Citrus Sinensis ID: 030853

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Protein Sequence
MEVSLLSLSSSQNLTLKPSTNPLFHFHPSKRSKPPPTHIRAAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGVGYWIGGDFAGSG
Secondary Structure (PSIPRED)
ccEEEEcccccccccccccccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHccEEEEEEcccccHHHHHHHHHHcccccEEEEEccHHHHHHHcccccccccccccccEEEEEEccccccHHHHHHHHHHHHccccccEEEEEEEEcEEccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHcccccEEEEEEHHHHHHHHHccccccHHHHHccccEEEEEccccHHHHHHHHHHHHHHccccHcEEcEEEEEcEEEcccccccccc
Coil and Loop (DISEMBL)
mevsllslsssqnltlkpstnplfhfhpskrskpppthIRAAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLfvhteeipaaikPYRNFQKEKKLEENDFAGAVFEGVgywiggdfagsg
Flexible Loop (DISEMBL)
MEVSLLSLSssqnltlkpsTNPLFHfhpskrskppptHIRAAIsrtkkeetvdTVKTHLENCHLIAAIKYKGFTVKQFQDLrrslpentklivaknTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGVGYWIGGDFAGSG
Low Complexity Region (SEG)
MEVsllslsssqnltlKPSTNPLFHFHPSKRSKPPPTHIRAAISRtkkeetvdtvktHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGVGYWIGGDFAGSG
Disordered region (IsUnstruct)
***************************************************VDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGVGYWIGGDF****
Disordered Region (DISOPRED)
**********************************************KKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGVGYWIGGDFAGS*
Disordered Region (DISEMBL)
MEVSLLSLSSSQNLTLKPSTNPLFHFHPS*********IRAAISR*********VKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGVGYWIGGDFAGSG
Disordered Region (DISPRO)
**********************************PPTHIRAAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGVGYWIGGD*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVSLLSLSSSQNLTLKPSTNPLFHFHPSKRSKPPPTHIRAAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGVGYWIGGDFAGSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	170	2.2.26 [Sep-21-2011]
Q9FY50	220	50S ribosomal protein L10	yes	no	0.717	0.554	0.811	2e-56
O80362	227	50S ribosomal protein L10	N/A	no	0.876	0.656	0.690	5e-55
Q119S8	190	50S ribosomal protein L10	yes	no	0.652	0.584	0.379	2e-14
Q7V383	175	50S ribosomal protein L10	yes	no	0.629	0.611	0.366	3e-14
A2BUH9	175	50S ribosomal protein L10	yes	no	0.629	0.611	0.366	7e-14
A5GWK0	174	50S ribosomal protein L10	yes	no	0.629	0.614	0.342	2e-13
A2BNZ7	175	50S ribosomal protein L10	yes	no	0.629	0.611	0.348	3e-13
A3PAS0	175	50S ribosomal protein L10	yes	no	0.629	0.611	0.348	4e-13
A8G2K9	175	50S ribosomal protein L10	yes	no	0.629	0.611	0.348	5e-13
Q31CX9	175	50S ribosomal protein L10	yes	no	0.629	0.611	0.348	5e-13

>sp|Q9FY50|RK10_ARATH 50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana GN=RPL10 PE=2 SV=1

 Score =  218 bits (554), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 99/122 (81%), Positives = 112/122 (91%)

Query: 39  IRAAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTL 98
           IR+A+SR KKEETV+ VK+HLENCHL+AAI YKG TVKQFQDLRR+LP+ TKLIVAKNTL
Sbjct: 39  IRSAVSRNKKEETVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTL 98

Query: 99  VYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGV 158
           V+KAIEGT+WEALKPCM GMNAWLFV T+EIP+AIKPYR+FQKE+KLE NDFAGAVFEG 
Sbjct: 99  VFKAIEGTKWEALKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGK 158

Query: 159 GY 160
            Y
Sbjct: 159 FY 160

This protein binds directly to 23S ribosomal RNA.
Arabidopsis thaliana (taxid: 3702)

>sp|O80362|RK10_TOBAC 50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1

 Score =  213 bits (542), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 107/155 (69%), Positives = 122/155 (78%), Gaps = 6/155 (3%)

Query: 6   LSLSSSQNLTLKPSTNPLFHFHPSKRSKPPPTHIRAAISRTKKEETVDTVKTHLENCHLI 65
            SL S  N +L   T+P  HF P  ++      IR+AISRTKKEETV+TVK  LE+C+L+
Sbjct: 18  FSLKSHFNNSLTLPTHP--HFKPKSKN----LTIRSAISRTKKEETVETVKQQLEDCYLL 71

Query: 66  AAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVH 125
           A I YKG TVKQFQ+LR  LP+ TKL+VAKNTLV KAIEGT+WEALKPCM GMNAWLFVH
Sbjct: 72  AGIGYKGLTVKQFQELRSQLPDTTKLLVAKNTLVLKAIEGTKWEALKPCMKGMNAWLFVH 131

Query: 126 TEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGVGY 160
           +EEIPAA+KPYR FQKEKKLEENDF GAVFEG  Y
Sbjct: 132 SEEIPAALKPYRTFQKEKKLEENDFTGAVFEGKFY 166

This protein binds directly to 23S ribosomal RNA.

Nicotiana tabacum (taxid: 4097)

>sp|Q119S8|RL10_TRIEI 50S ribosomal protein L10 OS=Trichodesmium erythraeum (strain IMS101) GN=rplJ PE=3 SV=1

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 69/116 (59%), Gaps = 5/116 (4%)

Query: 44  SRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSL-PENTKLIVAKNTLVYKA 102
           S+ +KEE +  +K +L    L   I Y+G +V +  DLRR L P  +   +AKNTL+  A
Sbjct: 4   SKKQKEEMLAGIKQNLSESQLALVINYQGLSVAEITDLRRRLIPTGSICSIAKNTLMGIA 63

Query: 103 I-EGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEG 157
           + E + W+ ++  ++G NA+LF+   +I  AIK Y++FQK  K  + +F G V EG
Sbjct: 64  VKEDSNWQPMEDLLAGSNAFLFLKN-DIGGAIKAYQDFQKATK--KTEFKGGVMEG 116

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

>sp|Q7V383|RL10_PROMP 50S ribosomal protein L10 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplJ PE=3 SV=1

 Score = 77.8 bits (190), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 68/112 (60%), Gaps = 5/112 (4%)

Query: 48  KEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLI-VAKNTLVYKAIEG- 105
           K++ V  +K+ L++  +   + YKG T+K+  DLR  L  N  +  V KN+L+ KAI+G 
Sbjct: 8   KQKIVTEIKSLLDDSEMAVVLDYKGLTIKEMSDLRSRLQTNNGICKVTKNSLMRKAIDGN 67

Query: 106 TQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEG 157
           + W  L+  ++G NA++ +  E++  A+K  ++FQKE K  E    GA+FEG
Sbjct: 68  SNWTDLESLLTGTNAFVLIK-EDVGGAVKAIQSFQKETKKSET--KGALFEG 116

Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) (taxid: 59919)

>sp|A2BUH9|RL10_PROM5 50S ribosomal protein L10 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplJ PE=3 SV=1

 Score = 76.6 bits (187), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 68/112 (60%), Gaps = 5/112 (4%)

Query: 48  KEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLI-VAKNTLVYKAIEG- 105
           K++ V  +K+ L++  +   + YKG T+K+  DLR  L  N  +  V KN+L+ KAI+G 
Sbjct: 8   KQKIVTELKSLLDDSEMAVVLDYKGLTIKEMSDLRSRLQTNKGICKVTKNSLMRKAIDGN 67

Query: 106 TQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEG 157
           + W  L+  ++G NA++ +  E++  A+K  ++FQKE K  E    GA+FEG
Sbjct: 68  SNWTDLESLLTGTNAFVLIK-EDVGGAVKAIQSFQKETKKSETK--GALFEG 116

Prochlorococcus marinus (strain MIT 9515) (taxid: 167542)

>sp|A5GWK0|RL10_SYNR3 50S ribosomal protein L10 OS=Synechococcus sp. (strain RCC307) GN=rplJ PE=3 SV=1

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 64/111 (57%), Gaps = 4/111 (3%)

Query: 48  KEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQ 107
           K++ V+ +K  L    +   + YKG ++K+  DLR  L  N    V KNTL+ +AI+G  
Sbjct: 8   KQQIVEELKQLLGEAEMALVLDYKGLSIKEMSDLRGRLAANGICKVTKNTLMRRAIDGND 67

Query: 108 -WEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEG 157
            W  L P ++G NA++ V   ++  A+K  ++FQK+ K  +++  G +FEG
Sbjct: 68  TWSDLDPLLTGTNAFVLVKG-DVGGAVKAVQSFQKDSK--KSELKGGLFEG 115

Synechococcus sp. (strain RCC307) (taxid: 316278)

>sp|A2BNZ7|RL10_PROMS 50S ribosomal protein L10 OS=Prochlorococcus marinus (strain AS9601) GN=rplJ PE=3 SV=1

 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 67/112 (59%), Gaps = 5/112 (4%)

Query: 48  KEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLI-VAKNTLVYKAIEG- 105
           K++ V  +K+ L++  +   + YKG T+K+  DLR  L     +  V KN+L+ KAI+G 
Sbjct: 8   KQKIVTEIKSLLDDSEMAVVLDYKGLTIKEMSDLRSRLQTTNGICKVTKNSLMRKAIDGD 67

Query: 106 TQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEG 157
           + W  L+  ++G NA++ +  E++  A+K  ++FQK+ K  E    GA+FEG
Sbjct: 68  SNWNDLESLLTGTNAFVLIK-EDVGGAVKAIQSFQKDTKKSET--KGALFEG 116

Prochlorococcus marinus (strain AS9601) (taxid: 146891)

>sp|A3PAS0|RL10_PROM0 50S ribosomal protein L10 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplJ PE=3 SV=1

 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 66/112 (58%), Gaps = 5/112 (4%)

Query: 48  KEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLI-VAKNTLVYKAIEG- 105
           K++ V  +K+ L +  +   + YKG T+K+  DLR  L     +  V KN+L+ KAI+G 
Sbjct: 8   KQQIVTEIKSLLNDSEMAVVLDYKGLTIKEMSDLRSRLQTTNGICKVTKNSLMRKAIDGD 67

Query: 106 TQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEG 157
           + W  L+  ++G NA++ +  E++  A+K  ++FQK+ K  E    GA+FEG
Sbjct: 68  SNWNDLESLLTGTNAFVLIK-EDVGGAVKAIQSFQKDTKKSET--KGALFEG 116

Prochlorococcus marinus (strain MIT 9301) (taxid: 167546)

>sp|A8G2K9|RL10_PROM2 50S ribosomal protein L10 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplJ PE=3 SV=1

 Score = 73.9 bits (180), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 66/112 (58%), Gaps = 5/112 (4%)

Query: 48  KEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLI-VAKNTLVYKAIEG- 105
           K++ V  +K+ L +  +   + YKG T+K+  DLR  L     +  V KN+L+ KAI+G 
Sbjct: 8   KQQIVTEIKSLLNDSEMAVVLDYKGLTIKEMSDLRSRLRTTNGICRVTKNSLMRKAIDGD 67

Query: 106 TQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEG 157
           + W  L+  ++G NA++ +  E++  A+K  ++FQK+ K  E    GA+FEG
Sbjct: 68  SNWNDLESLLTGTNAFVLIK-EDVGGAVKAIQSFQKDTKKSET--KGALFEG 116

Prochlorococcus marinus (strain MIT 9215) (taxid: 93060)

>sp|Q31CX9|RL10_PROM9 50S ribosomal protein L10 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplJ PE=3 SV=1

 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 66/112 (58%), Gaps = 5/112 (4%)

Query: 48  KEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLI-VAKNTLVYKAIEG- 105
           K++ V  +K+ L +  +   + YKG T+K+  DLR  L     +  V KN+L+ KAI+G 
Sbjct: 8   KQQIVTEIKSLLNDSEMAVVLDYKGLTIKEMSDLRSRLQTTNGICKVTKNSLMRKAIDGD 67

Query: 106 TQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEG 157
           + W  L+  ++G NA++ +  E++  A+K  ++FQK+ K  E    GA+FEG
Sbjct: 68  SNWNDLESLLTGTNAFVLIK-EDVGGAVKAIQSFQKDTKKSET--KGALFEG 116

Prochlorococcus marinus (strain MIT 9312) (taxid: 74546)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
357480187	234	50S ribosomal protein L10 [Medicago trun	0.911	0.662	0.689	1e-56
255555289	232	50S ribosomal protein L10, putative [Ric	0.923	0.676	0.688	2e-56
449451707	235	PREDICTED: 50S ribosomal protein L10, ch	0.870	0.629	0.727	9e-56
449507576	235	PREDICTED: 50S ribosomal protein L10, ch	0.870	0.629	0.727	1e-55
225448737	226	PREDICTED: 50S ribosomal protein L10, ch	0.882	0.663	0.716	4e-55
356562595	232	PREDICTED: 50S ribosomal protein L10, ch	0.894	0.655	0.694	5e-55
15240644	220	Ribosomal protein L10 family protein [Ar	0.717	0.554	0.811	8e-55
297807377	220	ribosomal protein L10 family protein [Ar	0.717	0.554	0.803	8e-55
224098099	182	predicted protein [Populus trichocarpa]	0.758	0.708	0.793	1e-54
224112933	227	predicted protein [Populus trichocarpa]	0.729	0.546	0.824	2e-54

>gi|357480187|ref|XP_003610379.1| 50S ribosomal protein L10 [Medicago truncatula] gi|217071998|gb|ACJ84359.1| unknown [Medicago truncatula] gi|355511434|gb|AES92576.1| 50S ribosomal protein L10 [Medicago truncatula] gi|388522083|gb|AFK49103.1| unknown [Medicago truncatula]

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 111/161 (68%), Positives = 128/161 (79%), Gaps = 6/161 (3%)

Query: 6   LSLSSSQNLTLKPSTNPLFHFHPSKRSKPPP---TH---IRAAISRTKKEETVDTVKTHL 59
            SL S++  + +  T P+  F+P    K  P   TH   I AAISRTKKEETV+TVK  L
Sbjct: 10  FSLPSTKTQSFQILTRPINPFNPPTSYKHRPISKTHRLSINAAISRTKKEETVETVKEQL 69

Query: 60  ENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMN 119
           ENC+L+A I YKGFTVKQFQ+LR++LPE TKL+VAKNTLVYKA+EGTQWE LKPCM+GMN
Sbjct: 70  ENCYLLAGINYKGFTVKQFQELRKTLPETTKLVVAKNTLVYKALEGTQWETLKPCMTGMN 129

Query: 120 AWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGVGY 160
            WLFVHTEEIP+AIKPYR+FQKEKKLEENDF GAVFEG  Y
Sbjct: 130 VWLFVHTEEIPSAIKPYRDFQKEKKLEENDFTGAVFEGKFY 170

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555289|ref|XP_002518681.1| 50S ribosomal protein L10, putative [Ricinus communis] gi|223542062|gb|EEF43606.1| 50S ribosomal protein L10, putative [Ricinus communis]

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 117/170 (68%), Positives = 131/170 (77%), Gaps = 13/170 (7%)

Query: 1   MEVSLLSLSSS-----QNLT-LKPSTNPLFHFHPSKRSKPP----PTHIRAAISRTKKEE 50
           ME +LLS  SS     Q LT  +   NP   F  SK  + P    P  I +AISRTKKEE
Sbjct: 1   METTLLSFPSSKTSPCQTLTQFRSFRNP---FPLSKSFRKPTSYKPISINSAISRTKKEE 57

Query: 51  TVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEA 110
           TV+TVKT LENC+L+AAIKY GFTVKQFQDLRR+LPE+T+LIVAKNTLV+KAIEGT WEA
Sbjct: 58  TVETVKTQLENCYLLAAIKYTGFTVKQFQDLRRALPESTRLIVAKNTLVFKAIEGTPWEA 117

Query: 111 LKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGVGY 160
           LKPCM GMNAWLFVH+EEIP A+KPYR FQK+KKLE NDF GAVFEG  Y
Sbjct: 118 LKPCMKGMNAWLFVHSEEIPEALKPYRTFQKDKKLESNDFTGAVFEGKFY 167

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451707|ref|XP_004143603.1| PREDICTED: 50S ribosomal protein L10, chloroplastic-like [Cucumis sativus]

 Score =  221 bits (563), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 112/154 (72%), Positives = 122/154 (79%), Gaps = 6/154 (3%)

Query: 12  QNLTLKPSTNPLFHFHPSKRSKPPPTHIR-----AAISRTKKEETVDTVKTHLENCHLIA 66
           Q LTL   TNPL  F   + S     H R     AAISRTKKEETV+TVK  LE+C+L+A
Sbjct: 20  QILTLNRPTNPL-SFSLPRHSTNQTRHYRGLKVSAAISRTKKEETVETVKQQLEDCYLLA 78

Query: 67  AIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHT 126
            IKYKGFTVKQFQ+LRRSLPE +KLIVAKNTLV KAIEGT WEALKPCM GMN WLFVH+
Sbjct: 79  GIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEALKPCMKGMNVWLFVHS 138

Query: 127 EEIPAAIKPYRNFQKEKKLEENDFAGAVFEGVGY 160
           EEIPAAIKPYR+FQKEKKLE+NDF GAVFEG  Y
Sbjct: 139 EEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYY 172

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507576|ref|XP_004163071.1| PREDICTED: 50S ribosomal protein L10, chloroplastic-like [Cucumis sativus]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 112/154 (72%), Positives = 122/154 (79%), Gaps = 6/154 (3%)

Query: 12  QNLTLKPSTNPLFHFHPSKRSKPPPTHIR-----AAISRTKKEETVDTVKTHLENCHLIA 66
           Q LTL   TNPL  F   + S     H R     AAISRTKKEETV+TVK  LE+C+L+A
Sbjct: 20  QILTLNRPTNPL-SFSLPRHSTNQTRHYRGLKVAAAISRTKKEETVETVKQQLEDCYLLA 78

Query: 67  AIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHT 126
            IKYKGFTVKQFQ+LRRSLPE +KLIVAKNTLV KAIEGT WEALKPCM GMN WLFVH+
Sbjct: 79  GIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEALKPCMKGMNVWLFVHS 138

Query: 127 EEIPAAIKPYRNFQKEKKLEENDFAGAVFEGVGY 160
           EEIPAAIKPYR+FQKEKKLE+NDF GAVFEG  Y
Sbjct: 139 EEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYY 172

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448737|ref|XP_002281167.1| PREDICTED: 50S ribosomal protein L10, chloroplastic [Vitis vinifera]

 Score =  219 bits (557), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 111/155 (71%), Positives = 126/155 (81%), Gaps = 5/155 (3%)

Query: 6   LSLSSSQNLTLKPSTNPLFHFHPSKRSKPPPTHIRAAISRTKKEETVDTVKTHLENCHLI 65
           L+L+ S+ LTL   T P    +P +R+    T IR+AISRTKKEETV TVK  LENCHL+
Sbjct: 19  LTLTQSKTLTL---TYPK-SLNPYRRTSYS-TTIRSAISRTKKEETVQTVKEQLENCHLL 73

Query: 66  AAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVH 125
           AAIKY GFTV+QFQ+LRRSLPE +KLIVAKNTLVYKAIEGT W AL+PCM GMN +LFVH
Sbjct: 74  AAIKYNGFTVQQFQELRRSLPEKSKLIVAKNTLVYKAIEGTSWAALEPCMKGMNVFLFVH 133

Query: 126 TEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGVGY 160
           +EEIPAAIKPYR+FQKEKKLE NDF GAVFEG  Y
Sbjct: 134 SEEIPAAIKPYRDFQKEKKLEGNDFTGAVFEGKFY 168

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562595|ref|XP_003549555.1| PREDICTED: 50S ribosomal protein L10, chloroplastic-like [Glycine max]

 Score =  218 bits (556), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 107/154 (69%), Positives = 120/154 (77%), Gaps = 2/154 (1%)

Query: 9   SSSQNLTLKPSTNPLFHFHPSKRSKPPPT--HIRAAISRTKKEETVDTVKTHLENCHLIA 66
           + +Q   L   TNP      S   +PPP    IRAAI RTKKE TV+TV+  LENC+L+A
Sbjct: 17  AQAQAQLLTRPTNPFTIPSRSPAHRPPPRLPTIRAAIPRTKKEATVETVREQLENCYLLA 76

Query: 67  AIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHT 126
            I YKGFTVKQFQ+LR++LPE TKLIVAKNTLVYKA+EGT WE LKPCM GMN WLFVHT
Sbjct: 77  GINYKGFTVKQFQELRKTLPETTKLIVAKNTLVYKAVEGTPWETLKPCMKGMNVWLFVHT 136

Query: 127 EEIPAAIKPYRNFQKEKKLEENDFAGAVFEGVGY 160
           EEIP+AIKPYRNFQKEKKLE+NDF GAVFEG  Y
Sbjct: 137 EEIPSAIKPYRNFQKEKKLEDNDFTGAVFEGKFY 170

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240644|ref|NP_196855.1| Ribosomal protein L10 family protein [Arabidopsis thaliana] gi|75263201|sp|Q9FY50.1|RK10_ARATH RecName: Full=50S ribosomal protein L10, chloroplastic; AltName: Full=CL10; Flags: Precursor gi|9955543|emb|CAC05428.1| ribosomal protein L10-like [Arabidopsis thaliana] gi|21555764|gb|AAM63929.1| ribosomal protein L10-like [Arabidopsis thaliana] gi|208879528|gb|ACI31309.1| At5g13510 [Arabidopsis thaliana] gi|332004523|gb|AED91906.1| Ribosomal protein L10 family protein [Arabidopsis thaliana]

 Score =  218 bits (554), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 99/122 (81%), Positives = 112/122 (91%)

Query: 39  IRAAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTL 98
           IR+A+SR KKEETV+ VK+HLENCHL+AAI YKG TVKQFQDLRR+LP+ TKLIVAKNTL
Sbjct: 39  IRSAVSRNKKEETVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTL 98

Query: 99  VYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGV 158
           V+KAIEGT+WEALKPCM GMNAWLFV T+EIP+AIKPYR+FQKE+KLE NDFAGAVFEG 
Sbjct: 99  VFKAIEGTKWEALKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGK 158

Query: 159 GY 160
            Y
Sbjct: 159 FY 160

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807377|ref|XP_002871572.1| ribosomal protein L10 family protein [Arabidopsis lyrata subsp. lyrata] gi|297317409|gb|EFH47831.1| ribosomal protein L10 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  218 bits (554), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 98/122 (80%), Positives = 113/122 (92%)

Query: 39  IRAAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTL 98
           IR+A+SR KKEETV+ VK+HLENCHL+AAI YKG TVKQFQDLRR+LP+ TKLIVAKNTL
Sbjct: 39  IRSAVSRNKKEETVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTL 98

Query: 99  VYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGV 158
           V+KAIEGT+WEALKPCM GMNAWLFV T+EIP+A+KPYR+FQKE+KLE+NDFAGAVFEG 
Sbjct: 99  VFKAIEGTKWEALKPCMKGMNAWLFVQTDEIPSALKPYRSFQKERKLEDNDFAGAVFEGK 158

Query: 159 GY 160
            Y
Sbjct: 159 FY 160

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098099|ref|XP_002311119.1| predicted protein [Populus trichocarpa] gi|222850939|gb|EEE88486.1| predicted protein [Populus trichocarpa]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 104/131 (79%), Positives = 119/131 (90%), Gaps = 2/131 (1%)

Query: 36  PTHIRAAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAK 95
           P +I++AISRTKKEETV+TVKT LENC+L+AAIKY GFTVKQFQDLRRSLPE++K+IVAK
Sbjct: 2   PINIKSAISRTKKEETVETVKTQLENCYLLAAIKYTGFTVKQFQDLRRSLPESSKIIVAK 61

Query: 96  NTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVF 155
           NTLVYKAIE T WEALKPCM+GMNAWLFVH+EEIP A+KPYR+FQKEKKL ENDF GAVF
Sbjct: 62  NTLVYKAIENTPWEALKPCMTGMNAWLFVHSEEIPEALKPYRDFQKEKKL-ENDFTGAVF 120

Query: 156 EGVGYWIGGDF 166
           EG  ++  GDF
Sbjct: 121 EG-KFYGPGDF 130

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112933|ref|XP_002316337.1| predicted protein [Populus trichocarpa] gi|222865377|gb|EEF02508.1| predicted protein [Populus trichocarpa]

 Score =  216 bits (550), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 103/125 (82%), Positives = 113/125 (90%), Gaps = 1/125 (0%)

Query: 36  PTHIRAAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAK 95
           P  I++AISRTKKEETV+ VKT LENC+L+AAIKY GFTVKQFQD RRSLPE++KLIVAK
Sbjct: 43  PITIKSAISRTKKEETVEIVKTQLENCYLLAAIKYTGFTVKQFQDFRRSLPESSKLIVAK 102

Query: 96  NTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVF 155
           NTLVYKAIEGT WEALKPCM+GMNAWLFVHTEEIP A+KPYR+FQKEKKL ENDF GAVF
Sbjct: 103 NTLVYKAIEGTPWEALKPCMTGMNAWLFVHTEEIPEALKPYRDFQKEKKL-ENDFTGAVF 161

Query: 156 EGVGY 160
           EG  Y
Sbjct: 162 EGKFY 166

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
TAIR|locus:2185051	220	EMB3136 "AT5G13510" [Arabidops	0.717	0.554	0.745	3e-46
TAIR|locus:2092527	171	AT3G12370 "AT3G12370" [Arabido	0.582	0.578	0.683	1.5e-33
UNIPROTKB|P66044	178	rplJ "50S ribosomal protein L1	0.441	0.421	0.394	1e-06
UNIPROTKB|Q9KV32	162	rplJ "50S ribosomal protein L1	0.494	0.518	0.366	4.3e-06
TIGR_CMR|VC_0326	162	VC_0326 "ribosomal protein L10	0.494	0.518	0.366	4.3e-06
TIGR_CMR|SPO_3510	172	SPO_3510 "ribosomal protein L1	0.5	0.494	0.325	0.00018
TIGR_CMR|BA_0099	166	BA_0099 "ribosomal protein L10	0.511	0.524	0.307	0.00022
TIGR_CMR|CBU_0228	174	CBU_0228 "ribosomal protein L1	0.494	0.482	0.344	0.00028
UNIPROTKB|P0A7J3	165	rplJ "50S ribosomal subunit pr	0.488	0.503	0.337	0.0005

TAIR|locus:2185051 EMB3136 "AT5G13510" [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 91/122 (74%), Positives = 102/122 (83%)

Query:    39 IRAAISRXXXXXXXXXXXXHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTL 98
             IR+A+SR            HLENCHL+AAI YKG TVKQFQDLRR+LP+ TKLIVAKNTL
Sbjct:    39 IRSAVSRNKKEETVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTL 98

Query:    99 VYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGV 158
             V+KAIEGT+WEALKPCM GMNAWLFV T+EIP+AIKPYR+FQKE+KLE NDFAGAVFEG 
Sbjct:    99 VFKAIEGTKWEALKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGK 158

Query:   159 GY 160
              Y
Sbjct:   159 FY 160

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005840 "ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2092527 AT3G12370 "AT3G12370" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 69/101 (68%), Positives = 82/101 (81%)

Query:    58 HLENCHLIAAIKYKGFTVKQFQDLRRSLPENT--KLIVAKNTLVYKAIEGTQWEALKPCM 115
             +LENCH I  I Y G +VKQ Q+LR  L ENT  KL+VAKNTLVYKA+EGT+WE+LKPCM
Sbjct:    17 NLENCHFITGINYNGLSVKQLQELRGILRENTNTKLLVAKNTLVYKALEGTKWESLKPCM 76

Query:   116 SGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFE 156
              GMNAWLFV +E+IPAA+K + NFQKEKKL +N+  GAVFE
Sbjct:    77 KGMNAWLFVQSEDIPAALKTFINFQKEKKLYDNNLGGAVFE 117

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

UNIPROTKB|P66044 rplJ "50S ribosomal protein L10" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 30/76 (39%), Positives = 38/76 (50%)

Query:    69 KYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEE 128
             +Y+G TV    +LRRSL  +    VAKNTL+ +A      E L     G  A  FV  E 
Sbjct:    27 EYRGLTVANLAELRRSLTGSATYAVAKNTLIKRAASEAGIEGLDELFVGPTAIAFVTGEP 86

Query:   129 IPAAIKPYRNFQKEKK 144
             + AA K  + F KE K
Sbjct:    87 VDAA-KAIKTFAKEHK 101

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

UNIPROTKB|Q9KV32 rplJ "50S ribosomal protein L10" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 33/90 (36%), Positives = 45/90 (50%)

Query:    71 KGFTVKQFQDLRRSLPE-NTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEI 129
             +G  V    +LR+   E    L V +NTL  +A+EGT +E LK    G    L   + E 
Sbjct:    31 RGVQVAAMTNLRKQAREAGVYLKVVRNTLARRAVEGTAYECLKDVFVGPT--LIGFSNEH 88

Query:   130 P-AAIKPYRNFQKEKKLEENDFAGAVFEGV 158
             P AA + +++F KE K  E     A FEGV
Sbjct:    89 PGAAARLFKDFAKENKAFE--IKAAAFEGV 116

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|VC_0326 VC_0326 "ribosomal protein L10" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 33/90 (36%), Positives = 45/90 (50%)

Query:    71 KGFTVKQFQDLRRSLPE-NTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEI 129
             +G  V    +LR+   E    L V +NTL  +A+EGT +E LK    G    L   + E 
Sbjct:    31 RGVQVAAMTNLRKQAREAGVYLKVVRNTLARRAVEGTAYECLKDVFVGPT--LIGFSNEH 88

Query:   130 P-AAIKPYRNFQKEKKLEENDFAGAVFEGV 158
             P AA + +++F KE K  E     A FEGV
Sbjct:    89 PGAAARLFKDFAKENKAFE--IKAAAFEGV 116

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|SPO_3510 SPO_3510 "ribosomal protein L10" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 100 (40.3 bits), Expect = 0.00018, P = 0.00018
 Identities = 29/89 (32%), Positives = 45/89 (50%)

Query:    60 ENCHLIAAIKYKGFTVKQFQDLR-RSLPENTKLIVAKNTLVYKAIEGTQWEALKPCMSGM 118
             E+  ++    Y G TV + QDLR R+      + VAKN L   A+EG    ++   ++GM
Sbjct:    18 ESSGVVVVAHYAGLTVAEMQDLRARAREAGGSVRVAKNRLAKIALEGKPCASMADLLTGM 77

Query:   119 NAWLFVHTEEIPAAIKPYRNFQKE-KKLE 146
                +  ++E+  AA K    F K+ KK E
Sbjct:    78 T--VLTYSEDPVAAAKVAEGFAKDNKKFE 104

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|BA_0099 BA_0099 "ribosomal protein L10" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 99 (39.9 bits), Expect = 0.00022, P = 0.00022
 Identities = 28/91 (30%), Positives = 45/91 (49%)

Query:    68 IKYKGFTVKQFQDLRRSLPE-NTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHT 126
             + Y+G TV +  +LR+ L E   +  V KN+L  +A E  +   L   ++G NA  F + 
Sbjct:    28 VDYRGLTVSEATELRKQLREAGVEFKVYKNSLTRRAAESAEMAELNEFLTGPNAIAFSN- 86

Query:   127 EEIPAAIKPYRNFQKEKKLEENDFAGAVFEG 157
             E++ A  K   +F K+   E  +    V EG
Sbjct:    87 EDVVAPAKVLNDFAKDH--EALEIKAGVIEG 115

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CBU_0228 CBU_0228 "ribosomal protein L10" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 99 (39.9 bits), Expect = 0.00028, P = 0.00028
 Identities = 30/87 (34%), Positives = 44/87 (50%)

Query:    67 AIKYKGFTVKQFQDLRRSLPE-NTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVH 125
             A  Y+G TV +  DLR+S  E    + V +NTL  +A + T +  L+  ++G    LF  
Sbjct:    27 AADYRGLTVSEMSDLRKSAREARVHMRVYRNTLARRAFKETTYACLEEVLTGPIV-LFFS 85

Query:   126 TEEIPAAIKPYRNFQKE-KKLEENDFA 151
              EE  AA +    F KE ++LE    A
Sbjct:    86 QEEPGAAARLIEKFIKEHERLEVKGLA 112

GO:0003735 "structural constituent of ribosome" evidence=ISS

UNIPROTKB|P0A7J3 rplJ "50S ribosomal subunit protein L10" [Escherichia coli K-12 (taxid:83333)]

 Score = 97 (39.2 bits), Expect = 0.00050, P = 0.00050
 Identities = 30/89 (33%), Positives = 46/89 (51%)

Query:    71 KGFTVKQFQDLRRSLPE-NTKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEEI 129
             +G TV +  +LR++  E    + V +NTL+ +A+EGT +E LK    G    L  ++ E 
Sbjct:    31 RGVTVDKMTELRKAGREAGVYMRVVRNTLLRRAVEGTPFECLKDAFVGPT--LIAYSMEH 88

Query:   130 P-AAIKPYRNFQKEKKLEENDFAGAVFEG 157
             P AA + ++ F K     E     A FEG
Sbjct:    89 PGAAARLFKEFAKANAKFE--VKAAAFEG 115


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.423    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      170       145   0.00071  103 3  11 22  0.46    31
                                                     30  0.49    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  159 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.32u 0.09s 15.41t   Elapsed:  00:00:01
  Total cpu time:  15.32u 0.09s 15.41t   Elapsed:  00:00:01
  Start:  Fri May 10 00:37:12 2013   End:  Fri May 10 00:37:13 2013

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FY50	RK10_ARATH	No assigned EC number	0.8114	0.7176	0.5545	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	170
cd05797	157	cd05797, Ribosomal_L10, Ribosomal protein L10 fami	4e-30
cd00379	155	cd00379, Ribosomal_L10_P0, Ribosomal protein L10 f	5e-25
PRK00099	172	PRK00099, rplJ, 50S ribosomal protein L10; Reviewe	3e-24
pfam00466	100	pfam00466, Ribosomal_L10, Ribosomal protein L10	1e-21
COG0244	175	COG0244, RplJ, Ribosomal protein L10 [Translation,	2e-16
cd05795	175	cd05795, Ribosomal_P0_L10e, Ribosomal protein L10	3e-09
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	8e-08
PTZ00135	310	PTZ00135, PTZ00135, 60S acidic ribosomal protein P	1e-04

>gnl|CDD|240223 cd05797, Ribosomal_L10, Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10

 Score =  107 bits (269), Expect = 4e-30
 Identities = 48/116 (41%), Positives = 62/116 (53%), Gaps = 6/116 (5%)

Query: 44  SRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPE-NTKLIVAKNTLVYKA 102
           +R KKEE V  +K  L+    +    Y+G TV Q  +LR+ L E   KL V KNTL  +A
Sbjct: 1   NREKKEEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELREAGVKLKVVKNTLAKRA 60

Query: 103 IEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKE-KKLEENDFAGAVFEG 157
           +EGT +E L   + G  A  F   E+  AA K  ++F KE KKLE     G V EG
Sbjct: 61  LEGTGFEDLDDLLKGPTAIAFS-EEDPVAAAKVLKDFAKENKKLE---IKGGVVEG 112

L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These bacteria and eukaryotic sequences have no additional C-terminal domain, present in other eukaryotic and archaeal orthologs. Length = 157

>gnl|CDD|238222 cd00379, Ribosomal_L10_P0, Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins

 Score = 93.8 bits (234), Expect = 5e-25
 Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 6/113 (5%)

Query: 47  KKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPE-NTKLIVAKNTLVYKAIEG 105
           KKEE V+ +K  L+    +  + Y+G TV Q  +LR+ L E   KL V KNTL+ +A++G
Sbjct: 2   KKEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRESGAKLKVGKNTLMRRALKG 61

Query: 106 TQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFA-GAVFEG 157
           T +E LKP + G  A  F   E+     K  ++F KE K     FA G V  G
Sbjct: 62  TGFEELKPLLKGPTALAFT-NEDPVEVAKVLKDFAKENK---KLFAKGGVVAG 110

In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). Some eukaryotic P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2. Length = 155

>gnl|CDD|234632 PRK00099, rplJ, 50S ribosomal protein L10; Reviewed

 Score = 92.5 bits (231), Expect = 3e-24
 Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 45  RTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPE-NTKLIVAKNTLVYKAI 103
           R +K+E V  +   L+         Y+G TV Q  +LR+ L E   +  V KNTL  +A+
Sbjct: 3   REEKKEIVAELAEKLKKAQSAVVADYRGLTVAQMTELRKKLREAGVEYKVVKNTLARRAL 62

Query: 104 EGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKE-KKLEENDFAGAVFEG 157
           EGT +E L   + G  A  F   E+  AA K  ++F K+ KKLE     G   EG
Sbjct: 63  EGTGFEGLDDLLKGPTAIAFS-YEDPVAAAKVLKDFAKDNKKLE---IKGGAIEG 113

Length = 172

>gnl|CDD|215933 pfam00466, Ribosomal_L10, Ribosomal protein L10

 Score = 83.4 bits (207), Expect = 1e-21
 Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 3/99 (3%)

Query: 45  RTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENT-KLIVAKNTLVYKAI 103
           R KKEE V  +K  L+    +  + Y+G TV Q  +LR+ L E   +L V KNTL+ +A+
Sbjct: 3   REKKEEIVAELKELLKEYKSVVVVDYRGLTVAQLTELRKKLREAGAELKVGKNTLMRRAL 62

Query: 104 EGT-QWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQK 141
           EGT + EAL   + G  A +F + E+  A  K  + F K
Sbjct: 63  EGTGEEEALSELLKGPTALIFTN-EDPVAVAKVLKKFAK 100

Length = 100

>gnl|CDD|223322 COG0244, RplJ, Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]

 Score = 72.3 bits (178), Expect = 2e-16
 Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 7/120 (5%)

Query: 41  AAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN-TKLIVAKNTLV 99
            A++R  K+E V  +K  ++    +  + Y+G TV Q  +LR+ L E   KL V KNTL+
Sbjct: 1   MALAREWKKELVAELKELIKESPSVVIVDYRGLTVAQLTELRKKLREAGAKLKVVKNTLL 60

Query: 100 YKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKE--KKLEENDFAGAVFEG 157
            +A+E    E L   + G  A  F   E+  AA K  ++F KE   K       G V EG
Sbjct: 61  RRALEEAGLEGLDDLLKGPTAIAFS-NEDPVAAAKLLKDFAKEAGDKAP---IKGGVPEG 116

Length = 175

>gnl|CDD|240221 cd05795, Ribosomal_P0_L10e, Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e

 Score = 53.0 bits (128), Expect = 3e-09
 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 15/107 (14%)

Query: 47  KKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEG- 105
            K+E V+ +   L++   +  +       KQ Q +RRSL    ++++ KNTL+ +A+   
Sbjct: 2   WKKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRGKAEILMGKNTLIRRALRNL 61

Query: 106 ----TQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEEN 148
                + E L P + G     F+ T   P  I+        K LEEN
Sbjct: 62  GDENPELEKLLPYLKGNVG--FIFTNGDPFEIR--------KILEEN 98

P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2. Length = 175

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 49.9 bits (120), Expect = 8e-08
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 14/105 (13%)

Query: 47  KKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGT 106
           KKEE V+ +K  +++  ++  +  +G   +Q Q++RR L    +L V+KNTL+ +A+E  
Sbjct: 8   KKEE-VEELKELIKSYPVVGIVDLEGIPARQLQEIRRKLRGKAELKVSKNTLIKRALEEA 66

Query: 107 QW---EALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEEN 148
                E L+  + G  A +F  T   P  +         K LE++
Sbjct: 67  GEEDLEKLEDYLEGQVALIF--TNMNPFKLY--------KLLEKS 101

Length = 330

>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 7/65 (10%)

Query: 76  KQFQDLRRSLPENTKLIVAKNTLVYKAI-----EGTQWEALKPCMSGMNAWLFVHTEEIP 130
           KQ QD+RRSL    +L++ KNTL+ KA+     E  + E L P + G     FV T++  
Sbjct: 38  KQMQDIRRSLRGKAELLMGKNTLIRKALKQRLEELPELEKLLPHVKGNVG--FVFTKDDL 95

Query: 131 AAIKP 135
             +KP
Sbjct: 96  FEVKP 100

Length = 310

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	170
PRK00099	172	rplJ 50S ribosomal protein L10; Reviewed	99.97
cd05797	157	Ribosomal_L10 Ribosomal protein L10 family, L10 su	99.97
COG0244	175	RplJ Ribosomal protein L10 [Translation, ribosomal	99.96
cd00379	155	Ribosomal_L10_P0 Ribosomal protein L10 family; com	99.94
PF00466	100	Ribosomal_L10: Ribosomal protein L10; InterPro: IP	99.93
cd05796	163	Ribosomal_P0_like Ribosomal protein L10 family, P0	99.9
cd05795	175	Ribosomal_P0_L10e Ribosomal protein L10 family, P0	99.9
PRK04019	330	rplP0 acidic ribosomal protein P0; Validated	99.88
PTZ00135	310	60S acidic ribosomal protein P0; Provisional	99.87
PTZ00240	323	60S ribosomal protein P0; Provisional	99.76
KOG0816	223	consensus Protein involved in mRNA turnover [RNA p	99.63
KOG0815	245	consensus 60S acidic ribosomal protein P0 [Transla	99.39
KOG4241	245	consensus Mitochondrial ribosomal protein L10 [Tra	99.16

>PRK00099 rplJ 50S ribosomal protein L10; Reviewed

Probab=99.97  E-value=7.2e-31  Score=207.96  Aligned_cols=120  Identities=32%  Similarity=0.456  Sum_probs=115.1

Q ss_pred             cChHHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCC-cEEEEEchHHHHHHHhCCCcccccccCcCcEEE
Q 030853           43 ISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN-TKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAW  121 (170)
Q Consensus        43 ~~r~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~-~~i~VvKNtL~r~AL~~t~~e~L~~~l~G~~al  121 (170)
                      |+|++|.+++++|++.|++|+.++++||+|++++++++||++|++. ++++|+|||||++||+++++++|.++|+|++++
T Consensus         1 m~r~~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~~~~~~~V~KNtL~~~Al~~~~~~~l~~~l~G~~al   80 (172)
T PRK00099          1 MNREEKKEIVAELAEKLKKAQSAVVADYRGLTVAQMTELRKKLREAGVEYKVVKNTLARRALEGTGFEGLDDLLKGPTAI   80 (172)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEehhHHHHHHHhcCCchhhhhhCcCCeEE
Confidence            5789999999999999999999999999999999999999999986 899999999999999999999999999999999


Q ss_pred             EEeeCCChHHHHHHHHHHhhhcCCCcceeeEEEEcCeeeccccc
Q 030853          122 LFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGVGYWIGGD  165 (170)
Q Consensus       122 vFs~~d~~~~~~K~i~~f~K~~~~~~l~ikgG~~dg~~ls~~~~  165 (170)
                      +|++ +||.+++|++.+|+|+++  ++.++||++||++++.+++
T Consensus        81 ~fs~-~d~~~~~k~l~~f~K~~~--~~~l~gg~~eg~~l~~~~i  121 (172)
T PRK00099         81 AFSY-EDPVAAAKVLKDFAKDNK--KLEIKGGAIEGKVLDAEEV  121 (172)
T ss_pred             EEeC-CChHHHHHHHHHHHhhCc--CceEEEEEECCEEcCHHHH
Confidence            9998 678899999999999987  7999999999999999865

>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10

Probab=99.97  E-value=2.8e-30  Score=201.45  Aligned_cols=119  Identities=38%  Similarity=0.516  Sum_probs=114.0

Q ss_pred             ChHHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCC-cEEEEEchHHHHHHHhCCCcccccccCcCcEEEE
Q 030853           44 SRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN-TKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWL  122 (170)
Q Consensus        44 ~r~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~-~~i~VvKNtL~r~AL~~t~~e~L~~~l~G~~alv  122 (170)
                      .|++|.+++++|++.|++|+.++++||+|++++++++||++||+. ++++|+|||||++|+++++++++.++|+|+++++
T Consensus         1 ~~~~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~~~~~~~V~KNtL~~~Al~~t~~~~l~~~l~G~~al~   80 (157)
T cd05797           1 NREKKEEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELREAGVKLKVVKNTLAKRALEGTGFEDLDDLLKGPTAIA   80 (157)
T ss_pred             ChHHHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEehhHHHHHHHhcCCchhhHhhCcCCEEEE
Confidence            478999999999999999999999999999999999999999987 8999999999999999999999999999999999


Q ss_pred             EeeCCChHHHHHHHHHHhhhcCCCcceeeEEEEcCeeeccccc
Q 030853          123 FVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGVGYWIGGD  165 (170)
Q Consensus       123 Fs~~d~~~~~~K~i~~f~K~~~~~~l~ikgG~~dg~~ls~~~~  165 (170)
                      |++ +||.+++|++.+|.|+++  ++.++||++||++++.+++
T Consensus        81 f~~-~d~~~~~k~l~~f~k~~~--~~~~~gg~~eg~~l~~~~v  120 (157)
T cd05797          81 FSE-EDPVAAAKVLKDFAKENK--KLEIKGGVVEGKVLDAEEV  120 (157)
T ss_pred             EeC-CChHHHHHHHHHHHHhCC--CcEEEEEEECCEecCHHHH
Confidence            998 579899999999999987  7999999999999999865

L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in

>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=2e-29  Score=201.07  Aligned_cols=123  Identities=33%  Similarity=0.438  Sum_probs=116.1

Q ss_pred             hccChHHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCC-cEEEEEchHHHHHHHhCCCcccccccCcCcE
Q 030853           41 AAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN-TKLIVAKNTLVYKAIEGTQWEALKPCMSGMN  119 (170)
Q Consensus        41 ~~~~r~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~-~~i~VvKNtL~r~AL~~t~~e~L~~~l~G~~  119 (170)
                      |.+.+++|.++|++|++.|++|++++++||+|+++.|+++||++||+. ++++|+||||+++||++++++.|.++++||+
T Consensus         1 ~~~~~e~K~~~v~el~e~~~~s~~~~i~dy~Gl~~~ql~~lR~~lr~~g~~lkV~KNtL~~rAl~~~~~e~l~~~l~Gp~   80 (175)
T COG0244           1 MALAREWKKELVAELKELIKESPSVVIVDYRGLTVAQLTELRKKLREAGAKLKVVKNTLLRRALEEAGLEGLDDLLKGPT   80 (175)
T ss_pred             CCccHHHHHHHHHHHHHHHhhCCEEEEEEeCCCcHHHHHHHHHHHHhCCcEEEEEhhHHHHHHHHhcchhhHHHhccCCe
Confidence            457789999999999999999999999999999999999999999986 9999999999999999999999999999999


Q ss_pred             EEEEeeCCChHHHHHHHHHHhhhc-CCCcceeeEEEEcCeeecccccc
Q 030853          120 AWLFVHTEEIPAAIKPYRNFQKEK-KLEENDFAGAVFEGVGYWIGGDF  166 (170)
Q Consensus       120 alvFs~~d~~~~~~K~i~~f~K~~-~~~~l~ikgG~~dg~~ls~~~~~  166 (170)
                      +++|++ +||.+++|.+.+|+|.+ +  ++.++||++||..++.+++-
T Consensus        81 ai~fs~-~dp~~~~K~~~~f~k~~~~--~~~~~~~~~eg~~l~~~~v~  125 (175)
T COG0244          81 AIAFSN-EDPVAAAKLLKDFAKEAGD--KAPIKGGVPEGKVLGAAEVI  125 (175)
T ss_pred             EEEEec-CCHHHHHHHHHHHhhhhcc--cceEEEEEecCcccCHHHHH
Confidence            999998 57999999999999995 6  79999999999999887653

>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins

Probab=99.94  E-value=6.5e-27  Score=180.92  Aligned_cols=118  Identities=36%  Similarity=0.517  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCC-cEEEEEchHHHHHHHhCCCcccccccCcCcEEEEEe
Q 030853           46 TKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN-TKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFV  124 (170)
Q Consensus        46 ~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~-~~i~VvKNtL~r~AL~~t~~e~L~~~l~G~~alvFs  124 (170)
                      ++|.+++++++++|++|+.++++||++++++++++||++|++. ++++|+|||||++||++++++++.++|+|+++++|+
T Consensus         1 ~~K~~~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~~~~~~v~KNtl~~~Al~~t~~~~~~~~l~G~~~~~f~   80 (155)
T cd00379           1 EKKEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRESGAKLKVGKNTLMRRALKGTGFEELKPLLKGPTALAFT   80 (155)
T ss_pred             CchHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEEehHHHHHHHcCCCccchhhhCcCCEEEEEe
Confidence            4699999999999999999999999999999999999999988 999999999999999999999999999999999999


Q ss_pred             eCCChHHHHHHHHHHhhhcCCCcceeeEEEEcCeeecccccc
Q 030853          125 HTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGVGYWIGGDF  166 (170)
Q Consensus       125 ~~d~~~~~~K~i~~f~K~~~~~~l~ikgG~~dg~~ls~~~~~  166 (170)
                      + +||.+++|++.+|.+.++  ++.++||++||++++++++.
T Consensus        81 ~-~~~~~~~k~~~~~~k~~~--~~~~k~g~~~~~v~~~~~~~  119 (155)
T cd00379          81 N-EDPVEVAKVLKDFAKENK--KLFAKGGVVAGKVLDPAGVT  119 (155)
T ss_pred             C-CChHHHHHHHHHHHHhCC--CceEEEEEEcCEecCHHHHH
Confidence            7 578899999999999887  68999999999999988653

In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho

>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.93  E-value=3.7e-26  Score=165.59  Aligned_cols=98  Identities=35%  Similarity=0.576  Sum_probs=93.8

Q ss_pred             cChHHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCC-cEEEEEchHHHHHHHhCCCcc-cccccCcCcEE
Q 030853           43 ISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN-TKLIVAKNTLVYKAIEGTQWE-ALKPCMSGMNA  120 (170)
Q Consensus        43 ~~r~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~-~~i~VvKNtL~r~AL~~t~~e-~L~~~l~G~~a  120 (170)
                      |+|++|.+++++++++|++|+.+++++|+|++++++++||++|+++ ++++|+||+||++||++++++ +|.++|+|+++
T Consensus         1 m~~~~K~~~v~~~~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~~~~~~v~KN~l~~~Al~~~~~~~~l~~~l~G~~~   80 (100)
T PF00466_consen    1 MTKEKKEEIVEELKELLKKSKYVIVVDYNGLSANQLQELRKELRKKGGKFKVVKNTLMKKALKNTGFEEALSPLLKGPTA   80 (100)
T ss_dssp             -SCHHHHHHHHHHHHHHHCSSEEEEEECTTSCHHHHHHHHHHHHHHTEEEEECSHHHHHHHHHHHHTSSSSSCCTSSSEE
T ss_pred             CcHHHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcCcEEEEecHHHHHHHHhcCccccCccccccCCEE
Confidence            6799999999999999999999999999999999999999999988 999999999999999999998 89999999999


Q ss_pred             EEEeeCCChHHHHHHHHHHhh
Q 030853          121 WLFVHTEEIPAAIKPYRNFQK  141 (170)
Q Consensus       121 lvFs~~d~~~~~~K~i~~f~K  141 (170)
                      ++|++ +||.+++|++.+|+|
T Consensus        81 ~if~~-~d~~~~~k~l~~~~K  100 (100)
T PF00466_consen   81 LIFSN-EDPFEIAKILKKFAK  100 (100)
T ss_dssp             EEEES-SSHHHHHHHHHHSTT
T ss_pred             EEEEC-CCHHHHHHHHHHhcC
Confidence            99996 679999999999986

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....

>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4)

Probab=99.90  E-value=5.6e-24  Score=167.75  Aligned_cols=123  Identities=15%  Similarity=0.276  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCCcEEEEEchHHHHHHHhCCC-------cccccccCcCc
Q 030853           46 TKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQ-------WEALKPCMSGM  118 (170)
Q Consensus        46 ~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~~~i~VvKNtL~r~AL~~t~-------~e~L~~~l~G~  118 (170)
                      ++|.+++++|++.|++|+.+++++|+|++++|+++||+.||+. +++|+|||||++||++++       ++.|.++|+|+
T Consensus         1 e~K~~~v~~l~e~l~~y~~v~iv~~~gl~~~ql~~iR~~lr~~-~~~v~KNtl~~~Al~~~~~~~~~~~~~~L~~~l~G~   79 (163)
T cd05796           1 ELKQKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWKDS-RFFFGKNKVMQVALGRTPEDEYKPNLHKLSKYLKGQ   79 (163)
T ss_pred             ChHHHHHHHHHHHHHhCCEEEEEEecCCCHHHHHHHHHHhcCC-EEEEEchHHHHHHHhhCccccccccHHHHHHHhCCC
Confidence            4699999999999999999999999999999999999999987 999999999999999874       78899999999


Q ss_pred             EEEEEeeCCChHHHHHHHHHH-----hhhcC--CCcceeeEEEEcCeeeccccccccCC
Q 030853          119 NAWLFVHTEEIPAAIKPYRNF-----QKEKK--LEENDFAGAVFEGVGYWIGGDFAGSG  170 (170)
Q Consensus       119 ~alvFs~~d~~~~~~K~i~~f-----~K~~~--~~~l~ikgG~~dg~~ls~~~~~~~~~  170 (170)
                      ++++||+ +||.+++|++.+|     +|.+.  +..+.|..|-.+.-.-+....|+++|
T Consensus        80 ~~lift~-~dp~~v~k~l~~~~~~~~ar~G~iA~~dvvi~~G~~~~~p~~~~~~~~~lg  137 (163)
T cd05796          80 VGLLFTN-EPPEEVIEYFDSYSEPDFARAGSIATETVTLPEGPLEQFPHSMEPQLRKLG  137 (163)
T ss_pred             EEEEEEC-CCHHHHHHHHHHcCCcccccCCCCCCceEEEeCCCCCCCCCCcchHHHHcC
Confidence            9999998 6799999999984     44442  33477777755443333344566554

MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS

>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e

Probab=99.90  E-value=6e-24  Score=169.31  Aligned_cols=123  Identities=20%  Similarity=0.220  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCCcEEEEEchHHHHHHHhCCC-----cccccccCcCcEE
Q 030853           46 TKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQ-----WEALKPCMSGMNA  120 (170)
Q Consensus        46 ~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~~~i~VvKNtL~r~AL~~t~-----~e~L~~~l~G~~a  120 (170)
                      ++|.+++++|++.+++|+.+++++|+|++++++++||+.||+.++++|+|||||++||++++     ++.|.++|+|+++
T Consensus         1 ~~K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~~~~~~~~~L~~~l~G~~~   80 (175)
T cd05795           1 EWKKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRGKAEILMGKNTLIRRALRNLGDENPELEKLLPYLKGNVG   80 (175)
T ss_pred             ChHHHHHHHHHHHHHhCCEEEEEEecCCChHHHHHHHHHhhCCCEEEEechHHHHHHHHhcccccccHHHHHHHhcCCEE
Confidence            46999999999999999999999999999999999999999889999999999999999985     7889999999999


Q ss_pred             EEEeeCCChHHHHHHHHH-----HhhhcC--CCcceeeEEEEcCeeeccccccccCC
Q 030853          121 WLFVHTEEIPAAIKPYRN-----FQKEKK--LEENDFAGAVFEGVGYWIGGDFAGSG  170 (170)
Q Consensus       121 lvFs~~d~~~~~~K~i~~-----f~K~~~--~~~l~ikgG~~dg~~ls~~~~~~~~~  170 (170)
                      ++||+ +||.+++|++.+     |+|.+.  +..+.|..|..+ -.-++...|+++|
T Consensus        81 liFt~-~dp~~v~k~l~~~~~~~~ar~G~iA~~dvvi~~G~t~-~~p~~~~~~~~lg  135 (175)
T cd05795          81 FIFTN-GDPFEIRKILEENKVPAPAKPGAIAPCDVVVPAGPTG-MPPGPTSFFQALG  135 (175)
T ss_pred             EEEEC-CCHHHHHHHHHHcCCcccccCCCccCceEEEcCCCcC-CCCCchHHHHHcC
Confidence            99998 679999999997     455542  345788888664 2223334666655

P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.

>PRK04019 rplP0 acidic ribosomal protein P0; Validated

Probab=99.88  E-value=7.6e-23  Score=177.20  Aligned_cols=126  Identities=22%  Similarity=0.258  Sum_probs=107.9

Q ss_pred             ChHHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCCcEEEEEchHHHHHHHhCCC---cccccccCcCcEE
Q 030853           44 SRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQ---WEALKPCMSGMNA  120 (170)
Q Consensus        44 ~r~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~~~i~VvKNtL~r~AL~~t~---~e~L~~~l~G~~a  120 (170)
                      -+++|.++|++|++.|++|++++|+||+|++++|+++||+.||+.++++|+|||||++||++++   ++.|.++|+|+++
T Consensus         4 ~~e~K~~~v~el~~~l~~~~~v~iv~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~~~~~~~L~~~l~G~~a   83 (330)
T PRK04019          4 VPEWKKEEVEELKELIKSYPVVGIVDLEGIPARQLQEIRRKLRGKAELKVSKNTLIKRALEEAGEEDLEKLEDYLEGQVA   83 (330)
T ss_pred             hHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHcCCEEEEEehHHHHHHHHhcCcccHHHHHhhccCCEE
Confidence            4788999999999999999999999999999999999999999889999999999999999998   9999999999999


Q ss_pred             EEEeeCCChHHHHHHHHHHh-----hhcC--CCcceeeEEEEcCeeeccccccccCC
Q 030853          121 WLFVHTEEIPAAIKPYRNFQ-----KEKK--LEENDFAGAVFEGVGYWIGGDFAGSG  170 (170)
Q Consensus       121 lvFs~~d~~~~~~K~i~~f~-----K~~~--~~~l~ikgG~~dg~~ls~~~~~~~~~  170 (170)
                      ++||+ +||++++|++.+|.     |.+.  +..+.|..|..+.........|.++|
T Consensus        84 lift~-~dp~~v~k~l~~~~~~~~ak~G~iA~~divip~G~t~~~P~~~~~~l~~lg  139 (330)
T PRK04019         84 LIFTN-MNPFKLYKLLEKSKTPAPAKPGDIAPEDIVVPAGPTGFPPGPILSELQKLG  139 (330)
T ss_pred             EEEEC-CCHHHHHHHHHHcCCcccCCCCCCCCCeEEEcCCCCCCCCcccHHHHHHcC
Confidence            99998 67999999999854     4432  23477777766655544445555554

>PTZ00135 60S acidic ribosomal protein P0; Provisional

Probab=99.87  E-value=6.3e-22  Score=170.30  Aligned_cols=98  Identities=26%  Similarity=0.373  Sum_probs=92.4

Q ss_pred             ChHHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCCcEEEEEchHHHHHHHhCC-----CcccccccCcCc
Q 030853           44 SRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGT-----QWEALKPCMSGM  118 (170)
Q Consensus        44 ~r~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~~~i~VvKNtL~r~AL~~t-----~~e~L~~~l~G~  118 (170)
                      +|++|.+++++|++.|++|+.++|++|+|++++|+++||+.||++++++|+|||||++||+++     +++.|.++|+|+
T Consensus         6 ~re~K~~~v~~l~e~l~~y~~v~vv~~~nv~s~ql~~iR~~LR~~a~~~vgKNTL~r~AL~~~~~~~~~l~~L~~~LkG~   85 (310)
T PTZ00135          6 KKAKKKAYFEKLYELLEKYKKILIVSVDNVGSKQMQDIRRSLRGKAELLMGKNTLIRKALKQRLEELPELEKLLPHVKGN   85 (310)
T ss_pred             hHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhcCCEEEEEehHHHHHHHhhCcccccChHHHHhhccCC
Confidence            588899999999999999999999999999999999999999988999999999999999986     588999999999


Q ss_pred             EEEEEeeCCChHHHHHHHHHHhhh
Q 030853          119 NAWLFVHTEEIPAAIKPYRNFQKE  142 (170)
Q Consensus       119 ~alvFs~~d~~~~~~K~i~~f~K~  142 (170)
                      ++++||+ +|+.+++|++.+|.+.
T Consensus        86 ~gliFTn-~dp~ev~k~l~~~k~~  108 (310)
T PTZ00135         86 VGFVFTK-DDLFEVKPVILENKVP  108 (310)
T ss_pred             EEEEEEC-CCHHHHHHHHHHcCCc
Confidence            9999998 6799999999998764

>PTZ00240 60S ribosomal protein P0; Provisional

Probab=99.76  E-value=3.7e-18  Score=147.53  Aligned_cols=110  Identities=18%  Similarity=0.215  Sum_probs=93.9

Q ss_pred             ChHHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCCcEEEEEchHHHHHHHhCCC-------cccc-----
Q 030853           44 SRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQ-------WEAL-----  111 (170)
Q Consensus        44 ~r~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~~~i~VvKNtL~r~AL~~t~-------~e~L-----  111 (170)
                      .+++|.+++++|++++++|+.++||++.|++++|++++|+.||+.++++|+|||||++||++++       +++|     
T Consensus         4 ~~~~K~~~v~~l~~~l~~y~~v~Iv~~~nv~s~qlq~IR~~lrg~a~~~~GKNtlm~~AL~~~~~~~~~~~~~~ll~~~~   83 (323)
T PTZ00240          4 ITTAKREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRALRGKAEFVMGKKTLQAKIVEKRAQAKKASAEAKLFNDQC   83 (323)
T ss_pred             hhHHHHHHHHHHHHHHHhCCEEEEEEecCCCcHHHHHHHHHhhCCcEEEEecHHHHHHHHhhccccccchhHHHHhhhhc
Confidence            3456999999999999999999999999999999999999999889999999999999999763       4566     


Q ss_pred             --cccCcCcEEEEEeeCCChHHHHHHHHH-----HhhhcC--CCcceeeEEE
Q 030853          112 --KPCMSGMNAWLFVHTEEIPAAIKPYRN-----FQKEKK--LEENDFAGAV  154 (170)
Q Consensus       112 --~~~l~G~~alvFs~~d~~~~~~K~i~~-----f~K~~~--~~~l~ikgG~  154 (170)
                        .++++|+++++||+ +||.++.++|.+     ++|.+.  +..+.|..|-
T Consensus        84 ~~~~~l~GnvgliFTn-~~p~ev~~~l~~~k~~a~AraG~IAp~dVvvpaG~  134 (323)
T PTZ00240         84 EEKNLLSGNTGLIFTN-NEVQEITSVLDSHRVKAPARVGAIAPCDVIVPAGS  134 (323)
T ss_pred             cccccccCCEEEEEeC-CCHHHHHHHHHHcCCcccccCCCCCCceEEECCCC
Confidence              48999999999998 679999999987     445442  2346666663

>KOG0816 consensus Protein involved in mRNA turnover [RNA processing and modification]

Probab=99.63  E-value=1.8e-15  Score=122.26  Aligned_cols=130  Identities=15%  Similarity=0.261  Sum_probs=112.3

Q ss_pred             hhhccChHHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCCcEEEEEchHHHHHHHhCC-------Ccccc
Q 030853           39 IRAAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGT-------QWEAL  111 (170)
Q Consensus        39 ~~~~~~r~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~~~i~VvKNtL~r~AL~~t-------~~e~L  111 (170)
                      .+-...++.|+.++++|++.+++|+.++|++..||+..-+.+||.+|+ +++++++||++|.+||+.+       ++..+
T Consensus        14 kt~KKg~e~K~~i~~~ir~~vd~Y~~v~Vf~~~nMRn~~lk~iR~~~k-~sr~f~GknKVm~vaLG~~~~dE~~~~l~kl   92 (223)
T KOG0816|consen   14 KTAKKGKEKKEAIVEEIREAVDKYPYVFVFEVPNMRNTTLKEIRQDFK-NSRFFFGKNKVMQVALGRSREDEYKENLYKL   92 (223)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHhhCCeEEEEEcCCcchHHHHHHHHHhh-ccceecchhhHHHHHhcCCchhhHHHHHHHh
Confidence            444567999999999999999999999999999999999999999999 8999999999999999987       47788


Q ss_pred             cccCcCcEEEEEeeCCChHHHHHHHH-----HHhhhcC--CCcceeeEEEEcCeeeccccccccCC
Q 030853          112 KPCMSGMNAWLFVHTEEIPAAIKPYR-----NFQKEKK--LEENDFAGAVFEGVGYWIGGDFAGSG  170 (170)
Q Consensus       112 ~~~l~G~~alvFs~~d~~~~~~K~i~-----~f~K~~~--~~~l~ikgG~~dg~~ls~~~~~~~~~  170 (170)
                      ..+++|.++++||+ .+..++..++.     +|++.+.  ++.+.|..|.++...-+-+-+++++|
T Consensus        93 skll~G~~GLlFTd-~~keeV~e~f~sy~~~DyaR~g~vA~~Tv~ip~Gpl~~f~hsmEP~lRklg  157 (223)
T KOG0816|consen   93 SKLLKGSVGLLFTD-MSKEEVIEWFRSYVEEDYARAGDVAPETVTIPEGPLEQFAHSMEPQLRKLG  157 (223)
T ss_pred             hhhccCceEEEecC-CCHHHHHHHHHHHHHHhhhccCCcCcceEeecCcchhhcccccchhhHhhc
Confidence            99999999999997 55767777766     4677664  45688899999988887777777665

>KOG0815 consensus 60S acidic ribosomal protein P0 [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=1.7e-12  Score=106.37  Aligned_cols=98  Identities=20%  Similarity=0.303  Sum_probs=88.8

Q ss_pred             ccChHHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCCcEEEEEchHHHHHHHhCC-----CcccccccCc
Q 030853           42 AISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGT-----QWEALKPCMS  116 (170)
Q Consensus        42 ~~~r~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~~~i~VvKNtL~r~AL~~t-----~~e~L~~~l~  116 (170)
                      .-.+++|.....++.++|++|+.++++..+++.+.|++++|+.||+.+++.|+|||+||+|+.+.     .++.+.++++
T Consensus         4 ~~~~e~k~~y~~K~~~L~~~y~~~~~v~~dnv~s~ql~~ir~~lrg~a~vlmgkntm~rrair~~~~~~~~~~~llp~~~   83 (245)
T KOG0815|consen    4 ADKAEKKAVYFTKLRQLFEEYPKCFVVGADNVGSTQLQNIRKQLRGDAVVLMGKNTMMRRAIRGHLENNPALEKLLPVVK   83 (245)
T ss_pred             hhhhHHHHHHHHHHHHHHHhcCceEEEeecchhhHHHHHHHHHhcCceeeeechhHHHHHHHHhccCCcHHHHhhcccee
Confidence            34578899999999999999999999999999999999999999999999999999999999986     3688999999


Q ss_pred             CcEEEEEeeCCChHHHHHHHHHHh
Q 030853          117 GMNAWLFVHTEEIPAAIKPYRNFQ  140 (170)
Q Consensus       117 G~~alvFs~~d~~~~~~K~i~~f~  140 (170)
                      |+++++|++ .|..++-+.+.+..
T Consensus        84 g~vgfvftk-~~L~ei~~~i~~n~  106 (245)
T KOG0815|consen   84 GNVGFVFTK-GDLKEIRKEIIENK  106 (245)
T ss_pred             eceeEEEEe-ccHHHHHHHHHhcc
Confidence            999999999 45777777777663

>KOG4241 consensus Mitochondrial ribosomal protein L10 [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=3.2e-11  Score=98.35  Aligned_cols=112  Identities=14%  Similarity=0.148  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCC-cEEEEEchHHHHHHHhCCCcccccccCcCcEEEEEeeCCC
Q 030853           50 ETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN-TKLIVAKNTLVYKAIEGTQWEALKPCMSGMNAWLFVHTEE  128 (170)
Q Consensus        50 ~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~-~~i~VvKNtL~r~AL~~t~~e~L~~~l~G~~alvFs~~d~  128 (170)
                      -+..|+..+++++.++++|++..+++.++--.|.+|+++ ++++.+-|.+++.+++++.|+.|.++|.|+.+++|+. | 
T Consensus        77 ~~~re~~~v~~~~R~~Avcq~~~v~a~d~~~~r~QLrk~ni~~ksygnkIlk~~~~~t~y~~l~plfvgnh~ill~~-d-  154 (245)
T KOG4241|consen   77 SNLREDWMVREEFRVMAVCQFLPVPARDLWFARNQLRKKNIEFKSYGNKILKKIFDKTPYSSLNPLFVGNHAILLAK-D-  154 (245)
T ss_pred             HHHHHHHHHHhhhhheeeeecccCcHHHHHHHHHHHHhccchhhhchHHHHHHHHhcCchhhhhhheeccceEEEcC-C-
Confidence            356778889999999999999999999999999999987 9999999999999999999999999999999999997 4 


Q ss_pred             hHHHHHHHHHHhhhcCCCcceeeEEEEcCeeecccccc
Q 030853          129 IPAAIKPYRNFQKEKKLEENDFAGAVFEGVGYWIGGDF  166 (170)
Q Consensus       129 ~~~~~K~i~~f~K~~~~~~l~ikgG~~dg~~ls~~~~~  166 (170)
                      +. ..|.+....++-+  .+.+.||+++..+++..+..
T Consensus       155 ~~-kik~~lri~r~vP--~~~llgG~I~dtvlsRnqlv  189 (245)
T KOG4241|consen  155 IS-KIKSILRITRKVP--LVMLLGGRIVDTVLSRNQLV  189 (245)
T ss_pred             hH-HHHHHHHHHhhcc--hheecccchHHHHHHHHHHH
Confidence            43 4466666666656  68999999999999886543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	170
1zaw_A	180	Ribosomal Protein L10-L12(Ntd) Complex, Space Group		9e-06
1zav_A	180	Ribosomal Protein L10-L12(Ntd) Complex, Space Group		9e-06

>pdb|1ZAW|A Chain A, Ribosomal Protein L10-L12(Ntd) Complex, Space Group P212121, Form A Length = 180

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 62  CHLIAAIKYKGFTVKQFQDLRRSLPEN----TKLIVAKNTLVYKAIEGTQWEALKPCMSG 117
             LI    + GFTV    +LR  L E      +  V KNTL+  A++  ++E  +  + G
Sbjct: 22  TSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAEYEGYEEFLKG 81
Query: 118 MNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEG 157
             A L+V   +   A+K   NF K+KK + +   G   EG
Sbjct: 82  PTAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEG 121

>pdb|1ZAV|A Chain A, Ribosomal Protein L10-L12(Ntd) Complex, Space Group P21 Length = 180

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 62  CHLIAAIKYKGFTVKQFQDLRRSLPEN----TKLIVAKNTLVYKAIEGTQWEALKPCMSG 117
             LI    + GFTV    +LR  L E      +  V KNTL+  A++  ++E  +  + G
Sbjct: 22  TSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAEYEGYEEFLKG 81
Query: 118 MNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEG 157
             A L+V   +   A+K   NF K+KK + +   G   EG
Sbjct: 82  PTAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEG 121

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	170
1zav_A	180	50S ribosomal protein L10; ribosome structure and	4e-22
3sgf_H	165	50S ribosomal protein L10; typeii release factor b	8e-19
2j01_J	173	50S ribosomal protein L10; ribosome, tRNA, paromom	1e-16
3jsy_A	213	Acidic ribosomal protein P0 homolog; ribonucleopro	6e-13
1vq8_G	348	Acidic ribosomal protein P0 homolog; ribosome 50S,	4e-12
3u5i_q	312	A0, L10E, 60S acidic ribosomal protein P0; transla	3e-10
3a1y_G	284	Acidic ribosomal protein P0; stalk, helix SPIN, ri	3e-09
3iz5_S	178	60S ribosomal protein L18A (L18AE); eukaryotic rib	2e-07
2zkr_g	317	60S acidic ribosomal protein P0; protein-RNA compl	6e-07

>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A Length = 180

 Score = 86.6 bits (215), Expect = 4e-22
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 4/120 (3%)

Query: 42  AISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPE----NTKLIVAKNT 97
            ++R +KE  V  +    +   LI    + GFTV    +LR  L E      +  V KNT
Sbjct: 2   MLTRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNT 61

Query: 98  LVYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEG 157
           L+  A++  ++E  +  + G  A L+V   +   A+K   NF K+KK + +   G   EG
Sbjct: 62  LLNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEG 121

>3sgf_H 50S ribosomal protein L10; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 3uos_H 3j12_J* 3j0w_J* 3j0y_J* 3j11_J* 3j0t_J* 3j14_J* Length = 165

 Score = 77.7 bits (192), Expect = 8e-19
 Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 6/118 (5%)

Query: 42  AISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPE-NTKLIVAKNTLVY 100
           A++   K+  V  V    +          +G TV +  +LR++  E    + V +NTL+ 
Sbjct: 2   ALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLR 61

Query: 101 KAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKE-KKLEENDFAGAVFEG 157
           +A+EGT +E LK    G     +       AA + ++ F K   K E      A FEG
Sbjct: 62  RAVEGTPFECLKDAFVGPTLIAYSMEHPGAAA-RLFKEFAKANAKFE---VKAAAFEG 115

>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii} Length = 213

 Score = 63.2 bits (153), Expect = 6e-13
 Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 46  TKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIE- 104
             K E V T+K  +++  ++A +        Q Q++R  + +  KL +++NTL+ +A++ 
Sbjct: 3   PWKIEEVKTLKGLIKSKPVVAIVDMMDVPAPQLQEIRDKIRDKVKLRMSRNTLIIRALKE 62

Query: 105 ------GTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEE 147
                   +   L   +    A L           K Y+  ++ K    
Sbjct: 63  AAEELNNPKLAELANYVERGAAILVTDMN----PFKLYKLLEENKSPAP 107

>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ... Length = 348

 Score = 62.2 bits (150), Expect = 4e-12
 Identities = 22/109 (20%), Positives = 46/109 (42%), Gaps = 3/109 (2%)

Query: 45  RTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIE 104
              K+E VD +   +E+   +  +   G   +Q QD+RR L    +L V++NTL+ +A++
Sbjct: 13  PEWKQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERALD 72

Query: 105 GTQ--WEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFA 151
                 E L   ++G    +    +   +  +     +    +   + A
Sbjct: 73  DVDDGLEDLNGYITGQVGLIG-TDDNPFSLFQELEASKTPAPIGAGEVA 120

>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8 Length = 312

 Score = 56.3 bits (135), Expect = 3e-10
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 9/108 (8%)

Query: 42  AISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYK 101
              R KK E    ++ +LE    +  +     + +Q  ++R+ L     +++ KNT+V +
Sbjct: 2   GGIREKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRR 61

Query: 102 AIEGT-----QWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKK 144
           AI G       +E L P + G   ++F  T E    I         + 
Sbjct: 62  AIRGFLSDLPDFEKLLPFVKGNVGFVF--TNEPLTEI--KNVIVSNRV 105

>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii} Length = 284

 Score = 53.6 bits (128), Expect = 3e-09
 Identities = 18/119 (15%), Positives = 39/119 (32%), Gaps = 9/119 (7%)

Query: 42  AISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSL-PENTKLIVAKNTLVY 100
           A     K++ V+ +   +++  +IA +            +RR +      L V++NTL+ 
Sbjct: 2   AHVAEWKKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIE 61

Query: 101 KAIEGT-------QWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAG 152
            AI+         + E L   +      L           K  +  ++    +      
Sbjct: 62  LAIKKAAKELGKPELEKLVEYIDRGAGILV-TNMNPFKLYKFLQQNRQPAPAKPGAVVP 119

>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 317

 Score = 47.1 bits (111), Expect = 6e-07
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 45  RTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIE 104
            T K      +   L++      +       KQ Q +R SL     +++ KNT++ KAI 
Sbjct: 7   ATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIR 66

Query: 105 GTQ-----WEALKPCMSGMNAWLFVH 125
           G        E L P + G   ++F  
Sbjct: 67  GHLENNPALEKLLPHIRGNVGFVFTK 92

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	170
1zav_A	180	50S ribosomal protein L10; ribosome structure and	99.97
3sgf_H	165	50S ribosomal protein L10; typeii release factor b	99.97
2j01_J	173	50S ribosomal protein L10; ribosome, tRNA, paromom	99.97
3jsy_A	213	Acidic ribosomal protein P0 homolog; ribonucleopro	99.9
1vq8_G	348	Acidic ribosomal protein P0 homolog; ribosome 50S,	99.89
3u5i_q	312	A0, L10E, 60S acidic ribosomal protein P0; transla	99.89
3a1y_G	284	Acidic ribosomal protein P0; stalk, helix SPIN, ri	99.88
3j21_k	339	Acidic ribosomal protein P0 homolog; archaea, arch	99.86
2zkr_g	317	60S acidic ribosomal protein P0; protein-RNA compl	99.85
3iz5_s	319	60S acidic ribosomal protein P0 (L10P); eukaryotic	99.84

>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A

Probab=99.97  E-value=8.4e-32  Score=214.02  Aligned_cols=124  Identities=28%  Similarity=0.427  Sum_probs=115.6

Q ss_pred             ccChHHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCC----cEEEEEchHHHHHHHhCCCcccccccCcC
Q 030853           42 AISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN----TKLIVAKNTLVYKAIEGTQWEALKPCMSG  117 (170)
Q Consensus        42 ~~~r~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~----~~i~VvKNtL~r~AL~~t~~e~L~~~l~G  117 (170)
                      +|+|++|.++|++|++.|++|+.++++||+|++++|+++||++||+.    ++++|+|||||++|++++++++|.++|+|
T Consensus         2 ~m~~~~K~~~v~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~~~~g~~~~V~KNtL~~~Al~~~~~~~L~~~l~G   81 (180)
T 1zav_A            2 MLTRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAEYEGYEEFLKG   81 (180)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHHTTCCSCGGGCSS
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcccCCeEEEEehHHHHHHHHccCChhhHHHhCcC
Confidence            58899999999999999999999999999999999999999999864    99999999999999999999999999999


Q ss_pred             cEEEEEeeCCChHHHHHHHHHHhhhcCCCcceeeEEEEcCeeeccccc
Q 030853          118 MNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGVGYWIGGD  165 (170)
Q Consensus       118 ~~alvFs~~d~~~~~~K~i~~f~K~~~~~~l~ikgG~~dg~~ls~~~~  165 (170)
                      |++++|++++||.+++|++.+|+|++..+++.|+||++||++++.+++
T Consensus        82 ~~a~~fs~~~dp~~~ak~l~~f~k~~~~~~l~ikgg~~eg~~~~~~~v  129 (180)
T 1zav_A           82 PTAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEGKKFTAEEV  129 (180)
T ss_dssp             SEEEEEESSSCTHHHHHHHHHHHHHTTCCGGGEEEEEETTEEEEHHHH
T ss_pred             CEEEEEecCCCHHHHHHHHHHHHHhCCCCCeEEEEEEECCEEcCHHHH
Confidence            999999973468899999999999982127999999999999999865

>3sgf_H 50S ribosomal protein L10; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 3uos_H 3j12_J* 3j0w_J* 3j0y_J* 3j11_J* 3j0t_J* 3j14_J*

Probab=99.97  E-value=1.3e-33  Score=221.99  Aligned_cols=122  Identities=25%  Similarity=0.328  Sum_probs=117.1

Q ss_pred             hccChHHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCC-cEEEEEchHHHHHHHhCCCcccccccCcCcE
Q 030853           41 AAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN-TKLIVAKNTLVYKAIEGTQWEALKPCMSGMN  119 (170)
Q Consensus        41 ~~~~r~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~-~~i~VvKNtL~r~AL~~t~~e~L~~~l~G~~  119 (170)
                      |+|+|++|.++|++|++.|++|+.++++||+|++++|+++||++||+. ++++|+||||+++|++++++++|.++|+||+
T Consensus         1 m~~~r~~K~~~V~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~g~~~~V~KNtL~~~Al~~~~~~~L~~~l~G~t   80 (165)
T 3sgf_H            1 MALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRAVEGTPFECLKDAFVGPT   80 (165)
T ss_dssp             CCSHHHHHHHHHHHHHHHHSCSCEEECCCTTCCHHHHHHHTTTTTSSCCSSEECCCCTTTTTTTTTCTTTCTTCSTTCCS
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHHcCcEEEEECcHHHHHHHhcCCcchhHHhCcCCE
Confidence            788999999999999999999999999999999999999999999986 9999999999999999999999999999999


Q ss_pred             EEEEeeCCChHHHHHHHHHHhhhcCCCcceeeEEEEcCeeeccccc
Q 030853          120 AWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGVGYWIGGD  165 (170)
Q Consensus       120 alvFs~~d~~~~~~K~i~~f~K~~~~~~l~ikgG~~dg~~ls~~~~  165 (170)
                      +++|++ +||.+++|++.+|+|+++  ++.|+||++||++++.+++
T Consensus        81 ai~fs~-~dp~~~aK~l~~f~K~~~--~l~ikgg~~eg~~~~~~~v  123 (165)
T 3sgf_H           81 LIAYSM-EHPGAAARLFKEFAKANA--KFEVKAAAFEGELIPASQI  123 (165)
T ss_dssp             CCCEEE-ECSSCSHHHHHHHHHHGG--GSSSCCTTCCCCTTTTCCC
T ss_pred             EEEEeC-CCHHHHHHHHHHHHHhCC--CcEEEEEEEcCEEeCHHHH
Confidence            999998 568899999999999987  7999999999999998876

>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}

Probab=99.90  E-value=5e-24  Score=173.48  Aligned_cols=110  Identities=17%  Similarity=0.190  Sum_probs=97.9

Q ss_pred             hHHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCCcEEEEEchHHHHHHHhCC-------CcccccccCcC
Q 030853           45 RTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGT-------QWEALKPCMSG  117 (170)
Q Consensus        45 r~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~~~i~VvKNtL~r~AL~~t-------~~e~L~~~l~G  117 (170)
                      +++|.++|++|++.+++|+.++++||+|++++|+++||++||+.++++|+|||||++|++++       +++.|.++|+|
T Consensus         2 ~e~K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~r~Al~~~~~~e~~~~~~~L~~~l~G   81 (213)
T 3jsy_A            2 APWKIEEVKTLKGLIKSKPVVAIVDMMDVPAPQLQEIRDKIRDKVKLRMSRNTLIIRALKEAAEELNNPKLAELANYVER   81 (213)
T ss_dssp             CHHHHHHHHHHHHHHHHSSEEEEEECCSCCHHHHHHHHHHHTTTEEEEECCHHHHHHHHHHHHHHTTCGGGGGGGGGCCS
T ss_pred             chHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCCEEEEEeHHHHHHHHhhchhhhcccchhHHHHhCcC
Confidence            46799999999999999999999999999999999999999987999999999999999998       89999999999


Q ss_pred             cEEEEEeeCCChHHHHHHHHHHh-----hhcC--CCcceeeEEEE
Q 030853          118 MNAWLFVHTEEIPAAIKPYRNFQ-----KEKK--LEENDFAGAVF  155 (170)
Q Consensus       118 ~~alvFs~~d~~~~~~K~i~~f~-----K~~~--~~~l~ikgG~~  155 (170)
                      +++++||+ +||.+++|+|.+|.     +.+.  +..+.+..|..
T Consensus        82 ~~~l~Ft~-~dp~~v~k~l~~~~~~~~Ar~GaiAp~dV~ip~G~t  125 (213)
T 3jsy_A           82 GAAILVTD-MNPFKLYKLLEENKSPAPVRGGQIAPCDIKVEKGST  125 (213)
T ss_dssp             SEEEEEES-SCHHHHHHHHHHSCEEECCCTTCBCSSCEEECSEEE
T ss_pred             CeEEEEeC-CCHHHHHHHHHHcCCcccccCCCcCCceEEECCCCC
Confidence            99999998 67999999999874     3332  23466777655

>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...

Probab=99.89  E-value=2.2e-24  Score=186.76  Aligned_cols=122  Identities=20%  Similarity=0.254  Sum_probs=28.7

Q ss_pred             hhhhccChHHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCCcEEEEEchHHHHHHHhCCC--cccccccC
Q 030853           38 HIRAAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGTQ--WEALKPCM  115 (170)
Q Consensus        38 ~~~~~~~r~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~~~i~VvKNtL~r~AL~~t~--~e~L~~~l  115 (170)
                      +..|.+.+++|.++|++|++.|++|+.++++||+||+++|+++||++||+.++++|+|||||++||++++  ++.|.++|
T Consensus         6 ~~~~k~~~e~K~~~V~eL~e~l~~~~~v~vvdy~GLtv~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~le~L~~~L   85 (348)
T 1vq8_G            6 ERKTETIPEWKQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERALDDVDDGLEDLNGYI   85 (348)
T ss_dssp             ------CCHHHHHHHHHHHHHHHC---------------------------------CHHHHHHHHTC------------
T ss_pred             hhcccccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHHhcceEEEeHHHHHHHHHHhCCcchHHHHHhc
Confidence            4557788999999999999999999999999999999999999999999779999999999999999998  89999999


Q ss_pred             cCcEEEEEeeCCChHHHHHHHHHHhhhcCCCcceeeEEEEcCeeecccc
Q 030853          116 SGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGVGYWIGG  164 (170)
Q Consensus       116 ~G~~alvFs~~d~~~~~~K~i~~f~K~~~~~~l~ikgG~~dg~~ls~~~  164 (170)
                      +|+++++|++ +||.+++|++.+|.+.    .+..+|++.++.++-+++
T Consensus        86 kG~tal~Ft~-~Dp~~vaK~l~~f~~~----~pAr~GaiAp~dV~IpaG  129 (348)
T 1vq8_G           86 TGQVGLIGTD-DNPFSLFQELEASKTP----APIGAGEVAPNDIVIPEG  129 (348)
T ss_dssp             -------------------------------------------------
T ss_pred             cCCEEEEEeC-CCHHHHHHHHHHhccc----chhhcCCcCCceEEeCCC
Confidence            9999999998 5688999999999754    345677777776665543

>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8

Probab=99.89  E-value=5.5e-23  Score=175.74  Aligned_cols=99  Identities=22%  Similarity=0.366  Sum_probs=92.6

Q ss_pred             hccChHHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCCcEEEEEchHHHHHHHhC-----CCcccccccC
Q 030853           41 AAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEG-----TQWEALKPCM  115 (170)
Q Consensus        41 ~~~~r~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~~~i~VvKNtL~r~AL~~-----t~~e~L~~~l  115 (170)
                      |.++|++|.++|++|++.|++|+.++|+||+||+++|+++||++||+.+.++|+|||||++|+++     .+++.|.++|
T Consensus         1 M~~~re~K~~~v~el~e~l~~~~~v~vv~~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~~~~le~L~~~L   80 (312)
T 3u5i_q            1 MGGIREKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFEKLLPFV   80 (312)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHCSEEEEEECSSCCHHHHHHHHHHHSSSCEEEECCHHHHHHHHHTTSSSSCGGGGTGGGC
T ss_pred             CCCcHHHHHHHHHHHHHHHHhCCEEEEEecCCCCHHHHHHHHHHHhcCceEEEeehHHHHHHHhhCcccccChHHHHHhc
Confidence            67889999999999999999999999999999999999999999998889999999999999999     4899999999


Q ss_pred             cCcEEEEEeeCCChHHHHHHHHHHh
Q 030853          116 SGMNAWLFVHTEEIPAAIKPYRNFQ  140 (170)
Q Consensus       116 ~G~~alvFs~~d~~~~~~K~i~~f~  140 (170)
                      +|+++++||+ +||.+++|+|.+|.
T Consensus        81 ~G~~gl~Ft~-~dp~~v~k~l~~~k  104 (312)
T 3u5i_q           81 KGNVGFVFTN-EPLTEIKNVIVSNR  104 (312)
T ss_dssp             CSSEEEEEES-SCHHHHHHHHHTSS
T ss_pred             cCCEEEEEEC-CCHHHHHHHHHhcc
Confidence            9999999998 67999999999874

>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}

Probab=99.88  E-value=7.9e-24  Score=178.69  Aligned_cols=114  Identities=20%  Similarity=0.175  Sum_probs=93.0

Q ss_pred             ccChHHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCC-cEEEEEchHHHHHHHhCCC-------cccccc
Q 030853           42 AISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN-TKLIVAKNTLVYKAIEGTQ-------WEALKP  113 (170)
Q Consensus        42 ~~~r~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~-~~i~VvKNtL~r~AL~~t~-------~e~L~~  113 (170)
                      ...+++|.++|++|++.|++|+.++++||+||+++|+++||++||+. ++++|+|||||++||++++       +++|.+
T Consensus         2 ~~~~e~K~~~v~el~~~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~g~~~~v~KNtL~~~Al~~~~~~~~~~~~~~L~~   81 (284)
T 3a1y_G            2 AHVAEWKKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVE   81 (284)
T ss_dssp             CSSCCCTTTHHHHHHHHHTTCSEEEEEECTTCCHHHHHHHHHHHHHTTEEEEECSSSSCCHHHHHHHTTCSCSSTTSSSC
T ss_pred             CCcHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHhcCcEEEEeHHHHHHHHHhhCccccccccHHHHhh
Confidence            34678899999999999999999999999999999999999999977 9999999999999999875       999999


Q ss_pred             cCcCcEEEEEeeCCChHHHHHHHHHHhhhcCCCcceeeEEEEcCeee
Q 030853          114 CMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGVGY  160 (170)
Q Consensus       114 ~l~G~~alvFs~~d~~~~~~K~i~~f~K~~~~~~l~ikgG~~dg~~l  160 (170)
                      +|+|+++++||+ +||.+++|++.+|...    .+..+|++.++.++
T Consensus        82 ~l~G~~al~Ft~-~dp~~vak~l~~f~~~----~~ar~Gaia~~dv~  123 (284)
T 3a1y_G           82 YIDRGAGILVTN-MNPFKLYKFLQQNRQP----APAKPGAVVPKDVV  123 (284)
T ss_dssp             CCCTTEEEEEES-SCHHHHHHHHHHCCCC------------------
T ss_pred             hcCCCEEEEEEC-CCHHHHHHHHHHhcch----hhhhcCCccceeEE
Confidence            999999999998 6799999999998643    34456666655443

>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.86  E-value=5.1e-23  Score=177.68  Aligned_cols=115  Identities=17%  Similarity=0.171  Sum_probs=97.9

Q ss_pred             hccChHHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCC-cEEEEEchHHHHHHHhCC-------Cccccc
Q 030853           41 AAISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPEN-TKLIVAKNTLVYKAIEGT-------QWEALK  112 (170)
Q Consensus        41 ~~~~r~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~-~~i~VvKNtL~r~AL~~t-------~~e~L~  112 (170)
                      |+..+++|.++|++|++.|++|+.++|+||+||+++|+++||++||+. ++++|+|||||++|++++       +++.|.
T Consensus         1 m~~~~e~K~~~v~el~e~l~~~~~v~v~~~~gl~v~ql~~lR~~lr~~g~~~~v~KNtL~r~Al~~~~~~e~~~~l~~L~   80 (339)
T 3j21_k            1 MAHVAEWKKKEVEELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELGKPELEKLI   80 (339)
T ss_dssp             -----CCTTTHHHHHHHHHHHSSEEEEEECTTCCTTHHHHHHHHHHHTTEEEECCHHHHSCHHHHHHHSSCCCSSSSSSS
T ss_pred             CCccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEhHHHHHHHHhcChhhhccccHHHHH
Confidence            455688899999999999999999999999999999999999999987 899999999999999987       689999


Q ss_pred             ccCcCcEEEEEeeCCChHHHHHHHHHHhh-----hcC--CCcceeeEEEEc
Q 030853          113 PCMSGMNAWLFVHTEEIPAAIKPYRNFQK-----EKK--LEENDFAGAVFE  156 (170)
Q Consensus       113 ~~l~G~~alvFs~~d~~~~~~K~i~~f~K-----~~~--~~~l~ikgG~~d  156 (170)
                      ++|+|+++++||+ +||.+++|+|.+|..     .+.  +..+.|..|...
T Consensus        81 ~~L~G~~~l~Ft~-~dp~~v~k~l~~~~~~~~Ar~GaiAp~dV~Ip~G~t~  130 (339)
T 3j21_k           81 NYIEGGAGILVTT-MNPFKLYKFLQQNRQPAPAKPGAKVPKDVVIPAGPTS  130 (339)
T ss_dssp             CCCCTTEEEEEES-SCHHHHHHHHHHSCCCCCCCTTCBCSSCEEECCEECS
T ss_pred             HHhcCCeEEEEEC-CCHHHHHHHHHHcCCcccccCCCcCCceEEecCCCCC
Confidence            9999999999998 679999999998743     331  234677777553

>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.85  E-value=2.8e-23  Score=177.87  Aligned_cols=98  Identities=22%  Similarity=0.267  Sum_probs=0.0

Q ss_pred             ChHHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCCCcEEEEEchHHHHHHHhCC-----CcccccccCcCc
Q 030853           44 SRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLVYKAIEGT-----QWEALKPCMSGM  118 (170)
Q Consensus        44 ~r~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~~~~i~VvKNtL~r~AL~~t-----~~e~L~~~l~G~  118 (170)
                      .+++|.++|++|++.|++|+.++|+||+||+++|+++||++||+.++++|+|||||++||+++     +++.|.++|+|+
T Consensus         6 ~~e~K~~~V~eL~e~l~~~~~v~vvd~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~~~~~e~L~~~L~G~   85 (317)
T 2zkr_g            6 RATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLPHIRGN   85 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhcCcEEEEEeHHHHHHHHhhCcccccchhhhhhccCCC
Confidence            578899999999999999999999999999999999999999987999999999999999999     899999999999


Q ss_pred             EEEEEeeCCChHHHHHHHHHHhhh
Q 030853          119 NAWLFVHTEEIPAAIKPYRNFQKE  142 (170)
Q Consensus       119 ~alvFs~~d~~~~~~K~i~~f~K~  142 (170)
                      ++++||+ +||.+++|++.+|...
T Consensus        86 ~al~Ft~-~Dp~~vaK~l~~f~~~  108 (317)
T 2zkr_g           86 VGFVFTK-EDLTEIRDMLLANKVP  108 (317)
T ss_dssp             ------------------------
T ss_pred             EEEEEEC-CCHHHHHHHHHHhCcc
Confidence            9999998 5688999999987643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	170
d1zava1	177	d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermot	1e-18

>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]} Length = 177

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Ribosomal protein L10-like
family: Ribosomal protein L10-like
domain: Ribosomal protein L10
species: Thermotoga maritima [TaxId: 2336]

 Score = 76.2 bits (187), Expect = 1e-18
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 4/122 (3%)

Query: 43  ISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPE----NTKLIVAKNTL 98
           ++R +KE  V  +    +   LI    + GFTV    +LR  L E      +  V KNTL
Sbjct: 2   LTRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTL 61

Query: 99  VYKAIEGTQWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGV 158
           +  A++  ++E  +  + G  A L+V   +   A+K   NF K+KK + +   G   EG 
Sbjct: 62  LNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEGK 121

Query: 159 GY 160
            +
Sbjct: 122 KF 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	170
d1zava1	177	Ribosomal protein L10 {Thermotoga maritima [TaxId:	99.97

>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Ribosomal protein L10-like
family: Ribosomal protein L10-like
domain: Ribosomal protein L10
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=2.3e-30  Score=203.14  Aligned_cols=124  Identities=28%  Similarity=0.426  Sum_probs=116.4

Q ss_pred             ccChHHHHHHHHHHHHHHhhCCeEEEEEeCCCChhHHHHHHHhcCC----CcEEEEEchHHHHHHHhCCCcccccccCcC
Q 030853           42 AISRTKKEETVDTVKTHLENCHLIAAIKYKGFTVKQFQDLRRSLPE----NTKLIVAKNTLVYKAIEGTQWEALKPCMSG  117 (170)
Q Consensus        42 ~~~r~~K~~~v~el~e~~~~s~~v~v~~~~~lta~q~~~LRk~Lr~----~~~i~VvKNtL~r~AL~~t~~e~L~~~l~G  117 (170)
                      +|+|++|+++|+++++.|++++.++++||+|++++++++||++||+    +++++|+||||+++|+++++++.+.++|.|
T Consensus         1 mm~r~~K~~~v~~l~~~l~~s~~vv~~~y~gLtv~e~~~LR~~lre~~~~g~~~kV~KNtL~k~Al~~t~~~~l~~~l~g   80 (177)
T d1zava1           1 MLTRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAEYEGYEEFLKG   80 (177)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHHTTCCSCGGGCSS
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCEEEEEecCCCCHHHHHHHHHHHHHhccCCeEEEEechHHHHHHHhcCCcchhhHHHhh
Confidence            5899999999999999999999999999999999999999999974    489999999999999999999999999999


Q ss_pred             cEEEEEeeCCChHHHHHHHHHHhhhcCCCcceeeEEEEcCeeeccccc
Q 030853          118 MNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGVGYWIGGD  165 (170)
Q Consensus       118 ~~alvFs~~d~~~~~~K~i~~f~K~~~~~~l~ikgG~~dg~~ls~~~~  165 (170)
                      +++++|+.++||.+++|++.+|+|+++.+.+.++||++||++++.+++
T Consensus        81 ~~a~~~~~~~d~~~~aK~l~~f~k~~k~~~~~i~gg~~eg~~l~~~~i  128 (177)
T d1zava1          81 PTAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEGKKFTAEEV  128 (177)
T ss_dssp             SEEEEEESSSCTHHHHHHHHHHHHHTTCCGGGEEEEEETTEEEEHHHH
T ss_pred             ccceeeeecCCchhhhhHHHHHhhhccccccceeEEEecCcccCHHHH
Confidence            999999866789999999999999886446899999999999999875