NEDLQGAPLLILA 132
           D  G     ++      + HA + V         E+ K   E++     D++  P++++ 
Sbjct: 56  DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVG 115

Query: 133 NK 134
           NK
Sbjct: 116 NK 117

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (88), Expect = 1e-04
 Identities = 37/158 (23%), Positives = 61/158 (38%), Gaps = 13/158 (8%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KLVFW 73
             V+ILG    GKT+L+ +       V     ++   T+G +    EV        +  W
Sbjct: 3   LKVIILGDSGVGKTSLMNQY------VNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 56

Query: 74  DLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN---EDLQGAPLLI 130
           D  GQ   +S+   +Y  A   V V D   P+ F+   +  ++ L      D +  P ++
Sbjct: 57  DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 116

Query: 131 LANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGY 168
           L NK DL +   A + A+     K +       A    
Sbjct: 117 LGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAI 154

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 12/155 (7%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ- 78
           V ++G   AGK++LL  +   +  +   P   + P +G           +    D+ G  
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG---VVEVSEEERFTLADIPGII 60

Query: 79  ---PGLRSIWEKYYEE---AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILA 132
                 + +  ++         +++V+DAA            E    +  L   P L+  
Sbjct: 61  EGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL 120

Query: 133 NKQDLPDAVSADELARYLDLKKLDERVCMFEAVSG 167
           NK DL +  +   LA    L +    V    A++G
Sbjct: 121 NKVDLLEEEAVKALADA--LAREGLAVLPVSALTG 153

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.6 bits (86), Expect = 2e-04
 Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 8/100 (8%)

Query: 19  HVLILGIDKAGKTTLLEKL----KSVYSNVEGLPPDRIVPTV---GLNIGRIEVSNSKLV 71
            ++I+G    GK+TLL +L    +++ +++ G   D I   +   G+    ++ +  +  
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61

Query: 72  FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
             DL  + G+    ++  E+A  V+FV+DA+ P   ED K
Sbjct: 62  TNDLVERLGIERTLQE-IEKADIVLFVLDASSPLDEEDRK 100

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 2e-04
 Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN---SKLVFWDLG 76
           ++I+G    GKT LL          +   P+  VPTV  N       +    +L  WD  
Sbjct: 5   LVIVGDGACGKTCLLIVN------SKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTA 58

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
           G      +    Y +   ++       P   E+        +++      P++++ NK+D
Sbjct: 59  GLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKD 117

Query: 137 LPDA 140
           L + 
Sbjct: 118 LRND 121

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (83), Expect = 5e-04
 Identities = 26/147 (17%), Positives = 54/147 (36%), Gaps = 15/147 (10%)

Query: 20  VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG-- 77
           ++++G  + GKT LL          +   P+  VPTV  N       +++ +   L    
Sbjct: 5   IVVVGDSQCGKTALLHVF------AKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTS 58

Query: 78  -QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
             P   ++    Y ++ AV+   D + P   +      +  ++        +L++  K D
Sbjct: 59  GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSD 117

Query: 137 LPDAVSADELARYLDLKKLDERVCMFE 163
           L   VS        +L    +    ++
Sbjct: 118 LRTDVSTLV-----ELSNHRQTPVSYD 139

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 8e-04
 Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 9/125 (7%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDL- 75
              ++++G    GK+ L  +       ++        PT+  +  +I   +      D+ 
Sbjct: 6   THKLVVVGGGGVGKSALTIQF------IQSYFVSDYDPTIEDSYTKICSVDGIPARLDIL 59

Query: 76  --GGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN 133
              GQ    ++ E+Y    H  + V        F +      ++LR +D    P++++ N
Sbjct: 60  DTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGN 119

Query: 134 KQDLP 138
           K DL 
Sbjct: 120 KADLE 124

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 25/125 (20%), Positives = 39/125 (31%), Gaps = 10/125 (8%)

Query: 18  FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFW---D 74
              +++G    GKT LL              P+  VPTV  +         K       D
Sbjct: 10  LKCVVVGDGAVGKTCLLMSY------ANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYD 63

Query: 75  LGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK 134
             GQ     +    Y      +       P+ F++ K      L+       P L++  +
Sbjct: 64  TAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQ 122

Query: 135 QDLPD 139
            DL D
Sbjct: 123 IDLRD 127

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 23/129 (17%), Positives = 42/129 (32%), Gaps = 4/129 (3%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
               +++G    GKT LL    +     E +P      +       ++     L  WD  
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS---ANVMVDGKPVNLGLWDTA 61

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQD 136
           GQ     +    Y +    +       P+ FE+ +      +        P++++  K D
Sbjct: 62  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLD 120

Query: 137 LPDAVSADE 145
           L D     E
Sbjct: 121 LRDDKDTIE 129

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.6 bits (78), Expect = 0.002
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 2/95 (2%)

Query: 17  EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLG 76
           E  V +LG    GK++++ +   V  + +      I  +      + +    K + WD  
Sbjct: 4   ELKVCLLGDTGVGKSSIMWRF--VEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 61

Query: 77  GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111
           G    R++   YY  + A + V D      F   K
Sbjct: 62  GLERFRALAPMYYRGSAAAIIVYDITKEETFSTLK 96

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	170
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.98
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.97
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.97
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.97
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.96
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.96
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.96
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.96
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.96
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.95
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.95
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.95
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.95
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.95
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.94
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.94
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.94
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.92
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.9
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.89
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.88
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.88
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.87
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.87
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.87
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.86
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.86
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.86
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.86
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.85
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.84
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.84
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.84
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.83
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.83
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.83
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.82
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.81
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.8
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.79
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.78
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.78
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.77
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.77
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.71
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.69
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.64
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.62
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.61
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.59
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.55
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.38
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.36
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.36
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.26
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.23
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.22
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.18
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.14
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.57
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.49
d1okkd2	207	GTPase domain of the signal recognition particle r	98.3
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.28
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.27
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.27
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.25
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.25
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.19
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.16
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.04
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.82
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.81
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.79
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.78
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.73
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.67
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.65
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.65
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.63
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.63
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.63
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.61
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.59
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.59
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.56
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.54
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.5
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.49
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.43
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.43
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.42
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.42
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.41
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.41
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.4
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.39
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.34
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.3
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.3
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.3
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.3
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.29
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.29
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.28
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.27
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.27
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.27
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.22
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.22
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.22
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.22
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.21
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.19
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.19
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.18
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.17
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.17
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.16
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.16
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.14
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.14
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.11
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.09
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.09
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.08
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.07
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.07
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.07
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.06
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.06
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.06
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.04
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.03
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.02
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.99
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.98
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.97
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.97
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.95
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.95
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.95
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.94
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.94
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.92
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.91
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.9
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.87
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.87
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.83
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.81
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.77
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.71
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.53
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.52
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.51
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.5
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.5
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.49
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.48
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.41
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.32
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.32
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.31
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.3
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.25
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.24
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.24
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.21
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.19
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.17
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.15
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	96.13
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.02
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.86
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.82
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.8
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.77
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.76
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.71
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.69
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.66
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.62
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.61
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.58
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.55
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.47
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.45
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	95.41
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.38
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.37
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.37
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.23
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.23
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.16
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.06
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.06
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.05
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.98
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.97
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.94
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.87
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.86
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.73
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.47
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.34
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.34
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	94.32
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.26
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.15
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	93.99
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.96
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.87
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.87
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.82
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	93.78
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.47
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.35
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.1
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.06
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	92.43
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	91.71
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	91.61
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	91.31
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	90.59
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	90.0
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	89.97
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	89.86
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	89.05
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	88.71
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	88.47
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	87.53
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	87.51
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	86.34
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	86.15
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	84.86
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	84.37
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	83.9
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	82.36
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	82.24
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	82.16
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	81.56

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=100.00  E-value=2.5e-31  Score=179.98  Aligned_cols=149  Identities=36%  Similarity=0.687  Sum_probs=134.4

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEE
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   95 (170)
                      +++||+++|++|+|||||++++..      +.....+.||.+.....++..+..+.+||+||++.+...+..+++.++++
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~------~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   74 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIAS------GQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAI   74 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH------SCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHc------CCCCCcccccceeeeeeeeeeeEEEEEeeccccccccccccccccccchh
Confidence            378999999999999999999987      44555667899988888999999999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        96 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++|+|+++..++.....++..+......++.|+++++||.|+.+.....++.+.+.........++++++||++|
T Consensus        75 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g  149 (164)
T d1zd9a1          75 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEK  149 (164)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             hcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCC
Confidence            999999999999999999999988777788999999999999988888888888877777778899999999987

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.98  E-value=9.9e-32  Score=184.81  Aligned_cols=162  Identities=39%  Similarity=0.648  Sum_probs=135.3

Q ss_pred             hhhhHHHHhh-hccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc
Q 030848            2 FSLFYGLWKY-IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG   80 (170)
Q Consensus         2 ~~~~~~~~~~-~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   80 (170)
                      |.+++++|.+ +.+++.+||+++|++|||||||++++..      +. .....+|.+........++..+.+||+||++.
T Consensus         1 ~~~~~~~~~~l~~~~k~~KI~lvG~~~vGKTsLi~~l~~------~~-~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~   73 (182)
T d1moza_           1 GNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQI------GE-VVTTKPTIGFNVETLSYKNLKLNVWDLGGQTS   73 (182)
T ss_dssp             CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC------SE-EEEECSSTTCCEEEEEETTEEEEEEEEC----
T ss_pred             ChhHHHHHHHHhCCCceEEEEEECCCCCCHHHHHHHHhc------CC-CCccccccceEEEEEeeCCEEEEEEecccccc
Confidence            4577888864 4667899999999999999999999964      11 12344677777778888999999999999999


Q ss_pred             chhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCcccccccee
Q 030848           81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVC  160 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  160 (170)
                      +...+..+++.++++++|+|++++.++.....++..........+.|+++++||+|+++..+..++.+.+.........+
T Consensus        74 ~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~  153 (182)
T d1moza_          74 IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSW  153 (182)
T ss_dssp             CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCE
T ss_pred             cchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCC
Confidence            99999999999999999999999999999999988887776667899999999999998888888888887666667789


Q ss_pred             EEEeeeccCC
Q 030848          161 MFEAVSGYDG  170 (170)
Q Consensus       161 ~~~~~Sa~~g  170 (170)
                      ++++|||++|
T Consensus       154 ~~~e~SA~~g  163 (182)
T d1moza_         154 SIVASSAIKG  163 (182)
T ss_dssp             EEEEEBGGGT
T ss_pred             EEEEEECCCC
Confidence            9999999987

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.97  E-value=4.1e-31  Score=180.37  Aligned_cols=153  Identities=37%  Similarity=0.718  Sum_probs=133.4

Q ss_pred             hhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhh
Q 030848           11 YIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        11 ~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      +.++++.+||+++|++|||||||++++..      +.. ....+|.+............+.+||+||++.....+..+++
T Consensus         6 ~~~~~k~~kIvlvG~~~vGKTSli~rl~~------~~~-~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   78 (173)
T d1e0sa_           6 KIFGNKEMRILMLGLDAAGKTTILYKLKL------GQS-VTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYT   78 (173)
T ss_dssp             HHHTTCCEEEEEEEETTSSHHHHHHHTTC------CCC-EEEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTT
T ss_pred             hhhCCCeEEEEEECCCCCCHHHHHHHHhc------CCC-CCccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhc
Confidence            33456889999999999999999999965      222 34456777777788888999999999999999999999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      .++++++|+|+++.+++..+..++..........+.|+++++||+|+++.....++.+.+....+....+++++|||++|
T Consensus        79 ~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg  158 (173)
T d1e0sa_          79 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSG  158 (173)
T ss_dssp             TCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred             ccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCC
Confidence            99999999999999999999999988887666678999999999999998888888888876667777899999999987

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=8.5e-31  Score=179.04  Aligned_cols=151  Identities=40%  Similarity=0.687  Sum_probs=132.0

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      ..++++||+++|++|+|||||++++.+      +. .....++.+.....+...+..+.+||++|++.+...+..+++.+
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~------~~-~~~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~   84 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLAS------ED-ISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENT   84 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCC------SC-CEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTC
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhc------CC-CCcceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhcc
Confidence            456789999999999999999999965      22 23445667777788888999999999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      |++++|+|+++..++.+...++..+.......+.|+++++||+|+.++....+..+.+.........+++++|||++|
T Consensus        85 ~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg  162 (176)
T d1fzqa_          85 DILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTG  162 (176)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             ceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence            999999999999999999999988887766678999999999999998888888888876666677889999999987

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.97  E-value=2e-30  Score=175.51  Aligned_cols=148  Identities=41%  Similarity=0.716  Sum_probs=130.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEE
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   95 (170)
                      +.+||+++|++|+|||||++++.+      . ......+|.+.....++.++..+.+||+||++.+...+..+++.++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~------~-~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   73 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNG------E-DVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGL   73 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTT------C-CCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcC------C-CCCcccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcc
Confidence            368999999999999999999965      2 234566888888888999999999999999999988888999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        96 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++|+|+++..++.....++..........+.|+++++||+|+++..+.++..+.+.........+++++|||++|
T Consensus        74 i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  148 (165)
T d1ksha_          74 IWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTG  148 (165)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             eeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCC
Confidence            999999999999999888888877666678999999999999988888888888776666667889999999987

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.97  E-value=3.2e-30  Score=175.21  Aligned_cols=144  Identities=20%  Similarity=0.305  Sum_probs=118.4

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE---EEecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      +.+||+++|++|+|||||++++..      +.+...+.+|.+..+..   ++.....+.+||++|++++...+..+++.+
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~------~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~   76 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMY------DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG   76 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHC
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHh------CCCCcccCCccccccccccccccccccccccccccccchhhhhhhccccc
Confidence            568999999999999999999977      44555666777665432   333456799999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      |++++|+|++++.+++.+..|+..+......++.|+++|+||+|+.+  ..+.+++.+.++     ..+++|++|||++|
T Consensus        77 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sak~g  151 (168)
T d1u8za_          77 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD-----QWNVNYVETSAKTR  151 (168)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEECCTTTC
T ss_pred             ceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHH-----HcCCeEEEEcCCCC
Confidence            99999999999999999999999987765557899999999999976  467788888777     55678999999987

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.6e-30  Score=175.82  Aligned_cols=145  Identities=20%  Similarity=0.261  Sum_probs=119.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-E--EEecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-R--IEVSNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      .+.+||+++|++|+|||||++++.+      +...+.+.++...... .  ++.....+.+||++|++.+...+..+++.
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~   75 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQ------KIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT   75 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHH------SSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHH
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHh------CCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhh
Confidence            5789999999999999999999987      4444455555544332 2  23345779999999999999999999999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +|++++|||++++.++..+..|+..+.......+.|+++++||+|+..  ..+.+++.+.++     ..+++|++|||++
T Consensus        76 ~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~-----~~~~~~~e~Sak~  150 (169)
T d1x1ra1          76 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT-----KYNIPYIETSAKD  150 (169)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH-----HHTCCEEEEBCSS
T ss_pred             ccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHH-----HcCCEEEEEcCCC
Confidence            999999999999999999999999987765557899999999999976  467788888877     5567899999986


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       151 ~  151 (169)
T d1x1ra1         151 P  151 (169)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.9e-30  Score=174.22  Aligned_cols=141  Identities=23%  Similarity=0.276  Sum_probs=103.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EE--EecCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RI--EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   94 (170)
                      +||+++|++|+|||||++++.+.      .. ....++....+. .+  +.....+.+||++|++.+...+..+++.+|+
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~------~~-~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~   74 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGV------ED-GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDA   74 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCC------cc-CCcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhh
Confidence            68999999999999999999762      11 112223232221 23  3345789999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           95 VVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        95 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +|+|||++++.+++.+..|+..+.........|+++|+||+|+.+  ..+..+..+..+     ..+++|++|||++|
T Consensus        75 ~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sak~~  147 (168)
T d2gjsa1          75 YVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----VFDCKFIETSAALH  147 (168)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTSEEEECBTTTT
T ss_pred             hceeccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHH-----hcCCEEEEEeCCCC
Confidence            999999999999999999999987765557789999999999986  456777777776     55678999999987

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.2e-30  Score=174.51  Aligned_cols=146  Identities=18%  Similarity=0.259  Sum_probs=117.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE-EEEE--ecCeEEEEEEcCCCCcchhhHHHHhh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIE--VSNSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ..+.+||+++|++|+|||||++++..      +.....+.++..... ..+.  .....+.+||++|++++...+..+++
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~   76 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQ------SYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMR   76 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHH------SSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHH
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHh------CCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhc
Confidence            35679999999999999999999986      344444444433222 2233  34567899999999999999999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+|++|+|||++++.+++.+..|+..+.......+.|+++|+||+|+..  ....++..+.++     ...++|++|||+
T Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sak  151 (173)
T d2fn4a1          77 AGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGA-----SHHVAYFEASAK  151 (173)
T ss_dssp             HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECBTT
T ss_pred             cceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHH-----hcCCEEEEEeCC
Confidence            9999999999999999999999999887665557899999999999976  456677777776     456789999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       152 ~g  153 (173)
T d2fn4a1         152 LR  153 (173)
T ss_dssp             TT
T ss_pred             CC
Confidence            87

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.7e-30  Score=175.29  Aligned_cols=145  Identities=21%  Similarity=0.239  Sum_probs=119.8

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEE--ecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIE--VSNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      .+.+||+++|++|+|||||++++..      +...+.+.+|.+..+. .+.  .....+.+||++|.+.+..++..+++.
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~   75 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVE------GQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSID   75 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHH------SCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSS
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHh------CCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhh
Confidence            3568999999999999999999987      4445556667666533 233  345678999999999998888889999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +|++|+|||++++.+++.+..|+..+.......+.|+++++||+|+..  ..+.+++.+.++     ...++|++|||++
T Consensus        76 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~-----~~~~~~~e~Sak~  150 (167)
T d1xtqa1          76 INGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE-----SWNAAFLESSAKE  150 (167)
T ss_dssp             CCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEECCTTC
T ss_pred             hhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHH-----HcCCEEEEEecCC
Confidence            999999999999999999999999988766667899999999999976  466777777776     5567899999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       151 ~  151 (167)
T d1xtqa1         151 N  151 (167)
T ss_dssp             H
T ss_pred             C
Confidence            6

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.2e-30  Score=173.13  Aligned_cols=144  Identities=24%  Similarity=0.379  Sum_probs=117.6

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      +++||+++|++|+|||||++++..      +...+.+.++.+....   .++.....+.+||++|++.+...+..+++.+
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a   75 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVT------GTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG   75 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHH------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHh------CCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcc
Confidence            679999999999999999999987      4445555566554322   2223446799999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +++++|||++++.++.....|+..+......++.|+++|+||+|+..  ....++..+..+     ...++|++|||++|
T Consensus        76 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sak~g  150 (167)
T d1kaoa_          76 QGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE-----EWGCPFMETSAKSK  150 (167)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSCEEEECTTCH
T ss_pred             cceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHH-----HcCCeEEEECCCCC
Confidence            99999999999999999999999887665557899999999999976  455666666665     44568999999986

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.7e-30  Score=172.55  Aligned_cols=145  Identities=21%  Similarity=0.372  Sum_probs=119.6

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEE---EecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI---EVSNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      +++||+++|++|+|||||++++..      +.+.+.+.++.+......   +.....+.+||++|++.+...+..+++.+
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~   75 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQ------GIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNG   75 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH------CCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHC
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHc------CCCCCccCCccccccceeEEeeeeEEEeccccccCccccccccccccccc
Confidence            578999999999999999999987      555666667766554422   23456799999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      |++|+|||++++.+++++..|+..+......++.|+++|+||+|+..  ....++..+.++.    ...++|++|||++|
T Consensus        76 ~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~e~Sak~g  151 (167)
T d1c1ya_          76 QGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ----WCNCAFLESSAKSK  151 (167)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH----TTSCEEEECBTTTT
T ss_pred             ceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHH----hCCCEEEEEcCCCC
Confidence            99999999999999999999999987765557899999999999986  4556666666541    24578999999987

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-29  Score=172.81  Aligned_cols=144  Identities=20%  Similarity=0.320  Sum_probs=116.6

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE---EEecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      +++||+++|++|+|||||++++..      +...+.+.+|++.....   .+.....+.+||++|++.+...+..+++.+
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~------~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a   74 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVK------GTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKG   74 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHT------CCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHh------CCCCCccCcceeeccccceeeccccceeccccccccccccccccccccce
Confidence            468999999999999999999987      44555666777755432   223345788899999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCC-CCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNE-DLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      |++++|||++++.+++.+..|+..+.... ...+.|+++|+||+|+..  ..+.+++.+.++     ...++|++|||++
T Consensus        75 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~-----~~~~~~~e~Sak~  149 (171)
T d2erxa1          75 HAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALAR-----TWKCAFMETSAKL  149 (171)
T ss_dssp             SEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEECBTTT
T ss_pred             eEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHH-----HcCCeEEEEcCCC
Confidence            99999999999999999999988876532 236789999999999975  466777777776     5567899999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       150 ~  150 (171)
T d2erxa1         150 N  150 (171)
T ss_dssp             T
T ss_pred             C
Confidence            7

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1e-29  Score=172.59  Aligned_cols=142  Identities=21%  Similarity=0.229  Sum_probs=115.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEE---EecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI---EVSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      ++||+++|++|+|||||++++..      +.+.+.+.||++..+...   +.....+.+||++|++.+. .+..+++.++
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~------~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~   74 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLT------KRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGE   74 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH------SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCS
T ss_pred             cEEEEEECCCCCCHHHHHHHHHh------CCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccc
Confidence            68999999999999999999987      555566777877764432   2334679999999998775 4567889999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++++|||++++.++..+..|+.........++.|+++|+||+|+..  ..+.+++.+.++     ...++|++|||++|
T Consensus        75 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~-----~~~~~~~e~Saktg  148 (168)
T d2atva1          75 GFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT-----ELACAFYECSACTG  148 (168)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSEEEECCTTTC
T ss_pred             cceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHH-----HhCCeEEEEccccC
Confidence            9999999999999999988776655444446899999999999975  467888888877     55678999999986

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=2.2e-29  Score=171.09  Aligned_cols=142  Identities=27%  Similarity=0.382  Sum_probs=114.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE--EEe--cCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV--SNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      .+||+++|++|+|||||++++..      +...+...++.+.....  +..  ....+.+|||||++++..++..+++.+
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~a   78 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYAD------DSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGA   78 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH------SCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHc------CCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcC
Confidence            58999999999999999999987      34444555555544332  222  346799999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      |++|+|+|++++.++.....++..+.... ....|+++++||+|+.+  ..+.++..+.++     ...+++++|||++|
T Consensus        79 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~-----~~~~~~~e~Sak~g  152 (169)
T d3raba_          79 MGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLAD-----HLGFEFFEASAKDN  152 (169)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHC-CSCCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEECBTTTT
T ss_pred             CEEEEEEECccchhhhhhhhhhhhhhccc-CCcceEEEEEeecccccccccchhhhHHHHH-----HcCCEEEEecCCCC
Confidence            99999999999999999888887765443 36789999999999987  456677777766     45678999999987

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.9e-30  Score=176.61  Aligned_cols=141  Identities=18%  Similarity=0.380  Sum_probs=115.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe----cCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      .+||+++|++|+|||||++++..      +.....+.+|++........    ....+.+||++|++.+...+..+++.+
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~------~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~   76 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLT------GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA   76 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----------CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTC
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh------CCCCcccccceeccccccccccccccccccccccccccccceecchhcccc
Confidence            47999999999999999999976      55566777888776554333    457899999999999988889999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +++++|||++++.+++.+..|+..+....  ++.|+++|+||+|+......++..+...     ...++|++|||++|
T Consensus        77 ~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~-----~~~~~~~e~Sak~~  147 (170)
T d1i2ma_          77 QCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSN  147 (170)
T ss_dssp             CEEEEEEETTSGGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCSCSCCTTTSHHHHS-----SCSSEEEEEBTTTT
T ss_pred             cchhhccccccccccchhHHHHHHHhhcc--CCCceeeecchhhhhhhhhhhHHHHHHH-----HcCCEEEEEeCCCC
Confidence            99999999999999999999998886543  5899999999999988665555555555     56678999999987

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=4.8e-29  Score=169.06  Aligned_cols=144  Identities=24%  Similarity=0.354  Sum_probs=119.4

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe----cCeEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      .+++||+++|++|+|||||++++..      +.....+.+|..........    ....+.+||++|++.+...+..+++
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~   75 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVE------DSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYR   75 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHH------SCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHT
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHh------CCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHh
Confidence            4679999999999999999999987      55556666666666543322    3356889999999999999999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .++++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+  ....++..+.++     ...++|++|||+
T Consensus        76 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~SAk  149 (167)
T d1z0ja1          76 GSAAAIIVYDITKEETFSTLKNWVRELRQHGP-PSIVVAIAGNKCDLTDVREVMERDAKDYAD-----SIHAIFVETSAK  149 (167)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECBTT
T ss_pred             hccceEEEeeechhhhhhhHHHhhhhhhhccC-CcceEEEecccchhccccchhHHHHHHHHH-----HcCCEEEEEecC
Confidence            99999999999999999999999887765443 6899999999999975  466777777776     556789999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       150 ~~  151 (167)
T d1z0ja1         150 NA  151 (167)
T ss_dssp             TT
T ss_pred             CC
Confidence            87

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.6e-29  Score=170.22  Aligned_cols=142  Identities=24%  Similarity=0.385  Sum_probs=113.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE----EEEecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      .+||+++|++|+|||||++++.+      +.......++......    ..+.....+.+||++|++.+...+..+++.+
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~   77 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTE------KKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA   77 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH------SCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh------CCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCC
Confidence            47999999999999999999987      3333333333333322    2333456899999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      |++|+|+|+++..+++....|+..+.... ....|+++++||+|+..  ....+++.+.++     ...+++++|||++|
T Consensus        78 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Saktg  151 (166)
T d1z0fa1          78 AGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAE-----ENGLLFLEASAKTG  151 (166)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTC
T ss_pred             cEEEEEeccCchHHHHHHHHHHHHHHhhc-cccceEEEEcccccchhhcccHHHHHHHHHH-----HcCCEEEEEeCCCC
Confidence            99999999999999999999988876543 36789999999999865  455667777776     55678999999987

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.2e-29  Score=167.97  Aligned_cols=141  Identities=26%  Similarity=0.416  Sum_probs=117.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE----ecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE----VSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      +||+++|++|+|||||++++.+      +.....+.++.+.......    .....+.+||++|++.+...+..+++.++
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~   74 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMY------DSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSA   74 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCS
T ss_pred             CEEEEECCCCcCHHHHHHHHHh------CCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccc
Confidence            5899999999999999999987      4455566666665544322    24567999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++++|||++++.+++.+..|+..+..... ++.|+++|+||+|+.+  ....++..+..+     ...++|++|||++|
T Consensus        75 ~~ilv~d~~~~~s~~~i~~~~~~~~~~~~-~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~SAk~g  147 (164)
T d1yzqa1          75 AAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERKAK-----ELNVMFIETSAKAG  147 (164)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTC
T ss_pred             eEEEeeccccccchhhhHhhHHHHHHhcC-CCceEEEEecccchhhhhhhhHHHHHHHHH-----HcCCEEEEecCCCC
Confidence            99999999999999999999998876543 6799999999999975  556677777777     55678999999987

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.9e-29  Score=170.16  Aligned_cols=144  Identities=18%  Similarity=0.288  Sum_probs=114.4

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EE--EecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RI--EVSNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      ..+||+++|++|+|||||++++..      +.....+.++.+.... .+  +.....+.+||++|.+++...+..+++.+
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~   77 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQ------SYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTG   77 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHH------SCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh------CCCCcccCcccccceeeeeeeccccccccccccccccccccccccccccc
Confidence            458999999999999999999987      4444455555544322 22  23446799999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      |++++|+|.+++.+++.+..|+..+.........|+++|+||+|+..  ..+.+++.+.++     ...++|++|||++|
T Consensus        78 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sak~~  152 (171)
T d2erya1          78 EGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLAR-----QLKVTYMEASAKIR  152 (171)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHH-----HTTCEEEECBTTTT
T ss_pred             ceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHH-----HcCCEEEEEcCCCC
Confidence            99999999999999999999998887766557899999999999975  467777877776     55678999999987

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.7e-29  Score=171.95  Aligned_cols=142  Identities=25%  Similarity=0.467  Sum_probs=115.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe--cCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      .+||+++|++|+|||||++++..      +.......++......  .+..  ....+.+|||||++.+..++..+++.+
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~------~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~   78 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQ------GLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA   78 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH------SSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh------CCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcc
Confidence            58999999999999999999987      4444444455544433  3333  346689999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +++++|+|++++.+++....++..+..... ...|+++++||+|+.+  ..+.+++.+..+     ...+++++|||++|
T Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~-----~~~~~~~~~SAktg  152 (171)
T d2ew1a1          79 NALILTYDITCEESFRCLPEWLREIEQYAS-NKVITVLVGNKIDLAERREVSQQRAEEFSE-----AQDMYYLETSAKES  152 (171)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCCEEECCTTTC
T ss_pred             ceEEEeeecccchhhhhhhhhhhhhccccc-ccccEEEEEeecccccccchhhhHHHHHHH-----hCCCEEEEEccCCC
Confidence            999999999999999999999988866432 5789999999999976  456677777776     45568999999987

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.3e-29  Score=169.18  Aligned_cols=144  Identities=21%  Similarity=0.301  Sum_probs=119.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE---EEecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR---IEVSNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      +++||+++|++|+|||||++++.+      +.....+.++.+.....   .......+.+||++|++.+...+..+++.+
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~   75 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQ------NHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG   75 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH------CCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHh------CCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhcc
Confidence            578999999999999999999987      44555556666655332   222456799999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +++++|+|++++.+++....|+..+......++.|+++++||+|+.. ....+++.+..+     ...++|++|||++|
T Consensus        76 ~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~e~Sak~g  149 (166)
T d1ctqa_          76 EGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLAR-----SYGIPYIETSAKTR  149 (166)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHH-----HHTCCEEECCTTTC
T ss_pred             cccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHH-----HhCCeEEEEcCCCC
Confidence            99999999999999999999999887765556799999999999976 455667766666     45568999999987

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.1e-29  Score=170.35  Aligned_cols=141  Identities=23%  Similarity=0.391  Sum_probs=115.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE--e--cCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE--V--SNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      .+||+++|++|+|||||++++..      +.....+.+|++.......  .  ....+.+||++|++++...+..+++.+
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~------~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~   75 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCK------GIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGA   75 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH------CCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTC
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh------CCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccC
Confidence            47999999999999999999987      4445555666665444322  2  346799999999999988888999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +++++|+|++++.+++.+..|+..+....  ++.|+++|+||+|+.+  ....+++.+.++     ...++|++|||++|
T Consensus        76 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sak~g  148 (164)
T d1z2aa1          76 QACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAK-----RLKLRFYRTSVKED  148 (164)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEECBTTTT
T ss_pred             ceEEEEEeccchhhhhhcccccccccccC--CCceEEEeeccCCcccceeeeehhhHHHHH-----HcCCEEEEeccCCC
Confidence            99999999999999999999998886543  5789999999999976  456677777776     55678999999987

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.5e-29  Score=171.99  Aligned_cols=143  Identities=20%  Similarity=0.290  Sum_probs=111.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      +.||+++|++|+|||||++++..      +...+.+.+|.+....   ..+.....+.+||++|++.+...+..+++.+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~   75 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSK------DQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTD   75 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             cEEEEEECCCCcCHHHHHHHHHh------CCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccch
Confidence            57999999999999999999987      4555566666654432   22234567999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--------------CCHHHHHhHhCccccccce
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLDERV  159 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~  159 (170)
                      ++|+|||++++.+|++...++........ ++.|+++++||+|+.+.              .+.++..+.++.    ...
T Consensus        76 ~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~----~~~  150 (177)
T d1kmqa_          76 VILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR----IGA  150 (177)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHH----TTC
T ss_pred             hhhhhcccchhHHHHHHHHHHHHHHHHhC-CCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHH----cCC
Confidence            99999999999999998888877766543 67999999999999752              233444444431    223


Q ss_pred             eEEEeeeccCC
Q 030848          160 CMFEAVSGYDG  170 (170)
Q Consensus       160 ~~~~~~Sa~~g  170 (170)
                      .+|+||||++|
T Consensus       151 ~~~~E~SAkt~  161 (177)
T d1kmqa_         151 FGYMECSAKTK  161 (177)
T ss_dssp             SEEEECCTTTC
T ss_pred             cEEEEecCCCC
Confidence            58999999987

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.5e-29  Score=173.19  Aligned_cols=146  Identities=18%  Similarity=0.289  Sum_probs=113.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE-EE--ecCeEEEEEEcCCCCcchhhHHHHhh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IE--VSNSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      .+..+||+++|++|+|||||++++..      +.+...+.+|+...... +.  .....+.+||++|++.+...+..+++
T Consensus         6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~------~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~   79 (185)
T d2atxa1           6 GALMLKCVVVGDGAVGKTCLLMSYAN------DAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP   79 (185)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHH------SSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCT
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHhh------CCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhccc
Confidence            46779999999999999999999977      44445555665543332 22  24467899999999999999999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--------------cCCHHHHHhHhCccccc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKLD  156 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--------------~~~~~~~~~~~~~~~~~  156 (170)
                      .+|++++|||++++.+|++...++....... .++.|+++|+||+|+.+              ..+.++..+.++.    
T Consensus        80 ~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~----  154 (185)
T d2atxa1          80 MTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKE----  154 (185)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHH----
T ss_pred             ccceeeeccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHH----
Confidence            9999999999999999998887777776544 36899999999999865              2344555554441    


Q ss_pred             cceeEEEeeeccCC
Q 030848          157 ERVCMFEAVSGYDG  170 (170)
Q Consensus       157 ~~~~~~~~~Sa~~g  170 (170)
                      ...++|+||||++|
T Consensus       155 ~~~~~~~E~SAk~~  168 (185)
T d2atxa1         155 IGACCYVECSALTQ  168 (185)
T ss_dssp             HTCSCEEECCTTTC
T ss_pred             cCCCEEEEecCCCC
Confidence            12368999999987

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.7e-28  Score=166.74  Aligned_cols=143  Identities=24%  Similarity=0.398  Sum_probs=118.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE--e--cCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE--V--SNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      ..+||+++|++|+|||||++++..      +...+...++.+.......  .  ....+.+||++|++.+...+..+++.
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~   78 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVK------GQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRG   78 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH------SCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTT
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHh------CCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhC
Confidence            568999999999999999999987      5555666666666654332  2  34679999999999999999999999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      ++++++|+|.++..+++....|+..+..... ++.|+++++||+|+..  ..+.++..+..+     ...++|++|||++
T Consensus        79 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~-----~~~~~~~e~SAk~  152 (170)
T d1r2qa_          79 AQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANKRAVDFQEAQSYAD-----DNSLLFMETSAKT  152 (170)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTT
T ss_pred             cceEEEEeccchhhHHHHHHHHhhhhhhccC-CCceEEeecccccccccccccHHHHHHHHH-----hcCCEEEEeeCCC
Confidence            9999999999999999999999888866443 6899999999999976  456777777766     5567999999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       153 g  153 (170)
T d1r2qa_         153 S  153 (170)
T ss_dssp             C
T ss_pred             C
Confidence            7

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.96  E-value=5.1e-28  Score=165.00  Aligned_cols=161  Identities=35%  Similarity=0.659  Sum_probs=133.0

Q ss_pred             hhhhHHHHhhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcc
Q 030848            2 FSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL   81 (170)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   81 (170)
                      |.|++++| ..++++++||+++|.+|||||||++++.+      +... ...++.+.........+..+.+||++|++..
T Consensus         1 ~~~~~~~~-~~~~~k~~kI~vvG~~~~GKSsLi~rl~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~   72 (177)
T d1zj6a1           1 GILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSM------NEVV-HTSPTIGSNVEEIVINNTRFLMWDIGGQESL   72 (177)
T ss_dssp             CHHHHHHH-HHHTTSCEEEEEEESTTSSHHHHHHHHHT------TSCE-EEECCSCSSCEEEEETTEEEEEEECCC----
T ss_pred             ChhHHHHH-HHhCCCeEEEEEECCCCCCHHHHHHHHhc------CCCC-ccccccceeEEEEeecceEEEEecccccccc
Confidence            56899999 66778889999999999999999999976      2221 2334445555567778899999999999999


Q ss_pred             hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeE
Q 030848           82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCM  161 (170)
Q Consensus        82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  161 (170)
                      ...+..++..++++++++|.++..++...................|+++++||+|++......++.+.+.........++
T Consensus        73 ~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~  152 (177)
T d1zj6a1          73 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWH  152 (177)
T ss_dssp             CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEE
T ss_pred             ccchhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCE
Confidence            88889999999999999999999999888877777776666678999999999999998888888888887777788899


Q ss_pred             EEeeeccCC
Q 030848          162 FEAVSGYDG  170 (170)
Q Consensus       162 ~~~~Sa~~g  170 (170)
                      +++|||++|
T Consensus       153 ~~~~Sa~tg  161 (177)
T d1zj6a1         153 IQACCALTG  161 (177)
T ss_dssp             EEECBTTTT
T ss_pred             EEEEeCCCC
Confidence            999999987

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.8e-29  Score=168.68  Aligned_cols=142  Identities=23%  Similarity=0.335  Sum_probs=111.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe----cCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      .+||+++|++|+|||||++++..      +...+.+.++.+........    ....+.+||++|++++...+..+++.+
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~   76 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCE------NKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDS   76 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH------CCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTC
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh------CCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCC
Confidence            57999999999999999999987      55566666776665543322    347799999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      |++|+|||++++++++.+..|+..+.... ....|+++++||+|+..  ..+.+++.+.++     ...++|++|||++|
T Consensus        77 ~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~-----~~~~~~~e~Sak~~  150 (167)
T d1z08a1          77 NGAILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAE-----SVGAKHYHTSAKQN  150 (167)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEEBTTTT
T ss_pred             ceeEEEEeCCchhHHHhhhhhhhhccccc-ccccceeeeccccccccccccchHHHHHHHH-----HcCCeEEEEecCCC
Confidence            99999999999999999999988775443 25789999999999976  567888888777     45678999999987

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.9e-28  Score=166.71  Aligned_cols=144  Identities=24%  Similarity=0.396  Sum_probs=118.7

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe--cCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      +.+||+++|++|+|||||++++.+      +.......++.+....  .+..  ....+.+|||||++++..++..+++.
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   79 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTD------DTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRG   79 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH------SCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTT
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHh------CCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhc
Confidence            568999999999999999999987      4444444444444332  3333  44679999999999999999999999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +|++++|+|++++.+++....++.++.........|+++++||.|... ..+.++..+..+     ...++|++|||++|
T Consensus        80 ~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~tg  154 (177)
T d1x3sa1          80 AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR-----KHSMLFIEASAKTC  154 (177)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH-----HTTCEEEECCTTTC
T ss_pred             CCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHH-----HCCCEEEEEeCCCC
Confidence            999999999999999999999999998776667899999999999876 566777777777     55678999999987

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.2e-28  Score=165.36  Aligned_cols=143  Identities=27%  Similarity=0.453  Sum_probs=114.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE----EEEecCeEEEEEEcCCCCcchh-hHHHHhhc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRS-IWEKYYEE   91 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~   91 (170)
                      .+||+++|++|+|||||++++..      +.......++.+....    ........+.+||++|...... .+..+++.
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCA------GRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRN   75 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH------SSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTT
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh------CCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecC
Confidence            57999999999999999999987      4444444444444332    2333456799999999877654 57788999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +|++|+|||++++.+++.+..|+..+......++.|+++|+||+|+.+  ..+.+++.+.++     ..+++|++|||++
T Consensus        76 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~SAkt  150 (165)
T d1z06a1          76 VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD-----THSMPLFETSAKN  150 (165)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCCEEECCSSS
T ss_pred             CCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHH-----HCCCEEEEEeccc
Confidence            999999999999999999999999988766667899999999999976  467778877777     4556899999997


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       151 ~  151 (165)
T d1z06a1         151 P  151 (165)
T ss_dssp             G
T ss_pred             C
Confidence            4

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.8e-29  Score=171.51  Aligned_cols=144  Identities=20%  Similarity=0.298  Sum_probs=114.3

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEE-E--ecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI-E--VSNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      +.+||+++|++|+|||||++++..      +.+...+.+|++...... .  .....+.+||++|++++...+..+++.+
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~   75 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTT------NKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT   75 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred             CceEEEEECCCCcCHHHHHHHHHh------CCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhccccc
Confidence            468999999999999999999987      555566667776554322 2  2345799999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--------------CCHHHHHhHhCccccccc
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--------------VSADELARYLDLKKLDER  158 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~  158 (170)
                      |++++|||++++++|+++..|+........ ++.|+++++||+|+.+.              .+.++..+.++    ...
T Consensus        76 ~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~-~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~  150 (191)
T d2ngra_          76 DVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLAR----DLK  150 (191)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH----HTT
T ss_pred             ceeecccccchHHHHHHHHHHHHHHHhhcC-CCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHH----HcC
Confidence            999999999999999999887777665433 67999999999998642              45555555554    123


Q ss_pred             eeEEEeeeccCC
Q 030848          159 VCMFEAVSGYDG  170 (170)
Q Consensus       159 ~~~~~~~Sa~~g  170 (170)
                      .++|+||||++|
T Consensus       151 ~~~~~e~SAk~~  162 (191)
T d2ngra_         151 AVKYVECSALTQ  162 (191)
T ss_dssp             CSCEEECCTTTC
T ss_pred             CCeEEEEeCCCC
Confidence            467999999987

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.9e-28  Score=167.07  Aligned_cols=142  Identities=27%  Similarity=0.391  Sum_probs=115.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEE----EecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI----EVSNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      .+||+++|++|||||||++++..      +.....+.++........    +.....+.+||+||++.+...+..+++.+
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   78 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIE------KKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGA   78 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH------SSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh------CCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhC
Confidence            48999999999999999999987      444455555555554432    23456799999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +++++|+|++++.++..+..++..+..... ++.|+++++||+|+..  ....+...+..+     ...++|++|||++|
T Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sak~~  152 (174)
T d2bmea1          79 AGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDADREVTFLEASRFAQ-----ENELMFLETSALTG  152 (174)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTC
T ss_pred             CEEEEEEecccchhHHHHhhhhcccccccC-CceEEEEEEecccccchhchhhhHHHHHHH-----hCCCEEEEeeCCCC
Confidence            999999999999999999999998876543 6899999999999876  444555556655     45678999999987

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-28  Score=169.82  Aligned_cols=143  Identities=22%  Similarity=0.393  Sum_probs=116.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE--EEe------------cCeEEEEEEcCCCCcch
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV------------SNSKLVFWDLGGQPGLR   82 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------~~~~~~i~D~~G~~~~~   82 (170)
                      .+||+++|++|+|||||++++.+      +.....+.++.......  +..            ....+.+||++|++++.
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~   78 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTD------NKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR   78 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHC------SCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHhc------CCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhH
Confidence            58999999999999999999986      44455555555544332  211            23579999999999999


Q ss_pred             hhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCcccccccee
Q 030848           83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVC  160 (170)
Q Consensus        83 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~  160 (170)
                      .++..+++.+|++|+|||++++.+++.+..|+..+.........|+++|+||+|+..  +.+.+++.+.++     ..++
T Consensus        79 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~-----~~~~  153 (186)
T d2f7sa1          79 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD-----KYGI  153 (186)
T ss_dssp             HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTC
T ss_pred             HHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHH-----HcCC
Confidence            999999999999999999999999999999888877666557789999999999976  466777777776     4556


Q ss_pred             EEEeeeccCC
Q 030848          161 MFEAVSGYDG  170 (170)
Q Consensus       161 ~~~~~Sa~~g  170 (170)
                      +|++|||++|
T Consensus       154 ~~~e~Sak~~  163 (186)
T d2f7sa1         154 PYFETSAATG  163 (186)
T ss_dssp             CEEEEBTTTT
T ss_pred             EEEEEeCCCC
Confidence            8999999987

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.1e-27  Score=162.77  Aligned_cols=143  Identities=23%  Similarity=0.407  Sum_probs=118.5

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEe--cCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEV--SNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      ..+||+++|++|+|||||++++..      +.+.+.+.++.+..+.  .+..  ....+.+||++|++.+...+..+++.
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~------~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~   75 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVS------NDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRN   75 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH------SCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTT
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHh------CCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhc
Confidence            468999999999999999999987      5556666677766543  3333  34679999999999999999999999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-----cCCHHHHHhHhCccccccceeEEEeee
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-----AVSADELARYLDLKKLDERVCMFEAVS  166 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~S  166 (170)
                      +|++++|||++++.+++....|+........ ...|+++++||+|+.+     ..+.++..+.++     ...++|++||
T Consensus        76 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~-----~~~~~~~e~S  149 (170)
T d1ek0a_          76 AQAALVVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKIDMLQEGGERKVAREEGEKLAE-----EKGLLFFETS  149 (170)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHH-----HHTCEEEECC
T ss_pred             cceEEEEEeCCcccchhhhhhhhhhhccccc-cccceeeeecccccccccchhhhhHHHHHHHHH-----HcCCEEEEec
Confidence            9999999999999999999999887765443 5789999999999864     456677777776     5678999999


Q ss_pred             ccCC
Q 030848          167 GYDG  170 (170)
Q Consensus       167 a~~g  170 (170)
                      |++|
T Consensus       150 ak~g  153 (170)
T d1ek0a_         150 AKTG  153 (170)
T ss_dssp             TTTC
T ss_pred             CCCC
Confidence            9987

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.1e-28  Score=166.23  Aligned_cols=143  Identities=26%  Similarity=0.397  Sum_probs=111.5

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCccee--EEEEEe--cCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEV--SNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      ..+||+++|++|+|||||++++.+      +.......++.+..  ...+..  ....+.+||++|++.+...+..+++.
T Consensus         3 ~~~Ki~vvG~~~vGKTsLi~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~   76 (175)
T d2f9la1           3 YLFKVVLIGDSGVGKSNLLSRFTR------NEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRG   76 (175)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHH------SCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTT
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHh------CCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhc
Confidence            358999999999999999999987      44334443443333  223333  44679999999999999999999999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      ++++|+|||.+++.++.....++..+..... ++.|+++|+||+|+.+.  ...+......+     ....++++|||++
T Consensus        77 ~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~  150 (175)
T d2f9la1          77 AVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRHLRAVPTDEARAFAE-----KNNLSFIETSALD  150 (175)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCTTT
T ss_pred             cCeEEEEEECCCcccchhHHHHHHHHHHhcC-CCCcEEEEEeeecccccccchHHHHHHhhc-----ccCceEEEEecCC
Confidence            9999999999999999999999988876554 67899999999999863  44444455544     4557899999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       151 g  151 (175)
T d2f9la1         151 S  151 (175)
T ss_dssp             C
T ss_pred             C
Confidence            7

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.5e-28  Score=166.44  Aligned_cols=142  Identities=26%  Similarity=0.393  Sum_probs=111.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE----EEEecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      .+||+|+|++|+|||||++++.+      +...+.+.++......    ........+.+||++|++.+...+..+++.+
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~   76 (173)
T d2a5ja1           3 LFKYIIIGDTGVGKSCLLLQFTD------KRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA   76 (173)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHH------SCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred             eEEEEEECCCCcCHHHHHHHHhc------CCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhcc
Confidence            47999999999999999999987      3333333333333222    2223446899999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      |++++|+|++++.+++....|+..+..... ++.|+++|+||+|+..  ....++..+.++     ...++|++|||++|
T Consensus        77 d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~a~-----~~~~~~~e~Sa~tg  150 (173)
T d2a5ja1          77 AGALLVYDITRRETFNHLTSWLEDARQHSS-SNMVIMLIGNKSDLESRRDVKREEGEAFAR-----EHGLIFMETSAKTA  150 (173)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEECTTTC
T ss_pred             CEEEEEEeecChHHHHhHHHHHHHHHHhCC-CCCeEEEEecCCchhhhhhhHHHHHHHHHH-----HcCCEEEEecCCCC
Confidence            999999999999999999999988866543 6789999999999875  456666777766     55678999999997

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=2.1e-28  Score=167.74  Aligned_cols=143  Identities=22%  Similarity=0.344  Sum_probs=112.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE-EE--ecCeEEEEEEcCCCCcchhhHHHHhhccC
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEAH   93 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   93 (170)
                      ++||+++|++|+|||||++++..      +.+...+.+|....... +.  .....+.+||++|++.+...+..+++.+|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   75 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAK------DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSD   75 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH------SCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             ceEEEEECCCCcCHHHHHHHHHh------CCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhh
Confidence            57999999999999999999987      55555666666543332 22  34467899999999999888888999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--------------cCCHHHHHhHhCccccccce
Q 030848           94 AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--------------AVSADELARYLDLKKLDERV  159 (170)
Q Consensus        94 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--------------~~~~~~~~~~~~~~~~~~~~  159 (170)
                      ++|+|||++++.+|+....++........ ++.|+++|+||+|+..              ..+.++..+.++.    ...
T Consensus        76 ~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~----~~~  150 (179)
T d1m7ba_          76 AVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ----IGA  150 (179)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH----HTC
T ss_pred             hhheeeecccCCCHHHHHHHHHHHHhccC-CcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHH----hCC
Confidence            99999999999999999888877765443 5899999999999863              2455666666551    224


Q ss_pred             eEEEeeeccCC
Q 030848          160 CMFEAVSGYDG  170 (170)
Q Consensus       160 ~~~~~~Sa~~g  170 (170)
                      .+|+||||++|
T Consensus       151 ~~y~E~SAk~~  161 (179)
T d1m7ba_         151 ATYIECSALQS  161 (179)
T ss_dssp             SEEEECBTTTB
T ss_pred             CeEEEEeCCCC
Confidence            68999999986

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=5.8e-28  Score=167.48  Aligned_cols=142  Identities=27%  Similarity=0.444  Sum_probs=114.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE--EE--ecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IE--VSNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      .+||+|+|++|+|||||++++..      +.....+.++.+.....  +.  .....+.+|||||++++..++..+++.+
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~------~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a   79 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSD------DTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGS   79 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH------CCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTC
T ss_pred             EEEEEEECCCCcCHHHHHHHHhh------CCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccC
Confidence            48999999999999999999987      44445555665554432  33  3456799999999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +++|+|+|++++.++.....++..+.... ....|+++++||+|+.+  ....++......     ...++|++|||++|
T Consensus        80 ~~~i~v~d~t~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~e~SAk~g  153 (194)
T d2bcgy1          80 HGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD-----ANKMPFLETSALDS  153 (194)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCCEEECCTTTC
T ss_pred             CEEEEEEeCcchhhhhhHhhhhhhhhhcc-cCCceEEEEEeccccccccchhHHHHhhhhh-----ccCcceEEEecCcC
Confidence            99999999999999999998888876543 36789999999999987  445556666655     45568999999987

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.95  E-value=2e-26  Score=154.27  Aligned_cols=146  Identities=36%  Similarity=0.687  Sum_probs=122.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEE
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF   97 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   97 (170)
                      +||+++|++|||||||++++.+.      ...... ++........+.....+.+||++|.+.....+..+++.++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   73 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLG------EIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   73 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH------CSSCCC-CCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC------CCCccc-cceeeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEE
Confidence            68999999999999999999762      211222 22333445567788999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           98 VIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        98 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++|..++.++.....++.++.........|+++++||.|+.+.....++.............+++++|||++|
T Consensus        74 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg  146 (160)
T d1r8sa_          74 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSG  146 (160)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTT
T ss_pred             EEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCC
Confidence            9999999999999999999988777678999999999999998888887777766666677889999999997

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5e-28  Score=166.33  Aligned_cols=145  Identities=19%  Similarity=0.300  Sum_probs=110.0

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE---EEEecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG---RIEVSNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      .+.+||+++|++|+|||||++++..      +.....+.+|+.....   ..+.....+.+||++|++.+...+..+++.
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~------~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~   76 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQ   76 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHH------SSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTT
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHh------CCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccc
Confidence            4679999999999999999999987      4444555566654432   233345678999999999999999999999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC--------------CHHHHHhHhCcccccc
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV--------------SADELARYLDLKKLDE  157 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~--------------~~~~~~~~~~~~~~~~  157 (170)
                      +|++++|||++++.+|+.+..++........ .+.|+++|+||+|+.+..              ...+..+.++    ..
T Consensus        77 ~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~----~~  151 (183)
T d1mh1a_          77 TDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK----EI  151 (183)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH----HT
T ss_pred             cceeeeeeccchHHHHHHHHHHHHHHHHHhC-CCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHH----Hc
Confidence            9999999999999999998876666655433 578999999999986531              2222222222    12


Q ss_pred             ceeEEEeeeccCC
Q 030848          158 RVCMFEAVSGYDG  170 (170)
Q Consensus       158 ~~~~~~~~Sa~~g  170 (170)
                      ..++|+||||++|
T Consensus       152 ~~~~~~E~SAk~~  164 (183)
T d1mh1a_         152 GAVKYLECSALTQ  164 (183)
T ss_dssp             TCSEEEECCTTTC
T ss_pred             CCceEEEcCCCCC
Confidence            3479999999987

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.5e-27  Score=160.22  Aligned_cols=144  Identities=24%  Similarity=0.326  Sum_probs=100.0

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE-----ecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE-----VSNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      .+||+++|++|+|||||++++.+      +...+.+.++.+.......     .....+.+||++|++.+...+..+++.
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~   75 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVN------DKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRG   75 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH------SCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTT
T ss_pred             eEEEEEECCCCcCHHHHHHHHHc------CCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhc
Confidence            58999999999999999999987      3444444444443333222     223568999999999999999999999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcC---CCCCCCcEEEEeeCCCcccc---CCHHHHHhHhCccccccceeEEEee
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRN---EDLQGAPLLILANKQDLPDA---VSADELARYLDLKKLDERVCMFEAV  165 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~ii~v~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  165 (170)
                      ++++++|+|++++.+++.+..|+.++...   ....+.|+++++||+|+.+.   .+.++..+..+.    ...++|++|
T Consensus        76 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~----~~~~~~~e~  151 (175)
T d1ky3a_          76 ADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS----LGDIPLFLT  151 (175)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH----TTSCCEEEE
T ss_pred             cceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHH----cCCCeEEEE
Confidence            99999999999999999999998877543   23357899999999999763   455666665542    234679999


Q ss_pred             eccCC
Q 030848          166 SGYDG  170 (170)
Q Consensus       166 Sa~~g  170 (170)
                      ||++|
T Consensus       152 SA~~g  156 (175)
T d1ky3a_         152 SAKNA  156 (175)
T ss_dssp             BTTTT
T ss_pred             eCCCC
Confidence            99987

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.7e-27  Score=160.10  Aligned_cols=143  Identities=28%  Similarity=0.500  Sum_probs=106.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC-CCcccCCcceeEEE--EEec--CeEEEEEEcCCCCcchhhHHHHhh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP-PDRIVPTVGLNIGR--IEVS--NSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      ..+||+++|++++|||||++++..      +.. .....++++.....  +...  ...+.+|||||++.+..++..+++
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~   78 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKD------GAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYR   78 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH------SCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGG
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHh------CCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhc
Confidence            457999999999999999999976      332 22333444444443  3333  457899999999999999999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+|++++|+|++++.++.....++........ ...|+++++||+|+..  ..+.+++.+..+     ...++|++|||+
T Consensus        79 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~~k~d~~~~~~v~~~~~~~~~~-----~~~~~~~e~Sak  152 (170)
T d2g6ba1          79 DAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAK-----EYGLPFMETSAK  152 (170)
T ss_dssp             GCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHH-----HHTCCEEECCTT
T ss_pred             CCceeEEEecCCcccchhhhhhhhhhhhhccC-CCceEEEEEeeechhhcccccHHHHHHHHH-----HcCCEEEEEeCC
Confidence            99999999999999999999999888766543 5789999999999987  456677777776     556789999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       153 ~g  154 (170)
T d2g6ba1         153 TG  154 (170)
T ss_dssp             TC
T ss_pred             CC
Confidence            87

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.5e-27  Score=160.32  Aligned_cols=142  Identities=25%  Similarity=0.422  Sum_probs=110.7

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEec--CeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      -+||+++|++|+|||||++++..      +.....+.++.+....  .+...  ...+.+|||||++.+..++..+++.+
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~------~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   75 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVE------DKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGA   75 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH------CCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh------CCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC
Confidence            47999999999999999999987      4555566666655544  33333  45688899999999999999999999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +++++|+|++++.+++.+..++........ ...|++++++|.|+.+ ....++..+...     ...+++++|||++|
T Consensus        76 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~i~~~~k~d~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~  148 (166)
T d1g16a_          76 MGIILVYDITDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPFIESSAKND  148 (166)
T ss_dssp             EEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCTTCCSCHHHHHHHHH-----HHTCCEEECBTTTT
T ss_pred             CEEEEEEECCCccCHHHHHhhhhhhhcccc-CcceeeeecchhhhhhhhhhHHHHHHHHH-----hcCCeEEEECCCCC
Confidence            999999999999999988888777765433 6788999999999987 456667766666     55678999999987

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=4.2e-28  Score=165.28  Aligned_cols=143  Identities=24%  Similarity=0.392  Sum_probs=88.5

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE--EEEec--CeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS--NSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      ..+||+++|.+|+|||||++++..      +.......++.+....  .+...  ...+.+||+||++.+...+..+++.
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~   78 (173)
T d2fu5c1           5 YLFKLLLIGDSGVGKTCVLFRFSE------DAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   78 (173)
T ss_dssp             EEEEEEEECCCCC----------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTT
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHh------CCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccC
Confidence            347999999999999999999976      4444555566555433  34333  4678889999999999999999999


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +|++|+|||++++.+++.+..++..+.... ..+.|+++++||.|+..  ....+++.+.+.     ...++|++|||++
T Consensus        79 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~  152 (173)
T d2fu5c1          79 AMGIMLVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLAL-----DYGIKFMETSAKA  152 (173)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHHH-----HHTCEEEECCC--
T ss_pred             CCEEEEEEECCChhhHHHHHHHHHHhhhhc-cCCceEEEEEecccchhhcccHHHHHHHHHH-----hcCCEEEEEeCCC
Confidence            999999999999999999999988885443 36799999999999987  344455555555     5567899999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       153 g  153 (173)
T d2fu5c1         153 N  153 (173)
T ss_dssp             -
T ss_pred             C
Confidence            6

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.4e-26  Score=156.56  Aligned_cols=146  Identities=21%  Similarity=0.378  Sum_probs=113.4

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE--EEe--cCeEEEEEEcCCCCcchhhHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEV--SNSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      .+.+||+++|++|+|||||++++..      +.....+.+|++.....  ...  ....+.+||++|+.+....+..++.
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~   77 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVT------NKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYR   77 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHH------SCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGT
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHh------CCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhh
Confidence            3567999999999999999999987      44555555665555332  222  3467899999999999988999999


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHc---CCCCCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEeee
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLR---NEDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVS  166 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~S  166 (170)
                      .++++++++|.+++.+++.+..|+..+..   ....++.|+++|+||+|+.+ ....+++.+.++.    ...++|++||
T Consensus        78 ~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~----~~~~~~~e~S  153 (174)
T d1wmsa_          78 GSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD----NGDYPYFETS  153 (174)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH----TTCCCEEECC
T ss_pred             ccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHH----cCCCeEEEEc
Confidence            99999999999999999999888877653   33345789999999999976 5677777777762    2346899999


Q ss_pred             ccCC
Q 030848          167 GYDG  170 (170)
Q Consensus       167 a~~g  170 (170)
                      |++|
T Consensus       154 ak~~  157 (174)
T d1wmsa_         154 AKDA  157 (174)
T ss_dssp             TTTC
T ss_pred             CCCC
Confidence            9987

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1e-26  Score=158.28  Aligned_cols=144  Identities=19%  Similarity=0.272  Sum_probs=106.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeE--EE--EEecCeEEEEEEcCCCCcchh-hHHHHhhc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GR--IEVSNSKLVFWDLGGQPGLRS-IWEKYYEE   91 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~   91 (170)
                      -+||+++|++|+|||||++++.+....     .....++++...  ..  ++.....+.+||+++...... .+..+++.
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~-----~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~   77 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDS-----MDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV   77 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCT-----TCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCC-----ccccccceeeecceeeeccCCceeeeeeeccccccccccccccccccc
Confidence            479999999999999999999762111     112223333222  22  333456688999886433222 45567899


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc--cCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD--AVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +|++|+|||++++.+++.+..|+..+......++.|+++|+||+|+.+  ..+.++..+..+     ...++|++|||++
T Consensus        78 ~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~-----~~~~~~~e~Sak~  152 (172)
T d2g3ya1          78 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAV-----VFDCKFIETSAAV  152 (172)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEECBTTT
T ss_pred             cceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHH-----HcCCeEEEEeCCC
Confidence            999999999999999999999999988776667899999999999976  466777776666     5567899999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       153 g  153 (172)
T d2g3ya1         153 Q  153 (172)
T ss_dssp             T
T ss_pred             C
Confidence            7

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.6e-25  Score=152.75  Aligned_cols=141  Identities=17%  Similarity=0.258  Sum_probs=103.9

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-EEE--ecCeEEEEEEcCCCCcchhhHHHHhh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIE--VSNSKLVFWDLGGQPGLRSIWEKYYE   90 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~   90 (170)
                      +.+.+||+++|++|+|||||++++..      +... ...++....+. .+.  .+...+.+||++|++..     .+++
T Consensus         2 ~~p~~ki~vlG~~~vGKTsLi~~~~~------~~f~-~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~   69 (175)
T d2bmja1           2 SIPELRLGVLGDARSGKSSLIHRFLT------GSYQ-VLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSG   69 (175)
T ss_dssp             CCCEEEEEEECCTTTTHHHHHHHHHH------SCCC-CCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCH-----HHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHh------CCCC-CcCCccceeEEEEeecCceEEEEEEeeccccccc-----cccc
Confidence            45789999999999999999999987      2222 22233333322 233  34577999999998764     3678


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcC--CCCCCCcEEEEeeCCCccc----cCCHHHHHhHhCccccccceeEEEe
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRN--EDLQGAPLLILANKQDLPD----AVSADELARYLDLKKLDERVCMFEA  164 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~ii~v~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  164 (170)
                      .+|++|+|||++++.+|+.+..|...+...  ......|+++|+||.|+..    ..+.++..+.++    ....++|++
T Consensus        70 ~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~----~~~~~~~~e  145 (175)
T d2bmja1          70 WADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCA----DMKRCSYYE  145 (175)
T ss_dssp             HCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHH----TSTTEEEEE
T ss_pred             ccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHH----HhCCCeEEE
Confidence            999999999999999999998888877532  3346689999999998754    344556655543    245679999


Q ss_pred             eeccCC
Q 030848          165 VSGYDG  170 (170)
Q Consensus       165 ~Sa~~g  170 (170)
                      |||++|
T Consensus       146 ~SAk~~  151 (175)
T d2bmja1         146 TCATYG  151 (175)
T ss_dssp             EBTTTT
T ss_pred             eCCCCC
Confidence            999986

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=1.5e-26  Score=158.89  Aligned_cols=144  Identities=24%  Similarity=0.382  Sum_probs=113.1

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe----cCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----SNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      -+||+++|.+|+|||||++++.+      +.....+.+|.+........    ....+.+||++|+++....+..++..+
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~   75 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVN------KKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGA   75 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH------SCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh------CCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCc
Confidence            37999999999999999999987      44455666676665543332    346799999999999888888889999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcC---CCCCCCcEEEEeeCCCccc-cCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRN---EDLQGAPLLILANKQDLPD-AVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~ii~v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      +++++|+|.+++.++..+..|+..+...   ....+.|+++|+||+|+.+ ....++..+.+.    ....++|++|||+
T Consensus        76 ~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sak  151 (184)
T d1vg8a_          76 DCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAK  151 (184)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTT
T ss_pred             cEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHH----HhcCCeEEEEcCC
Confidence            9999999999999999999988777543   2234689999999999977 445555555443    2346789999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       152 ~~  153 (184)
T d1vg8a_         152 EA  153 (184)
T ss_dssp             TT
T ss_pred             CC
Confidence            87

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.92  E-value=1.5e-23  Score=141.07  Aligned_cols=148  Identities=38%  Similarity=0.647  Sum_probs=125.4

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEE
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   95 (170)
                      +++||+++|.+|+|||||++++.+      +... ...++.+.........+..+.+||.+|.+.........+...+++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQV------GEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAV   76 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH------SSCC-CCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhC------CCCc-ceecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhh
Confidence            469999999999999999999987      2222 234566666677778899999999999999988888888999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccCC
Q 030848           96 VFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus        96 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ++++|+.+..++.....++............|+++++||.|+.+.....++.+...........++|++|||++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g  151 (169)
T d1upta_          77 IYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKG  151 (169)
T ss_dssp             EEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTC
T ss_pred             hhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence            999999999999888888877777666678999999999999998888888777665555667899999999987

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.4e-23  Score=139.37  Aligned_cols=145  Identities=35%  Similarity=0.569  Sum_probs=123.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV   98 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   98 (170)
                      ||+++|++|+|||||+|++.+      +.. ....++.+.........+....+||++|.......+..+++.+++++++
T Consensus         2 KI~liG~~nvGKSSLln~l~~------~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKN------DRL-ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFL   74 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH------SCC-CCCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhC------CCC-CeeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeee
Confidence            799999999999999999987      222 2456778888888888899999999999999998889999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccc-------cccceeEEEeeeccCC
Q 030848           99 IDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKK-------LDERVCMFEAVSGYDG  170 (170)
Q Consensus        99 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sa~~g  170 (170)
                      +|.++...+.....++..........+.|+++++||.|++......++.+.+....       .....+++++|||++|
T Consensus        75 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg  153 (166)
T d2qtvb1          75 VDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMR  153 (166)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTT
T ss_pred             ccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCC
Confidence            99999999988888888888877778899999999999998888887777765322       2355678999999997

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.90  E-value=1.7e-22  Score=137.80  Aligned_cols=151  Identities=31%  Similarity=0.505  Sum_probs=116.7

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhcc
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA   92 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   92 (170)
                      +.++..||+++|++|||||||++++.+      +... ...++.......+...+..+..||+.++......+..+.+..
T Consensus         9 ~~~k~~kI~lvG~~~vGKTsLl~~l~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (186)
T d1f6ba_           9 LYKKTGKLVFLGLDNAGKTTLLHMLKD------DRLG-QHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAI   81 (186)
T ss_dssp             CTTCCEEEEEEEETTSSHHHHHHHHSC------C-------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGC
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHhC------CCCc-ceecccccceeEEEecccccccccccchhhhhhHHhhhhccc
Confidence            346789999999999999999999976      2222 233555566666778889999999999998888888889999


Q ss_pred             CEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccc------------ccccee
Q 030848           93 HAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKK------------LDERVC  160 (170)
Q Consensus        93 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~  160 (170)
                      +++++++|.++...+......+..........+.|+++++||.|++......++.+.+....            .....+
T Consensus        82 ~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (186)
T d1f6ba_          82 NGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPL  161 (186)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCE
T ss_pred             ceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCC
Confidence            99999999999999888887777776666667899999999999998888877777665221            133467


Q ss_pred             EEEeeeccCC
Q 030848          161 MFEAVSGYDG  170 (170)
Q Consensus       161 ~~~~~Sa~~g  170 (170)
                      ++++|||++|
T Consensus       162 ~~~~~SA~tg  171 (186)
T d1f6ba_         162 EVFMCSVLKR  171 (186)
T ss_dssp             EEEECBTTTT
T ss_pred             EEEEEeCCCC
Confidence            8999999997

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=8.3e-23  Score=140.61  Aligned_cols=144  Identities=21%  Similarity=0.392  Sum_probs=108.9

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEE
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   95 (170)
                      +++||+++|..|||||||++++...           ..++++.....++.....+.+||++|++.+...+..+++.++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~-----------~~~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~   69 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKII-----------HEAGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAI   69 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH-----------HSCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhC-----------CCCCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCcee
Confidence            4789999999999999999999651           12455566677888999999999999999999999999999999


Q ss_pred             EEEEeCCCcccH----------HHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-----------------cCCHHHHHh
Q 030848           96 VFVIDAACPSRF----------EDSKTALEKVLRNEDLQGAPLLILANKQDLPD-----------------AVSADELAR  148 (170)
Q Consensus        96 i~v~d~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-----------------~~~~~~~~~  148 (170)
                      ++|+|.++..++          .+....+..++........|+++++||+|+..                 .....+...
T Consensus        70 i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (195)
T d1svsa1          70 IFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAA  149 (195)
T ss_dssp             EEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHH
T ss_pred             eeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHH
Confidence            999999877654          34556666776666667899999999999742                 112222222


Q ss_pred             HhC------ccccccceeEEEeeeccCC
Q 030848          149 YLD------LKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       149 ~~~------~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ...      ........+++++|||++|
T Consensus       150 ~~~~~f~~~~~~~~~~~~~~~~tSA~~~  177 (195)
T d1svsa1         150 YIQCQFEDLNKRKDTKEIYTHFTCATDT  177 (195)
T ss_dssp             HHHHHHHTTCSCTTTCCEEEEECCTTCH
T ss_pred             HHHHHHHHHhcccCCCcceeEEEEeECC
Confidence            111      1112345788999999975

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.88  E-value=6.6e-22  Score=134.78  Aligned_cols=142  Identities=23%  Similarity=0.216  Sum_probs=91.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcc--------hhhHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL--------RSIWEKYY   89 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~   89 (170)
                      -.|+++|.+|+|||||+|++.+.....   .......+...........+..+.+|||||....        ......++
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~---~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~   82 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAP---ISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL   82 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSC---CCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCcee---ecccCCcccccccceeeeeeeeeeecccccccccccccchhccccccccc
Confidence            369999999999999999998732111   1112222334444456678889999999996432        22234456


Q ss_pred             hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +.+|++|+|+|++++....  ..++...+.... .+.|+++|+||+|+.+.  .++..+.++..   .....++++||++
T Consensus        83 ~~ad~il~v~D~~~~~~~~--~~~i~~~l~~~~-~~~piilv~NK~Dl~~~--~~~~~~~~~~~---~~~~~~~~iSA~~  154 (178)
T d1wf3a1          83 ADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKY--PEEAMKAYHEL---LPEAEPRMLSALD  154 (178)
T ss_dssp             SSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSS--HHHHHHHHHHT---STTSEEEECCTTC
T ss_pred             ccccceeeeechhhhhccc--ccchhhheeccc-cchhhhhhhcccccccC--HHHHHHHHHhh---cccCceEEEecCC
Confidence            7899999999998765433  233444443322 46899999999999653  23333333211   1123578899987


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       155 ~  155 (178)
T d1wf3a1         155 E  155 (178)
T ss_dssp             H
T ss_pred             C
Confidence            5

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1.5e-22  Score=139.81  Aligned_cols=147  Identities=22%  Similarity=0.422  Sum_probs=113.6

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEE
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV   95 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   95 (170)
                      +++||+++|..|||||||++++...      ..  .+.||++.....+......+.+||++|++.+...+..+++.++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~------~~--~~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   72 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRII------HG--SGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSI   72 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHH------TS--SCCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCC------CC--CCCceeeEEEEEEeccceeeeecccccccccccccccccccccee
Confidence            4689999999999999999999662      21  245899999888999999999999999999999999999999999


Q ss_pred             EEEEeCCCcc----------cHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc------------------CCHHHHH
Q 030848           96 VFVIDAACPS----------RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA------------------VSADELA  147 (170)
Q Consensus        96 i~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~------------------~~~~~~~  147 (170)
                      ++++|.++..          .+.+....+..++......+.|+++++||.|+...                  ...+...
T Consensus        73 i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (200)
T d2bcjq2          73 MFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAR  152 (200)
T ss_dssp             EEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHH
T ss_pred             eEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHH
Confidence            9999998654          34455666666666656678999999999998531                  1122222


Q ss_pred             hHh-----CccccccceeEEEeeeccCC
Q 030848          148 RYL-----DLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       148 ~~~-----~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +++     .........+.+++|||++|
T Consensus       153 ~~i~~~f~~~~~~~~~~~~~~~tSAk~~  180 (200)
T d2bcjq2         153 EFILKMFVDLNPDSDKIIYSHFTCATDT  180 (200)
T ss_dssp             HHHHHHHHTTCSCTTSCEEEEECCTTCH
T ss_pred             HHHHHHHHHhcccCCCceEEEEeEEEcC
Confidence            222     22334456788999999985

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=2.5e-22  Score=138.92  Aligned_cols=114  Identities=24%  Similarity=0.480  Sum_probs=91.4

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEE
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVV   96 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   96 (170)
                      .+||+++|++|||||||++++..         ...+.||++.....++.+...+.+||++|++.++..+..+++.+++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~f---------~~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~   72 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMRI---------IHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSIL   72 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH---------HHSCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc---------CCCCCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeE
Confidence            58999999999999999999942         123457889988899999999999999999999999999999999999


Q ss_pred             EEEeCCCcc----------cHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           97 FVIDAACPS----------RFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        97 ~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      +++|.++..          .++....++..+.......+.|+++++||+|+.+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~  125 (200)
T d1zcba2          73 FLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLE  125 (200)
T ss_dssp             EEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred             EEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhh
Confidence            999998643          3566777788888777678899999999999853

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=2.6e-21  Score=129.39  Aligned_cols=137  Identities=26%  Similarity=0.335  Sum_probs=96.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC--------cc-hhhHHHH
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP--------GL-RSIWEKY   88 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~-~~~~~~~   88 (170)
                      +||+++|.+|+|||||+|++.+.........+.   .+.......+...+..+.+|||||..        .. .......
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~   77 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPG---TTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQE   77 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSC---CSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeecccc---ccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHH
Confidence            689999999999999999998743222222221   22222233567788999999999921        11 1223344


Q ss_pred             hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      ++.+|++++|+|++++...+... ....+      ...++++++||.|+.+....+++.+.+.      ...+++++||+
T Consensus        78 ~~~ad~ii~v~d~~~~~~~~~~~-~~~~~------~~~~~i~~~~k~d~~~~~~~~~~~~~~~------~~~~~~~vSA~  144 (160)
T d1xzpa2          78 IEKADIVLFVLDASSPLDEEDRK-ILERI------KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISAL  144 (160)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH-HHHHH------TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGG
T ss_pred             HHhCCEEEEEEeCCCCcchhhhh-hhhhc------ccccceeeeeeccccchhhhHHHHHHhC------CCCcEEEEECC
Confidence            68899999999999887755432 22222      3568999999999999888888887775      23468999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       145 ~g  146 (160)
T d1xzpa2         145 KG  146 (160)
T ss_dssp             GT
T ss_pred             CC
Confidence            87

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=2.3e-22  Score=137.23  Aligned_cols=142  Identities=24%  Similarity=0.309  Sum_probs=91.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEE-EEecCeEEEEEEcCCCC-------cchhhHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IEVSNSKLVFWDLGGQP-------GLRSIWEKYYE   90 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~G~~-------~~~~~~~~~~~   90 (170)
                      +|+++|.+|||||||+|+|.+.........    ..+....... ....+..+.+|||||..       .........+.
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~   78 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYP----FTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIA   78 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCT----TCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccC----CCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHH
Confidence            589999999999999999976322222222    2233333322 33356789999999932       22233445568


Q ss_pred             ccCEEEEEEeCCCcccHHHHHHHHHHHHcC-CCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           91 EAHAVVFVIDAACPSRFEDSKTALEKVLRN-EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        91 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      .++++++++|..... ......+...+... ....+.|+++|+||+|+..+...++..+.+.     ....+++++||++
T Consensus        79 ~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~-----~~~~~~~~iSA~t  152 (180)
T d1udxa2          79 RTRVLLYVLDAADEP-LKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA-----REGLAVLPVSALT  152 (180)
T ss_dssp             SSSEEEEEEETTSCH-HHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTSCEEECCTTT
T ss_pred             hhhhhhhhccccccc-ccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHHH-----hcCCeEEEEEcCC
Confidence            899999999986542 22222222222111 1113579999999999987666666666665     4567899999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       153 g  153 (180)
T d1udxa2         153 G  153 (180)
T ss_dssp             C
T ss_pred             C
Confidence            7

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.86  E-value=1.5e-20  Score=132.06  Aligned_cols=153  Identities=14%  Similarity=0.141  Sum_probs=104.5

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHhhcccCCC--------------CCC---------------CcccCCcceeEEEE
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG--------------LPP---------------DRIVPTVGLNIGRI   63 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~--------------~~~---------------~~~~~~~~~~~~~~   63 (170)
                      .++..+||+++|+.++|||||+++|+........              ...               .....++......+
T Consensus         5 ~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~   84 (222)
T d1zunb3           5 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF   84 (222)
T ss_dssp             TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred             ccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEE
Confidence            3567899999999999999999999643222211              000               01112333444456


Q ss_pred             EecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCC-CcEEEEeeCCCccccCC
Q 030848           64 EVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQG-APLLILANKQDLPDAVS  142 (170)
Q Consensus        64 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~ii~v~nK~D~~~~~~  142 (170)
                      ...+..+.++|+||++.+.......+..+|++++|+|+.+.-.-+ ..+.+... ..   .+ ..+++++||+|+.+...
T Consensus        85 ~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Q-t~e~~~~~-~~---~gv~~iiv~vNK~D~~~~~~  159 (222)
T d1zunb3          85 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIA-SL---LGIKHIVVAINKMDLNGFDE  159 (222)
T ss_dssp             ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHH-HH---TTCCEEEEEEECTTTTTSCH
T ss_pred             eccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccc-hHHHHHHH-HH---cCCCEEEEEEEccccccccc
Confidence            667889999999999999988888889999999999998765433 23332222 22   23 45899999999986221


Q ss_pred             ------HHHHHhHhCccccccceeEEEeeeccCC
Q 030848          143 ------ADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       143 ------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                            ..++...++..++....++|+|+||++|
T Consensus       160 ~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G  193 (222)
T d1zunb3         160 RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKG  193 (222)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTC
T ss_pred             eehhhhHHHHhhhhHhhccCCCceEEEEEEcccC
Confidence                  2334444444556667899999999987

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.86  E-value=9.1e-22  Score=134.32  Aligned_cols=151  Identities=15%  Similarity=0.175  Sum_probs=98.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCC-CCC--cccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL-PPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEE   91 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   91 (170)
                      .+.++|.++|.+++|||||+|+|.+........ ...  ....+.......+...+..+.++|+||+..+.......+..
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~   82 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI   82 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhh
Confidence            467899999999999999999997522111100 000  11112222333456678899999999999998888888899


Q ss_pred             cCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHH---HHhHhCccccccceeEEEeeecc
Q 030848           92 AHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADE---LARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        92 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      +|++++|+|+++....+. ...+..+..    .+.|+++++||+|+.+......   ..+.+..........+++++||+
T Consensus        83 ~d~~ilv~d~~~g~~~~~-~~~~~~~~~----~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~  157 (179)
T d1wb1a4          83 IDLALIVVDAKEGPKTQT-GEHMLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK  157 (179)
T ss_dssp             CCEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred             ccccccccccccccchhh-hhhhhhhhh----cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Confidence            999999999998654432 333333322    4789999999999987543322   22222222223456789999999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       158 ~g  159 (179)
T d1wb1a4         158 TG  159 (179)
T ss_dssp             TC
T ss_pred             CC
Confidence            87

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=2.3e-21  Score=129.81  Aligned_cols=138  Identities=20%  Similarity=0.200  Sum_probs=94.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcch--------hhHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR--------SIWEKYY   89 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~   89 (170)
                      +||+++|++|||||||+|++.+.........+   ..+.......+...+..+.+||+||.....        .....++
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   78 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIA---GTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI   78 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSST---TCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeeccc---ccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHH
Confidence            79999999999999999999863222221111   122223334577788999999999943321        1223456


Q ss_pred             hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeeccC
Q 030848           90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYD  169 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (170)
                      +.+|++++++|..+..++.....+...+....  .+.|+++|+||+|+.+....          .......+++++||++
T Consensus        79 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~iilv~NK~Dl~~~~~~----------~~~~~~~~~~~iSAk~  146 (161)
T d2gj8a1          79 EQADRVLFMVDGTTTDAVDPAEIWPEFIARLP--AKLPITVVRNKADITGETLG----------MSEVNGHALIRLSART  146 (161)
T ss_dssp             HTCSEEEEEEETTTCCCCSHHHHCHHHHHHSC--TTCCEEEEEECHHHHCCCCE----------EEEETTEEEEECCTTT
T ss_pred             Hhccccceeeccccccchhhhhhhhhhhhhcc--cccceeeccchhhhhhhHHH----------HHHhCCCcEEEEECCC
Confidence            88999999999998887766555444443332  46899999999998653221          1123457899999998


Q ss_pred             C
Q 030848          170 G  170 (170)
Q Consensus       170 g  170 (170)
                      |
T Consensus       147 ~  147 (161)
T d2gj8a1         147 G  147 (161)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=4.6e-21  Score=133.27  Aligned_cols=150  Identities=17%  Similarity=0.089  Sum_probs=104.0

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC--CC-----------cccCCcceeEEEEEecCeEEEEEEcCCCCcc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP--PD-----------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL   81 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~--~~-----------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   81 (170)
                      |+.++|+++|+.++|||||+++|+..........  ..           ...-|+......+..++.++.++||||++.+
T Consensus         1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df   80 (204)
T d2c78a3           1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   80 (204)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhh
Confidence            5789999999999999999999964322221111  00           0123555566678889999999999999999


Q ss_pred             hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCC-cEEEEeeCCCccccCC-H----HHHHhHhCcccc
Q 030848           82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGA-PLLILANKQDLPDAVS-A----DELARYLDLKKL  155 (170)
Q Consensus        82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~ii~v~nK~D~~~~~~-~----~~~~~~~~~~~~  155 (170)
                      .......++.+|++|+|+|+.+.-..+. .+.+.....    .+. ++++++||+|+.+... .    .++.+.+.....
T Consensus        81 ~~~~~~~~~~aD~avlVvda~~Gv~~qt-~~~~~~~~~----~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~  155 (204)
T d2c78a3          81 IKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF  155 (204)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCC
Confidence            9888888899999999999987755543 333333323    244 4888999999865221 2    233344444445


Q ss_pred             ccceeEEEeeeccC
Q 030848          156 DERVCMFEAVSGYD  169 (170)
Q Consensus       156 ~~~~~~~~~~Sa~~  169 (170)
                      ....+++++.||..
T Consensus       156 ~~~~i~~i~~sa~~  169 (204)
T d2c78a3         156 PGDEVPVIRGSALL  169 (204)
T ss_dssp             CTTTSCEEECCHHH
T ss_pred             Ccccceeeeeechh
Confidence            55678899999864

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.85  E-value=2.5e-21  Score=133.70  Aligned_cols=152  Identities=14%  Similarity=0.084  Sum_probs=103.4

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCC----------CCcc--cCCcceeEEEEEecCeEEEEEEcCCCCcch
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP----------PDRI--VPTVGLNIGRIEVSNSKLVFWDLGGQPGLR   82 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~----------~~~~--~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   82 (170)
                      |+.++|+++|+.++|||||+++|...........          ..+.  .-|+......+...+..+.++||||+..|.
T Consensus         1 kp~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~   80 (196)
T d1d2ea3           1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV   80 (196)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHH
Confidence            5789999999999999999999965322111111          1111  123333344567788999999999999998


Q ss_pred             hhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCC-HH----HHHhHhCcccccc
Q 030848           83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVS-AD----ELARYLDLKKLDE  157 (170)
Q Consensus        83 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~-~~----~~~~~~~~~~~~~  157 (170)
                      ......+..+|++|+|+|+.+.-.-+ .++.+......   ...|+|+++||+|+.+... .+    ++...+.......
T Consensus        81 ~~~~~~~~~aD~allVVda~~G~~~Q-T~~~~~~a~~~---~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~  156 (196)
T d1d2ea3          81 KNMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG  156 (196)
T ss_dssp             HHHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHhhcCeEEEEEEcCCCCchh-HHHHHHHHHHh---cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCc
Confidence            88888889999999999999764433 33333333332   3467999999999975322 12    3333343344555


Q ss_pred             ceeEEEeeeccCC
Q 030848          158 RVCMFEAVSGYDG  170 (170)
Q Consensus       158 ~~~~~~~~Sa~~g  170 (170)
                      ..+|++++||++|
T Consensus       157 ~~~pii~iSa~~g  169 (196)
T d1d2ea3         157 EETPIIVGSALCA  169 (196)
T ss_dssp             TTSCEEECCHHHH
T ss_pred             ccCEEEEEEcccc
Confidence            6789999999864

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.84  E-value=2.8e-20  Score=127.23  Aligned_cols=147  Identities=21%  Similarity=0.148  Sum_probs=93.9

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc------------chh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG------------LRS   83 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------------~~~   83 (170)
                      ..+||+++|.+|+|||||+|++.+........   ....+.......+...+..+.++|+||...            ...
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   83 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSP---IPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNY   83 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECC---CC------CCEEEEETTEEEEESSCSCC-----------CCSCCH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeec---ccccccccceeeeccCCceeeeeccCCccccccccccccccchhH
Confidence            46899999999999999999998622111111   111222233334677788899999999432            223


Q ss_pred             hHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc--CCHHHHHhHhCccccccceeE
Q 030848           84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA--VSADELARYLDLKKLDERVCM  161 (170)
Q Consensus        84 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~  161 (170)
                      .....++.+|++++|+|++.+...+ ...+...+..    .+.|+++++||+|+...  ...++..+.+.........++
T Consensus        84 ~~~~~~~~~dvii~v~d~~~~~~~~-~~~~~~~~~~----~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (186)
T d1mkya2          84 RVVDSIEKADVVVIVLDATQGITRQ-DQRMAGLMER----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSP  158 (186)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSC
T ss_pred             HHHHHHhcCCEEEEeecccccchhh-HHHHHHHHHH----cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCe
Confidence            4455668899999999998664432 2333333322    46899999999998753  334555555543333344568


Q ss_pred             EEeeeccCC
Q 030848          162 FEAVSGYDG  170 (170)
Q Consensus       162 ~~~~Sa~~g  170 (170)
                      ++++||++|
T Consensus       159 i~~vSa~~g  167 (186)
T d1mkya2         159 LIFTSADKG  167 (186)
T ss_dssp             EEECBTTTT
T ss_pred             EEEEeCCCC
Confidence            999999987

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.84  E-value=5.1e-21  Score=132.24  Aligned_cols=151  Identities=18%  Similarity=0.198  Sum_probs=96.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE-----------------------EEEecCeEE
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-----------------------RIEVSNSKL   70 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~   70 (170)
                      +++.++|+++|+.++|||||+++|.+...+....... ...+....+.                       ........+
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~-~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELR-RGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   80 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGG-SCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHH-cCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeE
Confidence            5788999999999999999999997632221111000 0001111100                       011123468


Q ss_pred             EEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHH----HH
Q 030848           71 VFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSAD----EL  146 (170)
Q Consensus        71 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~----~~  146 (170)
                      .++||||++.+.......+..+|++++|+|+.+....+...+.+......   ...++++++||+|+.+.....    ++
T Consensus        81 ~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~~~~~  157 (195)
T d1kk1a3          81 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQI  157 (195)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             eeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh---cCccceeeeecccchhhHHHHHHHHHH
Confidence            99999999999888888889999999999998764333333333333221   245689999999997743322    22


Q ss_pred             HhHhCccccccceeEEEeeeccCC
Q 030848          147 ARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      .+.+.  ......++++++||++|
T Consensus       158 ~~~~~--~~~~~~~~iIpiSA~~G  179 (195)
T d1kk1a3         158 KEFIE--GTVAENAPIIPISALHG  179 (195)
T ss_dssp             HHHHT--TSTTTTCCEEECBTTTT
T ss_pred             HHHhc--cccCCCCeEEEEECCCC
Confidence            33332  22345678999999987

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.84  E-value=1.7e-20  Score=130.61  Aligned_cols=153  Identities=18%  Similarity=0.131  Sum_probs=95.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE----------------------------EEEe
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----------------------------RIEV   65 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~   65 (170)
                      .++.++|+++|+.++|||||+++|.+............. .+......                            ....
T Consensus         5 ~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (205)
T d2qn6a3           5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRG-MTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPK   83 (205)
T ss_dssp             CCCCEEEEEECSTTSSHHHHHHHHHSCCC---------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCE
T ss_pred             CCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhh-cccccchhhhhhhhhhhhhhhheeeecccceeeeeecccc
Confidence            478899999999999999999999753222111100000 00000000                            0011


Q ss_pred             cCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHH
Q 030848           66 SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADE  145 (170)
Q Consensus        66 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~  145 (170)
                      ....+.++|+||++.|.......+..+|++|+|+|+.+.-.....++.+......   .-.|+++++||+|+.+......
T Consensus        84 ~~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~---~i~~iIV~vNK~Dl~~~~~~~~  160 (205)
T d2qn6a3          84 FLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALS  160 (205)
T ss_dssp             EEEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECGGGSCHHHHHH
T ss_pred             ceEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc---CCceeeeccccCCCccchHHHH
Confidence            1246899999999999888888889999999999998764333334333333222   2458999999999976433222


Q ss_pred             HHhHhC--ccccccceeEEEeeeccCC
Q 030848          146 LARYLD--LKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       146 ~~~~~~--~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ......  ........++++++||++|
T Consensus       161 ~~~~~~~~l~~~~~~~~p~ipiSA~~g  187 (205)
T d2qn6a3         161 QYRQIKQFTKGTWAENVPIIPVSALHK  187 (205)
T ss_dssp             HHHHHHHHHTTSTTTTCCEEECBTTTT
T ss_pred             HHHHHHHHhccccCCCCeEEEEeCCCC
Confidence            222222  1223345689999999987

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=8.7e-20  Score=126.89  Aligned_cols=125  Identities=33%  Similarity=0.422  Sum_probs=91.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEe---cCeEEEEEEcCCCCcch-hhHHHHhhccCE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---SNSKLVFWDLGGQPGLR-SIWEKYYEEAHA   94 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~D~~G~~~~~-~~~~~~~~~~~~   94 (170)
                      +|+++|++|||||||++++.+      +..... .++.......+..   .+..+.+||++|++.+. ..+..+++.+++
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~------~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   74 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT------GQYRDT-QTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA   74 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH------SCCCCB-CCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHc------CCCCcc-cCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccc
Confidence            689999999999999999987      222222 2455555554544   45779999999998875 467788899999


Q ss_pred             EEEEEeCCCcccH-HHHHHHHHHHHcC--CCCCCCcEEEEeeCCCccccCCHHHHHhHh
Q 030848           95 VVFVIDAACPSRF-EDSKTALEKVLRN--EDLQGAPLLILANKQDLPDAVSADELARYL  150 (170)
Q Consensus        95 ~i~v~d~~~~~~~-~~~~~~~~~~~~~--~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~  150 (170)
                      +++|+|+++..+. .+...++..++..  .....+|+++++||+|++++.+.+++.+.+
T Consensus        75 ~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l  133 (207)
T d2fh5b1          75 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQL  133 (207)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred             cceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHH
Confidence            9999999987653 5555555554321  222568999999999999877776665543

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.83  E-value=2.2e-20  Score=126.27  Aligned_cols=140  Identities=20%  Similarity=0.164  Sum_probs=86.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc---------chhhHHHH
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG---------LRSIWEKY   88 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~   88 (170)
                      ..|+++|++|+|||||+|+|.+......   ......+.......++.....+.+||++|...         ........
T Consensus         1 a~V~liG~~n~GKSsLi~~L~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   77 (171)
T d1mkya1           1 ATVLIVGRPNVGKSTLFNKLVKKKKAIV---EDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNM   77 (171)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC-----------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCccee---cccCceeeccccccccccccccccccccceeeeeccccccccccccccc
Confidence            3689999999999999999976222111   11122233333445777888999999999211         12233445


Q ss_pred             hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      +..+|+++++.|.+....... ..+...+..    .+.|+++|+||+|+.++...+...+..+     ....+++++||+
T Consensus        78 ~~~ad~i~~~~~~~~~~~~~~-~~~~~~l~~----~~~pviiv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~i~iSAk  147 (171)
T d1mkya1          78 IREADLVLFVVDGKRGITKED-ESLADFLRK----STVDTILVANKAENLREFEREVKPELYS-----LGFGEPIPVSAE  147 (171)
T ss_dssp             HTTCSEEEEEEETTTCCCHHH-HHHHHHHHH----HTCCEEEEEESCCSHHHHHHHTHHHHGG-----GSSCSCEECBTT
T ss_pred             cccCcEEEEeecccccccccc-ccccccccc----ccccccccchhhhhhhhhhhHHHHHHHh-----cCCCCeEEEecC
Confidence            688999999999887655433 333333322    3678999999999976544333333333     122346889999


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus       148 ~g  149 (171)
T d1mkya1         148 HN  149 (171)
T ss_dssp             TT
T ss_pred             CC
Confidence            87

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.83  E-value=1.6e-20  Score=132.18  Aligned_cols=115  Identities=23%  Similarity=0.527  Sum_probs=99.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCE
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA   94 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   94 (170)
                      +...||+++|..|||||||++++...          ...||++.....++..+..+.+||++|++.++..|..+++.+++
T Consensus         4 k~~~KilllG~~~vGKTsll~~~~~~----------~~~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~   73 (221)
T d1azta2           4 RATHRLLLLGAGESGKSTIVKQMRIL----------HVVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTA   73 (221)
T ss_dssp             HHSEEEEEECSTTSSHHHHHHHHHHH----------HCCCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSE
T ss_pred             hhcCEEEEECCCCCCHHHHHHHHhcC----------CcCCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccc
Confidence            35689999999999999999999641          23478888888899999999999999999999999999999999


Q ss_pred             EEEEEeCCCc----------ccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           95 VVFVIDAACP----------SRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        95 ~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      +++|+|.++.          ....+....+..+++.....+.|+++++||+|+.+
T Consensus        74 ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~  128 (221)
T d1azta2          74 IIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA  128 (221)
T ss_dssp             EEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHH
T ss_pred             eEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhh
Confidence            9999998753          34566777788888887778899999999999854

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.82  E-value=1.7e-20  Score=128.01  Aligned_cols=139  Identities=20%  Similarity=0.181  Sum_probs=80.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc---------------chh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG---------------LRS   83 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------------~~~   83 (170)
                      .|+++|.+|+|||||+|+|.+......    .....|...  ..+.  ...+.+|||||...               +..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~----~~~g~T~~~--~~~~--~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~   73 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRG----KRPGVTRKI--IEIE--WKNHKIIDMPGFGFMMGLPKEVQERIKDEIVH   73 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSS----SSTTCTTSC--EEEE--ETTEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceee----CCCCEeecc--cccc--cccceecccCCceeccccccccccccchhhhh
Confidence            689999999999999999987321111    111112222  2233  34578999999311               112


Q ss_pred             hHHHHhhccCEEEEEEeCCCcccHHHH----------HHHHHHHHcCCCCCCCcEEEEeeCCCccccC--CHHHHHhHhC
Q 030848           84 IWEKYYEEAHAVVFVIDAACPSRFEDS----------KTALEKVLRNEDLQGAPLLILANKQDLPDAV--SADELARYLD  151 (170)
Q Consensus        84 ~~~~~~~~~~~~i~v~d~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~--~~~~~~~~~~  151 (170)
                      ......+.+|++++|+|+..+......          .+.+..+..    .+.|+++|+||+|+....  ......+.+.
T Consensus        74 ~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~----~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~  149 (184)
T d2cxxa1          74 FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE----LDIPTIVAVNKLDKIKNVQEVINFLAEKFE  149 (184)
T ss_dssp             HHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH----TTCCEEEEEECGGGCSCHHHHHHHHHHHHT
T ss_pred             hhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH----cCCCEEEEEeeeehhhhHHHHHHHHHHHhc
Confidence            233445789999999998744221111          111122212    478999999999986421  2222233333


Q ss_pred             ccccccceeEEEeeeccCC
Q 030848          152 LKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       152 ~~~~~~~~~~~~~~Sa~~g  170 (170)
                       .........++++||++|
T Consensus       150 -~~~~~~~~~~~~vSA~~g  167 (184)
T d2cxxa1         150 -VPLSEIDKVFIPISAKFG  167 (184)
T ss_dssp             -CCGGGHHHHEEECCTTTC
T ss_pred             -ccccccCCeEEEEECCCC
Confidence             222334456889999986

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.81  E-value=4.7e-20  Score=126.11  Aligned_cols=143  Identities=25%  Similarity=0.304  Sum_probs=86.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec-CeEEEEEEcCCC----C---cchhhHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQ----P---GLRSIWEKYY   89 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~----~---~~~~~~~~~~   89 (170)
                      .+|+++|.+|||||||+|+|.+........    ...|........... +..+.+|||||.    .   .........+
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~----~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~   77 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADY----HFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI   77 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESST----TSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCceecC----CCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHH
Confidence            468999999999999999997633222211    222333334444443 467999999993    1   1222233445


Q ss_pred             hccCEEEEEEeCCCcccHHH--HHHH--HHHHHcCCCCCCCcEEEEeeCCCccccCC-HHHHHhHhCccccccceeEEEe
Q 030848           90 EEAHAVVFVIDAACPSRFED--SKTA--LEKVLRNEDLQGAPLLILANKQDLPDAVS-ADELARYLDLKKLDERVCMFEA  164 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~--~~~~--~~~~~~~~~~~~~~ii~v~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  164 (170)
                      ..++.++++++.........  ....  ...........+.|+++++||+|+.+... .+.+.+.+      ....++++
T Consensus        78 ~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~------~~~~~v~~  151 (185)
T d1lnza2          78 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKL------TDDYPVFP  151 (185)
T ss_dssp             HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHC------CSCCCBCC
T ss_pred             HHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHh------ccCCcEEE
Confidence            77899999888765443221  1111  11222223335689999999999976422 22233222      23567899


Q ss_pred             eeccCC
Q 030848          165 VSGYDG  170 (170)
Q Consensus       165 ~Sa~~g  170 (170)
                      +||++|
T Consensus       152 iSA~~g  157 (185)
T d1lnza2         152 ISAVTR  157 (185)
T ss_dssp             CSSCCS
T ss_pred             EECCCC
Confidence            999987

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.80  E-value=1.4e-19  Score=127.70  Aligned_cols=115  Identities=22%  Similarity=0.246  Sum_probs=76.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEE----------------EEEecCeEEEEEEcCCCCcc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----------------RIEVSNSKLVFWDLGGQPGL   81 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~i~D~~G~~~~   81 (170)
                      ..|+++|.+++|||||+|+|.+........  ............                .+...+..+.++||||++.+
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f   83 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSAVASREA--GGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhcchheec--Cceeeeccccccccccccccccccccceeecccccccccccccceecc
Confidence            349999999999999999997632211110  001000011000                12344568999999999998


Q ss_pred             hhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        82 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      .......+..+|++|+|+|+.+.-..+ ....+..+..    .+.|+++++||+|+.+
T Consensus        84 ~~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~----~~~p~iivlNK~D~~~  136 (227)
T d1g7sa4          84 TTLRKRGGALADLAILIVDINEGFKPQ-TQEALNILRM----YRTPFVVAANKIDRIH  136 (227)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHH-HHHHHHHHHH----TTCCEEEEEECGGGST
T ss_pred             cccchhcccccceEEEEEecccCcccc-hhHHHHHhhc----CCCeEEEEEECccCCC
Confidence            777777778999999999998764433 2333333333    4789999999999876

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=2.4e-19  Score=127.20  Aligned_cols=154  Identities=14%  Similarity=0.179  Sum_probs=105.3

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCC---------------CCCC------------CcccCCcceeEEEEEec
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE---------------GLPP------------DRIVPTVGLNIGRIEVS   66 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~---------------~~~~------------~~~~~~~~~~~~~~~~~   66 (170)
                      .+++++|+++|+.++|||||+.+|+.....+.               ....            ....-|+......+...
T Consensus         3 ~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~   82 (239)
T d1f60a3           3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   82 (239)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred             CCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccC
Confidence            46789999999999999999999953222111               0000            01223555666678889


Q ss_pred             CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccH------HHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030848           67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF------EDSKTALEKVLRNEDLQGAPLLILANKQDLPDA  140 (170)
Q Consensus        67 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~  140 (170)
                      +.++.++|+||+..|.......+..+|++|+|+|+......      ..+.+.+......   .-.++|+++||+|+.+.
T Consensus        83 ~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~---gv~~iiv~iNKmD~~~~  159 (239)
T d1f60a3          83 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVKW  159 (239)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGTT
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc---CCCeEEEEEECCCCCCC
Confidence            99999999999999999889999999999999999854210      1122222222221   12458999999999763


Q ss_pred             CC------HHHHHhHhCccccccceeEEEeeeccCC
Q 030848          141 VS------ADELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       141 ~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                      ..      ..++.+.+...+.....++++++||.+|
T Consensus       160 d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G  195 (239)
T d1f60a3         160 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNG  195 (239)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTC
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCC
Confidence            32      2344444444455566789999999876

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.78  E-value=1.2e-18  Score=119.95  Aligned_cols=145  Identities=19%  Similarity=0.143  Sum_probs=83.3

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCc---c----------h
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG---L----------R   82 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---~----------~   82 (170)
                      .-.+|+++|.+|||||||+|+|.+...    .......++........ .......+.|++|...   .          .
T Consensus        22 ~~~~I~lvG~~n~GKSTLin~L~g~~~----~~~~~~~~~~t~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~   96 (195)
T d1svia_          22 GLPEIALAGRSNVGKSSFINSLINRKN----LARTSSKPGKTQTLNFY-IINDELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-----------------CCEEEE-EETTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcCCCc----eEEeecccceeeecccc-cccccceEEEEEeeccccccccccchhhhHH
Confidence            344899999999999999999986211    01111111111111112 2234456677777211   1          1


Q ss_pred             hhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEE
Q 030848           83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMF  162 (170)
Q Consensus        83 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (170)
                      .........++++++++|++.+..- ...+++..+..    .+.|+++|+||+|+.++....+..+.++.........++
T Consensus        97 ~~~~~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~  171 (195)
T d1svia_          97 ETYITTREELKAVVQIVDLRHAPSN-DDVQMYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL  171 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred             hhhhccccchhhhhhhhhccccccc-ccccccccccc----ccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCE
Confidence            1222333567899999999866442 22333333333    467999999999997766555554444322223456789


Q ss_pred             EeeeccCC
Q 030848          163 EAVSGYDG  170 (170)
Q Consensus       163 ~~~Sa~~g  170 (170)
                      +++||++|
T Consensus       172 ~~~SA~~~  179 (195)
T d1svia_         172 ILFSSETK  179 (195)
T ss_dssp             EECCTTTC
T ss_pred             EEEeCCCC
Confidence            99999986

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.78  E-value=1.1e-18  Score=122.79  Aligned_cols=153  Identities=17%  Similarity=0.218  Sum_probs=97.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCC---------------------------CCCcccCCcceeEEEEEecC
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL---------------------------PPDRIVPTVGLNIGRIEVSN   67 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~   67 (170)
                      |+.++|+++|+.++|||||+.+|+.........                           .......++......++..+
T Consensus         1 kp~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~   80 (224)
T d1jnya3           1 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   80 (224)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC
Confidence            468999999999999999999884311110000                           00111223344444577788


Q ss_pred             eEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccH------HHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC
Q 030848           68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF------EDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV  141 (170)
Q Consensus        68 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~  141 (170)
                      ..+.++||||+..|.......++-+|++|+|+|+.+....      ..+.+.+... ...  ...++++++||+|+....
T Consensus        81 ~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~-~~~--~~~~iIv~iNK~D~~~~~  157 (224)
T d1jnya3          81 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILA-KTM--GLDQLIVAVNKMDLTEPP  157 (224)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHH-HHT--TCTTCEEEEECGGGSSST
T ss_pred             ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHH-HHh--CCCceEEEEEcccCCCcc
Confidence            9999999999999999999999999999999999875211      1122211111 111  345789999999997532


Q ss_pred             -CH-------HHHHhHhCccccccceeEEEeeeccCC
Q 030848          142 -SA-------DELARYLDLKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       142 -~~-------~~~~~~~~~~~~~~~~~~~~~~Sa~~g  170 (170)
                       ..       .++.+.+...+.....++++++||..|
T Consensus       158 ~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G  194 (224)
T d1jnya3         158 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSG  194 (224)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTT
T ss_pred             ccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCC
Confidence             21       222233333445567789999999876

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=1.4e-18  Score=120.56  Aligned_cols=125  Identities=21%  Similarity=0.311  Sum_probs=86.2

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHH----hhc
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKY----YEE   91 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~----~~~   91 (170)
                      .+.+|+++|++|+|||||+|+|.+.      ...+.  .+.......++..+..+.+||+||++.....+..+    ...
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~------~~~~~--tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~   73 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTD------SVRPT--VVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKF   73 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHS------SCCCB--CCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC------CCCCe--EEecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhh
Confidence            3568999999999999999999872      11111  12222334466677889999999988775554444    455


Q ss_pred             cCEEEEEEeCCC-cccHHHHHHHHHHHH---cCCCCCCCcEEEEeeCCCccccCCHHHHHh
Q 030848           92 AHAVVFVIDAAC-PSRFEDSKTALEKVL---RNEDLQGAPLLILANKQDLPDAVSADELAR  148 (170)
Q Consensus        92 ~~~~i~v~d~~~-~~~~~~~~~~~~~~~---~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~  148 (170)
                      ++.+++++|+.+ ..+++....++..+.   ......+.|+++++||+|+.+....+...+
T Consensus        74 ~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~  134 (209)
T d1nrjb_          74 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKD  134 (209)
T ss_dssp             EEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHH
T ss_pred             ccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCcHHHHHH
Confidence            688888888764 556676666654443   233346799999999999987665544433

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.77  E-value=1.6e-18  Score=123.38  Aligned_cols=158  Identities=20%  Similarity=0.191  Sum_probs=87.7

Q ss_pred             hhhccCceeEEEEEcCCCCChHHHHHHHHhhcccCC--------------CC-------------CCCcccCCcceeEEE
Q 030848           10 KYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GL-------------PPDRIVPTVGLNIGR   62 (170)
Q Consensus        10 ~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~--------------~~-------------~~~~~~~~~~~~~~~   62 (170)
                      .....++.++|+++|+.++|||||+.+|+.......              +.             .......++......
T Consensus        17 ~~~~~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~   96 (245)
T d1r5ba3          17 KDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAY   96 (245)
T ss_dssp             HHHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCE
T ss_pred             HHhcCCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccc
Confidence            344567889999999999999999999943211110              00             000111233333335


Q ss_pred             EEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccH------HHHHHHHHHHHcCCCCCCCcEEEEeeCCC
Q 030848           63 IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRF------EDSKTALEKVLRNEDLQGAPLLILANKQD  136 (170)
Q Consensus        63 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~ii~v~nK~D  136 (170)
                      +...+..+.++|+||+..+..........+|++++|+|+.+...-      ....+.+......   .-.++++++||+|
T Consensus        97 ~~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~---~i~~iiv~iNKmD  173 (245)
T d1r5ba3          97 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ---GINHLVVVINKMD  173 (245)
T ss_dssp             EECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT---TCSSEEEEEECTT
T ss_pred             cccccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc---CCCeEEEEEEcCC
Confidence            666778999999999999998888888999999999999864211      0222222222221   2335899999999


Q ss_pred             ccccCC----HHHHHhHhCcc------ccccceeEEEeeeccCC
Q 030848          137 LPDAVS----ADELARYLDLK------KLDERVCMFEAVSGYDG  170 (170)
Q Consensus       137 ~~~~~~----~~~~~~~~~~~------~~~~~~~~~~~~Sa~~g  170 (170)
                      ++....    .+++.+.++..      ......++|+|+||++|
T Consensus       174 ~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G  217 (245)
T d1r5ba3         174 EPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTG  217 (245)
T ss_dssp             STTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTT
T ss_pred             CCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCC
Confidence            976432    22333333211      11234689999999987

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.71  E-value=1.8e-16  Score=113.98  Aligned_cols=129  Identities=17%  Similarity=0.127  Sum_probs=94.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCC------------C--CCcccCCcceeEEEEEecCeEEEEEEcCCCCcchh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGL------------P--PDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS   83 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~------------~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   83 (170)
                      -+|+++|+.|+|||||+.+++.........            .  .....-++......+.+++..+.++||||+.+|..
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~   86 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTI   86 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCST
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHH
Confidence            369999999999999999995432221110            0  11122355666677889999999999999999999


Q ss_pred             hHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC---CHHHHHhHhC
Q 030848           84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV---SADELARYLD  151 (170)
Q Consensus        84 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~---~~~~~~~~~~  151 (170)
                      .....++.+|++|+|+|+.+.-..+ +...|.....    .+.|.++++||+|.+...   ..+++++.+.
T Consensus        87 e~~~~l~~~D~avlVvda~~Gv~~~-T~~~w~~a~~----~~lP~i~fINKmDr~~ad~~~~l~ei~~~l~  152 (276)
T d2bv3a2          87 EVERSMRVLDGAIVVFDSSQGVEPQ-SETVWRQAEK----YKVPRIAFANKMDKTGADLWLVIRTMQERLG  152 (276)
T ss_dssp             THHHHHHHCCEEEEEEETTTSSCHH-HHHHHHHHHT----TTCCEEEEEECTTSTTCCHHHHHHHHHHTTC
T ss_pred             HHHHHHHhhhheEEeccccCCcchh-HHHHHHHHHH----cCCCEEEEEecccccccccchhHHHHHHHhC
Confidence            8888899999999999999775544 3344444433    589999999999998743   3455555555

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.69  E-value=5.8e-16  Score=110.96  Aligned_cols=115  Identities=21%  Similarity=0.207  Sum_probs=86.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCC-------CCCC-------cccCCcceeEEEEEecCeEEEEEEcCCCCcchhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEG-------LPPD-------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI   84 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   84 (170)
                      +|+++|+.++|||||+.++.........       ....       ....++......+.+++.++.++||||+.+|...
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e   83 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE   83 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence            6999999999999999999543222111       1100       1223666666678889999999999999999998


Q ss_pred             HHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848           85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP  138 (170)
Q Consensus        85 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~  138 (170)
                      ....++.+|++|+|+|+.+.-..+. ...+.....    .+.|.++++||+|..
T Consensus        84 ~~~al~~~D~avlvvda~~Gv~~~t-~~~~~~~~~----~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          84 IRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER----LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred             hhhhhcccCceEEEeeccCCccchh-HHHHHhhhh----ccccccccccccccc
Confidence            8889999999999999997755443 334444433    478999999999974

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=2.1e-15  Score=111.45  Aligned_cols=137  Identities=16%  Similarity=0.126  Sum_probs=90.4

Q ss_pred             hhhccCceeE-EEEEcCCCCChHHHHHHHHhhcccCCCC----------CCC--cccCCcceeEEEEEe-----------
Q 030848           10 KYIFTKTEFH-VLILGIDKAGKTTLLEKLKSVYSNVEGL----------PPD--RIVPTVGLNIGRIEV-----------   65 (170)
Q Consensus        10 ~~~~~~~~~~-i~vvG~~~~GKSsl~~~l~~~~~~~~~~----------~~~--~~~~~~~~~~~~~~~-----------   65 (170)
                      ..+.+..++| |+++|+.++|||||+.++..........          ...  ...-|+......+..           
T Consensus         9 ~lm~~~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~   88 (341)
T d1n0ua2           9 SLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIK   88 (341)
T ss_dssp             HHHHCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCS
T ss_pred             HHhcCcccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchh
Confidence            3444556675 9999999999999999996432221110          001  111233222222221           


Q ss_pred             -----cCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-
Q 030848           66 -----SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-  139 (170)
Q Consensus        66 -----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-  139 (170)
                           +...+.++||||+.++.......++-+|++|+|+|+.+.-..+.. ..+.....    .+.|+++++||+|... 
T Consensus        89 ~~~~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~-~~~~~a~~----~~~p~i~viNKiDr~~~  163 (341)
T d1n0ua2          89 QKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALG----ERIKPVVVINKVDRALL  163 (341)
T ss_dssp             SCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHH----TTCEEEEEEECHHHHHH
T ss_pred             ccccccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHH-HHHHHHHH----cCCCeEEEEECcccccc
Confidence                 345699999999999999888899999999999999987665543 33333333    4789999999999865 


Q ss_pred             --cCCHHHHHhHhC
Q 030848          140 --AVSADELARYLD  151 (170)
Q Consensus       140 --~~~~~~~~~~~~  151 (170)
                        ....+++.+.++
T Consensus       164 el~~~~~~~~~~l~  177 (341)
T d1n0ua2         164 ELQVSKEDLYQTFA  177 (341)
T ss_dssp             TSCCCHHHHHHHHH
T ss_pred             cHHhhHHHHHHHHc
Confidence              445555555443

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.62  E-value=7.9e-15  Score=104.82  Aligned_cols=123  Identities=9%  Similarity=0.034  Sum_probs=77.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCC-------cchhhHH
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-------GLRSIWE   86 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------~~~~~~~   86 (170)
                      .+..++|+++|.+|+|||||+|.|.+.  ...... .....|...........+..+.++||||-.       .......
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~--~~~~vs-~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~  105 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGE--RVVSIS-PFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIK  105 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTS--CCSCCC-SSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCC--Cceeec-CCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHH
Confidence            457899999999999999999999872  222111 122234445555667788999999999932       1111122


Q ss_pred             HH--hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCC-CCCcEEEEeeCCCccc
Q 030848           87 KY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDL-QGAPLLILANKQDLPD  139 (170)
Q Consensus        87 ~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~ii~v~nK~D~~~  139 (170)
                      .+  ....|++++|++++....-+.....+..+...++. -..++++++||+|...
T Consensus       106 ~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~  161 (257)
T d1h65a_         106 SFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  161 (257)
T ss_dssp             HHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             HHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCC
Confidence            22  24578999999887653223333333333322221 1257999999999875

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=1.9e-15  Score=114.39  Aligned_cols=117  Identities=15%  Similarity=0.223  Sum_probs=70.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcc----hhhH-HHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL----RSIW-EKYY   89 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~-~~~~   89 (170)
                      ...++|+++|.+|+|||||+|+|.+......+.......+++............++.+|||||-...    .... ...+
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            3579999999999999999999987433333332333333333222222334456999999993322    2111 2224


Q ss_pred             hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcc
Q 030848           90 EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLP  138 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~  138 (170)
                      ..+|.+|++.|..-.   +.....+..+..    .+.|+++|+||+|..
T Consensus       134 ~~~d~~l~~~~~~~~---~~d~~l~~~l~~----~~k~~~~V~nK~D~~  175 (400)
T d1tq4a_         134 YEYDFFIIISATRFK---KNDIDIAKAISM----MKKEFYFVRTKVDSD  175 (400)
T ss_dssp             GGCSEEEEEESSCCC---HHHHHHHHHHHH----TTCEEEEEECCHHHH
T ss_pred             hcceEEEEecCCCCC---HHHHHHHHHHHH----cCCCEEEEEeCcccc
Confidence            678888888764322   223334444433    368999999999963

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=3.8e-14  Score=95.54  Aligned_cols=140  Identities=19%  Similarity=0.177  Sum_probs=80.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhh--HHH-------H
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI--WEK-------Y   88 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--~~~-------~   88 (170)
                      -.|+++|.+|+|||||+|+|.+............   +..............+..+|++|.......  ...       .
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQT---TRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS   82 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSC---CSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeeccCCCc---eEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccc
Confidence            3589999999999999999987322222111111   111122334456677888899985433211  111       1


Q ss_pred             hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccC-CHH-HHHhHhCccccccceeEEEeee
Q 030848           89 YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAV-SAD-ELARYLDLKKLDERVCMFEAVS  166 (170)
Q Consensus        89 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~S  166 (170)
                      ...+++++++.|......  ....+...+..    ...|.++++||+|..... ... .......    .....+++++|
T Consensus        83 ~~~~~~~l~~~d~~~~~~--~~~~~~~~l~~----~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~----~~~~~~~~~vS  152 (179)
T d1egaa1          83 IGDVELVIFVVEGTRWTP--DDEMVLNKLRE----GKAPVILAVNKVDNVQEKADLLPHLQFLAS----QMNFLDIVPIS  152 (179)
T ss_dssp             CCCEEEEEEEEETTCCCH--HHHHHHHHHHS----SSSCEEEEEESTTTCCCHHHHHHHHHHHHT----TSCCSEEEECC
T ss_pred             hhhcceeEEEEecCccch--hHHHHHHHhhh----ccCceeeeeeeeeccchhhhhhhHhhhhhh----hcCCCCEEEEe
Confidence            235777788888765432  22333333332    356789999999976531 122 2222222    23345799999


Q ss_pred             ccCC
Q 030848          167 GYDG  170 (170)
Q Consensus       167 a~~g  170 (170)
                      |++|
T Consensus       153 A~~g  156 (179)
T d1egaa1         153 AETG  156 (179)
T ss_dssp             TTTT
T ss_pred             CcCC
Confidence            9987

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=1.3e-14  Score=98.22  Aligned_cols=152  Identities=16%  Similarity=0.102  Sum_probs=75.1

Q ss_pred             hhccCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC-CC-----cc--h
Q 030848           11 YIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG-QP-----GL--R   82 (170)
Q Consensus        11 ~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-~~-----~~--~   82 (170)
                      +......++|+++|.+|+|||||+|++.+...........   .+...........+......+.++ ..     ..  .
T Consensus        10 ~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (188)
T d1puia_          10 HLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTP---GRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQ   86 (188)
T ss_dssp             GSSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEEEETTEEEEECCCCC------CCHHHHH
T ss_pred             HCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccc---cceeeccceecccccceeeeecccccchhhhhhhhhh
Confidence            3345567999999999999999999997622111111111   111111111222223323223222 11     11  1


Q ss_pred             hhHHHHh---hccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCc-cccccc
Q 030848           83 SIWEKYY---EEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDL-KKLDER  158 (170)
Q Consensus        83 ~~~~~~~---~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~-~~~~~~  158 (170)
                      .......   .....++.+.+...... .....++.....    ...++++++||+|+.+........+.++. ......
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~  161 (188)
T d1puia_          87 RALGEYLEKRQSLQGLVVLMDIRHPLK-DLDQQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG  161 (188)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCS
T ss_pred             hhhhhhhhhhhheeEEEEeecccccch-hHHHHHHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCC
Confidence            1111111   23344555555554433 333444444433    36689999999999875444433333331 111233


Q ss_pred             eeEEEeeeccCC
Q 030848          159 VCMFEAVSGYDG  170 (170)
Q Consensus       159 ~~~~~~~Sa~~g  170 (170)
                      ..+++++||++|
T Consensus       162 ~~~~i~vSA~~g  173 (188)
T d1puia_         162 DVQVETFSSLKK  173 (188)
T ss_dssp             CEEEEECBTTTT
T ss_pred             CCcEEEEeCCCC
Confidence            578999999987

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=5.6e-13  Score=97.93  Aligned_cols=145  Identities=17%  Similarity=0.134  Sum_probs=79.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCC------CCCCcc----------------cCCcceeEEEEE-------
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG------LPPDRI----------------VPTVGLNIGRIE-------   64 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~------~~~~~~----------------~~~~~~~~~~~~-------   64 (170)
                      +.+.++|.|+|+||+|||||++++.........      ..+.+.                ............       
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg  130 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG  130 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhccccccccccccccccccc
Confidence            456899999999999999999999532221100      000000                000111111110       


Q ss_pred             -------------ecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEE
Q 030848           65 -------------VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL  131 (170)
Q Consensus        65 -------------~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v  131 (170)
                                   ..+..+.+++|.|.-.-..   .+...+|.+++|.++...+..+..+..+.++         +-++|
T Consensus       131 ~~~~~~~~~~~~~~~g~d~iliEtvG~gq~e~---~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~---------aDi~V  198 (327)
T d2p67a1         131 ASQRARELMLLCEAAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKGLMEV---------ADLIV  198 (327)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHHHHHH---------CSEEE
T ss_pred             chhhhhHHHHHHHhcCCCeEEEeeccccccch---hhhhccceEEEEecCCCchhhhhhchhhhcc---------ccEEE
Confidence                         0134688888888432221   2346789999999877665555444444443         22899


Q ss_pred             eeCCCccccCCHHHHHh----HhC--ccccccceeEEEeeeccCC
Q 030848          132 ANKQDLPDAVSADELAR----YLD--LKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       132 ~nK~D~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +||+|.+.........+    .+.  ......+.++++.|||++|
T Consensus       199 vNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g  243 (327)
T d2p67a1         199 INKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEK  243 (327)
T ss_dssp             ECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGT
T ss_pred             EEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCC
Confidence            99999877433222222    111  1233466789999999987

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.36  E-value=7.5e-14  Score=98.32  Aligned_cols=73  Identities=21%  Similarity=0.079  Sum_probs=42.8

Q ss_pred             eEEEEEEcCCCCcchhhHHH---Hh--hccCEEEEEEeCCCcccHHHHHHH---HHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           68 SKLVFWDLGGQPGLRSIWEK---YY--EEAHAVVFVIDAACPSRFEDSKTA---LEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        68 ~~~~i~D~~G~~~~~~~~~~---~~--~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      ..+.++|+||+.+.......   ..  ...+.+++++|+.....-+.....   .......   -..|.++++||+|+..
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~---~~~~~ivvinK~D~~~  171 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLLS  171 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGCC
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH---hCCCceeeeecccccc
Confidence            46999999998765432222   22  235688899988643332222111   1111111   3678999999999987


Q ss_pred             cCCH
Q 030848          140 AVSA  143 (170)
Q Consensus       140 ~~~~  143 (170)
                      ....
T Consensus       172 ~~~~  175 (244)
T d1yrba1         172 EEEK  175 (244)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5433

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.36  E-value=1.3e-11  Score=88.81  Aligned_cols=81  Identities=25%  Similarity=0.409  Sum_probs=58.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEec-----------------CeEEEEEEcCCC--
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-----------------NSKLVFWDLGGQ--   78 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~i~D~~G~--   78 (170)
                      ++|.+||-|+||||||+|++.+......++.+.+..|..+.    +.+.                 ...+.++|.||-  
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gv----v~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~   78 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGV----VPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVA   78 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSE----EECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCT
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEE----EecccHhHHHHHHhcCCCceeeeeEEEEEccccCC
Confidence            79999999999999999999986666666677777777776    3332                 235889999992  


Q ss_pred             -----CcchhhHHHHhhccCEEEEEEeCC
Q 030848           79 -----PGLRSIWEKYYEEAHAVVFVIDAA  102 (170)
Q Consensus        79 -----~~~~~~~~~~~~~~~~~i~v~d~~  102 (170)
                           +.+...+.+.+++||++++|+|+.
T Consensus        79 ga~~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          79 GASKGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             THHHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             CcccCCCccHHHHHHHHhccceEEEeecc
Confidence                 223445667789999999999873

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.26  E-value=2.6e-11  Score=88.77  Aligned_cols=145  Identities=16%  Similarity=0.149  Sum_probs=80.8

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCC----------CCC-------Ccc-c----CCcceeEEE---------
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG----------LPP-------DRI-V----PTVGLNIGR---------   62 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~----------~~~-------~~~-~----~~~~~~~~~---------   62 (170)
                      +.+.++|.++|+||+|||||++++.........          ...       ... .    ....+....         
T Consensus        48 ~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg  127 (323)
T d2qm8a1          48 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG  127 (323)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred             cCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccc
Confidence            456799999999999999999999542111000          000       000 0    000111110         


Q ss_pred             -----------EEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEE
Q 030848           63 -----------IEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLIL  131 (170)
Q Consensus        63 -----------~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v  131 (170)
                                 ++..+..+.++.|.|.-.-...   ...-+|..++|..+...+..+..+..+.++         .-+++
T Consensus       128 ~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k~gilE~---------aDi~v  195 (323)
T d2qm8a1         128 VAAKTRETMLLCEAAGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIKKGIFEL---------ADMIA  195 (323)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CCTTHHHH---------CSEEE
T ss_pred             hhHHHHHHHHhhccCCCCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhhhhHhhh---------hheee
Confidence                       0112568899999984333222   235689999999888765554433333333         23999


Q ss_pred             eeCCCccccCCHHH-----HHhHhC--ccccccceeEEEeeeccCC
Q 030848          132 ANKQDLPDAVSADE-----LARYLD--LKKLDERVCMFEAVSGYDG  170 (170)
Q Consensus       132 ~nK~D~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~Sa~~g  170 (170)
                      +||+|+++......     ....+.  ......+.++++.+||++|
T Consensus       196 vNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g  241 (323)
T d2qm8a1         196 VNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHG  241 (323)
T ss_dssp             EECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTT
T ss_pred             EeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCC
Confidence            99999876443222     122222  1223456788999999986

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.23  E-value=7.3e-12  Score=91.76  Aligned_cols=86  Identities=21%  Similarity=0.314  Sum_probs=49.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE--------------------ecCeEEEEEEcCC
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE--------------------VSNSKLVFWDLGG   77 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~i~D~~G   77 (170)
                      ++|+++|.|+||||||+|++.+....+.+..+.+..|..+......+                    .....+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            58999999999999999999886666666666666666665443222                    1225699999999


Q ss_pred             CC-------cchhhHHHHhhccCEEEEEEeCCC
Q 030848           78 QP-------GLRSIWEKYYEEAHAVVFVIDAAC  103 (170)
Q Consensus        78 ~~-------~~~~~~~~~~~~~~~~i~v~d~~~  103 (170)
                      --       .....+...++++|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            21       122222234578999999999863

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=8.4e-11  Score=85.14  Aligned_cols=68  Identities=24%  Similarity=0.288  Sum_probs=43.6

Q ss_pred             EEEEEEcCCCC--------c-----chhhHHHHhhccC-EEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeC
Q 030848           69 KLVFWDLGGQP--------G-----LRSIWEKYYEEAH-AVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANK  134 (170)
Q Consensus        69 ~~~i~D~~G~~--------~-----~~~~~~~~~~~~~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK  134 (170)
                      .+.++|+||-.        .     .......|+...+ ++++|.++..+-+......+...+    .....++++|+||
T Consensus       126 ~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~----~~~~~r~i~Vltk  201 (299)
T d2akab1         126 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV----DPQGQRTIGVITK  201 (299)
T ss_dssp             SEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHH----CTTCSSEEEEEEC
T ss_pred             CeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHh----CcCCCceeeEEec
Confidence            58999999921        1     1233455666666 455666776655555555555444    2245689999999


Q ss_pred             CCcccc
Q 030848          135 QDLPDA  140 (170)
Q Consensus       135 ~D~~~~  140 (170)
                      +|..+.
T Consensus       202 ~D~~~~  207 (299)
T d2akab1         202 LDLMDE  207 (299)
T ss_dssp             GGGSCT
T ss_pred             cccccc
Confidence            999874

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.18  E-value=1.9e-10  Score=83.35  Aligned_cols=85  Identities=21%  Similarity=0.318  Sum_probs=63.4

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhc-ccCCCCCCCcccCCcceeEEEEEec-----------------CeEEEEEEcC
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVY-SNVEGLPPDRIVPTVGLNIGRIEVS-----------------NSKLVFWDLG   76 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~i~D~~   76 (170)
                      ...++|.+||.|+||||||+|++.+.. ....+..+.+..|+.+.    +.+.                 ...+.++|.|
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~----v~v~d~r~~~l~~~~~~~~~~~~~i~~~Dva   83 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAK----VAVPDERFDWLCEAYKPKSRVPAFLTVFDIA   83 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEE----EEECCHHHHHHHHHHCCSEEECEEEEEECTG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEE----EeccccchhhhhhcccCCceecccceeeecc
Confidence            467999999999999999999998743 24555556566666554    3322                 2478999999


Q ss_pred             C-------CCcchhhHHHHhhccCEEEEEEeCCC
Q 030848           77 G-------QPGLRSIWEKYYEEAHAVVFVIDAAC  103 (170)
Q Consensus        77 G-------~~~~~~~~~~~~~~~~~~i~v~d~~~  103 (170)
                      |       ...+...+...++++|++|+|+|+.+
T Consensus        84 GLv~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          84 GLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             GGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccccccHHHHHHHhhccceeEEEEeccC
Confidence            8       23344566777899999999999865

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.14  E-value=1.8e-10  Score=83.66  Aligned_cols=69  Identities=22%  Similarity=0.264  Sum_probs=43.3

Q ss_pred             eEEEEEEcCCCCc-------------chhhHHHHhhccCEEEEEE-eCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEee
Q 030848           68 SKLVFWDLGGQPG-------------LRSIWEKYYEEAHAVVFVI-DAACPSRFEDSKTALEKVLRNEDLQGAPLLILAN  133 (170)
Q Consensus        68 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~n  133 (170)
                      ..+.++||||-..             .......|++.++.+++++ +...+..-+....+...+.    ....++++|+|
T Consensus       131 ~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~----~~~~r~i~Vit  206 (306)
T d1jwyb_         131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD----PEGKRTIGVIT  206 (306)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC----SSCSSEEEEEE
T ss_pred             CCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhC----cCCCeEEEEEe
Confidence            3689999999211             1245567788899766655 5443333333444444442    23568999999


Q ss_pred             CCCcccc
Q 030848          134 KQDLPDA  140 (170)
Q Consensus       134 K~D~~~~  140 (170)
                      |+|..+.
T Consensus       207 k~D~~~~  213 (306)
T d1jwyb_         207 KLDLMDK  213 (306)
T ss_dssp             CTTSSCS
T ss_pred             ccccccc
Confidence            9998764

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.57  E-value=5.3e-08  Score=69.36  Aligned_cols=58  Identities=26%  Similarity=0.326  Sum_probs=35.0

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCC
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG   77 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   77 (170)
                      ....++++|+|.|+||||||+|++.+......+.   ....|.....  + ..+..+.++||||
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~---~pG~Tr~~~~--i-~~~~~~~l~DTPG  166 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD---RPGITTSQQW--V-KVGKELELLDTPG  166 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC---------------CC--E-EETTTEEEEECCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceEEECC---cccccccceE--E-ECCCCeEEecCCC
Confidence            3467999999999999999999998732211111   1111111111  1 1245699999999

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=1.1e-06  Score=60.51  Aligned_cols=75  Identities=19%  Similarity=0.205  Sum_probs=42.0

Q ss_pred             EEEEEEcCCCCcchhhHHHH--------hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCcccc
Q 030848           69 KLVFWDLGGQPGLRSIWEKY--------YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDA  140 (170)
Q Consensus        69 ~~~i~D~~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~  140 (170)
                      ...++.+.|..........+        .-..+.++.|+|+............+..-+....      ++++||+|+.++
T Consensus        91 d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~AD------~ivlNK~Dl~~~  164 (222)
T d1nija1          91 DRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYAD------RILLTKTDVAGE  164 (222)
T ss_dssp             SEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCS------EEEEECTTTCSC
T ss_pred             ceeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHHhCC------cccccccccccH
Confidence            45788888865544433222        1235788999998765432222122222223332      899999999763


Q ss_pred             CCHHHHHhHhC
Q 030848          141 VSADELARYLD  151 (170)
Q Consensus       141 ~~~~~~~~~~~  151 (170)
                        .+.+.+.++
T Consensus       165 --~~~~~~~l~  173 (222)
T d1nija1         165 --AEKLHERLA  173 (222)
T ss_dssp             --THHHHHHHH
T ss_pred             --HHHHHHHHH
Confidence              344455444

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.30  E-value=3.8e-07  Score=62.12  Aligned_cols=23  Identities=39%  Similarity=0.572  Sum_probs=19.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .-.|+++|++||||||.+-.+..
T Consensus         6 ~~vi~lvGptGvGKTTTiaKLA~   28 (207)
T d1okkd2           6 GRVVLVVGVNGVGKTTTIAKLGR   28 (207)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34678999999999999988854

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=2e-07  Score=63.61  Aligned_cols=25  Identities=40%  Similarity=0.703  Sum_probs=20.7

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +...-|+++|++||||||.+-.+..
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~   31 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLAR   31 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3345688999999999999998854

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.27  E-value=5.3e-07  Score=61.43  Aligned_cols=113  Identities=18%  Similarity=0.213  Sum_probs=59.4

Q ss_pred             EEEEcCCCCChHHHHHHHHhhcccCCCC----CCCc-----------ccCCcceeEEEE-----------------EecC
Q 030848           20 VLILGIDKAGKTTLLEKLKSVYSNVEGL----PPDR-----------IVPTVGLNIGRI-----------------EVSN   67 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~~~~~~~~~----~~~~-----------~~~~~~~~~~~~-----------------~~~~   67 (170)
                      ++++|++|+||||.+-.|..........    ..+.           +....++.....                 ...+
T Consensus        13 i~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (207)
T d1ls1a2          13 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEA   92 (207)
T ss_dssp             EEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHhhcc
Confidence            6789999999999998885432211100    0010           011112222211                 1134


Q ss_pred             eEEEEEEcCCCCcc----hhhHHHH--hhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc
Q 030848           68 SKLVFWDLGGQPGL----RSIWEKY--YEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD  139 (170)
Q Consensus        68 ~~~~i~D~~G~~~~----~~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~  139 (170)
                      ..+.++||+|....    ...+..+  ....+-+++|.|+.....-   ......+.....    .-=+++||.|...
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~---~~~~~~f~~~~~----~~~~I~TKlDe~~  163 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEA---LSVARAFDEKVG----VTGLVLTKLDGDA  163 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHH---HHHHHHHHHHTC----CCEEEEECGGGCS
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhH---HHHHHHHHhhCC----CCeeEEeecCccc
Confidence            57999999994332    2222222  2356788999998765322   222222222111    1248899999644

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.27  E-value=3.5e-07  Score=62.90  Aligned_cols=21  Identities=24%  Similarity=0.493  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..+++|++|+|||||+|++..
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~  117 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINP  117 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHST
T ss_pred             eEEEECCCCCCHHHHHHhhcc
Confidence            568999999999999999965

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.25  E-value=2e-06  Score=58.58  Aligned_cols=26  Identities=27%  Similarity=0.517  Sum_probs=17.5

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .+....|+++|++|+||||.+-++..
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA~   34 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLAY   34 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            45556788999999999999988854

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.25  E-value=2.2e-07  Score=63.55  Aligned_cols=26  Identities=31%  Similarity=0.583  Sum_probs=21.4

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..+...|+++|++|+||||.+-.+..
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa   33 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAK   33 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34556789999999999999888854

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.19  E-value=1.7e-07  Score=64.71  Aligned_cols=21  Identities=24%  Similarity=0.479  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..+++|++|+|||||+|+|..
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~  119 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISP  119 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC
T ss_pred             eEEEECCCCccHHHHHHhhcc
Confidence            457999999999999999965

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.16  E-value=9.4e-07  Score=62.73  Aligned_cols=75  Identities=19%  Similarity=0.263  Sum_probs=54.0

Q ss_pred             hHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEE
Q 030848           84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFE  163 (170)
Q Consensus        84 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (170)
                      .....++.+|++|.|+|+.+|-+..+-  .+..+.     .+.|.++|+||+|+.+....++..+++.     ......+
T Consensus         8 ~i~~~i~~~DvIl~V~DaR~P~ss~~~--~l~~~~-----~~Kp~IlVlNK~DLv~~~~~~~w~~~f~-----~~~~~~i   75 (273)
T d1puja_           8 EVTEKLKLIDIVYELVDARIPMSSRNP--MIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFE-----NQGIRSL   75 (273)
T ss_dssp             HHHHHGGGCSEEEEEEETTSTTTTSCH--HHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHH-----TTTCCEE
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCCCCH--HHHHHH-----cCCCeEEEEECccCCchHHHHHHHHHHH-----hcCCccc
Confidence            345567999999999999988665431  222332     2568999999999988777777777776     3344577


Q ss_pred             eeeccCC
Q 030848          164 AVSGYDG  170 (170)
Q Consensus       164 ~~Sa~~g  170 (170)
                      .+|++++
T Consensus        76 ~isa~~~   82 (273)
T d1puja_          76 SINSVNG   82 (273)
T ss_dssp             ECCTTTC
T ss_pred             eeecccC
Confidence            7888764

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.04  E-value=1.3e-06  Score=57.56  Aligned_cols=25  Identities=32%  Similarity=0.504  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYS   42 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~   42 (170)
                      +||+++|++|+|||||++.+.+...
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l~   25 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcCC
Confidence            5899999999999999999976433

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.82  E-value=4.3e-06  Score=54.95  Aligned_cols=22  Identities=41%  Similarity=0.584  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -+|+|+|++|+|||||+++|..
T Consensus         8 K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999965

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.81  E-value=4.8e-06  Score=54.19  Aligned_cols=23  Identities=39%  Similarity=0.437  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .++|+++|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999954

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.79  E-value=7.3e-06  Score=53.43  Aligned_cols=25  Identities=28%  Similarity=0.489  Sum_probs=22.6

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .+.++|+++|++||||||+.+.|..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            4678999999999999999999965

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=0.00016  Score=50.98  Aligned_cols=63  Identities=25%  Similarity=0.301  Sum_probs=40.5

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEE---ecCeEEEEEEcCC
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE---VSNSKLVFWDLGG   77 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~D~~G   77 (170)
                      ..+-.-|.|+|+.++|||+|+|.+.+..... .........|.++-.....   ..+..+.++||.|
T Consensus        29 ~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f-~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG   94 (277)
T d1f5na2          29 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEG   94 (277)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECC
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHcCCCCCC-ccCCCCCCCCCceEEEEeeccCCCCceEEEEeccc
Confidence            3455678899999999999999998732221 1122222345554332222   3456799999999

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.73  E-value=9.4e-06  Score=53.47  Aligned_cols=22  Identities=32%  Similarity=0.598  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +||+++|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999854

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.67  E-value=1.8e-05  Score=54.20  Aligned_cols=74  Identities=15%  Similarity=0.148  Sum_probs=47.3

Q ss_pred             hccCEEEEEEeCCCccc-HHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           90 EEAHAVVFVIDAACPSR-FEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+.|.+++|+.+.+|.. ...+..++.....    .+.+.++|+||+||.++...+...+.....   ....+++.+||+
T Consensus         9 ANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~---~~~~~v~~vSa~   81 (225)
T d1u0la2           9 ANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIY---SGLYPIVKTSAK   81 (225)
T ss_dssp             ESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHH---TTTSCEEECCTT
T ss_pred             ccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCHHHHHHHHHhhccc---ccceeEEEeccc
Confidence            57799999999887654 3333333333322    578999999999997755444444333311   122568899998


Q ss_pred             CC
Q 030848          169 DG  170 (170)
Q Consensus       169 ~g  170 (170)
                      +|
T Consensus        82 ~~   83 (225)
T d1u0la2          82 TG   83 (225)
T ss_dssp             TC
T ss_pred             cc
Confidence            75

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=1.3e-05  Score=51.98  Aligned_cols=21  Identities=38%  Similarity=0.425  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -+.|+|.+|||||||++++..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            488999999999999999965

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.65  E-value=1.4e-05  Score=52.77  Aligned_cols=22  Identities=23%  Similarity=0.582  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ++|+++|+|||||||+.+.|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999854

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.63  E-value=1.7e-05  Score=52.73  Aligned_cols=24  Identities=33%  Similarity=0.392  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +.+||+++|+|||||||..+.|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999999954

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.63  E-value=1.9e-05  Score=52.66  Aligned_cols=25  Identities=24%  Similarity=0.246  Sum_probs=21.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .+...|+++|+|||||||+.++|..
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3446789999999999999999954

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.63  E-value=1.6e-05  Score=52.44  Aligned_cols=22  Identities=45%  Similarity=0.524  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +||+++|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999954

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.61  E-value=1.4e-05  Score=53.11  Aligned_cols=24  Identities=33%  Similarity=0.461  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..++|+++|++||||||+.+.|..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999854

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=1.9e-05  Score=51.93  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +||+++|++||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998844

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.59  E-value=2.3e-05  Score=52.28  Aligned_cols=25  Identities=20%  Similarity=0.359  Sum_probs=22.2

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ...+||+++|+|||||||+...|..
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHH
Confidence            3568999999999999999999955

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.56  E-value=2.1e-05  Score=50.10  Aligned_cols=20  Identities=25%  Similarity=0.478  Sum_probs=18.1

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 030848           20 VLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~   39 (170)
                      |+++|++||||||+.+.+..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77899999999999999854

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.54  E-value=2.5e-05  Score=51.49  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .++|+++|++||||||+.+.|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999954

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.50  E-value=2.8e-05  Score=50.28  Aligned_cols=20  Identities=30%  Similarity=0.446  Sum_probs=18.7

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 030848           20 VLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~   39 (170)
                      |+++|++||||||+.+.|..
T Consensus         5 I~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999975

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.49  E-value=2.9e-05  Score=53.32  Aligned_cols=75  Identities=17%  Similarity=0.067  Sum_probs=45.4

Q ss_pred             hccCEEEEEEeCCCccc-HHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccccCCHHHHHhHhCccccccceeEEEeeecc
Q 030848           90 EEAHAVVFVIDAACPSR-FEDSKTALEKVLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGY  168 (170)
Q Consensus        90 ~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  168 (170)
                      .+.|.+++|+++.+|.. ...+..++.....    .+.+.++|+||+||.+.....+..+.+. ........+++.+|++
T Consensus         9 ANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~-~~y~~~g~~v~~~Sa~   83 (231)
T d1t9ha2           9 CNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYA-EDYRNIGYDVYLTSSK   83 (231)
T ss_dssp             ECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHH-HHHHHHTCCEEECCHH
T ss_pred             cccCEEEEEEECCCCCCCHHHHHHHHHHHHH----cCCCEEEEEecccccccHHHHHHHHHHH-HHHhhccccceeeecC
Confidence            57889999999877643 3444333333322    5788999999999976433322222111 0111345678888887


Q ss_pred             C
Q 030848          169 D  169 (170)
Q Consensus       169 ~  169 (170)
                      +
T Consensus        84 ~   84 (231)
T d1t9ha2          84 D   84 (231)
T ss_dssp             H
T ss_pred             C
Confidence            5

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=3.5e-05  Score=49.28  Aligned_cols=21  Identities=29%  Similarity=0.494  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +|+++|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999965

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.43  E-value=7.3e-05  Score=49.39  Aligned_cols=33  Identities=30%  Similarity=0.365  Sum_probs=25.1

Q ss_pred             HHHHhhhccCceeEEEEEcCCCCChHHHHHHHHh
Q 030848            6 YGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus         6 ~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +...+ ......+-|+|.|++|||||||.+.|..
T Consensus        12 ~~~~~-~~~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          12 KTILA-IKTAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             HHHHT-SCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             HHHHh-ccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            44433 3445667799999999999999999954

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.42  E-value=4.7e-05  Score=52.76  Aligned_cols=26  Identities=23%  Similarity=0.379  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhccc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSN   43 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~   43 (170)
                      =.++++|++|||||||++.+.+...+
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl~~p   54 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERFYQP   54 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence            47899999999999999999775443

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.42  E-value=0.00011  Score=53.13  Aligned_cols=81  Identities=14%  Similarity=0.115  Sum_probs=42.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEE
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF   97 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   97 (170)
                      .+|+|.|++||||||+++.+....+....  .-....+.+..   +. ...++.-+...++..+.......++..-=.|+
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~~~~r--ivtiEd~~El~---l~-~~~~~~~~~~~~~~~~~~ll~~~lR~~pd~ii  240 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIPKEER--IISIEDTEEIV---FK-HHKNYTQLFFGGNITSADCLKSCLRMRPDRII  240 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSCTTCC--EEEEESSCCCC---CS-SCSSEEEEECBTTBCHHHHHHHHTTSCCSEEE
T ss_pred             CCEEEEeeccccchHHHHHHhhhcccccc--eeeccchhhhh---cc-cccccceeccccchhHHHHHHHHhccCCCccc
Confidence            46999999999999999999763322110  00011111110   00 11223344455555566666666654333344


Q ss_pred             EEeCCCc
Q 030848           98 VIDAACP  104 (170)
Q Consensus        98 v~d~~~~  104 (170)
                      |-.+.++
T Consensus       241 vgEiR~~  247 (323)
T d1g6oa_         241 LGELRSS  247 (323)
T ss_dssp             ESCCCST
T ss_pred             CCccCch
Confidence            5455544

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.41  E-value=5.8e-05  Score=49.00  Aligned_cols=25  Identities=20%  Similarity=0.453  Sum_probs=21.5

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ++.+.|.++|.+||||||+.+.|..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4557899999999999999988854

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=5e-05  Score=50.45  Aligned_cols=23  Identities=30%  Similarity=0.390  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .+.|+++|++||||||..++|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999854

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.40  E-value=0.0009  Score=42.98  Aligned_cols=36  Identities=28%  Similarity=0.241  Sum_probs=27.7

Q ss_pred             hHHHHhhhccCceeEEEEEcCCCCChHHHHHHHHhh
Q 030848            5 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus         5 ~~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      +++.+.....++..-|++.|+-|+|||||++.+...
T Consensus        21 la~~l~~~~~~~g~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          21 FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCeEEEEecCCCccHHHHHHHHHhh
Confidence            344444444567778999999999999999999764

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=3.6e-05  Score=53.31  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      =+++++|++|||||||++.+.+..
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            478999999999999999997743

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.34  E-value=5.9e-05  Score=48.88  Aligned_cols=20  Identities=40%  Similarity=0.599  Sum_probs=17.8

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 030848           20 VLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +.|+|.+|||||||++++..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            46999999999999999954

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=6.5e-05  Score=48.90  Aligned_cols=22  Identities=45%  Similarity=0.650  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .|+++|++|+|||||+..+...
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999999654

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.30  E-value=4.9e-05  Score=51.14  Aligned_cols=22  Identities=36%  Similarity=0.443  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .++++|+.|+|||||++.+.+.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            4789999999999999999773

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.30  E-value=5.9e-05  Score=48.90  Aligned_cols=22  Identities=23%  Similarity=0.471  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .||+++|.+||||||+.+.+..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999854

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=5.5e-05  Score=52.71  Aligned_cols=25  Identities=24%  Similarity=0.430  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYS   42 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~   42 (170)
                      =.++++|++|||||||++.+.+...
T Consensus        41 e~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          41 EVTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhcccC
Confidence            4789999999999999999977433

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.29  E-value=7e-05  Score=48.90  Aligned_cols=21  Identities=24%  Similarity=0.287  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -|++.|++||||||+++.|..
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999854

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.29  E-value=6.6e-05  Score=48.56  Aligned_cols=21  Identities=29%  Similarity=0.553  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +|+++|++||||||+.+.+..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999954

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.28  E-value=5.9e-05  Score=52.62  Aligned_cols=25  Identities=24%  Similarity=0.434  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhhcc
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSVYS   42 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~~~   42 (170)
                      =.++++|++|||||||++.+.+...
T Consensus        42 e~iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             CEEEEECCCCChHHHHHHHHhcccC
Confidence            3789999999999999999976433

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.27  E-value=5.6e-05  Score=51.94  Aligned_cols=22  Identities=32%  Similarity=0.539  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .++++|++|||||||++.+.+.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCcchhhHhccCC
Confidence            5789999999999999999763

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=9.3e-05  Score=48.48  Aligned_cols=25  Identities=24%  Similarity=0.327  Sum_probs=21.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ....-|+++|.+||||||+..++..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3455789999999999999999854

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.27  E-value=7.5e-05  Score=49.95  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .-|+++|.|||||||+.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999999964

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=0.00012  Score=47.16  Aligned_cols=24  Identities=13%  Similarity=0.414  Sum_probs=19.9

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..--++++|++||||||+.+.|..
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            344567899999999999999965

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.22  E-value=8.8e-05  Score=48.07  Aligned_cols=21  Identities=33%  Similarity=0.495  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -|+++|++||||||+.+.+..
T Consensus         6 iI~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999999965

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=0.0001  Score=48.75  Aligned_cols=22  Identities=45%  Similarity=0.677  Sum_probs=19.6

Q ss_pred             EEEEcCCCCChHHHHHHHHhhc
Q 030848           20 VLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      |+++|++||||+||++++....
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999997643

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=7.6e-05  Score=51.30  Aligned_cols=23  Identities=30%  Similarity=0.501  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      .++++|++|||||||++.+.+..
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            57899999999999999997643

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.21  E-value=0.00011  Score=48.28  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=19.3

Q ss_pred             EEEEcCCCCChHHHHHHHHhhc
Q 030848           20 VLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      |+++||+||||||+++.+....
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhhC
Confidence            6799999999999999997643

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.19  E-value=8.3e-05  Score=51.31  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      -++++|+.|+|||||++.+.+..
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            45789999999999999997743

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=0.00013  Score=48.52  Aligned_cols=24  Identities=38%  Similarity=0.355  Sum_probs=20.4

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +.-.|+++|++||||||+...|..
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            344688999999999999999955

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.18  E-value=0.00011  Score=47.49  Aligned_cols=21  Identities=29%  Similarity=0.471  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -|++.|++||||||+.+.|..
T Consensus         5 iI~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467889999999999999966

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.17  E-value=8.9e-05  Score=51.15  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      .++++|++|+|||||++.+.+..
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            57899999999999999997743

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.17  E-value=9.4e-05  Score=52.34  Aligned_cols=24  Identities=29%  Similarity=0.333  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYS   42 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~   42 (170)
                      .++++|+.|+|||||++.+.+...
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhCCCc
Confidence            688999999999999999977433

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=8.2e-05  Score=51.37  Aligned_cols=22  Identities=27%  Similarity=0.400  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      -+.++|++|||||||++.+.+.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            5789999999999999999773

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00013  Score=48.02  Aligned_cols=23  Identities=17%  Similarity=0.378  Sum_probs=20.0

Q ss_pred             EEEEcCCCCChHHHHHHHHhhcc
Q 030848           20 VLILGIDKAGKTTLLEKLKSVYS   42 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~~~~   42 (170)
                      |+++||+|+||+||++++....+
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~~~   28 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITKHP   28 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            78999999999999999976443

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=9.2e-05  Score=48.84  Aligned_cols=24  Identities=33%  Similarity=0.429  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ....|.++|.+||||||+.+.|..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999999954

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.14  E-value=0.00012  Score=48.64  Aligned_cols=22  Identities=27%  Similarity=0.336  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..|+++|+|||||||+.++|..
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4488999999999999999954

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.11  E-value=0.00011  Score=50.67  Aligned_cols=22  Identities=32%  Similarity=0.548  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .+.++|+.|+|||||++.+.+.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl   52 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGL   52 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5789999999999999999874

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.09  E-value=0.00017  Score=47.90  Aligned_cols=22  Identities=45%  Similarity=0.526  Sum_probs=19.4

Q ss_pred             EEEEcCCCCChHHHHHHHHhhc
Q 030848           20 VLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      |+++||+||||+|+++.+....
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999996543

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00019  Score=48.34  Aligned_cols=23  Identities=22%  Similarity=0.359  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .+-|++.|++|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999998844

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.08  E-value=7.6e-05  Score=51.16  Aligned_cols=23  Identities=39%  Similarity=0.468  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      -++++|+.|+|||||++.+.+..
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            47899999999999999998743

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.00032  Score=46.71  Aligned_cols=33  Identities=21%  Similarity=0.329  Sum_probs=25.5

Q ss_pred             HHHhhhccCceeEEEEEcCCCCChHHHHHHHHh
Q 030848            7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus         7 ~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ++.....++..-+++++|++|+|||+++..+..
T Consensus        33 ~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          33 RTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             HHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCeEEEecCCcccHHHHHHHHH
Confidence            344444455666899999999999999988854

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.07  E-value=0.00012  Score=50.67  Aligned_cols=22  Identities=36%  Similarity=0.557  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      -++++|+.|+|||||++.+.+.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999999774

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.07  E-value=0.00017  Score=46.92  Aligned_cols=20  Identities=25%  Similarity=0.449  Sum_probs=17.9

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 030848           20 VLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~   39 (170)
                      |+++|++||||||+.+.+..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999854

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.06  E-value=0.00037  Score=48.18  Aligned_cols=25  Identities=32%  Similarity=0.417  Sum_probs=21.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .+...|++.|++|+|||++++.+..
T Consensus        38 ~p~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          38 TPLVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHhh
Confidence            4555699999999999999999976

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.06  E-value=0.00019  Score=47.42  Aligned_cols=25  Identities=32%  Similarity=0.319  Sum_probs=21.5

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ++++-|+++|.+||||||+.+.|..
T Consensus         1 k~p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           1 KHPIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3568899999999999999998843

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.06  E-value=7.5e-05  Score=52.11  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      =+++++|++|||||||++.+.+.
T Consensus        45 e~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHHhc
Confidence            47899999999999999999664

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.04  E-value=0.00021  Score=48.24  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +.++|++-|++||||||....|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457889999999999999999954

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.03  E-value=0.00013  Score=50.32  Aligned_cols=22  Identities=32%  Similarity=0.434  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      -++++|+.|+|||||++.+.+.
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~   51 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTL   51 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5689999999999999999774

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.0002  Score=48.27  Aligned_cols=24  Identities=21%  Similarity=0.308  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcc
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYS   42 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~   42 (170)
                      -|+++||+||||+||++.+....+
T Consensus         4 livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCC
Confidence            368999999999999999976433

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.99  E-value=0.00033  Score=47.62  Aligned_cols=27  Identities=33%  Similarity=0.252  Sum_probs=22.0

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHh
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .+.+...+++.|++|+|||++++.+..
T Consensus        41 ~~~~~~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          41 KTGSMPHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             HHTCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             HcCCCCeEEEECCCCCcHHHHHHHHHH
Confidence            334444699999999999999999965

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.98  E-value=0.00016  Score=50.50  Aligned_cols=22  Identities=27%  Similarity=0.472  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .++++|+.|||||||++.+.+.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            5789999999999999999774

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00042  Score=48.53  Aligned_cols=33  Identities=21%  Similarity=0.279  Sum_probs=25.6

Q ss_pred             HHHhhhccCceeEEEEEcCCCCChHHHHHHHHh
Q 030848            7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus         7 ~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ++.....++..-++++||++|+|||+++..+..
T Consensus        29 ~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          29 RAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             HHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHHhcCccCCcEEECCCCCcHHHHHHHHHH
Confidence            444444455667899999999999999999854

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.97  E-value=0.0081  Score=41.39  Aligned_cols=71  Identities=14%  Similarity=0.163  Sum_probs=40.1

Q ss_pred             eEEEEEEcCCCCcchh-hHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcE-EEEeeCCCccc
Q 030848           68 SKLVFWDLGGQPGLRS-IWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL-LILANKQDLPD  139 (170)
Q Consensus        68 ~~~~i~D~~G~~~~~~-~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i-i~v~nK~D~~~  139 (170)
                      ..+.++|+|+...... ........+|.++++.+.+ ..++.........+.......+.++ -++.|+.+...
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~~-~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~  188 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN  188 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccchh-hhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC
Confidence            4699999997543322 2223335678888888653 4455544444444433222233333 47789987654

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.95  E-value=0.00037  Score=46.96  Aligned_cols=32  Identities=19%  Similarity=0.321  Sum_probs=27.0

Q ss_pred             HHhhhccCceeEEEEEcCCCCChHHHHHHHHh
Q 030848            8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus         8 ~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ....+..++..-|.++|.+||||||+.+.|..
T Consensus        15 ~r~~~~~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          15 ERTELRNQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             HHHHHHTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHhCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            44556677888999999999999999999854

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.95  E-value=0.00023  Score=46.50  Aligned_cols=22  Identities=36%  Similarity=0.709  Sum_probs=18.1

Q ss_pred             eEE-EEEcCCCCChHHHHHHHHh
Q 030848           18 FHV-LILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i-~vvG~~~~GKSsl~~~l~~   39 (170)
                      +|| ++.|.+||||||+++.+..
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            354 5679999999999999954

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.95  E-value=0.00017  Score=50.17  Aligned_cols=22  Identities=32%  Similarity=0.579  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      -++++|+.|+|||||++.+.+.
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHCC
Confidence            4689999999999999999774

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.00016  Score=49.72  Aligned_cols=22  Identities=32%  Similarity=0.587  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      -++++|+.|+|||||++.+.+.
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999999874

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.94  E-value=0.0003  Score=48.75  Aligned_cols=21  Identities=29%  Similarity=0.332  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -|++.|+||+||||+...+..
T Consensus        34 ~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999966

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.92  E-value=9.3e-05  Score=51.14  Aligned_cols=22  Identities=36%  Similarity=0.495  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .++++|++|+|||||++.+.+.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            6789999999999999999874

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.91  E-value=0.00025  Score=46.94  Aligned_cols=27  Identities=37%  Similarity=0.415  Sum_probs=23.7

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHh
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .+++.+-|++-|..||||||+++.|..
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            356778899999999999999999965

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.0062  Score=41.41  Aligned_cols=21  Identities=29%  Similarity=0.368  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .+++.|++|+|||+++..+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            388999999999999998854

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.87  E-value=0.0005  Score=46.68  Aligned_cols=32  Identities=28%  Similarity=0.293  Sum_probs=23.9

Q ss_pred             HHhhhccCceeEEEEEcCCCCChHHHHHHHHh
Q 030848            8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus         8 ~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +.++..+.....+++.|++|+||||++..+..
T Consensus        24 l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          24 LKKTLKSANLPHMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             HHHHTTCTTCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHcCCCCeEEEECCCCCChHHHHHHHHH
Confidence            33344444445689999999999999999965

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.87  E-value=0.00049  Score=46.59  Aligned_cols=34  Identities=26%  Similarity=0.218  Sum_probs=25.2

Q ss_pred             HHHHhhhccCceeEEEEEcCCCCChHHHHHHHHh
Q 030848            6 YGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus         6 ~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..+..+..+.....+++.|++|+||||+++.+..
T Consensus        25 ~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          25 DRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             HHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHH
Confidence            3444444444445699999999999999998854

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.00053  Score=48.94  Aligned_cols=31  Identities=19%  Similarity=0.161  Sum_probs=24.5

Q ss_pred             HhhhccCceeEEEEEcCCCCChHHHHHHHHh
Q 030848            9 WKYIFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus         9 ~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +.....+..+-|+|.|++||||||+.+.|..
T Consensus        72 l~~~~~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          72 LGTNGQRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             HTCC-CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             hcccCCCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            3344456778999999999999999998854

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.81  E-value=0.00034  Score=47.79  Aligned_cols=23  Identities=35%  Similarity=0.427  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .-.+++.||||+||||+++.+.+
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999976

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.77  E-value=0.00043  Score=47.21  Aligned_cols=24  Identities=42%  Similarity=0.407  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ....+++.||||+||||+++.+..
T Consensus        34 ~~~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          34 VLDHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CCCCEEEESSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHh
Confidence            345699999999999999999976

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.71  E-value=0.00073  Score=45.68  Aligned_cols=27  Identities=26%  Similarity=0.246  Sum_probs=22.0

Q ss_pred             ccCceeEEEEEcCCCCChHHHHHHHHh
Q 030848           13 FTKTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        13 ~~~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .+.....+++.|++|+||||++..+..
T Consensus        31 ~~~~~~~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          31 DEGKLPHLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             HTTCCCCEEEECSSSSSHHHHHHHHHH
T ss_pred             HcCCCCeEEEECCCCCChhHHHHHHHH
Confidence            334444689999999999999999975

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.53  E-value=0.00072  Score=46.37  Aligned_cols=22  Identities=23%  Similarity=0.235  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -.+++.||+|+||||++..+..
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~   74 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQ   74 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999976

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.52  E-value=0.0014  Score=45.28  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      --+++.|++|+|||++++.+..
T Consensus        43 ~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHH
Confidence            4599999999999999999976

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.51  E-value=0.0013  Score=45.61  Aligned_cols=24  Identities=21%  Similarity=0.315  Sum_probs=20.9

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..-.+++.|++|+|||++++++..
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceeEEecCCCCCchHHHHHHHH
Confidence            344699999999999999999976

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.00077  Score=45.15  Aligned_cols=21  Identities=33%  Similarity=0.362  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -|++.|++||||+|....|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467889999999999999954

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.50  E-value=0.001  Score=45.76  Aligned_cols=22  Identities=23%  Similarity=0.446  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -.++|.|++|+|||||++.+..
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Confidence            4578999999999999998864

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.49  E-value=0.00076  Score=48.13  Aligned_cols=24  Identities=29%  Similarity=0.499  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +.-.++++||||+|||.|.+++..
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhh
Confidence            345689999999999999999976

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.48  E-value=0.001  Score=45.74  Aligned_cols=25  Identities=32%  Similarity=0.315  Sum_probs=21.5

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHhh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      ..-.+++.|++|+|||++++.+...
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            4457999999999999999999763

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.41  E-value=0.0016  Score=45.94  Aligned_cols=24  Identities=17%  Similarity=0.290  Sum_probs=20.7

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHH
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKL   37 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l   37 (170)
                      ++..+-|++-|++|||||||...+
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l   47 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQI   47 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHH
Confidence            455688999999999999998776

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.035  Score=36.72  Aligned_cols=21  Identities=24%  Similarity=0.374  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -+++.|++|+||||++..+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            499999999999999998865

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.31  E-value=0.00098  Score=49.96  Aligned_cols=21  Identities=29%  Similarity=0.591  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +|+++||+|+|||-|.+++..
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999965

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.30  E-value=0.0015  Score=44.64  Aligned_cols=21  Identities=33%  Similarity=0.457  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .+++.|++|+||||++..+..
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999865

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.25  E-value=0.0015  Score=43.34  Aligned_cols=21  Identities=52%  Similarity=0.732  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998864

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.0014  Score=43.79  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +-|+|+|..||||||+.+.+..
T Consensus         4 ~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            3578999999999999998843

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.0013  Score=45.62  Aligned_cols=22  Identities=32%  Similarity=0.413  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -.+++.|++|+|||++++.+..
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHH
Confidence            4599999999999999999976

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.21  E-value=0.0023  Score=44.11  Aligned_cols=21  Identities=29%  Similarity=0.090  Sum_probs=17.6

Q ss_pred             EEEEcCCCCChHHHHHHHHhh
Q 030848           20 VLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      +++.|++|+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            455699999999999999653

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.19  E-value=0.0016  Score=43.40  Aligned_cols=21  Identities=29%  Similarity=0.303  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHH
Q 030848           18 FHVLILGIDKAGKTTLLEKLK   38 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~   38 (170)
                      +-|+++|..||||||+.+.+.
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            458899999999999999884

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.17  E-value=0.0017  Score=47.82  Aligned_cols=32  Identities=22%  Similarity=0.433  Sum_probs=23.5

Q ss_pred             HHhhhccCceeEEEEEcCCCCChHHHHHHHHh
Q 030848            8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus         8 ~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +.....++..-++++||++|+|||+++..+..
T Consensus        34 ~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          34 VIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             HHHHHHCSSCCCCEEEECTTSCHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCCeEECCCCCCHHHHHHHHHH
Confidence            33333445556789999999999999977743

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.15  E-value=0.001  Score=46.90  Aligned_cols=24  Identities=17%  Similarity=0.245  Sum_probs=16.9

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +..-|+|.|++||||||+.++|..
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHH
Confidence            334699999999999999998743

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.13  E-value=0.052  Score=37.59  Aligned_cols=71  Identities=11%  Similarity=0.152  Sum_probs=37.4

Q ss_pred             eEEEEEEcCCCCcchhh-HHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcE-EEEeeCCCccc
Q 030848           68 SKLVFWDLGGQPGLRSI-WEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPL-LILANKQDLPD  139 (170)
Q Consensus        68 ~~~~i~D~~G~~~~~~~-~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i-i~v~nK~D~~~  139 (170)
                      ..+.++|+|+....... .......++.++++...+ ..++.........+.......+.++ -++.|+.+...
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~~-~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~  191 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR  191 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccchh-HHHHHHHHHHHHHHHhhhhcccccccceeehhhcchh
Confidence            47899999975433222 122224567777666443 3344444444444432222234444 37889887543

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.02  E-value=0.003  Score=43.92  Aligned_cols=23  Identities=30%  Similarity=0.356  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .--|++.|++|+|||++++++..
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHH
Confidence            34599999999999999999976

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.86  E-value=0.0025  Score=42.43  Aligned_cols=20  Identities=35%  Similarity=0.508  Sum_probs=17.9

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 030848           20 VLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~   39 (170)
                      |++-|..||||||+++.+..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999999854

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.00041  Score=45.61  Aligned_cols=19  Identities=26%  Similarity=0.382  Sum_probs=16.8

Q ss_pred             EEEcCCCCChHHHHHHHHh
Q 030848           21 LILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        21 ~vvG~~~~GKSsl~~~l~~   39 (170)
                      +++|+.||||||++.+|..
T Consensus        28 vi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            5789999999999999953

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.77  E-value=0.0027  Score=45.67  Aligned_cols=26  Identities=23%  Similarity=0.235  Sum_probs=23.2

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +++.++|.|-|.-|+||||+++.+..
T Consensus         2 ~m~~lrI~IEG~iGsGKSTl~~~L~~   27 (331)
T d1osna_           2 KMGVLRIYLDGAYGIGKTTAAEEFLH   27 (331)
T ss_dssp             CEEEEEEEEEESSSSCTTHHHHHHHH
T ss_pred             CccceEEEEECCCCCCHHHHHHHHHH
Confidence            35678999999999999999999976

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.76  E-value=0.011  Score=43.58  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=25.4

Q ss_pred             HhhhccCceeEEEEEcCCCCChHHHHHHHHhh
Q 030848            9 WKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus         9 ~~~~~~~~~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      +......+.=-|++.|++||||||.+..+...
T Consensus       150 l~~l~~~~~GliLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         150 FRRLIKRPHGIILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             HHHHHTSSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             HHHHHhhhhceEEEEcCCCCCccHHHHHHhhh
Confidence            34444556667999999999999999999764

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.71  E-value=0.0092  Score=41.57  Aligned_cols=25  Identities=20%  Similarity=0.363  Sum_probs=21.0

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ....-|+++|.+|+|||||...+.+
T Consensus        42 ~~~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          42 LDSFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            3445688999999999999999865

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0032  Score=41.44  Aligned_cols=21  Identities=24%  Similarity=0.301  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -+.+.|++|+|||+|+..+..
T Consensus        25 v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            468999999999999988864

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.0044  Score=44.18  Aligned_cols=26  Identities=27%  Similarity=0.252  Sum_probs=21.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      ++.-.++++||+|+|||.|...+...
T Consensus        50 ~p~~~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          50 KPVGSFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             SCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCcchhHHHHHHHHhh
Confidence            34457999999999999999999653

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0022  Score=43.38  Aligned_cols=21  Identities=38%  Similarity=0.455  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .|+|-|+.||||||+++.|..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999965

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.61  E-value=0.0037  Score=45.54  Aligned_cols=26  Identities=23%  Similarity=0.433  Sum_probs=22.6

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +.+.-+++++||+|+|||-+.+++..
T Consensus        65 ~~p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          65 ELSKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             TCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCcceeeeCCCCccHHHHHHHHHh
Confidence            44567799999999999999999965

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.55  E-value=0.0025  Score=44.79  Aligned_cols=18  Identities=28%  Similarity=0.676  Sum_probs=16.6

Q ss_pred             EEEcCCCCChHHHHHHHH
Q 030848           21 LILGIDKAGKTTLLEKLK   38 (170)
Q Consensus        21 ~vvG~~~~GKSsl~~~l~   38 (170)
                      +++|+.|||||+++.++.
T Consensus        28 vlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEECCTTTCSTHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            689999999999999884

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.47  E-value=0.0042  Score=45.19  Aligned_cols=22  Identities=36%  Similarity=0.244  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      --+++.||||+|||+|.+.+.+
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999966

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.0044  Score=41.96  Aligned_cols=21  Identities=29%  Similarity=0.352  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -|+|-|.-||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            588999999999999999965

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=95.41  E-value=0.053  Score=37.37  Aligned_cols=74  Identities=18%  Similarity=0.139  Sum_probs=41.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV   98 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   98 (170)
                      -+.+.|++|+|||+|+-.+......                      ++..+.++|+-+.-........-+ +.|-++ +
T Consensus        56 itei~G~~gsGKTtl~l~~~~~~q~----------------------~g~~~vyidtE~~~~~~~a~~~Gv-d~d~v~-~  111 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIAAAQR----------------------EGKTCAFIDAEHALDPIYARKLGV-DIDNLL-C  111 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH----------------------TTCCEEEEESSCCCCHHHHHHTTC-CGGGCE-E
T ss_pred             EEEEecCCCcHHHHHHHHHHHHHHc----------------------CCCEEEEEccccccCHHHHHHhCC-CHHHEE-E
Confidence            4579999999999998777542211                      123456788888543322211112 223333 3


Q ss_pred             EeCCCcccHHHHHHHHHHHHc
Q 030848           99 IDAACPSRFEDSKTALEKVLR  119 (170)
Q Consensus        99 ~d~~~~~~~~~~~~~~~~~~~  119 (170)
                      +.   +.+.++..++...+..
T Consensus       112 ~~---~~~~E~~~~~i~~l~~  129 (263)
T d1u94a1         112 SQ---PDTGEQALEICDALAR  129 (263)
T ss_dssp             EC---CSSHHHHHHHHHHHHH
T ss_pred             ec---CCCHHHHHHHHHHHHh
Confidence            43   4456666666666654

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.005  Score=41.16  Aligned_cols=20  Identities=40%  Similarity=0.677  Sum_probs=17.3

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 030848           20 VLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~   39 (170)
                      |++.|..||||||+++.+..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999888844

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.37  E-value=0.0054  Score=39.94  Aligned_cols=22  Identities=32%  Similarity=0.344  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .-|++.|++|+||||+.-.+..
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHH
Confidence            4589999999999999988754

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.37  E-value=0.003  Score=45.19  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHhh
Q 030848           19 HVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      .++++|++|+|||++.+++...
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~i   51 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAAL   51 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHh
Confidence            6899999999999999999654

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.23  E-value=0.0045  Score=45.22  Aligned_cols=21  Identities=24%  Similarity=0.653  Sum_probs=17.8

Q ss_pred             eeEEEEEcCCCCChHHHHHHHH
Q 030848           17 EFHVLILGIDKAGKTTLLEKLK   38 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~   38 (170)
                      .++ +++|+.|+|||+++.+|.
T Consensus        26 ~l~-~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          26 NFT-SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             SEE-EEECSTTSSHHHHHHHHH
T ss_pred             CEE-EEECCCCCCHHHHHHHHH
Confidence            344 588999999999999984

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.23  E-value=0.0053  Score=41.30  Aligned_cols=21  Identities=24%  Similarity=0.309  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -+.+.|++|+|||+|...+..
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            468999999999999988854

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.16  E-value=0.0059  Score=39.75  Aligned_cols=22  Identities=27%  Similarity=0.295  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .-+++.|++|+||||+.-.+..
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4589999999999999988854

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.06  E-value=0.15  Score=35.16  Aligned_cols=74  Identities=16%  Similarity=0.143  Sum_probs=42.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV   98 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   98 (170)
                      -..+.|++++|||+|+-.+......                      .+..+.++|+.+.-.........+. .+-+ ++
T Consensus        62 i~e~~G~~~~GKT~l~l~~~~~~q~----------------------~g~~~vyIDtE~~~~~e~a~~~GvD-~d~i-l~  117 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAVANAQA----------------------AGGVAAFIDAEHALDPDYAKKLGVD-TDSL-LV  117 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHHH----------------------TTCEEEEEESSCCCCHHHHHHHTCC-GGGC-EE
T ss_pred             eEEEecCCCcHHHHHHHHHHHHHhc----------------------CCCEEEEEECCccCCHHHHHHhCCC-HHHe-EE
Confidence            3578999999999998766541111                      2234567799984433322222222 3333 34


Q ss_pred             EeCCCcccHHHHHHHHHHHHc
Q 030848           99 IDAACPSRFEDSKTALEKVLR  119 (170)
Q Consensus        99 ~d~~~~~~~~~~~~~~~~~~~  119 (170)
                      +.   +.+.++..+....+..
T Consensus       118 ~~---~~~~E~~~~~~~~l~~  135 (269)
T d1mo6a1         118 SQ---PDTGEQALEIADMLIR  135 (269)
T ss_dssp             EC---CSSHHHHHHHHHHHHH
T ss_pred             ec---CCCHHHHHHHHHHHHh
Confidence            43   3456666666666654

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.06  E-value=0.0067  Score=41.08  Aligned_cols=21  Identities=29%  Similarity=0.283  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -++|.|++|+|||+|.-.+..
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~   58 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAV   58 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            468999999999999887754

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.05  E-value=0.0064  Score=41.17  Aligned_cols=21  Identities=24%  Similarity=0.488  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .|+++|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999854

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.98  E-value=0.0081  Score=43.10  Aligned_cols=24  Identities=25%  Similarity=0.263  Sum_probs=21.8

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..++|.|-|.-|+||||+++.+..
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHS
T ss_pred             ceEEEEEECCccCCHHHHHHHHHH
Confidence            457999999999999999999976

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.97  E-value=0.0073  Score=40.77  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      --+++.|++|+|||+|+..+..
T Consensus        27 sl~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            3468999999999999988854

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.94  E-value=0.0084  Score=42.78  Aligned_cols=21  Identities=33%  Similarity=0.570  Sum_probs=18.1

Q ss_pred             EEEEcCCCCChHHHHHHHHhh
Q 030848           20 VLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      ++++|+||+|||.+.+.+...
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            556899999999999999763

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.87  E-value=0.0092  Score=38.52  Aligned_cols=23  Identities=30%  Similarity=0.270  Sum_probs=19.5

Q ss_pred             eeEEEEEcCCCCChHHHHHHHHh
Q 030848           17 EFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..-+++.|++|+||||+.-.+..
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHH
Confidence            35689999999999999877754

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.86  E-value=0.008  Score=43.06  Aligned_cols=24  Identities=38%  Similarity=0.328  Sum_probs=21.1

Q ss_pred             ceeEEEEEcCCCCChHHHHHHHHh
Q 030848           16 TEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        16 ~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ..++|.|-|.-|+||||+++.+..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            346899999999999999999954

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.73  E-value=0.0093  Score=40.04  Aligned_cols=21  Identities=19%  Similarity=0.226  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -++|.|++|+|||+|+..+..
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            468999999999999988853

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.47  E-value=0.011  Score=39.47  Aligned_cols=20  Identities=45%  Similarity=0.637  Sum_probs=18.1

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 030848           20 VLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~   39 (170)
                      |++-|.-||||||+++.|..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999998854

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.34  E-value=0.013  Score=39.51  Aligned_cols=21  Identities=29%  Similarity=0.221  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      -++|.|++|+|||+|...+..
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999988864

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.34  E-value=0.014  Score=39.06  Aligned_cols=20  Identities=35%  Similarity=0.507  Sum_probs=18.7

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 030848           20 VLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +.+.|++|+|||-|++++..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~   58 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGN   58 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            88999999999999999976

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=94.32  E-value=0.091  Score=36.25  Aligned_cols=74  Identities=19%  Similarity=0.163  Sum_probs=41.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHhhcccCCCCCCCcccCCcceeEEEEEecCeEEEEEEcCCCCcchhhHHHHhhccCEEEEE
Q 030848           19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV   98 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   98 (170)
                      -.-+.|++++|||+|+-.+......                      .+..+.++|+.+.-.... ...+--+.|=+ ++
T Consensus        59 itei~G~~~sGKT~l~l~~~~~aqk----------------------~g~~v~yiDtE~~~~~~~-a~~~Gvd~d~i-~~  114 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVAQAQK----------------------AGGTCAFIDAEHALDPVY-ARALGVNTDEL-LV  114 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHH----------------------TTCCEEEEESSCCCCHHH-HHHTTCCGGGC-EE
T ss_pred             EEEEecCCccchHHHHHHHHHHHHh----------------------CCCEEEEEECCccCCHHH-HHHhCCCchhE-EE
Confidence            3568999999999999887552211                      123456789887433322 22221223322 33


Q ss_pred             EeCCCcccHHHHHHHHHHHHc
Q 030848           99 IDAACPSRFEDSKTALEKVLR  119 (170)
Q Consensus        99 ~d~~~~~~~~~~~~~~~~~~~  119 (170)
                      +.   +.+.++..+....+..
T Consensus       115 ~~---~~~~E~~~~~~~~l~~  132 (268)
T d1xp8a1         115 SQ---PDNGEQALEIMELLVR  132 (268)
T ss_dssp             EC---CSSHHHHHHHHHHHHT
T ss_pred             Ec---CCCHHHHHHHHHHHHh
Confidence            43   4456666666666654

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.26  E-value=0.01  Score=39.40  Aligned_cols=23  Identities=13%  Similarity=0.128  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHhh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      --+++.|++++|||.|++++...
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHHH
Confidence            45889999999999999998653

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.15  E-value=0.017  Score=41.01  Aligned_cols=26  Identities=31%  Similarity=0.358  Sum_probs=21.5

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSV   40 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~   40 (170)
                      ++.-.++++|++|+|||.+.+.+...
T Consensus        51 kp~~~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          51 RPIGSFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             SCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCcchHHHHHHHHHHH
Confidence            44447889999999999999999653

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.99  E-value=0.021  Score=34.55  Aligned_cols=26  Identities=19%  Similarity=0.172  Sum_probs=23.1

Q ss_pred             cCceeEEEEEcCCCCChHHHHHHHHh
Q 030848           14 TKTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        14 ~~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .++-+.|.+.|..|+|||++.+.+..
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHHH
Confidence            46778999999999999999999954

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.96  E-value=0.017  Score=39.78  Aligned_cols=19  Identities=16%  Similarity=0.349  Sum_probs=16.8

Q ss_pred             EEEEcCCCCChHHHHHHHH
Q 030848           20 VLILGIDKAGKTTLLEKLK   38 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~   38 (170)
                      +++.|++|+|||+|+..+.
T Consensus        38 ~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5799999999999987775

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.87  E-value=0.011  Score=41.13  Aligned_cols=19  Identities=32%  Similarity=0.443  Sum_probs=15.3

Q ss_pred             EEEEEcCCCCChHHH-HHHH
Q 030848           19 HVLILGIDKAGKTTL-LEKL   37 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl-~~~l   37 (170)
                      .++|+|++|+||||. ++++
T Consensus        16 ~~lI~g~aGTGKTt~l~~rv   35 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITNKI   35 (306)
T ss_dssp             EEEECCCTTSCHHHHHHHHH
T ss_pred             CEEEEeeCCccHHHHHHHHH
Confidence            478999999999975 5554

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.87  E-value=0.035  Score=38.40  Aligned_cols=27  Identities=19%  Similarity=0.326  Sum_probs=21.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHhhc
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKSVY   41 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~~~   41 (170)
                      .+.--+.+.|++++|||+|++.+....
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            345567889999999999999997643

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.82  E-value=0.019  Score=38.15  Aligned_cols=19  Identities=26%  Similarity=0.396  Sum_probs=16.2

Q ss_pred             EEEEEcCCCCChHHHHHHH
Q 030848           19 HVLILGIDKAGKTTLLEKL   37 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l   37 (170)
                      -+.+.|++|+|||+|...+
T Consensus        28 ~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHH
Confidence            4678899999999998665

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.78  E-value=0.43  Score=31.24  Aligned_cols=77  Identities=12%  Similarity=0.085  Sum_probs=48.3

Q ss_pred             CeEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEE-EEeeCCCccccCCHH-
Q 030848           67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLL-ILANKQDLPDAVSAD-  144 (170)
Q Consensus        67 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii-~v~nK~D~~~~~~~~-  144 (170)
                      ...+.++|+|+.....  ....+..+|.++++...+ ..+...+......+.+    .+.|++ +++||.|..+..... 
T Consensus       111 ~~d~IiiD~~~~~~~~--~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~----~~~~~~giv~N~~~~~~~~~~~~  183 (237)
T d1g3qa_         111 KFDFILIDCPAGLQLD--AMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK----AGLAILGFVLNRYGRSDRDIPPE  183 (237)
T ss_dssp             GCSEEEEECCSSSSHH--HHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH----TTCEEEEEEEEEETSCTTCCCHH
T ss_pred             cCCEEEEccccccccc--chhhhhhhhccccccccc-ceecchhhHHHHHHhh----hhhhhhhhhhcccccccchhhhH
Confidence            3579999999876443  333456799999999765 3445555555544433    355655 889999876543333 


Q ss_pred             HHHhHh
Q 030848          145 ELARYL  150 (170)
Q Consensus       145 ~~~~~~  150 (170)
                      ..++..
T Consensus       184 ~~~~~~  189 (237)
T d1g3qa_         184 AAEDVM  189 (237)
T ss_dssp             HHHHHH
T ss_pred             HHHhhc
Confidence            334333

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.47  E-value=0.021  Score=41.86  Aligned_cols=20  Identities=40%  Similarity=0.695  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCChHHHHHHHH
Q 030848           19 HVLILGIDKAGKTTLLEKLK   38 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~   38 (170)
                      .++|+|.+|+|||+++..+.
T Consensus        52 H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHH
T ss_pred             eEEEEeCCCCcHHHHHHHHH
Confidence            48999999999999987763

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.35  E-value=0.018  Score=40.38  Aligned_cols=19  Identities=26%  Similarity=0.452  Sum_probs=15.4

Q ss_pred             EEEEEcCCCCChHHH-HHHH
Q 030848           19 HVLILGIDKAGKTTL-LEKL   37 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl-~~~l   37 (170)
                      .++|.|++||||||. ++++
T Consensus        26 ~~lV~g~aGSGKTt~l~~ri   45 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTHRI   45 (318)
T ss_dssp             CEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHH
Confidence            488999999999976 4554

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.10  E-value=0.028  Score=38.47  Aligned_cols=20  Identities=25%  Similarity=0.272  Sum_probs=17.1

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 030848           20 VLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~   39 (170)
                      .++.|++|+|||+|+-.+..
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            56899999999999877743

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.06  E-value=0.033  Score=38.98  Aligned_cols=22  Identities=41%  Similarity=0.487  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      =|++++|++|+|||+|+..+..
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHH
Confidence            3899999999999999988864

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.43  E-value=0.044  Score=37.35  Aligned_cols=25  Identities=28%  Similarity=0.336  Sum_probs=21.1

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +....|++.|++|+||+.+.+.+..
T Consensus        21 ~~~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          21 CAECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             TCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCcCHHHHHHHHHH
Confidence            4556789999999999999999854

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=91.71  E-value=0.055  Score=39.04  Aligned_cols=19  Identities=42%  Similarity=0.420  Sum_probs=16.2

Q ss_pred             EEEEEcCCCCChHHHHHHH
Q 030848           19 HVLILGIDKAGKTTLLEKL   37 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l   37 (170)
                      -.++.|++|+|||+.+..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            5789999999999988654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.61  E-value=0.056  Score=36.56  Aligned_cols=18  Identities=28%  Similarity=0.552  Sum_probs=17.0

Q ss_pred             EEEEcCCCCChHHHHHHH
Q 030848           20 VLILGIDKAGKTTLLEKL   37 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l   37 (170)
                      +++.|+..+|||++++.+
T Consensus        44 ~iiTGpN~~GKSt~lk~i   61 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQT   61 (234)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHH
Confidence            689999999999999998

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.31  E-value=0.062  Score=36.10  Aligned_cols=18  Identities=50%  Similarity=0.698  Sum_probs=17.0

Q ss_pred             EEEEcCCCCChHHHHHHH
Q 030848           20 VLILGIDKAGKTTLLEKL   37 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l   37 (170)
                      +++.|+..+|||++++.+
T Consensus        38 ~iiTGpN~~GKSt~lk~i   55 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQT   55 (224)
T ss_dssp             EEEESCSSSSHHHHHHHH
T ss_pred             EEEECCCccccchhhhhh
Confidence            689999999999999988

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.59  E-value=1.4  Score=28.48  Aligned_cols=25  Identities=20%  Similarity=0.169  Sum_probs=21.9

Q ss_pred             CceeEEEEEcCCCCChHHHHHHHHh
Q 030848           15 KTEFHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        15 ~~~~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      +....+++.|++|+||+++...+..
T Consensus        13 ~~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          13 SEGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             CSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999998865

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.00  E-value=0.1  Score=33.80  Aligned_cols=20  Identities=30%  Similarity=0.468  Sum_probs=18.0

Q ss_pred             EEEEcCCCCChHHHHHHHHh
Q 030848           20 VLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        20 i~vvG~~~~GKSsl~~~l~~   39 (170)
                      ++|+|...||||.+...+..
T Consensus         2 iLVtGGarSGKS~~AE~l~~   21 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIG   21 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHC
T ss_pred             EEEECCCCccHHHHHHHHHh
Confidence            68999999999999999854

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=89.97  E-value=0.097  Score=32.34  Aligned_cols=17  Identities=47%  Similarity=0.620  Sum_probs=13.8

Q ss_pred             EEEcCCCCChHH-HHHHH
Q 030848           21 LILGIDKAGKTT-LLEKL   37 (170)
Q Consensus        21 ~vvG~~~~GKSs-l~~~l   37 (170)
                      +++||..||||| |+.++
T Consensus         6 ~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEECSTTSCHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHH
Confidence            578999999999 55555

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.86  E-value=0.12  Score=35.79  Aligned_cols=21  Identities=29%  Similarity=0.414  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      |++++|++|+|||+|+..+..
T Consensus        70 r~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHH
Confidence            799999999999999888754

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=89.05  E-value=0.11  Score=31.45  Aligned_cols=20  Identities=15%  Similarity=0.066  Sum_probs=16.0

Q ss_pred             eEEEEEcCCCCChHHHHHHH
Q 030848           18 FHVLILGIDKAGKTTLLEKL   37 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l   37 (170)
                      -..++.+++|+|||.++-.+
T Consensus         9 ~~~ll~apTGsGKT~~~~~~   28 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAA   28 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHH
Confidence            34578999999999987554

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=88.71  E-value=0.19  Score=34.33  Aligned_cols=19  Identities=21%  Similarity=0.259  Sum_probs=16.2

Q ss_pred             EEEEEcCCCCChHHHHHHH
Q 030848           19 HVLILGIDKAGKTTLLEKL   37 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l   37 (170)
                      -|++.|-.|+||||+.-.+
T Consensus        10 ~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1          10 YLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCcChHHHHHHHH
Confidence            4578999999999987776

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=88.47  E-value=0.17  Score=32.84  Aligned_cols=19  Identities=32%  Similarity=0.438  Sum_probs=16.6

Q ss_pred             EEEEEcCC-CCChHHHHHHH
Q 030848           19 HVLILGID-KAGKTTLLEKL   37 (170)
Q Consensus        19 ~i~vvG~~-~~GKSsl~~~l   37 (170)
                      |+.|.|-. |+||||+.-.|
T Consensus         3 ~~~i~gt~~GVGKTtvs~~L   22 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCAL   22 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHH
Confidence            68899995 99999997777

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.53  E-value=0.35  Score=32.80  Aligned_cols=20  Identities=25%  Similarity=0.448  Sum_probs=15.9

Q ss_pred             eEEEEEcCCCCChHHHHHHH
Q 030848           18 FHVLILGIDKAGKTTLLEKL   37 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l   37 (170)
                      --|++.|-.|+||||+.-.+
T Consensus        21 ~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          21 GLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            33566799999999997666

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.34  E-value=1.5  Score=28.41  Aligned_cols=78  Identities=13%  Similarity=0.133  Sum_probs=43.7

Q ss_pred             eEEEEEEcCCCCcchhhHHHHhhccCEEEEEEeCCCcccHHHHHHHHHHHHcCCCCCCCcEEEEeeCCCccc-cCCHHHH
Q 030848           68 SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRNEDLQGAPLLILANKQDLPD-AVSADEL  146 (170)
Q Consensus        68 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~nK~D~~~-~~~~~~~  146 (170)
                      ..+.++|+|+......  ...+..+|.+++|...+ ..+............. .  ....+-+++|+.+-.. ....+++
T Consensus       110 ~D~viiD~~~~~~~~~--~~~l~~ad~v~~v~~~~-~~~~~~~~~~~~~~~~-~--~~~~~~iv~N~~~~~~~~~~~~~i  183 (232)
T d1hyqa_         110 TDILLLDAPAGLERSA--VIAIAAAQELLLVVNPE-ISSITDGLKTKIVAER-L--GTKVLGVVVNRITTLGIEMAKNEI  183 (232)
T ss_dssp             CSEEEEECCSSSSHHH--HHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHH-H--TCEEEEEEEEEECTTTHHHHHHHH
T ss_pred             cceeeecccccccchh--HHHhhhhheeeeecccc-ccchhhhhhhhhhhhh-c--ccccccccccccccccccchhhhH
Confidence            4689999998664433  33456799999998764 2333333333322222 1  1223457889986433 2333455


Q ss_pred             HhHhC
Q 030848          147 ARYLD  151 (170)
Q Consensus       147 ~~~~~  151 (170)
                      .+.+.
T Consensus       184 ~~~~~  188 (232)
T d1hyqa_         184 EAILE  188 (232)
T ss_dssp             HHHTT
T ss_pred             HhhcC
Confidence            55554

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=86.15  E-value=0.35  Score=32.44  Aligned_cols=31  Identities=16%  Similarity=0.143  Sum_probs=23.7

Q ss_pred             HHHhhhccCceeEEEEEcCCCCChHHHHHHH
Q 030848            7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKL   37 (170)
Q Consensus         7 ~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l   37 (170)
                      ++...+.+.....-++.|++|||||-+.-+.
T Consensus        66 ~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a   96 (233)
T d2eyqa3          66 AVLSDMCQPLAMDRLVCGDVGFGKTEVAMRA   96 (233)
T ss_dssp             HHHHHHHSSSCCEEEEECCCCTTTHHHHHHH
T ss_pred             HHHHHHhccCccCeEEEcCCCCCcHHHHHHH
Confidence            4455555667788899999999999986554

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.86  E-value=0.24  Score=34.40  Aligned_cols=22  Identities=27%  Similarity=0.297  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHh
Q 030848           18 FHVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        18 ~~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      =|++++|++|+|||+++..+..
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHHH
Confidence            3789999999999999876643

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=84.37  E-value=0.17  Score=30.21  Aligned_cols=18  Identities=22%  Similarity=0.117  Sum_probs=13.9

Q ss_pred             eeEEEEEcCCCCChHHHH
Q 030848           17 EFHVLILGIDKAGKTTLL   34 (170)
Q Consensus        17 ~~~i~vvG~~~~GKSsl~   34 (170)
                      .-++++.+++|+|||...
T Consensus         7 ~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           7 GMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TCEEEECCCTTSSTTTTH
T ss_pred             CCcEEEEcCCCCChhHHH
Confidence            356788899999999443

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=83.90  E-value=0.32  Score=31.17  Aligned_cols=17  Identities=29%  Similarity=0.243  Sum_probs=13.6

Q ss_pred             EEEEEcCCCCChHHHHH
Q 030848           19 HVLILGIDKAGKTTLLE   35 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~   35 (170)
                      ++++++++|+|||...-
T Consensus        25 n~lv~~pTGsGKT~i~~   41 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIAM   41 (200)
T ss_dssp             CEEEECCTTSCHHHHHH
T ss_pred             CeEEEeCCCCcHHHHHH
Confidence            47789999999997533

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.36  E-value=0.43  Score=32.63  Aligned_cols=32  Identities=16%  Similarity=0.207  Sum_probs=23.5

Q ss_pred             HHHHhhhccCceeEEEEEcCCCCChHHHHHHH
Q 030848            6 YGLWKYIFTKTEFHVLILGIDKAGKTTLLEKL   37 (170)
Q Consensus         6 ~~~~~~~~~~~~~~i~vvG~~~~GKSsl~~~l   37 (170)
                      .++..-..+...++-++.|+.|||||-..-..
T Consensus        93 ~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a  124 (264)
T d1gm5a3          93 QEIRNDMISEKPMNRLLQGDVGSGKTVVAQLA  124 (264)
T ss_dssp             HHHHHHHHSSSCCCCEEECCSSSSHHHHHHHH
T ss_pred             HHHHHHhhccCcceeeeeccccccccHHHHHH
Confidence            34455555666778899999999999885444

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=82.24  E-value=0.3  Score=34.31  Aligned_cols=14  Identities=43%  Similarity=0.736  Sum_probs=12.8

Q ss_pred             EEEcCCCCChHHHH
Q 030848           21 LILGIDKAGKTTLL   34 (170)
Q Consensus        21 ~vvG~~~~GKSsl~   34 (170)
                      ++.|-+|+|||||.
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            69999999999975

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=82.16  E-value=0.25  Score=34.07  Aligned_cols=21  Identities=29%  Similarity=0.359  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHh
Q 030848           19 HVLILGIDKAGKTTLLEKLKS   39 (170)
Q Consensus        19 ~i~vvG~~~~GKSsl~~~l~~   39 (170)
                      |++++|++|+|||+|+..+..
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHH
T ss_pred             eEeeccCCCCChHHHHHHHHh
Confidence            688999999999999876543

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=81.56  E-value=0.31  Score=34.31  Aligned_cols=15  Identities=40%  Similarity=0.689  Sum_probs=13.2

Q ss_pred             EEEEcCCCCChHHHH
Q 030848           20 VLILGIDKAGKTTLL   34 (170)
Q Consensus        20 i~vvG~~~~GKSsl~   34 (170)
                      -++.|.+|+|||||.
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            489999999999974