Citrus Sinensis ID: 030849

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Protein Sequence
MGGGDEKKLKHRNRVLNNKMPLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSDC
Secondary Structure (PSIPRED)
ccccccEEEEEEEEEEcccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHccHHccccccccEEEEEEccccccccccHHHHHHHcccEEEEEEEcccccccccccccccEEEEEEEccccEEEEEEEEEEEcccccccccccccccccEEEEEccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHcccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccccEEEEccHHHHHHccccEEEEEEEcccccccccccccEEEEEEEEccccEEEEEEEEcHcccccccccccccHHHHHHEEcccHHHcEEEEEEEcc
Coil and Loop (DISEMBL)
mgggdekklKHRNRVLNNKMPLWLTQLVacdrsgspsmeDIEAFCTTYRARLDEAeiaksipentslevsspgvervvriplelerfKDRAMYVKYVGEtvttgspsesdgvFRLISFDmetecctwgladvrinrekagkgrplskkqrEWRLNTTFDSLRLVRLHSDC
Flexible Loop (DISEMBL)
mgggdekklkhrnrvlnnkmplwlTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEiaksipentslevsspgvervvriplelerfkdraMYVKYVGetvttgspsesdGVFRLISFDMETECCTWgladvrinrekagkgrplskkqrewrlnttfdslrlvrlhsdc
Low Complexity Region (SEG)
MGGGDEKKLKHRNRVLNNKMPLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSDC
Disordered region (IsUnstruct)
**************VLNNKMPLWLTQLVACDR******EDIEAFCTTYRARLDEAEI***************GVERVVRIPLELERFKDRAMYVKYVGETVTTG****SDGVFRLISFDMETECCTWGLADVRIN****************WRLNTTFDSLRLV******
Disordered Region (DISOPRED)
**GGDEKKLKHRNRVLNNKMPLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRIN****************WRLNTTFDSLRLVRLHSDC
Disordered Region (DISEMBL)
********LKHRNRVLNNKMPLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREK*********KQREWRLNTTFDSLRLVRLHSDC
Disordered Region (DISPRO)
***GDEKKLKHRNRVLNNKMPLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSDC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGGGDEKKLKHRNRVLNNKMPLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSDC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	170	2.2.26 [Sep-21-2011]
Q2IPZ0	171	Ribosome maturation facto	yes	no	0.452	0.450	0.341	0.0001
B4UHF7	171	Ribosome maturation facto	yes	no	0.452	0.450	0.329	0.0002
B8JFY3	171	Ribosome maturation facto	yes	no	0.452	0.450	0.329	0.0002

>sp|Q2IPZ0|RIMP_ANADE Ribosome maturation factor RimP OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=rimP PE=3 SV=1

 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 5/82 (6%)

Query: 28  VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
           V  D++G   ++D +A   T    LD   +A  I     LEVSSPG++R +R P + +R+
Sbjct: 44  VFIDKAGGVGIDDCQAVSKTVEPILD---VADFIEPAYDLEVSSPGLDRPLRKPRDFDRY 100

Query: 88  KDRAMYVKYVGETVTT--GSPS 107
             + ++VK  G    T  GSP+
Sbjct: 101 AGQRVHVKAYGPVAGTAPGSPA 122

Required for maturation of 30S ribosomal subunits.
Anaeromyxobacter dehalogenans (strain 2CP-C) (taxid: 290397)

>sp|B4UHF7|RIMP_ANASK Ribosome maturation factor RimP OS=Anaeromyxobacter sp. (strain K) GN=rimP PE=3 SV=1

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 5/82 (6%)

Query: 28  VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
           V  D++G   ++D +A   T    LD A++   I     LEVSSPG++R +R P + +R+
Sbjct: 44  VFIDKAGGVGIDDCQAVSKTVEPILDVADV---IEPAYDLEVSSPGLDRPLRKPRDFDRY 100

Query: 88  KDRAMYVKYVGETVTT--GSPS 107
             + ++VK  G    T  G+P+
Sbjct: 101 AGQRVHVKAYGPVAGTAPGAPA 122

Required for maturation of 30S ribosomal subunits.

Anaeromyxobacter sp. (strain K) (taxid: 447217)

>sp|B8JFY3|RIMP_ANAD2 Ribosome maturation factor RimP OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=rimP PE=3 SV=1

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 5/82 (6%)

Query: 28  VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERF 87
           V  D++G   ++D +A   T    LD A++   I     LEVSSPG++R +R P + +R+
Sbjct: 44  VFIDKAGGVGIDDCQAVSKTVEPILDVADV---IEPAYDLEVSSPGLDRPLRKPGDFDRY 100

Query: 88  KDRAMYVKYVGETVTT--GSPS 107
             + ++VK  G    T  G+P+
Sbjct: 101 AGQRVHVKAYGPVAGTAPGAPA 122

Required for maturation of 30S ribosomal subunits.

Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) (taxid: 455488)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
449518382	383	PREDICTED: uncharacterized protein LOC10	0.817	0.362	0.812	3e-62
449462174	312	PREDICTED: uncharacterized protein LOC10	0.817	0.445	0.812	3e-62
255570398	306	conserved hypothetical protein [Ricinus	0.817	0.454	0.805	2e-59
225457765	315	PREDICTED: uncharacterized protein LOC10	0.823	0.444	0.778	3e-58
147801247	231	hypothetical protein VITISV_013332 [Viti	0.817	0.601	0.784	1e-57
224062938	313	predicted protein [Populus trichocarpa]	0.817	0.444	0.776	1e-56
356518601	304	PREDICTED: uncharacterized protein LOC10	0.811	0.453	0.739	2e-54
356509322	307	PREDICTED: uncharacterized protein LOC10	0.811	0.449	0.731	2e-54
388510470	327	unknown [Lotus japonicus]	0.958	0.498	0.632	2e-53
30699240	323	uncharacterized protein [Arabidopsis tha	0.8	0.421	0.707	4e-53

>gi|449518382|ref|XP_004166221.1| PREDICTED: uncharacterized protein LOC101228874 [Cucumis sativus]

 Score =  243 bits (619), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 113/139 (81%), Positives = 127/139 (91%)

Query: 32  RSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRA 91
           +SGSP+MEDIEAF TTYRARLD+AE+AKS+PEN SLEVSSPGVERVVRIP EL+RFK+RA
Sbjct: 245 KSGSPNMEDIEAFSTTYRARLDDAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERA 304

Query: 92  MYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQRE 151
           MYVKY  E VT  S SESDGVF+L+SFD+E +CCTWG+ADV+INREKAGKGRPLSKKQRE
Sbjct: 305 MYVKYTNEVVTASSSSESDGVFKLVSFDIEAKCCTWGIADVKINREKAGKGRPLSKKQRE 364

Query: 152 WRLNTTFDSLRLVRLHSDC 170
           WRL T FDSLRLVRL+SDC
Sbjct: 365 WRLETPFDSLRLVRLYSDC 383

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462174|ref|XP_004148816.1| PREDICTED: uncharacterized protein LOC101204078 [Cucumis sativus]

 Score =  242 bits (618), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 113/139 (81%), Positives = 127/139 (91%)

Query: 32  RSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRA 91
           +SGSP+MEDIEAF TTYRARLD+AE+AKS+PEN SLEVSSPGVERVVRIP EL+RFK+RA
Sbjct: 174 KSGSPNMEDIEAFSTTYRARLDDAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERA 233

Query: 92  MYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQRE 151
           MYVKY  E VT  S SESDGVF+L+SFD+E +CCTWG+ADV+INREKAGKGRPLSKKQRE
Sbjct: 234 MYVKYTNEVVTASSSSESDGVFKLVSFDIEAKCCTWGIADVKINREKAGKGRPLSKKQRE 293

Query: 152 WRLNTTFDSLRLVRLHSDC 170
           WRL T FDSLRLVRL+SDC
Sbjct: 294 WRLETPFDSLRLVRLYSDC 312

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570398|ref|XP_002526158.1| conserved hypothetical protein [Ricinus communis] gi|223534535|gb|EEF36234.1| conserved hypothetical protein [Ricinus communis]

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/139 (80%), Positives = 125/139 (89%)

Query: 31  DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
           +RSGSP+MEDIEAF TTYR  LDEAE+AK+IP N +LEVSSPGVER+VRIP EL+RFKDR
Sbjct: 167 NRSGSPTMEDIEAFSTTYRTWLDEAELAKTIPTNIALEVSSPGVERIVRIPEELDRFKDR 226

Query: 91  AMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQR 150
           +MYVKY  ET    SPSE+DGVFRLISFD+ETECCTWGLADVRINREK+GKGRPLSKKQR
Sbjct: 227 SMYVKYASETSGMESPSENDGVFRLISFDIETECCTWGLADVRINREKSGKGRPLSKKQR 286

Query: 151 EWRLNTTFDSLRLVRLHSD 169
           EWRLNT FDSL LVRL+S+
Sbjct: 287 EWRLNTRFDSLLLVRLYSE 305

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457765|ref|XP_002264003.1| PREDICTED: uncharacterized protein LOC100266148 [Vitis vinifera] gi|302142766|emb|CBI19969.3| unnamed protein product [Vitis vinifera]

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 109/140 (77%), Positives = 122/140 (87%)

Query: 31  DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
           ++SGSPSM DIEAF + YRA+LDEAEIA S+PEN SLEVSSPGVERVV+IP EL+RFK+R
Sbjct: 176 NKSGSPSMTDIEAFSSIYRAKLDEAEIAGSVPENLSLEVSSPGVERVVQIPQELDRFKER 235

Query: 91  AMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQR 150
            MYVKYV E V  GS  ESDG+FRL+SFD+ET CCTWGLADVRINR KAGKGRPLSKKQR
Sbjct: 236 PMYVKYVTEGVAPGSTIESDGIFRLVSFDLETNCCTWGLADVRINRAKAGKGRPLSKKQR 295

Query: 151 EWRLNTTFDSLRLVRLHSDC 170
           EWRLNT FDSL LVRL+S+ 
Sbjct: 296 EWRLNTPFDSLCLVRLYSEI 315

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147801247|emb|CAN61512.1| hypothetical protein VITISV_013332 [Vitis vinifera]

 Score =  227 bits (579), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 109/139 (78%), Positives = 122/139 (87%)

Query: 31  DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
           ++SGSPSM DIEAF + YRA+LDEAEIA S+PEN SLEVSSPGVERVV+IP EL+RFK+R
Sbjct: 92  NKSGSPSMTDIEAFSSIYRAKLDEAEIAGSVPENLSLEVSSPGVERVVQIPQELDRFKER 151

Query: 91  AMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQR 150
            MYVKYV E V  GS  ESDG+FRL+SFD+ET CCTWGLADVRINR KAGKGRPLSKKQR
Sbjct: 152 PMYVKYVTEGVAPGSTIESDGIFRLVSFDLETNCCTWGLADVRINRAKAGKGRPLSKKQR 211

Query: 151 EWRLNTTFDSLRLVRLHSD 169
           EWRLNT FDSL LVRL+S+
Sbjct: 212 EWRLNTPFDSLCLVRLYSE 230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062938|ref|XP_002300938.1| predicted protein [Populus trichocarpa] gi|222842664|gb|EEE80211.1| predicted protein [Populus trichocarpa]

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 108/139 (77%), Positives = 123/139 (88%)

Query: 31  DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
           ++SGSP+MEDIEAF TTYRARLDEAE+AK+I EN +LEVSSPGVERVVRIP +L+RFKDR
Sbjct: 174 NKSGSPNMEDIEAFSTTYRARLDEAELAKTITENITLEVSSPGVERVVRIPEDLDRFKDR 233

Query: 91  AMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQR 150
           AMYVKYV E     S SESDGV RL+SFDMET+ CTWGLADVR+NREKAGKGRPLSKKQR
Sbjct: 234 AMYVKYVNEADAKDSSSESDGVLRLVSFDMETKYCTWGLADVRVNREKAGKGRPLSKKQR 293

Query: 151 EWRLNTTFDSLRLVRLHSD 169
           EWRL+T F SLRLVR++ +
Sbjct: 294 EWRLDTPFHSLRLVRVYPE 312

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518601|ref|XP_003527967.1| PREDICTED: uncharacterized protein LOC100803868 [Glycine max]

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 102/138 (73%), Positives = 117/138 (84%)

Query: 32  RSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRA 91
           +SGSPSMEDIEAF TTYRA+LDEAEIAK +P+N  LEVSSPGVER+VRIP +L+RFKDR 
Sbjct: 166 KSGSPSMEDIEAFSTTYRAKLDEAEIAKVVPDNICLEVSSPGVERIVRIPDDLDRFKDRP 225

Query: 92  MYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQRE 151
           MYVKY          +E DGVF+L SFDMET+CCTWGLADV++NR+KAGKGRPL+KKQ E
Sbjct: 226 MYVKYAINDDQNNPAAEGDGVFKLESFDMETKCCTWGLADVKVNRQKAGKGRPLNKKQSE 285

Query: 152 WRLNTTFDSLRLVRLHSD 169
           WRL+T FDSLR VRLHSD
Sbjct: 286 WRLSTPFDSLRFVRLHSD 303

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509322|ref|XP_003523399.1| PREDICTED: uncharacterized protein LOC100783320 [Glycine max]

 Score =  216 bits (550), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 101/138 (73%), Positives = 118/138 (85%)

Query: 32  RSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRA 91
           +SGSPS+EDIEAF  TYRA+LDEAE+AKS+P+N  LEVSSPGVER+VRIP +L+RFK+R 
Sbjct: 169 KSGSPSLEDIEAFSATYRAKLDEAELAKSVPDNICLEVSSPGVERIVRIPDDLDRFKERP 228

Query: 92  MYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQRE 151
           MYVKY          +E DGVFRL SFDMET+CCTWGLADV++NR+KAGKGRPL+KKQRE
Sbjct: 229 MYVKYAINDDLNNPAAEGDGVFRLESFDMETKCCTWGLADVKVNRQKAGKGRPLNKKQRE 288

Query: 152 WRLNTTFDSLRLVRLHSD 169
           WRL+T FDSLR VRLHSD
Sbjct: 289 WRLSTPFDSLRFVRLHSD 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510470|gb|AFK43301.1| unknown [Lotus japonicus]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 105/166 (63%), Positives = 134/166 (80%), Gaps = 3/166 (1%)

Query: 4   GDEKKLKHRNRVLNNKMPLWLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPE 63
           GD +    R  + N+ + + + +L   ++SGSP++EDIEAF TTYRA+LDEAE+ KS+PE
Sbjct: 162 GDLQIYAFRTLLRNSAIQVRIEKL--SNKSGSPNIEDIEAFSTTYRAKLDEAELTKSVPE 219

Query: 64  NTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPS-ESDGVFRLISFDMET 122
           N +LEVSSPGVERVVRIP +L+RFKDR+MYV+Y  +   + +PS E DGVF+L SFD++T
Sbjct: 220 NLTLEVSSPGVERVVRIPDDLDRFKDRSMYVRYAIDDDDSMNPSAEGDGVFKLESFDLDT 279

Query: 123 ECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHS 168
           + CTW LADVR+NREKAGKGRPL+KKQREWRL+T FDSLR VRLHS
Sbjct: 280 KYCTWSLADVRVNREKAGKGRPLNKKQREWRLSTPFDSLRFVRLHS 325

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30699240|ref|NP_849898.1| uncharacterized protein [Arabidopsis thaliana] gi|62320812|dbj|BAD93751.1| hypothetical protein [Arabidopsis thaliana] gi|110742469|dbj|BAE99153.1| hypothetical protein [Arabidopsis thaliana] gi|114050645|gb|ABI49472.1| At1g77122 [Arabidopsis thaliana] gi|332197817|gb|AEE35938.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  212 bits (539), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 99/140 (70%), Positives = 118/140 (84%), Gaps = 4/140 (2%)

Query: 31  DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
           ++ GSP+MEDIEAF T YRA+L EAE+AKSIP+N SLEVSSPGVERVVRIP +L+R+KDR
Sbjct: 188 NKFGSPTMEDIEAFSTIYRAKLAEAELAKSIPDNISLEVSSPGVERVVRIPQDLDRYKDR 247

Query: 91  AMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQR 150
            MYV+Y  E   T    E DG+FRL+SFD+E + C WG+AD+R+NREKAGKGRPLSKKQR
Sbjct: 248 PMYVRYTNEDTET----EGDGIFRLVSFDVEAKICIWGIADIRVNREKAGKGRPLSKKQR 303

Query: 151 EWRLNTTFDSLRLVRLHSDC 170
           EWRL T F+SLRLVRLHS+C
Sbjct: 304 EWRLETAFESLRLVRLHSEC 323

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
TAIR|locus:1005716723	323	AT1G77122 "AT1G77122" [Arabido	0.8	0.421	0.707	8.3e-51
TAIR|locus:2033263	305	AT1G69210 "AT1G69210" [Arabido	0.788	0.439	0.463	1.3e-27

TAIR|locus:1005716723 AT1G77122 "AT1G77122" [Arabidopsis thaliana (taxid:3702)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 99/140 (70%), Positives = 118/140 (84%)

Query:    31 DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
             ++ GSP+MEDIEAF T YRA+L EAE+AKSIP+N SLEVSSPGVERVVRIP +L+R+KDR
Sbjct:   188 NKFGSPTMEDIEAFSTIYRAKLAEAELAKSIPDNISLEVSSPGVERVVRIPQDLDRYKDR 247

Query:    91 AMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQR 150
              MYV+Y  E   T    E DG+FRL+SFD+E + C WG+AD+R+NREKAGKGRPLSKKQR
Sbjct:   248 PMYVRYTNEDTET----EGDGIFRLVSFDVEAKICIWGIADIRVNREKAGKGRPLSKKQR 303

Query:   151 EWRLNTTFDSLRLVRLHSDC 170
             EWRL T F+SLRLVRLHS+C
Sbjct:   304 EWRLETAFESLRLVRLHSEC 323

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2033263 AT1G69210 "AT1G69210" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 63/136 (46%), Positives = 87/136 (63%)

Query:    34 GSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMY 93
             G P+M+++E F   ++ RLD+A   K IPE+ +LEVSSPG ER++R+P +L RFKD  M 
Sbjct:   172 GCPTMDELEEFSREFKKRLDDAGAEKVIPEDLALEVSSPGAERLLRVPEDLPRFKDMPMT 231

Query:    94 VKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWR 153
             V YV ET      +   GVF L S D E++ C W LADVR NR+   KGRPLS+KQ++ R
Sbjct:   232 VSYVEET--NSRKAVKSGVFLLESIDAESDNCVWKLADVRENRDPESKGRPLSRKQKDLR 289

Query:   154 LNTTFDSLRLVRLHSD 169
             +   F   + + L+ D
Sbjct:   290 ITLPFADHKKINLYLD 305


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      170       170   0.00086  108 3  11 22  0.41    32
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  155 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.28u 0.11s 16.39t   Elapsed:  00:00:01
  Total cpu time:  16.28u 0.11s 16.39t   Elapsed:  00:00:01
  Start:  Fri May 10 00:25:50 2013   End:  Fri May 10 00:25:51 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	170
pfam02576	140	pfam02576, DUF150, Uncharacterized BCR, YhbC famil	3e-10
COG0779	153	COG0779, COG0779, Uncharacterized protein conserve	4e-07
PRK00092	154	PRK00092, PRK00092, ribosome maturation protein Ri	2e-06
PRK14635	162	PRK14635, PRK14635, hypothetical protein; Provisio	8e-05
PRK14638	150	PRK14638, PRK14638, hypothetical protein; Provisio	0.001
PRK14647	159	PRK14647, PRK14647, hypothetical protein; Provisio	0.002

>gnl|CDD|217116 pfam02576, DUF150, Uncharacterized BCR, YhbC family COG0779

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 10/106 (9%)

Query: 31  DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
           D+ G  +++D E       A LD  +    IPE   LEVSSPG+ER ++      RF  +
Sbjct: 32  DKDGGVTLDDCEEVSRAISALLDVEDP---IPEAYFLEVSSPGLERPLKTERHFARFIGK 88

Query: 91  AMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINR 136
              VK     V+   P +    F     +++ +  T  + D    R
Sbjct: 89  --LVK-----VSLKEPIDGRKNFTGKLLEVDGDTVTIEVDDKERKR 127

Length = 140

>gnl|CDD|223850 COG0779, COG0779, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 30/115 (26%), Positives = 43/115 (37%), Gaps = 12/115 (10%)

Query: 31  DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
           D+ G  +++D         A LD  +    I     LEVSSPG++R ++      RF   
Sbjct: 44  DKEGGVTLDDCADVSRAISALLDVED---PIEGAYFLEVSSPGLDRPLKTAEHFARFIGE 100

Query: 91  AMYVKYVGETVTTGSPSESDGVFR--LISFDMETECCTWGLADVRINREKAGKGR 143
              VK     V    P E    F   +++ D ET        +V I      K R
Sbjct: 101 --KVK-----VKLRLPIEGRKKFEGKIVAVDGETVTLEVDGKEVEIPFSDIAKAR 148

Length = 153

>gnl|CDD|234627 PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed

 Score = 44.8 bits (107), Expect = 2e-06
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 16/96 (16%)

Query: 31  DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
           D+ G   ++D E       A LD  +    IP   +LEVSSPG++R    PL     K R
Sbjct: 43  DKEGGIDLDDCEEVSRQISAVLDVEDP---IPGAYTLEVSSPGLDR----PL----KKAR 91

Query: 91  AMYVKYVGETV--TTGSPSESDGVF--RLISFDMET 122
             + +++G  V      P +    F   L++ D ET
Sbjct: 92  D-FRRFIGREVKVKLYEPIDGRKKFQGILLAVDGET 126

Length = 154

>gnl|CDD|184774 PRK14635, PRK14635, hypothetical protein; Provisional

 Score = 40.7 bits (95), Expect = 8e-05
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 31  DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPE-NTSLEVSSPGVERVVRIPLELERFKD 89
              GS S+ +    C     +L E E+ +  P+ + +L+VSS G ER +R+P +L+RF  
Sbjct: 45  HPYGSVSLLE----CEQVSRKLKE-ELERISPDLDFTLKVSSAGAERKLRLPEDLDRF-- 97

Query: 90  RAMYVKYVGETVTTGSPSESDGVFRLISFD 119
           R + V+ V  +  +      +G+FRL++ D
Sbjct: 98  RGIPVRLVFRSEESE--KWQEGIFRLVNRD 125

Length = 162

>gnl|CDD|184777 PRK14638, PRK14638, hypothetical protein; Provisional

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 12/106 (11%)

Query: 23  WLTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPL 82
           W+ +++  +  G  S+ D E F       LD  ++   I  + +LEVSSPG++R +R P 
Sbjct: 37  WVLRIIIDNPVGYVSVRDCELFSREIERFLDREDL---IEHSYTLEVSSPGLDRPLRGPK 93

Query: 83  ELERF---------KDRAMYVKYVGETVTTGSPSESDGVFRLISFD 119
           +  RF         KD   ++  +   V        +     I+ D
Sbjct: 94  DYVRFTGKLAKIVTKDGKTFIGRIESFVDGTITISDEKEKYEINID 139

Length = 150

>gnl|CDD|173110 PRK14647, PRK14647, hypothetical protein; Provisional

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 31  DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
           D+ G  +++D           LD  +    IPE  +LEVSSPG++R ++   + ER+  R
Sbjct: 44  DKEGGVNLDDCAEVSRELSEILDVEDF---IPERYTLEVSSPGLDRPLKKEADYERYAGR 100

Query: 91  AMYVK 95
            + V+
Sbjct: 101 LVKVR 105

Length = 159

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	170
PRK14640	152	hypothetical protein; Provisional	100.0
PRK14633	150	hypothetical protein; Provisional	100.0
COG0779	153	Uncharacterized protein conserved in bacteria [Fun	100.0
PRK14634	155	hypothetical protein; Provisional	100.0
PRK14646	155	hypothetical protein; Provisional	100.0
PRK14647	159	hypothetical protein; Provisional	100.0
PRK14643	164	hypothetical protein; Provisional	100.0
PRK14639	140	hypothetical protein; Provisional	100.0
PRK14632	172	hypothetical protein; Provisional	100.0
PRK14636	176	hypothetical protein; Provisional	100.0
PRK14631	174	hypothetical protein; Provisional	100.0
PRK14638	150	hypothetical protein; Provisional	100.0
PRK00092	154	ribosome maturation protein RimP; Reviewed	100.0
PRK14630	143	hypothetical protein; Provisional	100.0
PF02576	141	DUF150: Uncharacterised BCR, YhbC family COG0779;	100.0
PRK14641	173	hypothetical protein; Provisional	100.0
PRK02001	152	hypothetical protein; Validated	100.0
PRK14637	151	hypothetical protein; Provisional	100.0
PRK14642	197	hypothetical protein; Provisional	100.0
PRK14635	162	hypothetical protein; Provisional	100.0
PRK14644	136	hypothetical protein; Provisional	100.0
PRK14645	154	hypothetical protein; Provisional	100.0
cd01734	83	YlxS_C YxlS is a Bacillus subtilis gene of unknown	99.89

>PRK14640 hypothetical protein; Provisional

Probab=100.00  E-value=8.8e-39  Score=251.15  Aligned_cols=125  Identities=18%  Similarity=0.275  Sum_probs=112.0

Q ss_pred             ccccccCCcceeE-----------EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCC
Q 030849           12 RNRVLNNKMPLWL-----------TQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRI   80 (170)
Q Consensus        12 ~~~~~~~g~~~~~-----------lrv~~iD~~~gvtlddC~~vSr~is~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~   80 (170)
                      .|+++++||++|.           |||| ||+++|||+|||+.+||+|+++||++|   +|+++|+|||||||++|||++
T Consensus        13 ~p~~~~~G~el~dve~~~~~~~~~lrV~-ID~~~gv~lddC~~vSr~is~~LD~~d---~i~~~Y~LEVSSPGl~RpL~~   88 (152)
T PRK14640         13 EAPVVALGFELWGIEFIRAGKHSTLRVY-IDGENGVSVENCAEVSHQVGAIMDVED---PITEEYYLEVSSPGLDRPLFK   88 (152)
T ss_pred             HHHHHhcCCEEEEEEEEecCCCcEEEEE-EECCCCCCHHHHHHHHHHHHHHhcccc---cCCCCeEEEEeCCCCCCcCCC
Confidence            5788999999874           7899 999999999999999999999999999   999999999999999999999


Q ss_pred             hHHHHhcCCCeEEEEEEeccccCCCCCCCCceE--EEEEEcCCcceEeeceeeeEEeecccCCCCCCcccccceeEEeec
Q 030849           81 PLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTF  158 (170)
Q Consensus        81 ~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f--~L~~vd~~~~~~~~~~~~v~i~~~k~~Kgk~~~~~~~~~~v~ip~  158 (170)
                      ++||+||+|+.|+|++.+       +..++++|  +|.++++++         ++++           .+..+  +.|||
T Consensus        89 ~~~f~r~~G~~v~V~l~~-------~~~~~k~~~G~L~~v~~~~---------v~l~-----------~~~~~--~~i~~  139 (152)
T PRK14640         89 VAQFEKYVGQEAAVTLRM-------ATNNRRKFKGVIKAVQGDM---------ITLT-----------VDGKD--EVLAF  139 (152)
T ss_pred             HHHHHHhCCCeEEEEEec-------ccCCceEEEEEEEEEeCCE---------EEEE-----------ECCeE--EEEEh
Confidence            999999999999999999       77788888  999999998         4444           11112  68999


Q ss_pred             cccceeEEEec
Q 030849          159 DSLRLVRLHSD  169 (170)
Q Consensus       159 ~~I~karL~i~  169 (170)
                      ++|++|||.++
T Consensus       140 ~~I~ka~l~~~  150 (152)
T PRK14640        140 TNIQKANIVPN  150 (152)
T ss_pred             HHeeeEEEecc
Confidence            99999999875

>PRK14633 hypothetical protein; Provisional

Probab=100.00  E-value=1.8e-38  Score=249.00  Aligned_cols=126  Identities=21%  Similarity=0.301  Sum_probs=112.2

Q ss_pred             ccccccCCcceeE----------EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCCh
Q 030849           12 RNRVLNNKMPLWL----------TQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIP   81 (170)
Q Consensus        12 ~~~~~~~g~~~~~----------lrv~~iD~~~gvtlddC~~vSr~is~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~~   81 (170)
                      .|+++++||++|.          |||| ||+++|||+|||+.+||+|+++||++|   +|+++|+|||||||++|||+++
T Consensus        11 ~p~~~~~G~eL~dve~~~~~~~~lrV~-ID~~~Gv~lddC~~vSr~i~~~LD~~d---~i~~~Y~LEVSSPGldRpL~~~   86 (150)
T PRK14633         11 EPITADLGYILWGIEVVGSGKLTIRIF-IDHENGVSVDDCQIVSKEISAVFDVED---PVSGKYILEVSSPGMNRQIFNI   86 (150)
T ss_pred             HHHHHHCCCEEEEEEEEeCCCcEEEEE-EeCCCCCCHHHHHHHHHHHHHHhccCc---CCCCCeEEEEeCCCCCCCCCCH
Confidence            5788999999884          7899 999999999999999999999999999   9999999999999999999999


Q ss_pred             HHHHhcCCCeEEEEEEeccccCCCCCCCCceE--EEEEEcCCcceEeeceeeeEEeecccCCCCCCcccccceeEEeecc
Q 030849           82 LELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFD  159 (170)
Q Consensus        82 ~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f--~L~~vd~~~~~~~~~~~~v~i~~~k~~Kgk~~~~~~~~~~v~ip~~  159 (170)
                      +||+||+|+.|+|++++       +.+++++|  +|.++++++         ++++-          ....  .++|||+
T Consensus        87 ~~f~r~~G~~v~V~~~~-------~~~~~~~~~G~L~~v~~~~---------i~l~~----------~~~~--~~~i~~~  138 (150)
T PRK14633         87 IQAQALVGFNVKAVTLA-------PVGSQTKFKGVLERVEGNN---------VILNL----------EDGK--EISFDFD  138 (150)
T ss_pred             HHHHHhCCCeEEEEEec-------ccCCcEEEEEEEEEEeCCE---------EEEEE----------cCCc--EEEEEhH
Confidence            99999999999999999       77788888  999999999         44441          0111  2789999


Q ss_pred             ccceeEEEec
Q 030849          160 SLRLVRLHSD  169 (170)
Q Consensus       160 ~I~karL~i~  169 (170)
                      +|++|||.++
T Consensus       139 ~I~ka~l~~~  148 (150)
T PRK14633        139 ELKKLRVSPD  148 (150)
T ss_pred             HeeeEEEecc
Confidence            9999999875

>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=100.00  E-value=1.9e-38  Score=249.33  Aligned_cols=125  Identities=26%  Similarity=0.382  Sum_probs=112.7

Q ss_pred             ccccccCCccee-----------EEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCC
Q 030849           12 RNRVLNNKMPLW-----------LTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRI   80 (170)
Q Consensus        12 ~~~~~~~g~~~~-----------~lrv~~iD~~~gvtlddC~~vSr~is~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~   80 (170)
                      .|.++++|||++           .|||+ ||++||||+|||+.+||+||+.||++|   ||++.|+|||||||++|||++
T Consensus        15 ep~~~~lG~ELv~ve~~~~~~~~~lrI~-id~~g~v~lddC~~vSr~is~~LD~ed---pi~~~Y~LEVSSPGldRpL~~   90 (153)
T COG0779          15 EPVVESLGFELVDVEFVKEGRDSVLRIY-IDKEGGVTLDDCADVSRAISALLDVED---PIEGAYFLEVSSPGLDRPLKT   90 (153)
T ss_pred             HHhHhhcCcEEEEEEEEEcCCCcEEEEE-eCCCCCCCHHHHHHHHHHHHHHhccCC---cccccEEEEeeCCCCCCCcCC
Confidence            578999999976           57899 999999999999999999999999999   999999999999999999999


Q ss_pred             hHHHHhcCCCeEEEEEEeccccCCCCCCCCceE--EEEEEcCCcceEeeceeeeEEeecccCCCCCCcccccceeEEeec
Q 030849           81 PLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTF  158 (170)
Q Consensus        81 ~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f--~L~~vd~~~~~~~~~~~~v~i~~~k~~Kgk~~~~~~~~~~v~ip~  158 (170)
                      ++||.||+|+.|+|+++.       ++++++.|  +|..++++.         +++.           ..+.+  +.|||
T Consensus        91 ~~~f~r~~G~~Vkv~l~~-------~~~~~k~~~G~i~~~d~~~---------v~~~-----------~~~k~--v~Ip~  141 (153)
T COG0779          91 AEHFARFIGEKVKVKLRL-------PIEGRKKFEGKIVAVDGET---------VTLE-----------VDGKE--VEIPF  141 (153)
T ss_pred             HHHHHHhcCcEEEEEEec-------ccCCceEEEEEEEEEcCCe---------EEEE-----------ECCEE--EEEEc
Confidence            999999999999999999       88889999  999999999         4333           11222  79999


Q ss_pred             cccceeEEEec
Q 030849          159 DSLRLVRLHSD  169 (170)
Q Consensus       159 ~~I~karL~i~  169 (170)
                      ++|+||||.+.
T Consensus       142 ~~i~kArl~~~  152 (153)
T COG0779         142 SDIAKARLVPE  152 (153)
T ss_pred             ccchhheeccc
Confidence            99999999875

>PRK14634 hypothetical protein; Provisional

Probab=100.00  E-value=3.4e-38  Score=248.61  Aligned_cols=125  Identities=22%  Similarity=0.281  Sum_probs=111.6

Q ss_pred             ccccccCCccee-----------EEEEEEEcCCCC--CCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCC
Q 030849           12 RNRVLNNKMPLW-----------LTQLVACDRSGS--PSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVV   78 (170)
Q Consensus        12 ~~~~~~~g~~~~-----------~lrv~~iD~~~g--vtlddC~~vSr~is~~LD~~d~~~~i~~~Y~LEVSSPGieRpL   78 (170)
                      .++++++||++|           +|||| ||+++|  ||+|||+.+||+||++||++|   +|+++|+|||||||++|||
T Consensus        14 ~~~~~~~G~elvdve~~~~~~~~~lrV~-ID~~~g~~v~lddC~~vSr~is~~LD~~d---~i~~~Y~LEVSSPGldRpL   89 (155)
T PRK14634         14 SATAADKGFELCGIQVLTHLQPMTLQVQ-IRRSSGSDVSLDDCAGFSGPMGEALEASQ---LLTEAYVLEISSPGIGDQL   89 (155)
T ss_pred             HHHHHHcCCEEEEEEEEeCCCCcEEEEE-EECCCCCcccHHHHHHHHHHHHHHhcccc---cCCCCeEEEEeCCCCCCcC
Confidence            577889999977           47899 999888  999999999999999999999   9999999999999999999


Q ss_pred             CChHHHHhcCCCeEEEEEEeccccCCCCCCCCceE--EEEEEcCCcceEeeceeeeEEeecccCCCCCCcccccceeEEe
Q 030849           79 RIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNT  156 (170)
Q Consensus        79 ~~~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f--~L~~vd~~~~~~~~~~~~v~i~~~k~~Kgk~~~~~~~~~~v~i  156 (170)
                      ++++||+||+|+.|+|++.+       +.+++++|  +|.+++++.         |+++           ....  .++|
T Consensus        90 ~~~~~f~r~~G~~V~V~l~~-------~~~~~k~~~G~L~~~~~~~---------v~l~-----------~~~~--~~~i  140 (155)
T PRK14634         90 SSDRDFQTFRGFPVEVSHRD-------DDGSEQRLEGLLLERNEDH---------LQIN-----------IRGR--IKRI  140 (155)
T ss_pred             CCHHHHHHhCCCeEEEEEec-------CCCCeEEEEEEEEEEeCCE---------EEEE-----------ECCE--EEEE
Confidence            99999999999999999999       77788888  999999999         4444           1111  2789


Q ss_pred             eccccceeEEEec
Q 030849          157 TFDSLRLVRLHSD  169 (170)
Q Consensus       157 p~~~I~karL~i~  169 (170)
                      ||++|++|||.++
T Consensus       141 ~~~~I~ka~l~~~  153 (155)
T PRK14634        141 PRDSVISVRLTNP  153 (155)
T ss_pred             EHHHeeeEEeCCC
Confidence            9999999999875

>PRK14646 hypothetical protein; Provisional

Probab=100.00  E-value=5.1e-38  Score=247.62  Aligned_cols=123  Identities=15%  Similarity=0.215  Sum_probs=109.7

Q ss_pred             ccccccCCccee-----------EEEEEEEcCCC--CCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCC
Q 030849           12 RNRVLNNKMPLW-----------LTQLVACDRSG--SPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVV   78 (170)
Q Consensus        12 ~~~~~~~g~~~~-----------~lrv~~iD~~~--gvtlddC~~vSr~is~~LD~~d~~~~i~~~Y~LEVSSPGieRpL   78 (170)
                      .|+++++||++|           +|||| ||+++  |||+|||+.+||+|+++||++|   ||+++|+|||||||++|||
T Consensus        14 ~p~~~~~G~eLvdve~~~~~~~~~LrV~-IDk~~g~gVtldDC~~vSr~is~~LD~~D---~i~~~Y~LEVSSPGldRpL   89 (155)
T PRK14646         14 EKVANEFDLKICSLNIQTNQNPIVIKII-IKKTNGDDISLDDCALFNTPASEEIENSN---LLNCSYVLEISSQGVSDEL   89 (155)
T ss_pred             HHHHHHcCCEEEEEEEEeCCCCeEEEEE-EECCCCCCccHHHHHHHHHHHHHHhCcCC---CCCCCeEEEEcCCCCCCcC
Confidence            578899999977           47999 99973  5999999999999999999999   9999999999999999999


Q ss_pred             CChHHHHhcCCCeEEEEEEeccccCCCCCCCCceE--EEEEEcCCcceEeeceeeeEEeecccCCCCCCcccccceeEEe
Q 030849           79 RIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNT  156 (170)
Q Consensus        79 ~~~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f--~L~~vd~~~~~~~~~~~~v~i~~~k~~Kgk~~~~~~~~~~v~i  156 (170)
                      ++++||+||+|+.|+|++.+       +.++++.|  +|.+++++.         ++++           .++.  .++|
T Consensus        90 ~~~~df~r~~G~~v~V~l~~-------~~~~~~~~~G~L~~~~~~~---------v~l~-----------~~g~--~~~i  140 (155)
T PRK14646         90 TSERDFKTFKGFPVNVELNQ-------KNSKIKFLNGLLYEKSKDY---------LAIN-----------IKGK--IKKI  140 (155)
T ss_pred             CCHHHHHHhCCCEEEEEEec-------CcCCeEEEEEEEEEEeCCE---------EEEE-----------ECCE--EEEE
Confidence            99999999999999999999       77788888  999999999         5554           1122  2789


Q ss_pred             eccccceeEEE
Q 030849          157 TFDSLRLVRLH  167 (170)
Q Consensus       157 p~~~I~karL~  167 (170)
                      ||++|++|||.
T Consensus       141 ~~~~I~ka~L~  151 (155)
T PRK14646        141 PFNEVLKISLC  151 (155)
T ss_pred             EHHHeeeEEeC
Confidence            99999999985

>PRK14647 hypothetical protein; Provisional

Probab=100.00  E-value=8.9e-38  Score=246.99  Aligned_cols=131  Identities=22%  Similarity=0.322  Sum_probs=111.2

Q ss_pred             ccccccCCcceeE-----------EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCC
Q 030849           12 RNRVLNNKMPLWL-----------TQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRI   80 (170)
Q Consensus        12 ~~~~~~~g~~~~~-----------lrv~~iD~~~gvtlddC~~vSr~is~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~   80 (170)
                      .|+++++||++|.           |||| ||+++|||+|||+.+||+|+++||++|   +|+++|+|||||||++|||++
T Consensus        15 ~~~~~~~G~~L~dv~~~~~~~~~~lrV~-ID~~~gvslddC~~vSr~is~~LD~~d---~i~~~Y~LEVSSPG~~RpL~~   90 (159)
T PRK14647         15 EQVLSSLGLELVELEYKREGREMVLRLF-IDKEGGVNLDDCAEVSRELSEILDVED---FIPERYTLEVSSPGLDRPLKK   90 (159)
T ss_pred             HHHHHHCCCEEEEEEEEecCCCeEEEEE-EeCCCCCCHHHHHHHHHHHHHHHcccc---cCCCCeEEEEcCCCCCCcCCC
Confidence            5788999999884           7899 999999999999999999999999998   999999999999999999999


Q ss_pred             hHHHHhcCCCeEEEEEEeccccCCCCCCCCceE--EEEEEcCCcceEeeceeeeEEeecccCCCCCCcccccceeEEeec
Q 030849           81 PLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTF  158 (170)
Q Consensus        81 ~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f--~L~~vd~~~~~~~~~~~~v~i~~~k~~Kgk~~~~~~~~~~v~ip~  158 (170)
                      ++||+||+|+.|+|++.++.++.  +-+++++|  +|.+++++.         ++++.          ....  .++|||
T Consensus        91 ~~~f~r~~G~~v~V~l~~~~~~~--~~~~~~~~~G~L~~~~~~~---------v~l~~----------~~~~--~~~i~~  147 (159)
T PRK14647         91 EADYERYAGRLVKVRTFELLADE--AGNKRKTFLGELEGLADGV---------VTIAL----------KEGQ--QARIPL  147 (159)
T ss_pred             HHHHHHhCCcEEEEEEecccccc--ccCCceEEEEEEEeecCCE---------EEEEE----------cCCc--EEEEEH
Confidence            99999999999999999833210  01257888  999999998         55541          0011  278999


Q ss_pred             cccceeEEEec
Q 030849          159 DSLRLVRLHSD  169 (170)
Q Consensus       159 ~~I~karL~i~  169 (170)
                      ++|++|+|.++
T Consensus       148 ~~I~ka~l~~e  158 (159)
T PRK14647        148 DKIAKANLEFE  158 (159)
T ss_pred             HHCCEEEEeee
Confidence            99999999876

>PRK14643 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-37  Score=247.65  Aligned_cols=131  Identities=15%  Similarity=0.274  Sum_probs=111.8

Q ss_pred             ccccccCCcceeE-----------EEEEEEcC----CCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCC
Q 030849           12 RNRVLNNKMPLWL-----------TQLVACDR----SGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVER   76 (170)
Q Consensus        12 ~~~~~~~g~~~~~-----------lrv~~iD~----~~gvtlddC~~vSr~is~~LD~~d~~~~i~~~Y~LEVSSPGieR   76 (170)
                      .|+++++||++|.           |||| ||+    +||||+|||+.+||+||++||++|   ||+++|+|||||||++|
T Consensus        16 ~p~~~~~G~eL~die~~~~~~~~~lrV~-Id~~~~~~ggvtldDC~~vSr~is~~LD~~d---~i~~~Y~LEVSSPGleR   91 (164)
T PRK14643         16 NKELEVLNLKVYEINNLKEFENDMIQIL-VEDILQANKPLDFDILIKANDLVSNKIDQFI---KTSEKYLLEISSSGIEK   91 (164)
T ss_pred             HHHHHhcCCEEEEEEEEecCCCcEEEEE-EecCCCcCCCcCHHHHHHHHHHHHHHhCccC---CCCCCeEEEecCCCCCC
Confidence            5789999999874           7999 985    468999999999999999999999   99999999999999999


Q ss_pred             CCCChHHHHhcCCCeEEEEEEeccccCCCCCCCCceE--EEEEEcCCcceEeeceeeeEEeecccCCCCCCcccccceeE
Q 030849           77 VVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRL  154 (170)
Q Consensus        77 pL~~~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f--~L~~vd~~~~~~~~~~~~v~i~~~k~~Kgk~~~~~~~~~~v  154 (170)
                      ||++++||.||+|+.|+|++++       +.+|+++|  +|.+++++.++++...   .+             +.....+
T Consensus        92 pL~~~~df~r~~G~~V~V~l~~-------~~~g~k~~~G~L~~~~~~~~~l~l~~---~~-------------~~~~~~~  148 (164)
T PRK14643         92 QIRSQEELVKALNQWVYVQLNN-------EIKKVKEFEGYVTKYNVNTNTFRFTF---FI-------------KGQKKKL  148 (164)
T ss_pred             CCCCHHHHHHhcCCeEEEEEec-------ccCCceEEEEEEEEEeCCcEEEEEEe---ec-------------cCcCcEE
Confidence            9999999999999999999999       77888999  9999999985533211   01             1001127


Q ss_pred             EeeccccceeEEEec
Q 030849          155 NTTFDSLRLVRLHSD  169 (170)
Q Consensus       155 ~ip~~~I~karL~i~  169 (170)
                      +|||++|++|||+++
T Consensus       149 ~ip~~~I~karl~~~  163 (164)
T PRK14643        149 DVKYEQIKFIRYAVR  163 (164)
T ss_pred             EEeHHHhhheEeccc
Confidence            899999999999876

>PRK14639 hypothetical protein; Provisional

Probab=100.00  E-value=8.9e-38  Score=242.57  Aligned_cols=127  Identities=14%  Similarity=0.260  Sum_probs=108.1

Q ss_pred             ccccccccCCccee-----------EEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCC
Q 030849           10 KHRNRVLNNKMPLW-----------LTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVV   78 (170)
Q Consensus        10 ~~~~~~~~~g~~~~-----------~lrv~~iD~~~gvtlddC~~vSr~is~~LD~~d~~~~i~~~Y~LEVSSPGieRpL   78 (170)
                      .-.|+++++||++|           +|||| ||+++|||+|||+.+||+|+++||++|   ||+++|+|||||||++|||
T Consensus         2 ~~ep~~~~~G~eLvdve~~~~~~~~~lrV~-Id~~~gv~iddC~~vSr~is~~LD~~d---~i~~~Y~LEVSSPGl~RpL   77 (140)
T PRK14639          2 NLEALCKECGVSFYDDELVSENGRKIYRVY-ITKEGGVNLDDCERLSELLSPIFDVEP---PVSGEYFLEVSSPGLERKL   77 (140)
T ss_pred             chhHhHHhCCCEEEEEEEEecCCCcEEEEE-EeCCCCCCHHHHHHHHHHHHHHhcccc---ccCCCeEEEEeCCCCCCcC
Confidence            34689999999987           47899 999999999999999999999999999   9999999999999999999


Q ss_pred             CChHHHHhcCCCeEEEEEEeccccCCCCCCCCceEEEEEEcCCcceEeeceeeeEEeecccCCCCCCcccccceeEEeec
Q 030849           79 RIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTF  158 (170)
Q Consensus        79 ~~~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f~L~~vd~~~~~~~~~~~~v~i~~~k~~Kgk~~~~~~~~~~v~ip~  158 (170)
                      ++++||+||+|+.|+|++.+       .....|  +|.++++++         +++...         .+.  ..++|||
T Consensus        78 ~~~~~f~r~~G~~v~v~l~~-------~~~~~G--~L~~~~~~~---------i~l~~~---------~~~--~~~~i~~  128 (140)
T PRK14639         78 SKIEHFAKSIGELVKITTNE-------KEKFEG--KIVSVDDEN---------ITLENL---------ENK--EKTTINF  128 (140)
T ss_pred             CCHHHHHHhCCCEEEEEECC-------CcEEEE--EEEEEeCCE---------EEEEEc---------cCC--cEEEEEh
Confidence            99999999999999999965       223334  999999998         444210         001  1268999


Q ss_pred             cccceeEEEec
Q 030849          159 DSLRLVRLHSD  169 (170)
Q Consensus       159 ~~I~karL~i~  169 (170)
                      ++|++|||+++
T Consensus       129 ~~I~ka~l~~~  139 (140)
T PRK14639        129 NDIKKAKTYVE  139 (140)
T ss_pred             HHeeeEEEEEe
Confidence            99999999986

>PRK14632 hypothetical protein; Provisional

Probab=100.00  E-value=1.5e-37  Score=248.67  Aligned_cols=136  Identities=20%  Similarity=0.278  Sum_probs=112.2

Q ss_pred             ccccccCCccee----------EEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCCh
Q 030849           12 RNRVLNNKMPLW----------LTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIP   81 (170)
Q Consensus        12 ~~~~~~~g~~~~----------~lrv~~iD~~~gvtlddC~~vSr~is~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~~   81 (170)
                      .|+++++||++|          +|||| ||+++|||||||+.+||+|+++||++|   +|+++|+|||||||++|||+++
T Consensus        15 ~pv~~~~G~eLvdve~~~~~~~~lrV~-ID~~~GV~ldDC~~vSr~is~~LD~~d---~i~~~Y~LEVSSPGldRpL~~~   90 (172)
T PRK14632         15 GPFLASLGLELWGIELSYGGRTVVRLF-VDGPEGVTIDQCAEVSRHVGLALEVED---VISSAYVLEVSSPGLERPFFRA   90 (172)
T ss_pred             HHHHHHCCCEEEEEEEEeCCCcEEEEE-EECCCCCCHHHHHHHHHHHHHHhcccc---cCCCCeEEEEeCCCCCCcCCCH
Confidence            578899999977          47899 999999999999999999999999999   9999999999999999999999


Q ss_pred             HHHHhcCCCeEEEEEEeccccCCCCCCCCceE--EEEEEcCCcceEeeceeeeEEeecccCCCCCCcccccceeEEeecc
Q 030849           82 LELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFD  159 (170)
Q Consensus        82 ~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f--~L~~vd~~~~~~~~~~~~v~i~~~k~~Kgk~~~~~~~~~~v~ip~~  159 (170)
                      +||+||+|+.|+|++.++.+    ..+++++|  +|.+++++.         ++++.. .+++++.    ....++|||+
T Consensus        91 ~~f~r~iG~~V~V~l~~~~~----~~~g~k~~~G~L~~v~~~~---------i~l~~~-~~~~~~~----~~~~~~i~~~  152 (172)
T PRK14632         91 EQMSPYVGRQIELTLIDPTP----EWPGRRKFRGELLAVEGDT---------VVLRPE-GAPAPEA----EEAVLRTSWQ  152 (172)
T ss_pred             HHHHHhCCCEEEEEEecccc----ccCCceEEEEEEEEEeCCE---------EEEEEc-CcccccC----CceeEEEEhH
Confidence            99999999999999999321    01478888  999999998         444421 1111111    1123799999


Q ss_pred             ccceeEEEec
Q 030849          160 SLRLVRLHSD  169 (170)
Q Consensus       160 ~I~karL~i~  169 (170)
                      +|++|||.++
T Consensus       153 ~I~ka~l~~~  162 (172)
T PRK14632        153 GVRKANLIHV  162 (172)
T ss_pred             HccEEEEEEE
Confidence            9999999875

>PRK14636 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-36  Score=244.40  Aligned_cols=127  Identities=22%  Similarity=0.322  Sum_probs=111.0

Q ss_pred             cccccccCCccee-----------EEEEEEEcCC--CCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCC
Q 030849           11 HRNRVLNNKMPLW-----------LTQLVACDRS--GSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERV   77 (170)
Q Consensus        11 ~~~~~~~~g~~~~-----------~lrv~~iD~~--~gvtlddC~~vSr~is~~LD~~d~~~~i~~~Y~LEVSSPGieRp   77 (170)
                      -.|+++++||++|           +|||| ||++  +|||+|||+.+||+||++||++|   +|+++|+|||||||++||
T Consensus        11 vep~~~~~GleLvdve~~~~~~~~~lrV~-ID~~~~ggV~lDDC~~vSr~Is~~LD~~d---~i~~~Y~LEVSSPGldRp   86 (176)
T PRK14636         11 IEPEAKALGLDLVRVAMFGGKSDPTLQIM-AERPDTRQLVIEDCAALSRRLSDVFDELD---PIEDAYRLEVSSPGIDRP   86 (176)
T ss_pred             HHHHHHHcCCEEEEEEEEcCCCCeEEEEE-EECCCCCCcCHHHHHHHHHHHHHHhccCc---CCCCCeEEEEeCCCCCCC
Confidence            3578999999977           47899 9986  46999999999999999999998   999999999999999999


Q ss_pred             CCChHHHHhcCCCeEEEEEEeccccCCCCCCCCceE--EEEEEcCCcceEeeceeeeEEeecccCCCCCCcccccceeEE
Q 030849           78 VRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLN  155 (170)
Q Consensus        78 L~~~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f--~L~~vd~~~~~~~~~~~~v~i~~~k~~Kgk~~~~~~~~~~v~  155 (170)
                      |++++||.||+|+.|+|+++.       +.+++++|  +|.+++++.         ++++.          .+..  .++
T Consensus        87 L~~~~df~r~~G~~V~V~l~~-------~~~g~k~~~G~L~~v~~~~---------v~l~~----------~~~~--~~~  138 (176)
T PRK14636         87 LTRPKDFADWAGHEARIALSE-------PLDGRKQFRGELKGIDGDT---------VTIAD----------NKAG--EVI  138 (176)
T ss_pred             CCCHHHHHHhCCCeEEEEEec-------ccCCeEEEEEEEEEEeCCE---------EEEEE----------cCCc--EEE
Confidence            999999999999999999999       77788888  999999998         44431          0111  268


Q ss_pred             eeccccceeEEEec
Q 030849          156 TTFDSLRLVRLHSD  169 (170)
Q Consensus       156 ip~~~I~karL~i~  169 (170)
                      |||++|++|||.++
T Consensus       139 i~~~~I~kA~l~~~  152 (176)
T PRK14636        139 LPFAAIESAKLILT  152 (176)
T ss_pred             EEhHHcceEEEecc
Confidence            99999999999875

>PRK14631 hypothetical protein; Provisional

Probab=100.00  E-value=1.2e-36  Score=243.87  Aligned_cols=126  Identities=22%  Similarity=0.325  Sum_probs=110.4

Q ss_pred             ccccccCCccee-----------EEEEEEEcCC------------------CCCCHHHHHHHHHHHHHhhhhhhhcCCCC
Q 030849           12 RNRVLNNKMPLW-----------LTQLVACDRS------------------GSPSMEDIEAFCTTYRARLDEAEIAKSIP   62 (170)
Q Consensus        12 ~~~~~~~g~~~~-----------~lrv~~iD~~------------------~gvtlddC~~vSr~is~~LD~~d~~~~i~   62 (170)
                      .|+++++||++|           +|||| ||++                  +|||+|||+.+||+|+++||++|   +|+
T Consensus        15 ~p~~~~~G~eLvdve~~~~~~~~~LrV~-ID~~~~~~~~~~~~~~~~~~~~~gvtiddC~~vSr~is~~LD~~d---~i~   90 (174)
T PRK14631         15 APAVAACGVDLWGIEFLPQGKRSLLRIY-IDRLVEENAEPVINEDGEVEQGRGIGVEDCVRVTQQVGAMLDVHD---PIS   90 (174)
T ss_pred             HHHHHHcCCEEEEEEEEeCCCceEEEEE-EecCcccccccccccccccccCCCcCHHHHHHHHHHHHHHhcccc---cCC
Confidence            578999999987           47899 9974                  68999999999999999999999   999


Q ss_pred             CCeEEEEecCCCCCCCCChHHHHhcCCCeEEEEEEeccccCCCCCCCCceE--EEEEEc--CCcceEeeceeeeEEeecc
Q 030849           63 ENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFD--METECCTWGLADVRINREK  138 (170)
Q Consensus        63 ~~Y~LEVSSPGieRpL~~~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f--~L~~vd--~~~~~~~~~~~~v~i~~~k  138 (170)
                      ++|+|||||||++|||++++||+||+|+.|+|++.+       +.+++++|  +|.+++  ++.         ++++-  
T Consensus        91 ~~Y~LEVSSPGldRpL~~~~df~r~~G~~V~V~l~~-------~~~~~k~~~G~L~~v~~~~~~---------v~l~~--  152 (174)
T PRK14631         91 GEYALEVSSPGWDRPFFQLEQLQGYIGQQVALRLIA-------AVENRRKFQAKLLAVDLENEE---------IQVEV--  152 (174)
T ss_pred             CCeEEEEeCCCCCCcCCCHHHHHHhCCCeEEEEEec-------ccCCceEEEEEEEEeecCCCE---------EEEEE--
Confidence            999999999999999999999999999999999999       77788999  999999  777         44441  


Q ss_pred             cCCCCCCcccccceeEEeeccccceeEEEec
Q 030849          139 AGKGRPLSKKQREWRLNTTFDSLRLVRLHSD  169 (170)
Q Consensus       139 ~~Kgk~~~~~~~~~~v~ip~~~I~karL~i~  169 (170)
                              ....  .+.|||++|+||||.++
T Consensus       153 --------~~~~--~~~i~~~~I~ka~L~~~  173 (174)
T PRK14631        153 --------EGKH--VLDIDSNNIDKANLIYQ  173 (174)
T ss_pred             --------cCCc--EEEEEhHHcceEEEeec
Confidence                    0011  26899999999999875

>PRK14638 hypothetical protein; Provisional

Probab=100.00  E-value=9.4e-37  Score=239.27  Aligned_cols=123  Identities=23%  Similarity=0.355  Sum_probs=105.9

Q ss_pred             ccccccCCccee-----------EEEEEEEcCCCC-CCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCC
Q 030849           12 RNRVLNNKMPLW-----------LTQLVACDRSGS-PSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVR   79 (170)
Q Consensus        12 ~~~~~~~g~~~~-----------~lrv~~iD~~~g-vtlddC~~vSr~is~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~   79 (170)
                      .|+++++||++|           .|||| ||+++| ||+|||+.+||+|+++||++|   +|+++|+|||||||++|||+
T Consensus        15 ~~i~~~~G~elvdve~~~~~~~~~lrV~-ID~~~G~v~lddC~~vSr~is~~LD~~d---~i~~~Y~LEVSSPGldRpL~   90 (150)
T PRK14638         15 ERIAEEQGLEIFDVQYRRESRGWVLRII-IDNPVGYVSVRDCELFSREIERFLDRED---LIEHSYTLEVSSPGLDRPLR   90 (150)
T ss_pred             HHHHHHcCCEEEEEEEEecCCCcEEEEE-EECCCCCcCHHHHHHHHHHHHHHhcccc---ccCCceEEEEeCCCCCCCCC
Confidence            578899999977           47899 999876 999999999999999999999   99999999999999999999


Q ss_pred             ChHHHHhcCCCeEEEEEEeccccCCCCCCCCceEEEEEEcCCcceEeeceeeeEEeecccCCCCCCcccccceeEEeecc
Q 030849           80 IPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFD  159 (170)
Q Consensus        80 ~~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f~L~~vd~~~~~~~~~~~~v~i~~~k~~Kgk~~~~~~~~~~v~ip~~  159 (170)
                      +++||+||+|+.|+|++.+       .....|  +|.++++++         ++++.          . ..  .++|||+
T Consensus        91 ~~~~f~r~~G~~v~V~~~~-------~k~~~G--~L~~~~~~~---------i~l~~----------~-~~--~~~i~~~  139 (150)
T PRK14638         91 GPKDYVRFTGKLAKIVTKD-------GKTFIG--RIESFVDGT---------ITISD----------E-KE--KYEINID  139 (150)
T ss_pred             CHHHHHHhCCCEEEEEECC-------CcEEEE--EEEEEeCCE---------EEEEE----------C-Cc--EEEEEhH
Confidence            9999999999999999964       222333  999999998         55541          1 11  2789999


Q ss_pred             ccceeEEEec
Q 030849          160 SLRLVRLHSD  169 (170)
Q Consensus       160 ~I~karL~i~  169 (170)
                      +|++|||.++
T Consensus       140 ~I~~a~l~~e  149 (150)
T PRK14638        140 DVKRANLEVE  149 (150)
T ss_pred             HcceEEEeee
Confidence            9999999876

>PRK00092 ribosome maturation protein RimP; Reviewed

Probab=100.00  E-value=2.7e-36  Score=237.02  Aligned_cols=127  Identities=28%  Similarity=0.403  Sum_probs=111.5

Q ss_pred             ccccccCCcceeE-----------EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCC
Q 030849           12 RNRVLNNKMPLWL-----------TQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRI   80 (170)
Q Consensus        12 ~~~~~~~g~~~~~-----------lrv~~iD~~~gvtlddC~~vSr~is~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~   80 (170)
                      .+.++++||++|.           |||+ ||+++|+|+|||+.+||+|+++||+.|   +|+++|+|||||||++|||++
T Consensus        14 ~~~~~~~g~~l~dv~~~~~~~~~~l~V~-Id~~~gv~iddc~~~Sr~is~~LD~~d---~i~~~Y~LEVSSPGi~RpL~~   89 (154)
T PRK00092         14 EPVVEALGYELVDVEYVKEGRDSTLRIY-IDKEGGIDLDDCEEVSRQISAVLDVED---PIPGAYTLEVSSPGLDRPLKK   89 (154)
T ss_pred             HHHHHHCCCEEEEEEEEecCCCcEEEEE-EECCCCCCHHHHHHHHHHHHHHhcccc---CCCCCeEEEEeCCCCCCcCCC
Confidence            5788999999874           6888 999999999999999999999999998   999999999999999999999


Q ss_pred             hHHHHhcCCCeEEEEEEeccccCCCCCCCCceE--EEEEEcCCcceEeeceeeeEEeecccCCCCCCcccccceeEEeec
Q 030849           81 PLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTF  158 (170)
Q Consensus        81 ~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f--~L~~vd~~~~~~~~~~~~v~i~~~k~~Kgk~~~~~~~~~~v~ip~  158 (170)
                      ++||+||+|+.|+|++++       +.++.+.|  +|.++++++         ++++.    ++++       +.++|||
T Consensus        90 ~~~f~r~~G~~v~V~~~~-------~~~~~~~~~G~L~~~~~~~---------i~l~~----~~~~-------~~~~i~~  142 (154)
T PRK00092         90 ARDFRRFIGREVKVKLYE-------PIDGRKKFQGILLAVDGET---------VTLEV----EGKE-------KEVEIPL  142 (154)
T ss_pred             HHHHHHhCCCeEEEEEEc-------ccCCceEEEEEEEEeeCCE---------EEEEE----CCCe-------EEEEEEH
Confidence            999999999999999999       66677777  999999998         44441    1111       1278999


Q ss_pred             cccceeEEEec
Q 030849          159 DSLRLVRLHSD  169 (170)
Q Consensus       159 ~~I~karL~i~  169 (170)
                      ++|++|+|.++
T Consensus       143 ~~I~~a~l~~e  153 (154)
T PRK00092        143 DNIAKARLVVE  153 (154)
T ss_pred             HHcceEEEeee
Confidence            99999999886

>PRK14630 hypothetical protein; Provisional

Probab=100.00  E-value=7.4e-36  Score=232.58  Aligned_cols=118  Identities=15%  Similarity=0.264  Sum_probs=103.3

Q ss_pred             ccccccCCccee-----------EEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCC
Q 030849           12 RNRVLNNKMPLW-----------LTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRI   80 (170)
Q Consensus        12 ~~~~~~~g~~~~-----------~lrv~~iD~~~gvtlddC~~vSr~is~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~   80 (170)
                      .|.++++||++|           +|||| ||+++|||+|||+.+||+|++.||  +   +|+++|+|||||||++|||++
T Consensus        15 ~~~~~~~G~eLvdve~~~~~~~~~lrV~-Id~~~gV~idDC~~vSr~i~~~ld--~---~i~~~Y~LEVSSPGldRpL~~   88 (143)
T PRK14630         15 KNVTDRLGIEIIEINTFRNRNEGKIQIV-LYKKDSFGVDTLCDLHKMILLILE--A---VLKYNFSLEISTPGINRKIKS   88 (143)
T ss_pred             HHHHHHcCCEEEEEEEEecCCCcEEEEE-EECCCCCCHHHHHHHHHHHHHHhc--c---cCCCCeEEEEeCCCCCCcCCC
Confidence            578999999987           47899 999999999999999999999996  5   899999999999999999999


Q ss_pred             hHHHHhcCCCeEEEEEEeccccCCCCCCCCceEEEEEEcCCcceEeeceeeeEEeecccCCCCCCcccccceeEEeeccc
Q 030849           81 PLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDS  160 (170)
Q Consensus        81 ~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f~L~~vd~~~~~~~~~~~~v~i~~~k~~Kgk~~~~~~~~~~v~ip~~~  160 (170)
                      ++||+||+|+.|+|++.+       +. ..|  +|.++++++         ++++           ..+.  .+.|||++
T Consensus        89 ~~df~r~~G~~v~V~l~~-------~~-~~G--~L~~~~d~~---------i~l~-----------~~~~--~~~i~~~~  136 (143)
T PRK14630         89 DREFKIFEGKKIKLMLDN-------DF-EEG--FILEAKADS---------FIFK-----------TDSK--EVNVLYSD  136 (143)
T ss_pred             HHHHHHhCCCEEEEEEcC-------cc-eEE--EEEEEeCCE---------EEEE-----------ECCE--EEEEEhHh
Confidence            999999999999999977       44 366  899999999         5554           1111  27899999


Q ss_pred             cceeEEE
Q 030849          161 LRLVRLH  167 (170)
Q Consensus       161 I~karL~  167 (170)
                      |++|||.
T Consensus       137 I~ka~lv  143 (143)
T PRK14630        137 VKKAKLS  143 (143)
T ss_pred             cceEEEC
Confidence            9999984

>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes []

Probab=100.00  E-value=6.9e-36  Score=231.09  Aligned_cols=126  Identities=29%  Similarity=0.491  Sum_probs=87.1

Q ss_pred             ccccccCCccee-----------EEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCC
Q 030849           12 RNRVLNNKMPLW-----------LTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRI   80 (170)
Q Consensus        12 ~~~~~~~g~~~~-----------~lrv~~iD~~~gvtlddC~~vSr~is~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~   80 (170)
                      .|+++++||++|           .|||+ ||+++|||+|||+++||+|++.||+++   +|+++|+|||||||++|||++
T Consensus         3 ~~~~~~~g~~l~~v~~~~~~~~~~l~V~-id~~~gv~lddc~~~sr~i~~~LD~~d---~i~~~y~LEVSSPG~~r~L~~   78 (141)
T PF02576_consen    3 EPLLEELGLELVDVEVVKEGGNRILRVF-IDKDGGVSLDDCEKVSRAISALLDAED---PIPEDYTLEVSSPGIDRPLKS   78 (141)
T ss_dssp             HHHH-S-SSEEEEEEEEEETTEEEEEEE-EE-SS---HHHHHHHHHHHGGGTTTS-------S-EEEEEE--SSSS--SS
T ss_pred             ccchhhcCCEEEEEEEEECCCCEEEEEE-EEeCCCCCHHHHHHHHHHHHHHHcccc---ccCcceEEEEeCCCCCCcCCC
Confidence            478899999977           47899 999999999999999999999999998   999999999999999999999


Q ss_pred             hHHHHhcCCCeEEEEEEeccccCCCCCCCCceE--EEEEEcCCcceEeeceeeeEEeecccCCCCCCcccccceeEEeec
Q 030849           81 PLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTF  158 (170)
Q Consensus        81 ~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f--~L~~vd~~~~~~~~~~~~v~i~~~k~~Kgk~~~~~~~~~~v~ip~  158 (170)
                      ++||.+|+|+.|+|++.+       +.++++.|  +|.+++++++++++.           .|+++       ..++|||
T Consensus        79 ~~~~~~~iG~~v~v~~~~-------~~~~~~~~~G~L~~~~~~~i~l~~~-----------~~~~~-------~~~~I~~  133 (141)
T PF02576_consen   79 PRDFERFIGRKVKVKLKQ-------PVNGRKEFEGKLLEVDEDEITLEVE-----------GKGKK-------KEVEIPF  133 (141)
T ss_dssp             HHHHHHH-SEEEEEE-SS--------SSS-SEEEEEEEEEETTEEEEEEE------------SS-E-------EEEEE-S
T ss_pred             HHHHHHhcCCeEEEEEec-------cCCCcEEEEEEEEEEeCCEEEEEEC-----------Cccce-------EEEEEEH
Confidence            999999999999999998       66777787  999999999443221           11111       2379999


Q ss_pred             cccceeEE
Q 030849          159 DSLRLVRL  166 (170)
Q Consensus       159 ~~I~karL  166 (170)
                      ++|++|||
T Consensus       134 ~~I~ka~L  141 (141)
T PF02576_consen  134 SDIKKARL  141 (141)
T ss_dssp             S--SS-EE
T ss_pred             HHCceEeC
Confidence            99999997

; PDB: 1IB8_A.

>PRK14641 hypothetical protein; Provisional

Probab=100.00  E-value=2.9e-35  Score=235.55  Aligned_cols=130  Identities=20%  Similarity=0.294  Sum_probs=107.1

Q ss_pred             ccCCccee-----------EEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhhhhcCCCC----CCeEEEEecCCCCCCCCC
Q 030849           16 LNNKMPLW-----------LTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIP----ENTSLEVSSPGVERVVRI   80 (170)
Q Consensus        16 ~~~g~~~~-----------~lrv~~iD~~~gvtlddC~~vSr~is~~LD~~d~~~~i~----~~Y~LEVSSPGieRpL~~   80 (170)
                      +++||++|           +|||+ ||+++|||||||+.+||+||++||++|   +++    ++|+|||||||++|||++
T Consensus        20 ~~~G~eLvdve~~~~~~~~~lrV~-ID~~~gv~lDdC~~vSr~Is~~LD~~d---~i~~~~~~~Y~LEVSSPGldRpL~~   95 (173)
T PRK14641         20 KGEGVYLVSMTVKGSGKGRKIEVL-LDADTGIRIDQCAFFSRRIRERLEEDE---ELLGLVGEDFDLMVSSPGLGEPIIL   95 (173)
T ss_pred             ccCCeEEEEEEEEeCCCCcEEEEE-EeCCCCCCHHHHHHHHHHHHHHhCccc---ccccCCCCCeEEEEeCCCCCCcCCC
Confidence            79999977           47899 999999999999999999999999988   554    799999999999999999


Q ss_pred             hHHHHhcCCCeEEEEEEeccccCCCCCCCCceE--EEEEEc-----CCcceEeeceeeeEEeecccC-CCCCCcccccce
Q 030849           81 PLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFD-----METECCTWGLADVRINREKAG-KGRPLSKKQREW  152 (170)
Q Consensus        81 ~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f--~L~~vd-----~~~~~~~~~~~~v~i~~~k~~-Kgk~~~~~~~~~  152 (170)
                      ++||+||+|+.|+|++.+       +.++++.|  +|.+++     ++.         +++...+.+ |+++  ..  ..
T Consensus        96 ~~~f~r~~G~~V~V~l~~-------~~~~~~~~~G~L~~~~~~~~~~~~---------v~~~~~~~~~~~~~--~~--~~  155 (173)
T PRK14641         96 PRQYGRHVGRLLRVTYRD-------EEGSEHEVTGHLQEVSLTEGEGAS---------IVLKPEQKKKKGKQ--EE--TE  155 (173)
T ss_pred             HHHHHHhCCCEEEEEEec-------ccCCeEEEEEEEEeeecccCCCCc---------EEEEeccccccccC--CC--Cc
Confidence            999999999999999999       66777788  999986     333         444432222 2221  11  22


Q ss_pred             eEEeeccccceeEEEec
Q 030849          153 RLNTTFDSLRLVRLHSD  169 (170)
Q Consensus       153 ~v~ip~~~I~karL~i~  169 (170)
                      .+++||++|++|++.+|
T Consensus       156 ~~~v~~~~v~~A~vevE  172 (173)
T PRK14641        156 NITLELDAVIRAVPEAE  172 (173)
T ss_pred             eEEEEhHHccceeeeee
Confidence            47999999999999887

>PRK02001 hypothetical protein; Validated

Probab=100.00  E-value=9.7e-35  Score=228.35  Aligned_cols=133  Identities=20%  Similarity=0.219  Sum_probs=104.1

Q ss_pred             ccccccCCcceeE--------EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCChHH
Q 030849           12 RNRVLNNKMPLWL--------TQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLE   83 (170)
Q Consensus        12 ~~~~~~~g~~~~~--------lrv~~iD~~~gvtlddC~~vSr~is~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~~~~   83 (170)
                      .++++++||++|.        |||+ ||+++|||+|||+.+||+|+++||+.+      ++|+|||||||++|||++++|
T Consensus        12 e~~~~~~g~eLvdv~~~~~~~lrV~-ID~~~Gv~lddC~~vSr~is~~LD~~d------~~Y~LEVSSPGldRpL~~~~~   84 (152)
T PRK02001         12 EELLEGPELFLVDLTISPDNKIVVE-IDGDEGVWIEDCVELSRAIEHNLDREE------EDFELEVGSAGLTSPLKVPRQ   84 (152)
T ss_pred             HhhhhhcCcEEEEEEEEcCCEEEEE-EECCCCCCHHHHHHHHHHHHHHhcCCC------CCeEEEEeCCCCCCcCCCHHH
Confidence            5788999999884        7899 999999999999999999999999775      899999999999999999999


Q ss_pred             HHhcCCCeEEEEEEeccccCCCCCCCCceEEEEEEcCCcceEeeceeeeEEeecccCCCCCCcccccceeEEeeccccce
Q 030849           84 LERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRL  163 (170)
Q Consensus        84 f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f~L~~vd~~~~~~~~~~~~v~i~~~k~~Kgk~~~~~~~~~~v~ip~~~I~k  163 (170)
                      |+||+|+.|+|++.+       .....|  +|.+++++++++...-.    ...+.+||++.  +  ...++|||++|++
T Consensus        85 f~r~~G~~v~V~l~~-------~~~~~G--~L~~~~~~~i~l~~~~~----~~~~~~k~~~~--~--~~~~~i~~~~I~k  147 (152)
T PRK02001         85 YKKNIGRELEVLTKN-------GKKIEG--ELKSADENDITLEVKAR----EPKEGGKGKVT--V--EKEETITYDDIKE  147 (152)
T ss_pred             HHHhCCCEEEEEECC-------CCEEEE--EEEEEeCCEEEEEEccc----ccccccccccc--c--ceeEEEEhHheee
Confidence            999999999999954       222333  99999999844321100    00011233322  1  1237999999999


Q ss_pred             eEEEe
Q 030849          164 VRLHS  168 (170)
Q Consensus       164 arL~i  168 (170)
                      |+|.+
T Consensus       148 a~l~~  152 (152)
T PRK02001        148 AKVII  152 (152)
T ss_pred             EEEeC
Confidence            99975

>PRK14637 hypothetical protein; Provisional

Probab=100.00  E-value=2.9e-34  Score=225.48  Aligned_cols=122  Identities=20%  Similarity=0.243  Sum_probs=101.9

Q ss_pred             ccccccCCccee-----------EEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCC
Q 030849           12 RNRVLNNKMPLW-----------LTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRI   80 (170)
Q Consensus        12 ~~~~~~~g~~~~-----------~lrv~~iD~~~gvtlddC~~vSr~is~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~   80 (170)
                      .|+++++||++|           +|||+ ||+++|||+|||+++||+|+++||+.+   + +++|+|||||||++|||++
T Consensus        15 ~p~~~~~g~eLvdve~~~~~~~~~lrV~-ID~~~gV~iddC~~vSr~Is~~LD~~~---~-~~~y~LEVSSPGldRpL~~   89 (151)
T PRK14637         15 EPVVEGLGCKLVDLSRRVQQAQGRVRAV-IYSAGGVGLDDCARVHRILVPRLEALG---G-VRDVFLEVSSPGIERVIKN   89 (151)
T ss_pred             HHHHHhcCCEEEEEEEEecCCCcEEEEE-EECCCCCCHHHHHHHHHHHHHHhcccc---c-ccCcEEEEeCCCCCCCCCC
Confidence            578899999977           47899 999999999999999999999999754   3 5789999999999999999


Q ss_pred             hHHHHhcCCCeEEEEEEeccccCCCCCCC-CceEEEEEEcCCcceEeeceeeeEEeecccCCCCCCcccccceeEEeecc
Q 030849           81 PLELERFKDRAMYVKYVGETVTTGSPSES-DGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFD  159 (170)
Q Consensus        81 ~~~f~r~~G~~v~V~l~~~~~~~~~~~~~-~~~f~L~~vd~~~~~~~~~~~~v~i~~~k~~Kgk~~~~~~~~~~v~ip~~  159 (170)
                      ++||+||+|+.|+|++..       .... .|  +|.+++++.         ++++.           ...  .+.|||+
T Consensus        90 ~~~f~r~~G~~V~V~l~~-------~~~~~~G--~L~~~~d~~---------v~l~~-----------~~~--~~~i~~~  138 (151)
T PRK14637         90 AAEFSIFVGETVKVWFEC-------TGQWQVG--TIAEADETC---------LVLTS-----------DGV--PVTIPYV  138 (151)
T ss_pred             HHHHHHhCCCEEEEEECC-------CCcEEEE--EEEEEeCCE---------EEEEE-----------CCE--EEEEEHH
Confidence            999999999999999822       1122 34  899999998         55541           111  2789999


Q ss_pred             ccceeEEEec
Q 030849          160 SLRLVRLHSD  169 (170)
Q Consensus       160 ~I~karL~i~  169 (170)
                      +|++|||.+.
T Consensus       139 ~I~ka~L~~~  148 (151)
T PRK14637        139 QITKAQLHPA  148 (151)
T ss_pred             HeeeEEEEEE
Confidence            9999999875

>PRK14642 hypothetical protein; Provisional

Probab=100.00  E-value=4.2e-34  Score=232.57  Aligned_cols=145  Identities=23%  Similarity=0.235  Sum_probs=111.8

Q ss_pred             ccccccCCcceeE--------EEEEEEcC-------------CCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEe
Q 030849           12 RNRVLNNKMPLWL--------TQLVACDR-------------SGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVS   70 (170)
Q Consensus        12 ~~~~~~~g~~~~~--------lrv~~iD~-------------~~gvtlddC~~vSr~is~~LD~~d~~~~i~~~Y~LEVS   70 (170)
                      .++++++||++|.        |||| ||+             ++|||+|||+.+||+|+++||+++   .  +.|+||||
T Consensus         8 epvv~~lG~eLvdve~~~~~~LrV~-ID~~~~~~~~~~~~~~~~gVtidDC~~vSR~Is~~LDve~---~--~y~~LEVS   81 (197)
T PRK14642          8 EQTVTGLGYDLVEIERSAGGLLRVT-IDLPWVPPTEGAPVGPEQFVTVEDCEKVTRQLQFALEVDG---V--DYKRLEVS   81 (197)
T ss_pred             HHHHHHcCCEEEEEEEecCCEEEEE-EecCccccccccccccCCCccHHHHHHHHHHHHHHhcccC---c--cccEEEEe
Confidence            4788999999884        7899 997             467999999999999999999886   2  33479999


Q ss_pred             cCCCCCCCCChHHHHhcCCCeEEEEEEecccc--CCCCCCCCceE--EEEEEcCCcceEeeceeeeEEeeccc---CCCC
Q 030849           71 SPGVERVVRIPLELERFKDRAMYVKYVGETVT--TGSPSESDGVF--RLISFDMETECCTWGLADVRINREKA---GKGR  143 (170)
Q Consensus        71 SPGieRpL~~~~~f~r~~G~~v~V~l~~~~~~--~~~~~~~~~~f--~L~~vd~~~~~~~~~~~~v~i~~~k~---~Kgk  143 (170)
                      |||++|||++++||.||+|+.|+|+++.+.++  .++...++++|  +|.++++++++++|.-++.   .++.   +|||
T Consensus        82 SPGldRPLk~~~df~rfiG~~V~V~l~~pi~~~~~~~~~~~rk~f~G~L~~~~~~~i~l~~~~~~~---~k~g~~~~k~~  158 (197)
T PRK14642         82 SPGIDRPLRHEQDFERFAGEVIDITLKAPIGAAAGGQVSANRKKFRGTLERAESGGWQIVWSDEPP---VKPGQRVSKKR  158 (197)
T ss_pred             CCCCCCCCCCHHHHHHhCCCeEEEEEeccccccccccccCCceEEEEEEEEEcCCEEEEEEeeccc---CCCcccccccc
Confidence            99999999999999999999999999983321  00011268888  9999999998877764321   0111   2444


Q ss_pred             CCcccccceeEEeeccccceeEEEe
Q 030849          144 PLSKKQREWRLNTTFDSLRLVRLHS  168 (170)
Q Consensus       144 ~~~~~~~~~~v~ip~~~I~karL~i  168 (170)
                      .+...   ..+.|+|++|++|||.+
T Consensus       159 ~~~~~---~~~~~~~~eik~a~l~p  180 (197)
T PRK14642        159 VPAPL---QALGFTLDELREARLAP  180 (197)
T ss_pred             ccccc---eeEEeehhheeeEEEEE
Confidence            32222   23799999999999986

>PRK14635 hypothetical protein; Provisional

Probab=100.00  E-value=2.4e-33  Score=222.32  Aligned_cols=132  Identities=22%  Similarity=0.318  Sum_probs=100.6

Q ss_pred             cccccCCccee-----------EEEEEEEcC----CCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCC
Q 030849           13 NRVLNNKMPLW-----------LTQLVACDR----SGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERV   77 (170)
Q Consensus        13 ~~~~~~g~~~~-----------~lrv~~iD~----~~gvtlddC~~vSr~is~~LD~~d~~~~i~~~Y~LEVSSPGieRp   77 (170)
                      +.+ ++||++|           +|||+ ||+    +||||||||+++||+|+++||+.|   ++ ++|+|||||||++||
T Consensus        14 ~~~-~~g~el~dve~~~~~~~~~lrV~-ID~~~~~~~gv~lddC~~vSr~is~~LD~~d---~~-~~Y~LEVSSPGldRp   87 (162)
T PRK14635         14 RVL-ALPVKLYSLKVNQRPNHSLIEVV-LDNLEHPYGSVSLLECEQVSRKLKEELERIS---PD-LDFTLKVSSAGAERK   87 (162)
T ss_pred             HHH-CCCCEEEEEEEEecCCCcEEEEE-EecCCCCCCCcCHHHHHHHHHHHHHHhCCCC---CC-CCeEEEEcCCCCCCc
Confidence            445 4699976           47899 997    588999999999999999999988   75 899999999999999


Q ss_pred             CCChHHHHhcCCCeEEEEEEeccccCCCCCC-CCceEEEEEEcCCcceEeeceeeeEEeecccCCCCCCcccccceeEEe
Q 030849           78 VRIPLELERFKDRAMYVKYVGETVTTGSPSE-SDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNT  156 (170)
Q Consensus        78 L~~~~~f~r~~G~~v~V~l~~~~~~~~~~~~-~~~~f~L~~vd~~~~~~~~~~~~v~i~~~k~~Kgk~~~~~~~~~~v~i  156 (170)
                      |++++||.||+|+.|+|++..+...   ... +.+  +|.+++++++         +++.. . |+++. ....  .++|
T Consensus        88 L~~~~~~~r~~G~~v~v~~~~~~~~---~~~g~~g--~L~~~~~~~v---------~l~~~-~-k~~~~-~~~~--~~~i  148 (162)
T PRK14635         88 LRLPEDLDRFRGIPVRLVFRSEESE---KWQEGIF--RLVNRDGDQV---------ELEKF-Q-KGKKS-KVKK--QTTL  148 (162)
T ss_pred             CCCHHHHHHhCCCEEEEEEecCCCc---EEEecce--EEEEEcCCEE---------EEEEe-c-ccccc-cCCe--EEEE
Confidence            9999999999999999998652100   111 112  6999999984         33311 1 11111 1122  2799


Q ss_pred             eccccceeEEEec
Q 030849          157 TFDSLRLVRLHSD  169 (170)
Q Consensus       157 p~~~I~karL~i~  169 (170)
                      ||++|++|||.++
T Consensus       149 p~~~I~ka~l~~e  161 (162)
T PRK14635        149 NLKDILKGNLYVE  161 (162)
T ss_pred             EhHHeeeeEEEEe
Confidence            9999999999986

>PRK14644 hypothetical protein; Provisional

Probab=100.00  E-value=5.3e-33  Score=214.96  Aligned_cols=119  Identities=17%  Similarity=0.222  Sum_probs=102.1

Q ss_pred             ccccccCCccee-----------EEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCC
Q 030849           12 RNRVLNNKMPLW-----------LTQLVACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRI   80 (170)
Q Consensus        12 ~~~~~~~g~~~~-----------~lrv~~iD~~~gvtlddC~~vSr~is~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~   80 (170)
                      .|+++++||++|           +|||| ||++   ++|||+.+||+|+++||+.|   +++++|.|||||||++|||++
T Consensus         5 e~~~~~~g~el~dve~~~~~~~~~LrV~-Idk~---~iddC~~vSr~is~~LD~~d---~i~~~Y~LEVSSPGldRpL~~   77 (136)
T PRK14644          5 EKLLEKFGNKINEIKIVKEDGDLFLEVI-LNSR---DLKDIEELTKEISDFIDNLS---VEFDFDSLDISSPGFDMDYET   77 (136)
T ss_pred             hhhHHhcCCEEEEEEEEeCCCCEEEEEE-ECCC---CHHHHHHHHHHHHHHhcccc---CCCCCeEEEEECCCCCCCCCH
Confidence            588999999977           47899 9985   79999999999999999999   999999999999999999998


Q ss_pred             hHHHHhcCCCeEEEEEEeccccCCCCCCCCceE--EEEEEcCCcceEeeceeeeEEeecccCCCCCCcccccceeEEeec
Q 030849           81 PLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTF  158 (170)
Q Consensus        81 ~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f--~L~~vd~~~~~~~~~~~~v~i~~~k~~Kgk~~~~~~~~~~v~ip~  158 (170)
                       +||.||+|+.|+|++++       ++++++.|  +|.++++++++++|..           ||       ....++|++
T Consensus        78 -~~f~r~~G~~v~V~l~~-------~~~~~~~~~G~L~~v~~~~i~l~~~~-----------k~-------~~~~i~~~~  131 (136)
T PRK14644         78 -DELENHIGEIIDVSLNK-------EVNKTDFITGELLENNPETITLKWNC-----------KG-------QFRKVEINK  131 (136)
T ss_pred             -HHHHHhCCCeEEEEEcc-------CcCCeEEEEEEEEEEeCCEEEEEEec-----------CC-------cEEEEEECH
Confidence             69999999999999999       77788888  9999999995544321           11       122378999


Q ss_pred             cccce
Q 030849          159 DSLRL  163 (170)
Q Consensus       159 ~~I~k  163 (170)
                      ++|++
T Consensus       132 ~~i~~  136 (136)
T PRK14644        132 ENIKK  136 (136)
T ss_pred             HHhcC
Confidence            99874

>PRK14645 hypothetical protein; Provisional

Probab=100.00  E-value=9.5e-33  Score=217.48  Aligned_cols=117  Identities=20%  Similarity=0.238  Sum_probs=97.6

Q ss_pred             ccccccCCccee-----------EEEEEEEcCC--CCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCC
Q 030849           12 RNRVLNNKMPLW-----------LTQLVACDRS--GSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVV   78 (170)
Q Consensus        12 ~~~~~~~g~~~~-----------~lrv~~iD~~--~gvtlddC~~vSr~is~~LD~~d~~~~i~~~Y~LEVSSPGieRpL   78 (170)
                      .++++++||++|           +|||| ||++  +|||+|||+.+||+|+++||++|   +|+++|+|||||||++|||
T Consensus        16 ~~~~~~~G~elvdve~~~~~~~~ilrV~-ID~~~~~~v~lddC~~vSr~is~~LD~~d---~i~~~Y~LEVSSPGldRpL   91 (154)
T PRK14645         16 EGALEPLGYEVLEVQVQRSGGKRIVLVR-IDRKDEQPVTVEDLERASRALEAELDRLD---PIEGEYRLEVESPGPKRPL   91 (154)
T ss_pred             HHHHHHcCCEEEEEEEEeCCCCeEEEEE-EECCCCCCcCHHHHHHHHHHHHHHhcccc---cCCCceEEEEeCCCCCCCC
Confidence            578899999977           47899 9974  45999999999999999999999   9999999999999999999


Q ss_pred             CChHHHHhcCCCeEEEEEEeccccCCCCCCCCceEEEEEEcCCcceEeeceeeeEEeecccCCCCCCcccccceeEEeec
Q 030849           79 RIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTF  158 (170)
Q Consensus        79 ~~~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f~L~~vd~~~~~~~~~~~~v~i~~~k~~Kgk~~~~~~~~~~v~ip~  158 (170)
                      ++++||.||+|+.|+|++ .       .....|  +|.+++++.         |+++           .++.  .++|||
T Consensus        92 ~~~~df~r~~G~~v~v~~-~-------~k~~~G--~L~~~~d~~---------i~l~-----------~~~~--~~~i~~  139 (154)
T PRK14645         92 FTARHFERFAGLKAKVRG-P-------GENFTG--RIKAVSGDQ---------VTFD-----------VGGE--DRTLRI  139 (154)
T ss_pred             CCHHHHHHhCCCEEEEEc-C-------CeEEEE--EEEEEeCCE---------EEEE-----------ECCe--EEEEEH
Confidence            999999999999999975 2       112233  999999998         5444           1122  278999


Q ss_pred             ccccee
Q 030849          159 DSLRLV  164 (170)
Q Consensus       159 ~~I~ka  164 (170)
                      ++|+++
T Consensus       140 ~~I~~~  145 (154)
T PRK14645        140 GTFQAN  145 (154)
T ss_pred             HHhhhh
Confidence            999755

>cd01734 YlxS_C YxlS is a Bacillus subtilis gene of unknown function with two domains that each have an alpha/beta fold

Probab=99.89  E-value=7.5e-23  Score=145.65  Aligned_cols=80  Identities=30%  Similarity=0.414  Sum_probs=66.5

Q ss_pred             eEEEEecCCCCCCCCChHHHHhcCCCeEEEEEEeccccCCCCCCCCceE--EEEEEcCCcceEeeceeeeEEeecccCCC
Q 030849           65 TSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKG  142 (170)
Q Consensus        65 Y~LEVSSPGieRpL~~~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f--~L~~vd~~~~~~~~~~~~v~i~~~k~~Kg  142 (170)
                      |+|||||||++|||++++||+||+|+.|+|++..       +++++++|  .|.++++++         ++++..  .|+
T Consensus         1 Y~LEVSSPGl~RpL~~~~~~~r~~G~~v~v~~~~-------~~~~~~~~~G~L~~~~~~~---------v~l~~~--~~~   62 (83)
T cd01734           1 YFLEVSSPGAERPLKKEADFERAVGKYVHVKLYQ-------PIDGQKEFEGTLLGVDDDT---------VTLEVD--IKT   62 (83)
T ss_pred             CEEEEcCCCCCCcCCCHHHHHHhCCCEEEEEEEc-------ccCCeEEEEEEEEeEeCCE---------EEEEEe--cCC
Confidence            8999999999999999999999999999999998       66778888  999999998         444321  111


Q ss_pred             CCCcccccceeEEeeccccceeEEEec
Q 030849          143 RPLSKKQREWRLNTTFDSLRLVRLHSD  169 (170)
Q Consensus       143 k~~~~~~~~~~v~ip~~~I~karL~i~  169 (170)
                      +       ...++|||++|++|+|.++
T Consensus        63 ~-------~~~~~i~~~~I~ka~l~~~   82 (83)
T cd01734          63 R-------GKTVEIPLDKIAKARLAPE   82 (83)
T ss_pred             C-------CeEEEEEhHHeeEEEEEEE
Confidence            1       1237999999999999886

The N-terminal domain is composed of two alpha-helices and a three-stranded beta-sheet, while the C-terminal domain is composed of one alpha-helix and a five-stranded beta-sheet. This CD represents the C-terminal domain which has a fold similar to the Sm fold of proteins like Sm-D3.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	170
1ib8_A	164	Conserved protein SP14.3; nucleic acid binding pro	3e-06

>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1 Length = 164

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 31  DRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 90
           D+    ++ D           LD  +     PE   LE++SPG+ER ++    +     +
Sbjct: 47  DKPEGITLNDTADLTEMISPVLDTIKPD-PFPEQYFLEITSPGLERPLKTKDAVAGAVGK 105

Query: 91  AMYVK 95
            ++V 
Sbjct: 106 YIHVG 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	170
1ib8_A	164	Conserved protein SP14.3; nucleic acid binding pro	100.0

>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1

Probab=100.00  E-value=9.5e-39  Score=252.44  Aligned_cols=128  Identities=18%  Similarity=0.291  Sum_probs=111.6

Q ss_pred             ccccccCCccee-----------EEEEEEEcCCCCCCHHHHHHHHHHHHHhhh--hhhhcCCCCCCeEEEEecCCCCCCC
Q 030849           12 RNRVLNNKMPLW-----------LTQLVACDRSGSPSMEDIEAFCTTYRARLD--EAEIAKSIPENTSLEVSSPGVERVV   78 (170)
Q Consensus        12 ~~~~~~~g~~~~-----------~lrv~~iD~~~gvtlddC~~vSr~is~~LD--~~d~~~~i~~~Y~LEVSSPGieRpL   78 (170)
                      .|++++ ||++|           +|||| ||+++|||+|||+.+||+||+.||  ++|   ||+++|+|||||||++|||
T Consensus        19 ~p~~~~-g~eLvdve~~~~g~~~~LrV~-ID~~~gi~lddC~~vSr~is~~LD~~~~d---~i~~~Y~LEVSSPGldRpL   93 (164)
T 1ib8_A           19 EPVIEA-PFELVDIEYGKIGSDMILSIF-VDKPEGITLNDTADLTEMISPVLDTIKPD---PFPEQYFLEITSPGLERPL   93 (164)
T ss_dssp             HHHHCS-SSEEEEEEEEEETTEEEEEEE-EECSSCCCHHHHHHHHHHHGGGTTTCCSC---CCCSCEEEEEECCSSSSCC
T ss_pred             HHHHcC-CcEEEEEEEEecCCCcEEEEE-EECCCCCCHHHHHHHHHHHHHHhcccccc---CCCCCeEEEEeCCCCCCCC
Confidence            477888 99976           47899 999999999999999999999999  888   9999999999999999999


Q ss_pred             CChHHHHhcCCCeEEEEEEeccccCCCCCCCCceE--EEEEEcCCcceEeeceeeeEEeecccCCCCCCcccccceeEEe
Q 030849           79 RIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNT  156 (170)
Q Consensus        79 ~~~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f--~L~~vd~~~~~~~~~~~~v~i~~~k~~Kgk~~~~~~~~~~v~i  156 (170)
                      ++++||.||+|+.|+|+++.       +++++++|  +|.+++++.+++.|..           |       .....++|
T Consensus        94 ~~~~df~r~~G~~V~V~l~~-------~~~g~k~~~G~L~~~~~~~v~l~~~~-----------k-------~~~~~~~i  148 (164)
T 1ib8_A           94 KTKDAVAGAVGKYIHVGLYQ-------AIDKQKVFEGTLLAFEEDELTMEYMD-----------K-------TRKKTVQI  148 (164)
T ss_dssp             SSHHHHHHHCSEEEEEECSS-------CSSSCSEEEEEEEEEETTEEEEEEEC-----------S-------SCEEEEEE
T ss_pred             CCHHHHHHhCCcEEEEEEec-------ccCCceEEEEEEEEEeCCEEEEEEec-----------c-------cCCeEEEE
Confidence            99999999999999999999       77888999  9999999995533320           0       11123789


Q ss_pred             eccccceeEEEec
Q 030849          157 TFDSLRLVRLHSD  169 (170)
Q Consensus       157 p~~~I~karL~i~  169 (170)
                      ||++|++|||.++
T Consensus       149 ~~~~I~ka~l~~e  161 (164)
T 1ib8_A          149 PYSLVSKARLAVK  161 (164)
T ss_dssp             CSSCCSSCEEECS
T ss_pred             EHHHCcEEEEEEE
Confidence            9999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	170
d1ib8a2	90	d.52.4.1 (A:1-90) Hypothetical protein SP14.3 (SP0	6e-05

>d1ib8a2 d.52.4.1 (A:1-90) Hypothetical protein SP14.3 (SP0552) {Streptococcus pneumoniae [TaxId: 1313]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: YhbC-like, N-terminal domain
family: YhbC-like, N-terminal domain
domain: Hypothetical protein SP14.3 (SP0552)
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 37.8 bits (88), Expect = 6e-05
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 28 VACDRSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVE 75
          +  D+    ++ D           LD  +     PE   LE++SPG+E
Sbjct: 44 IFVDKPEGITLNDTADLTEMISPVLDTIK-PDPFPEQYFLEITSPGLE 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	170
d1ib8a2	90	Hypothetical protein SP14.3 (SP0552) {Streptococcu	99.82
d1ib8a1	74	Hypothetical protein SP14.3 (SP0552) {Streptococcu	99.54

>d1ib8a2 d.52.4.1 (A:1-90) Hypothetical protein SP14.3 (SP0552) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: YhbC-like, N-terminal domain
family: YhbC-like, N-terminal domain
domain: Hypothetical protein SP14.3 (SP0552)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.82  E-value=4.4e-21  Score=136.29  Aligned_cols=59  Identities=22%  Similarity=0.380  Sum_probs=52.6

Q ss_pred             ccccccCCcceeE-----------EEEEEEcCCCCCCHHHHHHHHHHHHHhhhh--hhhcCCCCCCeEEEEecCCCC
Q 030849           12 RNRVLNNKMPLWL-----------TQLVACDRSGSPSMEDIEAFCTTYRARLDE--AEIAKSIPENTSLEVSSPGVE   75 (170)
Q Consensus        12 ~~~~~~~g~~~~~-----------lrv~~iD~~~gvtlddC~~vSr~is~~LD~--~d~~~~i~~~Y~LEVSSPGie   75 (170)
                      .|++ ++||++|.           |||| ||+++|||+|||+.+||.|+++||+  +|   +|+++|+|||||||+|
T Consensus        19 ~pvv-~~G~eL~~ve~~~~~~~~~l~I~-ID~~~gv~iddC~~vSr~is~~LD~~e~d---~i~~~Y~LEVSSPGld   90 (90)
T d1ib8a2          19 EPVI-EAPFELVDIEYGKIGSDMILSIF-VDKPEGITLNDTADLTEMISPVLDTIKPD---PFPEQYFLEITSPGLE   90 (90)
T ss_dssp             HHHH-CSSSEEEEEEEEEETTEEEEEEE-EECSSCCCHHHHHHHHHHHGGGTTTCCSC---CCCSCEEEEEECCSSS
T ss_pred             HHHH-hCCCEEEEEEEEeCCCCEEEEEE-EECCCCcCHHHHHHHHHHHHHHhcccccc---CCCCCeEEEeeCCCCC
Confidence            3555 47999874           6899 9999999999999999999999996  45   9999999999999996

>d1ib8a1 b.38.2.1 (A:91-164) Hypothetical protein SP14.3 (SP0552) {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Sm-like fold
superfamily: YhbC-like, C-terminal domain
family: YhbC-like, C-terminal domain
domain: Hypothetical protein SP14.3 (SP0552)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.54  E-value=5.1e-15  Score=100.51  Aligned_cols=69  Identities=14%  Similarity=0.216  Sum_probs=57.7

Q ss_pred             CCCCChHHHHhcCCCeEEEEEEeccccCCCCCCCCceE--EEEEEcCCcceEeeceeeeEEeecccCCCCCCccccccee
Q 030849           76 RVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWR  153 (170)
Q Consensus        76 RpL~~~~~f~r~~G~~v~V~l~~~~~~~~~~~~~~~~f--~L~~vd~~~~~~~~~~~~v~i~~~k~~Kgk~~~~~~~~~~  153 (170)
                      |||++++||.+|+|+.|+|++..       |++|+++|  .|.+++++.+++.+.                  .+.....
T Consensus         1 RpL~~~~~f~r~~G~~v~v~l~~-------p~~g~k~f~G~L~~~~~~~i~l~~~------------------~~~~~~~   55 (74)
T d1ib8a1           1 RPLKTKDAVAGAVGKYIHVGLYQ-------AIDKQKVFEGTLLAFEEDELTMEYM------------------DKTRKKT   55 (74)
T ss_dssp             SCCSSHHHHHHHCSEEEEEECSS-------CSSSCSEEEEEEEEEETTEEEEEEE------------------CSSCEEE
T ss_pred             CCcCCHHHHHHhCCCEEEEEEec-------ccCCceEEEEEEEeecCCeEEEEEe------------------cCcccEE
Confidence            89999999999999999999999       88899999  999999999553321                  1121223


Q ss_pred             EEeeccccceeEEEec
Q 030849          154 LNTTFDSLRLVRLHSD  169 (170)
Q Consensus       154 v~ip~~~I~karL~i~  169 (170)
                      ++|||++|++|||.++
T Consensus        56 ~~i~~~~I~kArL~ve   71 (74)
T d1ib8a1          56 VQIPYSLVSKARLAVK   71 (74)
T ss_dssp             EEECSSCCSSCEEECS
T ss_pred             EEEcHHHheeEEEEEE
Confidence            8999999999999986