Citrus Sinensis ID: 030856

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Protein Sequence
MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI
Secondary Structure (PSIPRED)
ccccccccEEcEEEEccccccHHHHHHHHccccccccccccccEEEEEEEEEEccEEEEEEEEEcccccccccccHHHHHcccEEEEEEEccccHHHHcHHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccHHcEEEEEEEEccccccHHHHHHHHHHcccccccccccccEEEEEEEEccccEEEEEEEEccccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEcHHHHHHccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAPVSALAKYKLVflgdqsvgktSIITRFMydkfdntyqaTIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIpsyirdssVAVVVYDVASrqsflntsKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAkagfnikgcsptirrli
Flexible Loop (DISEMBL)
MAPVSALAKYKlvflgdqsvgktSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSlipsyirdsSVAVVVYDVasrqsflntskwidevrtergsdviivlvgnktdlvekrqvsieegeaksrelNVMFIEtsakagfnikgcsptirrli
Low Complexity Region (SEG)
MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRdssvavvvydvasRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI
Disordered region (IsUnstruct)
*****ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR*************LNVMFIETSAKAGFNIKGC********
Disordered Region (DISOPRED)
*****AL*KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI
Disordered Region (DISEMBL)
MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI
Disordered Region (DISPRO)
***VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	170	2.2.26 [Sep-21-2011]
O80501	208	Ras-related protein RABH1	yes	no	0.947	0.774	0.956	3e-87
Q9LFT9	207	Ras-related protein RABH1	no	no	0.976	0.801	0.869	1e-80
Q9SID8	207	Ras-related protein RABH1	no	no	0.976	0.801	0.875	5e-80
Q9SMR4	214	Ras-related protein RABH1	no	no	0.947	0.752	0.851	1e-74
Q5RAV6	208	Ras-related protein Rab-6	yes	no	0.917	0.75	0.839	2e-73
P20340	208	Ras-related protein Rab-6	yes	no	0.917	0.75	0.839	2e-73
Q9WVB1	208	Ras-related protein Rab-6	yes	no	0.917	0.75	0.839	2e-73
P35279	208	Ras-related protein Rab-6	yes	no	0.917	0.75	0.839	2e-73
P34213	205	Ras-related protein Rab-6	yes	no	0.917	0.760	0.826	3e-73
Q1KME6	208	Ras-related protein Rab-6	yes	no	0.917	0.75	0.826	7e-73

>sp|O80501|RAH1B_ARATH Ras-related protein RABH1b OS=Arabidopsis thaliana GN=RABH1B PE=1 SV=1

 Score =  320 bits (819), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 154/161 (95%), Positives = 159/161 (98%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVASRQSFLNT+KWIDEVRTERGSDVI+VLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG 161
           GNKTDLV+KRQVSIEE EAK+RELNVMFIETSAKAGFNIK 
Sbjct: 121 GNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIKA 161

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER). Binds GTP and GDP and possesses intrinsic GTPase activity.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFT9|RAH1E_ARATH Ras-related protein RABH1e OS=Arabidopsis thaliana GN=RABH1E PE=2 SV=1

 Score =  298 bits (762), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 147/169 (86%), Positives = 158/169 (93%), Gaps = 3/169 (1%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA VS LAKYKLVFLGDQSVGKTSIITRFMYDKFD TYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVA+RQSFLNTSKWI++VRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSKWIEDVRTERGSDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL 169
           GNKTDLV+KRQVSIEEG+ K+R+  V+FIETSAKAGFNIK   P  R++
Sbjct: 121 GNKTDLVDKRQVSIEEGDNKARDYGVIFIETSAKAGFNIK---PLFRKI 166

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SID8|RAH1D_ARATH Ras-related protein RABH1d OS=Arabidopsis thaliana GN=RABH1D PE=3 SV=1

 Score =  296 bits (757), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 148/169 (87%), Positives = 154/169 (91%), Gaps = 3/169 (1%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA VS LAKYKLVFLGDQSVGKTSIITRFMYDKFD TYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA+R SFLNTSKWI+EVR ER  DVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRLSFLNTSKWIEEVRNERAGDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL 169
           GNKTDLVEKRQVSIEEG++K RE  VMFIETSAKAGFNIK   P  R++
Sbjct: 121 GNKTDLVEKRQVSIEEGDSKGREYGVMFIETSAKAGFNIK---PLFRKI 166

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMR4|RAH1C_ARATH Ras-related protein RABH1c OS=Arabidopsis thaliana GN=RABH1C PE=1 SV=1

 Score =  278 bits (712), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 138/162 (85%), Positives = 147/162 (90%), Gaps = 1/162 (0%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA VS LAK+KLVFLGDQSVGKTSIITRFMYDKFD TYQ TIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MASVSPLAKFKLVFLGDQSVGKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVL 119
           QLWDTAGQERFRSLIPSYIRDSSVA+VVYDV++RQ+FLNTSKWI++V  ERG S+VIIVL
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVL 120

Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG 161
           VGNKTDLVEKRQVSI EGE K +E  VMFIETSAK  FNIK 
Sbjct: 121 VGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIKA 162

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Arabidopsis thaliana (taxid: 3702)

>sp|Q5RAV6|RAB6A_PONAB Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6A PE=2 SV=3

 Score =  274 bits (700), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 131/156 (83%), Positives = 146/156 (93%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+VAVVVYD+ +  SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 69  TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Pongo abelii (taxid: 9601)

>sp|P20340|RAB6A_HUMAN Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3

 Score =  274 bits (700), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 131/156 (83%), Positives = 146/156 (93%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+VAVVVYD+ +  SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 69  TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER). Has a low GTPase activity.

Homo sapiens (taxid: 9606)

>sp|Q9WVB1|RAB6A_RAT Ras-related protein Rab-6A OS=Rattus norvegicus GN=Rab6a PE=2 SV=2

 Score =  274 bits (700), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 131/156 (83%), Positives = 146/156 (93%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+VAVVVYD+ +  SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 69  TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Rattus norvegicus (taxid: 10116)

>sp|P35279|RAB6A_MOUSE Ras-related protein Rab-6A OS=Mus musculus GN=Rab6a PE=1 SV=4

 Score =  274 bits (700), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 131/156 (83%), Positives = 146/156 (93%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+VAVVVYD+ +  SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 69  TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Mus musculus (taxid: 10090)

>sp|P34213|RAB6A_CAEEL Ras-related protein Rab-6.1 OS=Caenorhabditis elegans GN=rab-6.1 PE=2 SV=1

 Score =  273 bits (699), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 129/156 (82%), Positives = 144/156 (92%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           +AL K+KLVFLG+QSVGKTSIITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWD
Sbjct: 7   NALKKFKLVFLGEQSVGKTSIITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 66

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDSSVAVVVYD+ +  SF  T+KW+D+VR ERG DVIIVLVGNKT
Sbjct: 67  TAGQERFRSLIPSYIRDSSVAVVVYDITNANSFHQTTKWVDDVRNERGCDVIIVLVGNKT 126

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVS E+GE K+R+LNVMFIETSAKAG+N+K
Sbjct: 127 DLADKRQVSTEDGEKKARDLNVMFIETSAKAGYNVK 162

Protein transport. Probably involved in vesicular traffic.

Caenorhabditis elegans (taxid: 6239)

>sp|Q1KME6|RAB6A_CHICK Ras-related protein Rab-6A OS=Gallus gallus GN=RAB6A PE=2 SV=3

 Score =  272 bits (696), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 129/156 (82%), Positives = 145/156 (92%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 68

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+ AVVVYD+ +  SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 69  TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
225427294	208	PREDICTED: ras-related protein RABH1b [V	0.947	0.774	0.975	1e-86
224126375	208	predicted protein [Populus trichocarpa]	0.976	0.798	0.928	5e-86
356497062	207	PREDICTED: ras-related protein RABH1b-li	0.947	0.777	0.962	7e-86
449461547	208	PREDICTED: ras-related protein RABH1b-li	0.947	0.774	0.962	1e-85
357482281	226	Ras-related protein Rab-6 [Medicago trun	0.947	0.712	0.956	1e-85
623586	208	putative [Nicotiana tabacum]	0.976	0.798	0.928	1e-85
15224916	208	Ras-related protein RABH1B [Arabidopsis	0.947	0.774	0.956	1e-85
255571107	208	protein with unknown function [Ricinus c	0.947	0.774	0.962	2e-85
255575776	208	protein with unknown function [Ricinus c	0.947	0.774	0.956	2e-85
225453266	208	PREDICTED: ras-related protein RABH1b [V	0.947	0.774	0.956	3e-85

>gi|225427294|ref|XP_002281823.1| PREDICTED: ras-related protein RABH1b [Vitis vinifera] gi|147782540|emb|CAN75036.1| hypothetical protein VITISV_014840 [Vitis vinifera]

 Score =  323 bits (829), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 157/161 (97%), Positives = 160/161 (99%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVASRQSFLNTSKWI+EVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTSKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG 161
           GNKTDLVEKRQVSIEEGEAK+RELNVMFIETSAKAGFNIK 
Sbjct: 121 GNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKA 161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126375|ref|XP_002329538.1| predicted protein [Populus trichocarpa] gi|222870247|gb|EEF07378.1| predicted protein [Populus trichocarpa]

 Score =  321 bits (823), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 157/169 (92%), Positives = 164/169 (97%), Gaps = 3/169 (1%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT+RL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTIRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+V+DVASRQSFLNTSKWI+EVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQSFLNTSKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL 169
           GNKTDLVEKRQVSIEEGEAK+RELNVMFIETSAKAGFNIK   P  R++
Sbjct: 121 GNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIK---PLFRKI 166

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497062|ref|XP_003517383.1| PREDICTED: ras-related protein RABH1b-like [Glycine max]

 Score =  321 bits (822), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 155/161 (96%), Positives = 160/161 (99%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVASRQ+FLNT+KWI+EVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTAKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG 161
           GNKTDLVEKRQVSIEEGEAK+RELNVMFIETSAKAGFNIK 
Sbjct: 121 GNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKA 161

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461547|ref|XP_004148503.1| PREDICTED: ras-related protein RABH1b-like [Cucumis sativus] gi|449528471|ref|XP_004171228.1| PREDICTED: ras-related protein RABH1b-like [Cucumis sativus]

 Score =  320 bits (821), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 155/161 (96%), Positives = 159/161 (98%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAP SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPTSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVASRQ+FLNTSKWI+EVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTSKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG 161
           GNKTDLVEKRQVSIEEGEAK+RELNVMFIETSAKAGFNIK 
Sbjct: 121 GNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKA 161

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482281|ref|XP_003611426.1| Ras-related protein Rab-6 [Medicago truncatula] gi|355512761|gb|AES94384.1| Ras-related protein Rab-6 [Medicago truncatula]

 Score =  320 bits (820), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 154/161 (95%), Positives = 160/161 (99%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVASRQ+FLNT+KWI+EVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTTKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG 161
           GNKTDLVEKRQVSIE+GEAK+RELNVMFIETSAKAGFNIK 
Sbjct: 121 GNKTDLVEKRQVSIEDGEAKARELNVMFIETSAKAGFNIKA 161

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|623586|gb|AAA74117.1| putative [Nicotiana tabacum]

 Score =  320 bits (820), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 157/169 (92%), Positives = 162/169 (95%), Gaps = 3/169 (1%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTV L
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVAL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVASRQSFLNTSKWI+EVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTSKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL 169
           GNKTDLVEKRQVSIEE EAK+RELNVMFIETSAKAGFNIK   P  R++
Sbjct: 121 GNKTDLVEKRQVSIEEAEAKARELNVMFIETSAKAGFNIK---PLFRKI 166

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224916|ref|NP_181989.1| Ras-related protein RABH1B [Arabidopsis thaliana] gi|297828175|ref|XP_002881970.1| hypothetical protein ARALYDRAFT_903887 [Arabidopsis lyrata subsp. lyrata] gi|75318653|sp|O80501.1|RAH1B_ARATH RecName: Full=Ras-related protein RABH1b; Short=AtRABH1b; AltName: Full=Ras-related protein Rab6A; Short=AtRab6A gi|3341681|gb|AAC27463.1| putative small GTP-binding protein [Arabidopsis thaliana] gi|21593488|gb|AAM65455.1| putative small GTP-binding protein [Arabidopsis thaliana] gi|107738267|gb|ABF83670.1| At2g44610 [Arabidopsis thaliana] gi|110742258|dbj|BAE99055.1| putative small GTP-binding protein [Arabidopsis thaliana] gi|297327809|gb|EFH58229.1| hypothetical protein ARALYDRAFT_903887 [Arabidopsis lyrata subsp. lyrata] gi|330255353|gb|AEC10447.1| Ras-related protein RABH1B [Arabidopsis thaliana] gi|741994|prf||2008312A GTP-binding protein

 Score =  320 bits (819), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 154/161 (95%), Positives = 159/161 (98%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVASRQSFLNT+KWIDEVRTERGSDVI+VLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG 161
           GNKTDLV+KRQVSIEE EAK+RELNVMFIETSAKAGFNIK 
Sbjct: 121 GNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIKA 161

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571107|ref|XP_002526504.1| protein with unknown function [Ricinus communis] gi|223534179|gb|EEF35895.1| protein with unknown function [Ricinus communis]

 Score =  320 bits (819), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 155/161 (96%), Positives = 160/161 (99%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVASRQSFLNTSKWI+EVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTSKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG 161
           GNKTDLV+KRQVSIEEGEAK+R+LNVMFIETSAKAGFNIK 
Sbjct: 121 GNKTDLVDKRQVSIEEGEAKARDLNVMFIETSAKAGFNIKA 161

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575776|ref|XP_002528787.1| protein with unknown function [Ricinus communis] gi|223531790|gb|EEF33609.1| protein with unknown function [Ricinus communis]

 Score =  319 bits (818), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 154/161 (95%), Positives = 160/161 (99%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+V+DVASRQ+FLNTSKWI+EVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQTFLNTSKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG 161
           GNKTDLVEKRQVSIEEGEAK+R+LNVMFIETSAKAGFNIK 
Sbjct: 121 GNKTDLVEKRQVSIEEGEAKARDLNVMFIETSAKAGFNIKA 161

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453266|ref|XP_002266653.1| PREDICTED: ras-related protein RABH1b [Vitis vinifera]

 Score =  319 bits (817), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 154/161 (95%), Positives = 160/161 (99%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVASRQSFLNT+KWI+EVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTAKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG 161
           GNKTDLV+KRQVSIEEGEAK+R+LNVMFIETSAKAGFNIK 
Sbjct: 121 GNKTDLVDKRQVSIEEGEAKARDLNVMFIETSAKAGFNIKA 161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
TAIR|locus:2042321	208	RAB6A [Arabidopsis thaliana (t	0.941	0.769	0.887	2.6e-70
TAIR|locus:2145392	207	RABH1e "RAB GTPase homolog H1E	0.976	0.801	0.804	7.4e-66
TAIR|locus:2060415	207	RABH1d "RAB GTPase homolog H1D	0.976	0.801	0.804	4.1e-65
UNIPROTKB|F1N8I9	175	RAB6A "Ras-related protein Rab	0.923	0.897	0.783	5.5e-61
TAIR|locus:2140045	214	RABH1c "RAB GTPase homolog H1C	0.941	0.747	0.795	5.5e-61
UNIPROTKB|Q1KME6	208	RAB6A "Ras-related protein Rab	0.905	0.740	0.785	7.1e-61
UNIPROTKB|F1MBF6	208	RAB6A "Uncharacterized protein	0.905	0.740	0.785	7.1e-61
UNIPROTKB|H7BYW1	174	RAB6A "Ras-related protein Rab	0.905	0.885	0.792	7.1e-61
UNIPROTKB|P20340	208	RAB6A "Ras-related protein Rab	0.905	0.740	0.792	7.1e-61
UNIPROTKB|F1SUT0	208	RAB6A "Uncharacterized protein	0.905	0.740	0.785	7.1e-61

TAIR|locus:2042321 RAB6A [Arabidopsis thaliana (taxid:3702)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 142/160 (88%), Positives = 146/160 (91%)

Query:     1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
             MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct:     1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query:    61 QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLV 120
             QLWDTAGQERFRSLIPSYIR             RQSFLNT+KWIDEVRTERGSDVI+VLV
Sbjct:    61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLV 120

Query:   121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             GNKTDLV+KRQVSIEE EAK+RELNVMFIETSAKAGFNIK
Sbjct:   121 GNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIK 160

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0032940 "secretion by cell" evidence=IGI

TAIR|locus:2145392 RABH1e "RAB GTPase homolog H1E" [Arabidopsis thaliana (taxid:3702)]

 Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
 Identities = 136/169 (80%), Positives = 145/169 (85%)

Query:     1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
             MA VS LAKYKLVFLGDQSVGKTSIITRFMYDKFD TYQATIGIDFLSKTMYLEDRTVRL
Sbjct:     1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60

Query:    61 QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLV 120
             QLWDTAGQERFRSLIPSYIR             RQSFLNTSKWI++VRTERGSDVIIVLV
Sbjct:    61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSKWIEDVRTERGSDVIIVLV 120

Query:   121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL 169
             GNKTDLV+KRQVSIEEG+ K+R+  V+FIETSAKAGFNIK   P  R++
Sbjct:   121 GNKTDLVDKRQVSIEEGDNKARDYGVIFIETSAKAGFNIK---PLFRKI 166

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

TAIR|locus:2060415 RABH1d "RAB GTPase homolog H1D" [Arabidopsis thaliana (taxid:3702)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 136/169 (80%), Positives = 141/169 (83%)

Query:     1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
             MA VS LAKYKLVFLGDQSVGKTSIITRFMYDKFD TYQATIGIDFLSKTMYLEDRTVRL
Sbjct:     1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60

Query:    61 QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLV 120
             QLWDTAGQERFRSLIPSYIR             R SFLNTSKWI+EVR ER  DVIIVLV
Sbjct:    61 QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRLSFLNTSKWIEEVRNERAGDVIIVLV 120

Query:   121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL 169
             GNKTDLVEKRQVSIEEG++K RE  VMFIETSAKAGFNIK   P  R++
Sbjct:   121 GNKTDLVEKRQVSIEEGDSKGREYGVMFIETSAKAGFNIK---PLFRKI 166

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

UNIPROTKB|F1N8I9 RAB6A "Ras-related protein Rab-6A" [Gallus gallus (taxid:9031)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 123/157 (78%), Positives = 134/157 (85%)

Query:     7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
             L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA
Sbjct:    11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 70

Query:    67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
             GQERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKTDL
Sbjct:    71 GQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 130

Query:   127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCS 163
              +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K  S
Sbjct:   131 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQVS 167

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

TAIR|locus:2140045 RABH1c "RAB GTPase homolog H1C" [Arabidopsis thaliana (taxid:3702)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 128/161 (79%), Positives = 134/161 (83%)

Query:     1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
             MA VS LAK+KLVFLGDQSVGKTSIITRFMYDKFD TYQ TIGIDFLSKTMYLEDRTVRL
Sbjct:     1 MASVSPLAKFKLVFLGDQSVGKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRL 60

Query:    61 QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERG-SDVIIVL 119
             QLWDTAGQERFRSLIPSYIR             RQ+FLNTSKWI++V  ERG S+VIIVL
Sbjct:    61 QLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVL 120

Query:   120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             VGNKTDLVEKRQVSI EGE K +E  VMFIETSAK  FNIK
Sbjct:   121 VGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIK 161

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0006984 "ER-nucleus signaling pathway" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

UNIPROTKB|Q1KME6 RAB6A "Ras-related protein Rab-6A" [Gallus gallus (taxid:9031)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 121/154 (78%), Positives = 133/154 (86%)

Query:     7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
             L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTA
Sbjct:    11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 70

Query:    67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
             GQERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKTDL
Sbjct:    71 GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 130

Query:   127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
              +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct:   131 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0000042 "protein targeting to Golgi" evidence=ISS

UNIPROTKB|F1MBF6 RAB6A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 121/154 (78%), Positives = 133/154 (86%)

Query:     7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
             L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTA
Sbjct:    11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 70

Query:    67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
             GQERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKTDL
Sbjct:    71 GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 130

Query:   127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
              +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct:   131 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|H7BYW1 RAB6A "Ras-related protein Rab-6A" [Homo sapiens (taxid:9606)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 122/154 (79%), Positives = 133/154 (86%)

Query:     7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
             L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA
Sbjct:     3 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 62

Query:    67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
             GQERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKTDL
Sbjct:    63 GQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 122

Query:   127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
              +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct:   123 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 156

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|P20340 RAB6A "Ras-related protein Rab-6A" [Homo sapiens (taxid:9606)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 122/154 (79%), Positives = 133/154 (86%)

Query:     7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
             L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA
Sbjct:    11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 70

Query:    67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
             GQERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKTDL
Sbjct:    71 GQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 130

Query:   127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
              +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct:   131 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000042 "protein targeting to Golgi" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005525 "GTP binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=IDA

GO:0018125 "peptidyl-cysteine methylation" evidence=IDA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0034067 "protein localization to Golgi apparatus" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0072385 "minus-end-directed organelle transport along microtubule" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=IDA;TAS

UNIPROTKB|F1SUT0 RAB6A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 121/154 (78%), Positives = 133/154 (86%)

Query:     7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
             L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTA
Sbjct:    11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 70

Query:    67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
             GQERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKTDL
Sbjct:    71 GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 130

Query:   127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
              +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct:   131 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1KME6	RAB6A_CHICK	No assigned EC number	0.8269	0.9176	0.75	yes	no
P34213	RAB6A_CAEEL	No assigned EC number	0.8269	0.9176	0.7609	yes	no
P35279	RAB6A_MOUSE	No assigned EC number	0.8397	0.9176	0.75	yes	no
Q9SID8	RAH1D_ARATH	No assigned EC number	0.8757	0.9764	0.8019	no	no
O80501	RAH1B_ARATH	No assigned EC number	0.9565	0.9470	0.7740	yes	no
Q55FK2	RAB6_DICDI	No assigned EC number	0.8101	0.9294	0.7596	yes	no
Q5RAV6	RAB6A_PONAB	No assigned EC number	0.8397	0.9176	0.75	yes	no
P17608	RYH1_SCHPO	No assigned EC number	0.7935	0.9117	0.7711	yes	no
Q9WVB1	RAB6A_RAT	No assigned EC number	0.8397	0.9176	0.75	yes	no
Q99260	YPT6_YEAST	No assigned EC number	0.6708	0.9176	0.7255	yes	no
P20340	RAB6A_HUMAN	No assigned EC number	0.8397	0.9176	0.75	yes	no
Q9LFT9	RAH1E_ARATH	No assigned EC number	0.8698	0.9764	0.8019	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	170
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	1e-108
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	3e-79
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	6e-78
pfam00071	162	pfam00071, Ras, Ras family	3e-74
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	9e-66
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	2e-64
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	1e-57
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	8e-55
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	8e-55
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	3e-54
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	1e-51
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	3e-49
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	1e-48
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	1e-46
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	2e-46
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	2e-44
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	1e-43
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	5e-42
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	6e-42
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	3e-41
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	8e-41
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	1e-40
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	2e-40
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	2e-39
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	2e-39
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	2e-39
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-39
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	3e-39
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	1e-38
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	2e-38
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	4e-38
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	7e-35
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	1e-34
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	1e-34
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	3e-34
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-33
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	2e-33
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	4e-32
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	9e-32
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	9e-32
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	1e-31
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	4e-31
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	1e-30
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	3e-30
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	3e-29
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	2e-28
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	3e-28
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	6e-28
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	8e-28
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	4e-27
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	6e-26
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	1e-25
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	1e-25
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	3e-25
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	7e-25
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	1e-24
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	2e-24
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	2e-24
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	2e-24
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	5e-24
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	2e-23
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	2e-23
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	8e-23
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	9e-23
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	9e-22
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-21
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	2e-21
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	5e-21
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	6e-21
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	7e-21
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	8e-21
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	3e-20
pfam08477	116	pfam08477, Miro, Miro-like protein	4e-20
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	3e-19
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	7e-19
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	9e-19
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	8e-17
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	8e-17
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	2e-16
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	3e-15
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	7e-14
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	8e-14
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	4e-13
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	5e-13
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	7e-12
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	1e-11
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	2e-11
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	2e-10
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	2e-08
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	6e-08
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	8e-08
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	2e-07
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	2e-07
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	4e-07
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	5e-07
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	2e-05
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	2e-05
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	1e-04
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	2e-04
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	3e-04
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	8e-04
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	0.001
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	0.001
cd04105	202	cd04105, SR_beta, Signal recognition particle rece	0.001
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	0.003
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	0.004
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	0.004

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  304 bits (781), Expect = e-108
 Identities = 127/151 (84%), Positives = 139/151 (92%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLVFLGDQSVGKTSIITRFMYD FDN YQATIGIDFLSKTMY++D+TVRLQLWDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRSLIPSYIRDSSVAVVVYD+ +RQSF NT KWID+VR ERG+DVIIVLVGNKTDL +K
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK 120

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           RQVS EEGE K++E N MFIETSAKAG N+K
Sbjct: 121 RQVSTEEGEKKAKENNAMFIETSAKAGHNVK 151

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  232 bits (593), Expect = 3e-79
 Identities = 75/161 (46%), Positives = 112/161 (69%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD  VGK+S+++RF   KF   Y++TIG+DF +KT+ ++ + V+LQ+WDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R +  A++VYD+ +R+SF N   W+ E+R     +V+I+LVGNK+DL E+
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEEQ 120

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           RQVS EE EA + E  + F ETSAK   N++     + R I
Sbjct: 121 RQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREI 161

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  228 bits (584), Expect = 6e-78
 Identities = 74/151 (49%), Positives = 112/151 (74%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGKTS++ RF+ +KF   Y++TIG+DF SKT+ ++ + V+LQ+WDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R +  A++VYDV +R+SF N  KW++E++     ++ I+LVGNK+DL ++
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           RQVS EE +  ++E  ++F ETSAK G N+ 
Sbjct: 121 RQVSTEEAQQFAKENGLLFFETSAKTGENVD 151

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  219 bits (560), Expect = 3e-74
 Identities = 77/150 (51%), Positives = 107/150 (71%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV +GD  VGK+S++ RF  +KF   Y  TIG+DF +KT+ ++ +TV+LQ+WDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           FR+L P Y R +   ++VYD+ SR SF N  KW++E+      +V IVLVGNK DL ++R
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            VS EEGEA ++EL + F+ETSAK   N++
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVE 150

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  197 bits (504), Expect = 9e-66
 Identities = 72/152 (47%), Positives = 106/152 (69%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV LGD SVGK+SI+ RF+ ++F    ++TIG  FL++T+ L+D TV+ ++WDTAGQ
Sbjct: 1   QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           ER+RSL P Y R ++ A+VVYD+ S +SF     W+ E++     +++I L GNK DL  
Sbjct: 61  ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADLES 120

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           KRQVS EE +  + E  ++F+ETSAK G N+ 
Sbjct: 121 KRQVSTEEAQEYADENGLLFMETSAKTGENVN 152

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  194 bits (495), Expect = 2e-64
 Identities = 94/131 (71%), Positives = 110/131 (83%)

Query: 30  MYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89
           MYD FDN YQ+TIGIDFLSKT+YL++  VRLQLWDTAGQERFRSLIPSYIRDS+ A+VVY
Sbjct: 1   MYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVY 60

Query: 90  DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFI 149
           D+ +RQSF NT+KWI ++  ERG DVII LVGNKTDL + R+V+ EEG  K++E N MF 
Sbjct: 61  DITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFH 120

Query: 150 ETSAKAGFNIK 160
           ETSAKAG NIK
Sbjct: 121 ETSAKAGHNIK 131

Length = 176

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  177 bits (451), Expect = 1e-57
 Identities = 61/150 (40%), Positives = 95/150 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R++ +KF+  +++T    F  KT+ +  + + L +WDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+ +L P Y RD+  A++VYD+    SF    KWI E++  RG+++ +V+VGNK DL  +
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           R VS  E E  ++ +     ETSAK G  I
Sbjct: 121 RVVSKSEAEEYAKSVGAKHFETSAKTGKGI 150

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  170 bits (432), Expect = 8e-55
 Identities = 59/150 (39%), Positives = 106/150 (70%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++T+ ++ +T++ Q+WDTAGQE
Sbjct: 4   FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +  A++VYD+  + +F N  +W+ E+R    S+++I+LVGNK+DL   
Sbjct: 64  RYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDLRHL 123

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           R V  EE +A + +  + FIETSA  G N+
Sbjct: 124 RAVPTEEAKAFAEKNGLSFIETSALDGTNV 153

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  170 bits (432), Expect = 8e-55
 Identities = 67/154 (43%), Positives = 100/154 (64%), Gaps = 2/154 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ +GD  VGK+S++ RF  D FD    +TIG+DF  KT+ ++ + V+L +WDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDLVE 128
           RFR+L  SY R +   ++VYDV  R +F N   W++E+ T     D + +LVGNK D  E
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDK-E 119

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGC 162
            R+V+ EEG+  +R+ N++FIETSAK    ++  
Sbjct: 120 NREVTREEGQKFARKHNMLFIETSAKTRIGVQQA 153

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  168 bits (429), Expect = 3e-54
 Identities = 71/161 (44%), Positives = 106/161 (65%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D F+ ++ +TIGIDF  +T+ L+ + ++LQ+WDTAGQE
Sbjct: 4   FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R +   ++VYD+   +SF N   W+  +      DV  +LVGNK D+ EK
Sbjct: 64  RFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDMEEK 123

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           R VS EEGEA +RE  + F+ETSAKA  N++    T+ + I
Sbjct: 124 RVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDI 164

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  162 bits (411), Expect = 1e-51
 Identities = 67/161 (41%), Positives = 104/161 (64%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +TV+LQ+WDTAGQE
Sbjct: 3   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQE 62

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R +   ++VYDV  ++SF N  +W+ E+      +V  +LVGNK DL +K
Sbjct: 63  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDK 122

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           + V   E +  + EL + F+ETSAK   N++    T+ R I
Sbjct: 123 KVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREI 163

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  156 bits (395), Expect = 3e-49
 Identities = 60/150 (40%), Positives = 100/150 (66%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G    GK+ ++ +F+ +KF      TIG++F S+ + +  ++V+LQ+WDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R ++ A++VYD+ SR+SF   + W+ + RT    D++I+LVGNK DL + 
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLEDD 120

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           R+V+  E    ++E  ++F+ETSA  G N+
Sbjct: 121 REVTFLEASRFAQENGLLFLETSALTGENV 150

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  154 bits (391), Expect = 1e-48
 Identities = 62/151 (41%), Positives = 97/151 (64%), Gaps = 1/151 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT ++ RF    F      TIG+DF  KT+ ++ + V+LQ+WDTAGQE
Sbjct: 4   FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R ++ A++ YD+  R SF +   WI+EV     S+V+++L+GNK DL E+
Sbjct: 64  RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123

Query: 130 RQVSIEEGEAKSRELNVMF-IETSAKAGFNI 159
           R+V  EE    +    ++  +ETSAK   N+
Sbjct: 124 REVLFEEACTLAEHYGILAVLETSAKESSNV 154

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  149 bits (378), Expect = 1e-46
 Identities = 60/153 (39%), Positives = 105/153 (68%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 5   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 64

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
            FRS+  SY R ++ A++VYD+  R++F + + W+++ R    S++ I+L+GNK DL  +
Sbjct: 65  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESR 124

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGC 162
           R+VS EEGEA +RE  ++F+ETSAK   N++  
Sbjct: 125 REVSYEEGEAFAREHGLIFMETSAKTASNVEEA 157

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  148 bits (377), Expect = 2e-46
 Identities = 61/150 (40%), Positives = 86/150 (57%), Gaps = 2/150 (1%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV LG   VGK+++  RF+  +F   Y  TI  D   K + ++  T  L + DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEK 129
           F ++   YIR+    ++VY + SR+SF       +++   +  + + IVLVGNK DL  +
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE 119

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           RQVS EEGEA + E    F+ETSAK   NI
Sbjct: 120 RQVSTEEGEALAEEWGCPFLETSAKTNINI 149

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  144 bits (365), Expect = 2e-44
 Identities = 69/156 (44%), Positives = 100/156 (64%), Gaps = 7/156 (4%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K + ++DR V LQ+WDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVR----TERGSDVIIVLVGNKTD 125
           RF+SL  ++ R +   V+VYDV + +SF +   W DE           +   V++GNK D
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 126 LVEKRQVSIEEGEA--KSRELNVMFIETSAKAGFNI 159
           L EKRQVS ++ +   KS+  N+ + ETSAK   N+
Sbjct: 121 LEEKRQVSTKKAQQWCKSKG-NIPYFETSAKEAINV 155

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  142 bits (360), Expect = 1e-43
 Identities = 65/151 (43%), Positives = 100/151 (66%), Gaps = 1/151 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +K++ +GD  VGKT ++ RF    F   ++ AT+GI F +K + ++   V+LQ+WDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           ERFRS+  +Y RD+   +++YDV ++ SF N   W+ E+     SDV+I+L+GNK D+  
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           +R V  E+GE  ++E  V F+ETSAK G N+
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNV 151

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  139 bits (351), Expect = 5e-42
 Identities = 62/157 (39%), Positives = 109/157 (69%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK++I++RF  ++F    ++TIG++F ++T+ +E +TV+ Q+WDTAGQE
Sbjct: 13  FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +  A++VYD+  RQ+F N  +W+ E+R    S+++I++ GNK+DL   
Sbjct: 73  RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHL 132

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166
           R V+ E+G+A + +  + F+ETSA    N++    TI
Sbjct: 133 RSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTI 169

Length = 216

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  139 bits (351), Expect = 6e-42
 Identities = 62/153 (40%), Positives = 104/153 (67%), Gaps = 2/153 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAG 67
           +++L+ +GD +VGK+S++ RF   +F      T+G+DF S+ + +E    ++LQLWDTAG
Sbjct: 2   QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAG 61

Query: 68  QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDL 126
           QERFRS+  SY R+S   ++V+D+ +R+SF +   W++E R+  +    + +LVG+K DL
Sbjct: 62  QERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL 121

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             +RQV+ EE E  +++L + +IETSA+ G N+
Sbjct: 122 ESQRQVTREEAEKLAKDLGMKYIETSARTGDNV 154

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  137 bits (346), Expect = 3e-41
 Identities = 60/157 (38%), Positives = 90/157 (57%), Gaps = 7/157 (4%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQ 68
           +K++ +GD  VGKTSII R+++  F   Y+ATIG+DF  K +  +  T VRLQLWD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKW---ID-EVRTERGSDVIIVLVGNKT 124
           ERF  +   Y + +  A++V+DV    +F    KW   +D +V    G  +  +L+ NK 
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 125 DLVEKR-QVSIEEGEAKSRELN-VMFIETSAKAGFNI 159
           DL ++R     E+ +   +E   + + ETSAK   NI
Sbjct: 121 DLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINI 157

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  134 bits (339), Expect = 8e-41
 Identities = 55/151 (36%), Positives = 96/151 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   KF      TIG++F ++ + +  + ++LQ+WDTAGQE
Sbjct: 3   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE 62

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R ++ A++VYD+  R ++ + S W+ + R     + +I L+GNK DL  +
Sbjct: 63  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ 122

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V+ EE +  + E  ++F+E SAK G N++
Sbjct: 123 RDVTYEEAKQFADENGLLFLECSAKTGENVE 153

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  135 bits (342), Expect = 1e-40
 Identities = 56/151 (37%), Positives = 103/151 (68%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++++ ++LQ+WDTAGQE
Sbjct: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
            FRS+  SY R ++ A++VYD+  R++F + + W+++ R    +++ I+L+GNK DL  +
Sbjct: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R VS EEGE  ++E  ++F+E SAK   N++
Sbjct: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVE 157

Length = 210

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  133 bits (336), Expect = 2e-40
 Identities = 59/151 (39%), Positives = 97/151 (64%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+ SVGKTS + R+  D F + + +T+GIDF  KT+Y  D+ ++LQ+WDTAGQE
Sbjct: 2   FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQE 61

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +   +++YD+ + +SF     W  +++T    +  ++LVGNK D+ ++
Sbjct: 62  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R VS E G   + +L   F E SAK   N+K
Sbjct: 122 RVVSAERGRQLADQLGFEFFEASAKENINVK 152

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  131 bits (331), Expect = 2e-39
 Identities = 61/151 (40%), Positives = 96/151 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ ++   ++LQ+WDTAGQE
Sbjct: 8   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R ++  ++ YD+   +SF    +W+ E+     + VI +LVGNK DL E+
Sbjct: 68  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAER 127

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R+VS +  E  S   ++ ++ETSAK   N++
Sbjct: 128 REVSQQRAEEFSDAQDMYYLETSAKESDNVE 158

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  132 bits (334), Expect = 2e-39
 Identities = 64/167 (38%), Positives = 94/167 (56%), Gaps = 16/167 (9%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++K+V LGD  VGKT+++ R + D+F   Y  TIG    +KT+    R ++LQLWDTAGQ
Sbjct: 5   EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQ 64

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFL-NTSKWIDEVRTERGSDVIIVLVGNKTDLV 127
           E +RSL P Y R ++  ++VYD   R+S    T +W++E+R     DV I+LVGNK DL 
Sbjct: 65  EEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLF 124

Query: 128 EKRQVSIEEGEAKSREL---------------NVMFIETSAKAGFNI 159
           +++  S E     +RE+               N   +ETSAK+    
Sbjct: 125 DEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGP 171

Length = 219

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  131 bits (332), Expect = 2e-39
 Identities = 61/161 (37%), Positives = 95/161 (59%), Gaps = 11/161 (6%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT----------VRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +    +           V L
Sbjct: 6   KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVHL 65

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVL 119
           QLWDTAGQERFRSL  ++ RD+   ++++D+ S QSFLN   W+ +++     +   IVL
Sbjct: 66  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIVL 125

Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           +GNK DL ++R+VS  +    + +  + + ETSA  G N++
Sbjct: 126 IGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVE 166

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  130 bits (330), Expect = 2e-39
 Identities = 59/151 (39%), Positives = 86/151 (56%), Gaps = 2/151 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YKLV LG   VGK+++  +F+   F + Y  TI  D   K + ++     L + DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 59

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVE 128
            F ++   Y+R     ++VY +  RQSF    K+ +++ R +   DV IVLVGNK DL  
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           +R VS EEG+  +R+    F+ETSAK   N+
Sbjct: 120 ERVVSTEEGKELARQWGCPFLETSAKERVNV 150

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  130 bits (329), Expect = 3e-39
 Identities = 59/151 (39%), Positives = 87/151 (57%), Gaps = 2/151 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YKLV LG   VGK+++  +F+   F + Y  TI  D   K + ++     L + DTAGQE
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 61

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVE 128
            F ++   Y+R     ++VY +  RQSF   +K+ +++ R +   DV IVLVGNK DL  
Sbjct: 62  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDLEN 121

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           +R VS EEG+  +R+    F+ETSAK   N+
Sbjct: 122 ERVVSTEEGKELARQWGCPFLETSAKERINV 152

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  128 bits (324), Expect = 1e-38
 Identities = 58/151 (38%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAGQ 68
           K++ +G+ +VGK+S+I RF+   F   Y+ TIG+DFL K ++L      VRL LWDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           E F ++  +Y R +   ++V+    R+SF     W ++V  E G D+ +VLV  K DL++
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLD 120

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           +  ++ EE EA ++ L +    TS K  FN+
Sbjct: 121 QAVITNEEAEALAKRLQLPLFRTSVKDDFNV 151

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  129 bits (327), Expect = 2e-38
 Identities = 63/162 (38%), Positives = 100/162 (61%), Gaps = 3/162 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+S++ RF  + F  +Y  TIG+DF  +T+ +    V+LQ+WDTAGQE
Sbjct: 7   FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE 66

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVII-VLVGNKTDLVE 128
           RFR++  +Y R +   +VVYDV + +SF+N  +W+ E+  E+  D +  VLVGNK D  E
Sbjct: 67  RFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEI--EQNCDDVCKVLVGNKNDDPE 124

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           ++ V  E+    + ++ +   ETSAK   N++     I  L+
Sbjct: 125 RKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELV 166

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  127 bits (322), Expect = 4e-38
 Identities = 58/148 (39%), Positives = 89/148 (60%), Gaps = 2/148 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT +  RF   +F    +ATIG+DF  +T+ ++   +++QLWDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 70  RFR-SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLV 127
           RFR S++  Y R+    V VYDV +  SF +   WI+E       ++V  +LVGNK DL 
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKA 155
           E+ QV  +  +  +   ++   ETSAK 
Sbjct: 123 EQIQVPTDLAQRFADAHSMPLFETSAKD 150

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  119 bits (300), Expect = 7e-35
 Identities = 62/154 (40%), Positives = 90/154 (58%), Gaps = 6/154 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGK+S++ R++ +KFD     TIG++FL+K + ++   V LQ+WDTAGQER
Sbjct: 7   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER 66

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDE----VRTERGSDVIIVLVGNKTDL 126
           FRSL   + R S   ++ + V   QSF N S W  E       +       V++GNK D 
Sbjct: 67  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID- 125

Query: 127 VEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNI 159
           + +RQVS EE +A  R+     + ETSAK   N+
Sbjct: 126 IPERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 159

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  119 bits (299), Expect = 1e-34
 Identities = 60/161 (37%), Positives = 100/161 (62%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           ++L+ +GD  VGKT ++ RF  ++F +++ +TIG+DF  KT+ ++   VR+Q+WDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R++++   Y R +    +VYD++S +S+ +  KW+ +V       V  +L+GNK D  +K
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           RQV  E+G   ++E  + F ETSA    NIK     +  L+
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLTELV 161

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  119 bits (301), Expect = 1e-34
 Identities = 57/154 (37%), Positives = 88/154 (57%), Gaps = 6/154 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           K+V LG +SVGKTS++ R+++ +F    YQ TIG  F++K M + +R V L +WDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+ ++   Y R +  A+V YD+    SF     W+ E++        I L G K+DL+E+
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQ 120

Query: 130 ----RQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
               RQV   + +  + E+     ETS+K G N+
Sbjct: 121 DRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNV 154

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  118 bits (297), Expect = 3e-34
 Identities = 55/164 (33%), Positives = 88/164 (53%), Gaps = 17/164 (10%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD +VGKT ++  +  +KF   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 71  FRSLIP-SYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           +  L P SY   + V ++ + V S  SF N  +KW  E++     +V I+LVG K DL +
Sbjct: 61  YDRLRPLSY-PQTDVFLLCFSVDSPSSFENVKTKWYPEIK-HYCPNVPIILVGTKIDLRD 118

Query: 129 -----------KRQVSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
                      ++ ++ EEGE  ++E+  V ++E SA     +K
Sbjct: 119 DGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLK 162

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  117 bits (295), Expect = 1e-33
 Identities = 62/155 (40%), Positives = 95/155 (61%), Gaps = 3/155 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD  VGK+S++  F+    ++    TIG+DF  K + +  + ++L +WDTAGQE
Sbjct: 15  FKILLIGDSGVGKSSLLVSFISSSVEDL-APTIGVDFKIKQLTVGGKRLKLTIWDTAGQE 73

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSK-WIDEVRT-ERGSDVIIVLVGNKTDLV 127
           RFR+L  SY R++   ++VYDV  R++F N S  W  EV       D + +LVGNK D  
Sbjct: 74  RFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE 133

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGC 162
            +R VS EEG A ++E   +F+E SAK   N++ C
Sbjct: 134 SERDVSREEGMALAKEHGCLFLECSAKTRENVEQC 168

Length = 211

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  117 bits (295), Expect = 2e-33
 Identities = 59/151 (39%), Positives = 86/151 (56%), Gaps = 4/151 (2%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQ 68
            K+V LGD + GKTS+I RF  + F  +Y+ TIG+DF S+ + L     V LQ+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKW---IDEVRTERGSDVIIVLVGNKTD 125
           +    ++  YI  +    +VYD+ + QSF N   W   + +V  E  +   +VLVGNKTD
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAG 156
           L   RQV+ E+    ++E ++  I  SAK G
Sbjct: 121 LEHNRQVTAEKHARFAQENDMESIFVSAKTG 151

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  112 bits (282), Expect = 4e-32
 Identities = 48/155 (30%), Positives = 84/155 (54%), Gaps = 5/155 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +G+  VGK+ II R+   +F + Y  TIGID+  K + + ++ VR+  +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS-----DVIIVLVGNKTD 125
           +  +   + +D+   ++VYDV  RQSF     W+ E++ E G      ++++V+  NK D
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           L + R VS +EG   +      + ETSA  G  + 
Sbjct: 122 LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVN 156

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  112 bits (282), Expect = 9e-32
 Identities = 56/150 (37%), Positives = 95/150 (63%), Gaps = 1/150 (0%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ +G + VGKTS++ RF  D F    ++T+G+DF  KT+ L  + +RLQ+WDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           F S+  +Y R +   ++VYD+  +++F +  KW+  +      D  ++LVGNK D    R
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121

Query: 131 QVSIEEGEAKSRELNVM-FIETSAKAGFNI 159
           +++ ++GE  ++++  M F E SAK  FN+
Sbjct: 122 EITRQQGEKFAQQITGMRFCEASAKDNFNV 151

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  112 bits (281), Expect = 9e-32
 Identities = 62/163 (38%), Positives = 93/163 (57%), Gaps = 4/163 (2%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV LGD  VGKT++  +   + F  TY  TI  D   K + ++ +   L++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIE-DSYRKQVVVDGQPCMLEVLDTAGQEE 59

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKW---IDEVRTERGSDVIIVLVGNKTDLV 127
           + +L   +IR+    ++VY + SR +F    ++   I  V+ E  +DV I++VGNK D V
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
            +R+VS EEG A +R L   FIE SAK   N++    T+ R +
Sbjct: 120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRAL 162

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  111 bits (280), Expect = 1e-31
 Identities = 56/149 (37%), Positives = 84/149 (56%), Gaps = 1/149 (0%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K + +GD  VGK  I+        ++ Y   +GID+ + T+ L+ R V+LQLWDT+GQ R
Sbjct: 8   KFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGR 67

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           F ++  SY R +   ++VYD+ +R SF    +WI E+  E    V  +LVGN+  L  KR
Sbjct: 68  FCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEI-DEHAPGVPKILVGNRLHLAFKR 126

Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           QV+ E+ +A +    + F E S    FNI
Sbjct: 127 QVATEQAQAYAERNGMTFFEVSPLCNFNI 155

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  109 bits (275), Expect = 4e-31
 Identities = 58/153 (37%), Positives = 89/153 (58%), Gaps = 3/153 (1%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD SVGKT +I RF  D FD  Y+ATIG+DF  +   +      LQLWDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLVEK 129
           F+ +  +Y R +   ++V+D+    S  +T +W+ D ++    S V++ LVG K DL   
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121

Query: 130 RQVSIEEGEA--KSRELNVMFIETSAKAGFNIK 160
            Q ++ E +A   +RE+   +   SA  G N++
Sbjct: 122 AQYALMEQDAIKLAREMKAEYWAVSALTGENVR 154

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score =  109 bits (273), Expect = 1e-30
 Identities = 57/155 (36%), Positives = 87/155 (56%), Gaps = 5/155 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYLED--RTVRLQLWDTA 66
           +   +GD +VGK++++  F  D   F   Y  T G D + KT+ + D   +V L ++D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 67  GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTD 125
           GQE F  ++ +     +V  VVYDV +  SF N S+WI+ VRT   G     VLVGNK D
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKCD 121

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           L ++R+V   + +A ++   + F ETSAK G   +
Sbjct: 122 LTDRREVDAAQAQALAQANTLKFYETSAKEGVGYE 156

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  108 bits (271), Expect = 3e-30
 Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 18/164 (10%)

Query: 12  LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71
           LV +GD +VGKT ++  +  + F   Y  T+  +  S  + ++ + V L LWDTAGQE +
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTV-FENYSADVEVDGKPVELGLWDTAGQEDY 59

Query: 72  RSLIP-SYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDL--- 126
             L P SY  D+ V ++ + V S  SF N   KW  EV+     +V I+LVG K DL   
Sbjct: 60  DRLRPLSY-PDTDVFLICFSVDSPASFENVKEKWYPEVK-HFCPNVPIILVGTKLDLRND 117

Query: 127 -------VEKRQ--VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
                   +K+Q  V+ E+G+A ++ +  V ++E SA     ++
Sbjct: 118 KSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVR 161

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  105 bits (263), Expect = 3e-29
 Identities = 56/153 (36%), Positives = 87/153 (56%), Gaps = 2/153 (1%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
             YKLV +G   VGK+++  +F+   F   Y  TI  D  +K   ++ +  RL + DTAG
Sbjct: 1   PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWARLDILDTAG 59

Query: 68  QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDL 126
           QE F ++   Y+R     ++V+ V  R SF    K+  ++ R +   +  ++LVGNK DL
Sbjct: 60  QEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADL 119

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             +RQVS EEG+  +R+L + +IETSAK   N+
Sbjct: 120 EHQRQVSREEGQELARQLKIPYIETSAKDRVNV 152

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  103 bits (258), Expect = 2e-28
 Identities = 56/152 (36%), Positives = 87/152 (57%), Gaps = 2/152 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YK+V LG   VGK+++  +F+   F   Y  TI  DF  K + ++     L++ DTAG 
Sbjct: 1   EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGT 59

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDE-VRTERGSDVIIVLVGNKTDLV 127
           E+F S+   YI++    +VVY + ++Q+F +     D+ VR +    V I+LVGNK DL 
Sbjct: 60  EQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
            +R+VS  EG A + E    F+ETSAK+   +
Sbjct: 120 SEREVSSAEGRALAEEWGCPFMETSAKSKTMV 151

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  102 bits (256), Expect = 3e-28
 Identities = 51/151 (33%), Positives = 91/151 (60%), Gaps = 2/151 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V+L + DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQLNILDTAGQE 59

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVE 128
            + ++  +Y R     ++V+ +   +SF   +++ +++ R +   +V ++LVGNK DL +
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLED 119

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           KRQVS+EE    + +  V ++ETSAK   N+
Sbjct: 120 KRQVSVEEAANLAEQWGVNYVETSAKTRANV 150

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  102 bits (256), Expect = 6e-28
 Identities = 56/153 (36%), Positives = 87/153 (56%), Gaps = 4/153 (2%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG +SVGK+S+  +F+   F  +Y  TI   F SK +  + +   L++ DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 71  FRSLIP-SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVE 128
           + S++P  Y       ++VY V SR+SF       D++    G + + IVLVGNK+DL  
Sbjct: 62  Y-SILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHM 120

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG 161
           +RQVS EEG+  +      F+E+SAK   N++ 
Sbjct: 121 ERQVSAEEGKKLAESWGAAFLESSAKENENVEE 153

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  102 bits (257), Expect = 8e-28
 Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 13/163 (7%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           M  +  + ++KL+ +GD  VGKT+ + R +  +F+  Y  T+G++      Y     +  
Sbjct: 1   MQQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICF 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWI-DEVRTERGSDVIIVL 119
            +WDTAGQE+F  L   Y      A++++DV SR ++ N   W  D VR     ++ IVL
Sbjct: 61  NVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV--CENIPIVL 118

Query: 120 VGNKTDLVEKRQVSIEEGEAKS----RELNVMFIETSAKAGFN 158
           VGNK D V+ RQV     +A+     R+ N+ + + SAK+ +N
Sbjct: 119 VGNKVD-VKDRQV-----KARQITFHRKKNLQYYDISAKSNYN 155

Length = 215

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 99.7 bits (249), Expect = 4e-27
 Identities = 48/153 (31%), Positives = 81/153 (52%), Gaps = 7/153 (4%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG   VGK+++  RF+  +F   Y+  +     S+ + ++   V L++ DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLE-SLYSRQVTIDGEQVSLEIQDTPGQQQ 59

Query: 71  F--RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKW---IDEVRTERGSDVIIVLVGNKTD 125
                 +   +R +   V+VY +  R SF   S+    I E++  R  ++ ++LVGNK D
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKK-RDGEIPVILVGNKAD 118

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158
           L+  RQVS EEG+  + EL  +F E SA   + 
Sbjct: 119 LLHSRQVSTEEGQKLALELGCLFFEVSAAENYL 151

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 97.4 bits (243), Expect = 6e-26
 Identities = 56/169 (33%), Positives = 80/169 (47%), Gaps = 23/169 (13%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED---RTVRLQLWDT 65
           K K+V +GD   GKT ++  +    F   Y  T+   F +    L+    + + L LWDT
Sbjct: 3   KVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV---FENYVTTLQVPNGKIIELALWDT 59

Query: 66  AGQERFRSLIP-SYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNK 123
           AGQE +  L P SY  D  V ++ Y V +  S  N   KW  EV         IVLVG K
Sbjct: 60  AGQEDYDRLRPLSY-PDVDVILICYSVDNPTSLDNVEDKWYPEV-NHFCPGTPIVLVGLK 117

Query: 124 TDLVEKRQ------------VSIEEGEAKSRELN-VMFIETSAKAGFNI 159
           TDL + +             V+ E+GE+ ++ +  V +IE SAK   N+
Sbjct: 118 TDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENV 166

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 96.1 bits (239), Expect = 1e-25
 Identities = 55/152 (36%), Positives = 91/152 (59%), Gaps = 3/152 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YKLV LG   VGK+++  +F+   F + Y  TI  D   K + ++ +   L++ DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVE 128
           +F ++   YI++     +VY + ++QSF +     +++ R +   DV ++LVGNK DL +
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 129 KRQVSIEEGEAKSREL-NVMFIETSAKAGFNI 159
           +R VS EEG+  +R+  N  F+ETSAK+  N+
Sbjct: 121 ERVVSKEEGQNLARQWGNCPFLETSAKSKINV 152

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 96.5 bits (240), Expect = 1e-25
 Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 2/166 (1%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  +YKLV +G   VGK+++  +F+ + F + Y  TI  D   K   +++ T  L + DT
Sbjct: 2   ASTEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIE-DSYRKQCVIDEETCLLDILDT 60

Query: 66  AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKT 124
           AGQE + ++   Y+R     + VY + SR SF   + + +++ R +    V ++LVGNK 
Sbjct: 61  AGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKC 120

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           DL  +RQVS  EG+  ++   + F+ETSAK   N+      + R I
Sbjct: 121 DLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREI 166

Length = 189

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 94.9 bits (236), Expect = 3e-25
 Identities = 51/152 (33%), Positives = 89/152 (58%), Gaps = 2/152 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTAG 
Sbjct: 1   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGT 59

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLV 127
           E+F ++   Y+++    V+VY + ++ +F +     +++ R +   DV ++LVGNK DL 
Sbjct: 60  EQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 119

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           ++R V  E+G+  +R+    F+ETSAKA  N+
Sbjct: 120 DERVVGKEQGQNLARQWGCAFLETSAKAKINV 151

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 93.7 bits (233), Expect = 7e-25
 Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 13/157 (8%)

Query: 13  VFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           V +G   VGK+S++   +  +     +    T   D       L+   V+L L DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDV--YVKELDKGKVKLVLVDTPGLD 58

Query: 70  RF-----RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
            F       L    +R + + ++V D   R+S  +    I   R  R   + I+LVGNK 
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLIL--RRLRKEGIPIILVGNKI 116

Query: 125 DLVEKRQVS-IEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL+E+R+V  +   E  ++ L V   E SAK G  + 
Sbjct: 117 DLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVD 153

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 93.3 bits (232), Expect = 1e-24
 Identities = 53/163 (32%), Positives = 90/163 (55%), Gaps = 3/163 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTAGQ
Sbjct: 1   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQ 59

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLV 127
           E + ++   Y+R     + V+ + SR+SF +   + +++ R +   DV +VLVGNK DL 
Sbjct: 60  EEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDL- 118

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
             R VS  +G+  ++   + +IETSAK    ++    T+ R I
Sbjct: 119 AARTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 94.4 bits (235), Expect = 2e-24
 Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 1/152 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++V LGD  VGK+S+   F    ++++     G D   +T+ ++     L ++D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS-DVIIVLVGNKTDLVE 128
               L  S ++     V+VY V  R SF   S+   ++R  R + D+ I+LVGNK+DLV 
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILVGNKSDLVR 120

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            R+VS++EG A +   +  FIETSA    N+ 
Sbjct: 121 SREVSVQEGRACAVVFDCKFIETSAALQHNVD 152

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 92.6 bits (230), Expect = 2e-24
 Identities = 45/149 (30%), Positives = 81/149 (54%), Gaps = 4/149 (2%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD +VGK+ ++ RF+ D ++    +T  +         E +T+ +  WDTAGQER
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           F+++  SY   +   ++V+DV  + ++ N SKW +E+R  R  ++  ++V NK DL +  
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDL-DPS 119

Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNI 159
               +   A+   L + +   SA  G N+
Sbjct: 120 VTQKKFNFAEKHNLPLYY--VSAADGTNV 146

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 93.0 bits (231), Expect = 2e-24
 Identities = 56/162 (34%), Positives = 84/162 (51%), Gaps = 2/162 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YK+V LG   VGK+++  +F+   F + +  TI  D       +++    L + DTAGQ 
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIE-DAYKTQARIDNEPALLDILDTAGQA 61

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVE 128
            F ++   Y+R     ++ Y V  R SF   S++ + + R     D+ +VLVGNK DL +
Sbjct: 62  EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLVLVGNKVDLEQ 121

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           +RQV+ EEG   +RE N  F ETSA   F I      + R I
Sbjct: 122 QRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREI 163

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 93.0 bits (231), Expect = 5e-24
 Identities = 56/183 (30%), Positives = 88/183 (48%), Gaps = 40/183 (21%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQE 69
           K+V LGD +VGKTS++ R+M  +F +T  +T+G  F     YL+      + +WDTAG+E
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFKDT-VSTVGGAF-----YLKQWGPYNISIWDTAGRE 55

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE- 128
           +F  L   Y R ++  ++ YDV++ QS          +      D +  +VGNK DL E 
Sbjct: 56  QFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEE 115

Query: 129 ------------------KRQVSIEEGEAKSRELN--------------VMFIETSAKAG 156
                             +RQV++E+ +A  + +N               M  ETSAK G
Sbjct: 116 GALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTG 175

Query: 157 FNI 159
           +N+
Sbjct: 176 YNV 178

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 90.5 bits (225), Expect = 2e-23
 Identities = 53/164 (32%), Positives = 81/164 (49%), Gaps = 16/164 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKTS+I  +  + +   Y  T   D  S  + ++ + VRLQL DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPT-AFDNFSVVVLVDGKPVRLQLCDTAGQDE 60

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVE- 128
           F  L P    D+ V ++ + V +  SF N + KWI E+R        I+LVG + DL   
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRK-HNPKAPIILVGTQADLRTD 119

Query: 129 -----------KRQVSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
                      ++ VS    +A + ++    +IE SA    N+K
Sbjct: 120 VNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLK 163

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 91.4 bits (227), Expect = 2e-23
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 13/154 (8%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD   GKT+ + R +  +F+  Y+ TIG++      +     +R   WDTAGQE
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVE 128
           +F  L   Y      A++++DV +R ++ N   W  ++   R  + I IVL GNK D V+
Sbjct: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC--RVCENIPIVLCGNKVD-VK 130

Query: 129 KRQVSIEEGEAKS----RELNVMFIETSAKAGFN 158
            RQV     +AK     R+ N+ + E SAK+ +N
Sbjct: 131 NRQV-----KAKQVTFHRKKNLQYYEISAKSNYN 159

Length = 219

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 88.5 bits (220), Expect = 8e-23
 Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 5/150 (3%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     +R  +WDTAGQE
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +F  L   Y      A++++DV SR ++ N   W  ++      ++ IVL GNK D+ ++
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 119

Query: 130 RQVSIEEGEAKS-RELNVMFIETSAKAGFN 158
           +   ++  +    R+ N+ + E SAK+ +N
Sbjct: 120 K---VKPKQITFHRKKNLQYYEISAKSNYN 146

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 88.3 bits (219), Expect = 9e-23
 Identities = 55/152 (36%), Positives = 87/152 (57%), Gaps = 3/152 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YK+V LG   VGK+++  +F+ + F  +Y  TI  D   K + ++ R   L++ DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIE-DSYRKQVEIDGRQCDLEILDTAGTE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVE 128
           +F ++   YI+     ++VY V S  S     +  ++V R +   +V +VLVGNK DL +
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120

Query: 129 KRQVSIEEGEAKSRELN-VMFIETSAKAGFNI 159
            RQVS E+G + S++   V F ETSA+   N+
Sbjct: 121 DRQVSREDGVSLSQQWGNVPFYETSARKRTNV 152

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 86.5 bits (214), Expect = 9e-22
 Identities = 58/157 (36%), Positives = 84/157 (53%), Gaps = 18/157 (11%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V LGD + GKTS++  F    F   Y+ T+  +++   ++++   V L LWDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYI-HDIFVDGLAVELSLWDTAGQEE 60

Query: 71  F---RSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL 126
           F   RSL  SY  D+ V ++ + V +  S  N  SKW+ E+R      V +VLV  K DL
Sbjct: 61  FDRLRSL--SY-ADTHVIMLCFSVDNPDSLENVESKWLAEIR-HHCPGVKLVLVALKCDL 116

Query: 127 VEKRQV--------SIEEGEAKSRELN-VMFIETSAK 154
            E R          S EEG A ++ +N   ++E SAK
Sbjct: 117 REPRNERDRGTHTISYEEGLAVAKRINACRYLECSAK 153

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 86.2 bits (213), Expect = 2e-21
 Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 13/151 (8%)

Query: 15  LGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 74
           +GD   GKT+ + R +  +F+  Y AT+G++      +     +R  +WDTAGQE+F  L
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 75  IPSYIRDSSVAVVVYDVASRQSFLNTSKW-IDEVRTERGSDVIIVLVGNKTDLVEKRQVS 133
              Y      A++++DV +R ++ N   W  D VR     ++ IVL GNK D V+ R+V 
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-VKDRKV- 116

Query: 134 IEEGEAKS----RELNVMFIETSAKAGFNIK 160
               +AKS    R+ N+ + + SAK+ +N +
Sbjct: 117 ----KAKSITFHRKKNLQYYDISAKSNYNFE 143

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 84.7 bits (210), Expect = 2e-21
 Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 4/153 (2%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
            K+V +GD +VGK++++ R + +K   T Y+     ++++  +  + +T +  L DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQ-SFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL 126
           E + ++   Y R    ++ V+D+            K   E+     S V I+LVGNK DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
            +  ++        ++      I  SA+ G NI
Sbjct: 122 RD-AKLKTHVAFLFAKLNGEPIIPLSAETGKNI 153

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 84.1 bits (208), Expect = 5e-21
 Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 4/154 (2%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++V  G   VGK+S++ RF+   F  +Y  TI  D   + +        LQ+ DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCSKSICTLQITDTTGSH 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD---VIIVLVGNKTDL 126
           +F ++    I      ++VY + S+QS        + +   +G++   + I+LVGNK D 
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDE 120

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
              R+VS  EG A +R  N  F+ETSAK   N++
Sbjct: 121 SPSREVSSSEGAALARTWNCAFMETSAKTNHNVQ 154

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 84.0 bits (208), Expect = 6e-21
 Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 16/158 (10%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV +GD + GKT ++  F  D+F   Y  T+  +++   + ++ + V L LWDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P    D+ V ++ + + S  S  N   KW  EV+     +V I+LVGNK DL   
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 120

Query: 127 ---------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
                    +++  V  EEG A + ++    ++E SAK
Sbjct: 121 EHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAK 158

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 84.5 bits (209), Expect = 7e-21
 Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 3/151 (1%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +LVF+G   VGKT++I RF+YD F+  ++ T+  +  SK   +    V + + DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEK 129
           F ++    I++     +VY V   +SF    +  +E+   +    V IV+VGNK D + +
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119

Query: 130 RQVSIEEGEAKSR-ELNVMFIETSAKAGFNI 159
           RQV   +  +    + N  F+E SAK   N+
Sbjct: 120 RQVEAADALSTVELDWNNGFVEASAKDNENV 150

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 83.2 bits (206), Expect = 8e-21
 Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 6/153 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQE 69
           KL+ +G   VGKTS+  + + +KFD    +T GI+     +   +R  +RL +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSK--WIDEVRTERGSDVIIVLVGNKTDLV 127
            + +    ++   S+ ++V+D   R     +    W+ +++   G    ++LVG   D  
Sbjct: 63  IYHATHQFFLTSRSLYLLVFD--LRTGDEVSRVPYWLRQIKA-FGGVSPVILVGTHIDES 119

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
               +  +    K   +       S K G  I 
Sbjct: 120 CDEDILKKALNKKFPAIINDIHFVSCKNGKGIA 152

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 82.4 bits (204), Expect = 3e-20
 Identities = 37/154 (24%), Positives = 78/154 (50%), Gaps = 6/154 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LGD  +GKTS++ +++  +FD  Y  T+G++F+ KT+ +    +   +WD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL---- 126
           F +++P   +D+   + ++D+  + +  +  +W  + R    +  I +LVG K DL    
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKT-AIPILVGTKYDLFADL 120

Query: 127 -VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             E+++   ++    ++ +    I  S     N+
Sbjct: 121 PPEEQEEITKQARKYAKAMKAPLIFCSTSHSINV 154

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 80.1 bits (198), Expect = 4e-20
 Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 4/117 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD+  GK+S++++ +  +F        G      T+ ++  T  L +WD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSF---LNTSKWIDEVRTERGSDVIIVLVGNKT 124
            +     +++ +   ++VYD+  R+S         W+  +R + G  + ++LVGNK 
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLR-KLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 79.5 bits (196), Expect = 3e-19
 Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 16/164 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTD---- 125
           +  L P     + V ++ + + S  SF N   KW  EVR     +  I+LVG K D    
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 120

Query: 126 ------LVEKRQ--VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
                 L EK+   ++  +G A ++E+  V ++E SA     +K
Sbjct: 121 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 164

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 78.7 bits (194), Expect = 7e-19
 Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 14/163 (8%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKTS++  F   +F   Y  T+  ++++    ++ + V+L LWDTAGQ
Sbjct: 1   RRKLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTD-CRVDGKPVQLALWDTAGQ 59

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLV 127
           E +  L P     + V ++ + + +  S  N  +KWI+EVR     +V ++LVG K DL 
Sbjct: 60  EEYERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLR 118

Query: 128 EK----------RQVSIEEGEAKSRELNVM-FIETSAKAGFNI 159
           ++            V I++ +  +R +    ++E SA  G  +
Sbjct: 119 QEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGV 161

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 78.3 bits (193), Expect = 9e-19
 Identities = 54/172 (31%), Positives = 87/172 (50%), Gaps = 14/172 (8%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++  TV L LWDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGNTVNLGLWDTAGQED 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P   R + V ++ + + S+ S+ N   KWI E+R      V IVLVG K DL + 
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELR-HYAPGVPIVLVGTKLDLRDD 120

Query: 130 RQ----------VSIEEGEAKSRELNV-MFIETSAKAGFNIKGCSPTIRRLI 170
           +Q          ++  +GE   +++    +IE S+K   N+K       +++
Sbjct: 121 KQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV 172

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 73.5 bits (180), Expect = 8e-17
 Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 22/160 (13%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE- 69
           K V +GD +VGKT ++  +  + F   Y  T+  D  S    ++ RTV L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV-FDNYSAQTAVDGRTVSLNLWDTAGQEE 63

Query: 70  --RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTD- 125
             R R+L  SY + ++V ++ + +AS  S+ N   KW  EV      +V I+LVG K D 
Sbjct: 64  YDRLRTL--SYPQ-TNVFIICFSIASPSSYENVRHKWHPEV-CHHCPNVPILLVGTKKDL 119

Query: 126 ---------LVEKRQVSI--EEGEAKSRELN-VMFIETSA 153
                    L E+ Q  I  ++G A +++++ V ++E SA
Sbjct: 120 RNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 73.2 bits (180), Expect = 8e-17
 Identities = 45/158 (28%), Positives = 81/158 (51%), Gaps = 16/158 (10%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD   GKT+++  F  D F   Y  T+  +  + +  ++ + + L LWDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-FENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTD---- 125
           + ++ P    DS   ++ +D++  ++  +   KW  EVR E   +  ++LVG K+D    
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVR-EFCPNTPVLLVGCKSDLRTD 120

Query: 126 ------LVEKRQ--VSIEEGEAKSRELN-VMFIETSAK 154
                 L  KRQ  VS E+G   ++++    ++E SAK
Sbjct: 121 LSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAK 158

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 73.6 bits (181), Expect = 2e-16
 Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 11/160 (6%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++V LG   VGKT+I++RF+  +F+  Y  TI  DF  K   +     +L + DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSF---------LNTSKWIDEVRTERGSDVIIVLV 120
            F ++    I    V ++V+ + +R+SF         +  +K   + +T+    + +V+ 
Sbjct: 60  PFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVIC 119

Query: 121 GNKTDLVEKRQVSIEEGEA-KSRELNVMFIETSAKAGFNI 159
           GNK D    R+V  +E E     + N  + E SAK   N+
Sbjct: 120 GNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 69.1 bits (169), Expect = 3e-15
 Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 16/157 (10%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P     + V +V + V S  SF N   KW+ E+ T        +LVG + DL   
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 120

Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E GE  +R+L  V ++E SA
Sbjct: 121 PSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSA 157

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 64.9 bits (159), Expect = 7e-14
 Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 9/150 (6%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG    GKT+I+ +    +   T   TIG  F  +T  +E + V+  +WD  GQ++
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTT-IPTIG--FNVET--VEYKNVKFTVWDVGGQDK 55

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEK 129
            R L   Y  ++   + V D + R+        + ++   E      ++++ NK DL   
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGA 115

Query: 130 RQVS-IEE--GEAKSRELNVMFIETSAKAG 156
              S + E  G    +         SA  G
Sbjct: 116 LTESELIELLGLESIKGRRWHIQPCSAVTG 145

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 65.3 bits (160), Expect = 8e-14
 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 6/121 (4%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG  + GKT+I+ +    +   T   TIG  F  +T  +  + V+  +WD  GQ
Sbjct: 14  EMRILILGLDNAGKTTILYKLKLGEIVTT-IPTIG--FNVET--VTYKNVKFTVWDVGGQ 68

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLV 127
           E  R L  +Y  ++   + V D A R       + +  +   E  +D  ++++ NK DL 
Sbjct: 69  ESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLP 128

Query: 128 E 128
            
Sbjct: 129 G 129

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 64.7 bits (157), Expect = 4e-13
 Identities = 44/166 (26%), Positives = 82/166 (49%), Gaps = 16/166 (9%)

Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
            P   + + KLV +GD   GKT+++     D +  TY  T+  ++ +  +  E++ V L 
Sbjct: 6   NPQPLVVRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 64

Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLV 120
           LWDT+G   + ++ P    DS   ++ +D++  + F +   KW  E+  +      I+L+
Sbjct: 65  LWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEI-LDYCPSTRILLI 123

Query: 121 GNKTDL------------VEKRQVSIEEGEAKSRELNV-MFIETSA 153
           G KTDL             ++  +S E+G A +++L    ++E SA
Sbjct: 124 GCKTDLRTDLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSA 169

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 63.1 bits (153), Expect = 5e-13
 Identities = 42/157 (26%), Positives = 82/157 (52%), Gaps = 16/157 (10%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  D F   Y  T+  D  + ++ +  +   L L+DTAGQE 
Sbjct: 2   KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQED 60

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P     + V ++ + V +  SF N   +W+ E++ E   +V  +L+G + DL   
Sbjct: 61  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK-EYAPNVPYLLIGTQIDLRDD 119

Query: 127 ---------VEKRQVSIEEGEAKSRELNVM-FIETSA 153
                    ++++ +++E+G+  ++E+    ++E SA
Sbjct: 120 PKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSA 156

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 60.7 bits (147), Expect = 7e-12
 Identities = 43/137 (31%), Positives = 59/137 (43%), Gaps = 21/137 (15%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD----- 64
            ++  LG   VGKT+I+ +F+  +F   Y  T         + L  R   L + D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 65  ----TAGQE----RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTS---KWIDEVRTERGS 113
               TAGQE    RFR L     R+S   ++VYD+ S  SF       + I E R     
Sbjct: 61  RYPGTAGQEWMDPRFRGL-----RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNK 115

Query: 114 DVIIVLVGNKTDLVEKR 130
           +  IV+VGNK D    R
Sbjct: 116 EPPIVVVGNKRDQQRHR 132

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 59.3 bits (143), Expect = 1e-11
 Identities = 43/164 (26%), Positives = 83/164 (50%), Gaps = 16/164 (9%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L LWDT+G 
Sbjct: 5   KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 63

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL- 126
             + ++ P    DS   ++ +D++  ++  +   KW  E++ E   +  ++LVG K+DL 
Sbjct: 64  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSDLR 122

Query: 127 ------VE-----KRQVSIEEGEAKSRELNVM-FIETSAKAGFN 158
                 VE     +  VS ++G   ++++    +IE SA    N
Sbjct: 123 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 166

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 58.9 bits (143), Expect = 2e-11
 Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 20/160 (12%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKF-DNTY----QATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++V +GD+ VGK+S+I   + ++F +N      + TI  D        E     +   DT
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTP-----ERVPTTIV--DT 56

Query: 66  AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           + + + R+ + + IR ++V  +VY V    +     +KW+  +R      V I+LVGNK+
Sbjct: 57  SSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKS 115

Query: 125 DLVEKRQVSIEEGE-----AKSRELNVMFIETSAKAGFNI 159
           DL +    +  E E      + RE+    +E SAK   N+
Sbjct: 116 DLRDGSSQAGLEEEMLPIMNEFREIET-CVECSAKTLINV 154

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 57.0 bits (137), Expect = 2e-10
 Identities = 45/163 (27%), Positives = 82/163 (50%), Gaps = 18/163 (11%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD   GKT+++  F  D +  +Y  T+  ++ + +  ++   + L +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENY-TASFEIDKHRIELNMWDTSGSSY 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNK----T 124
           + ++ P    DS   ++ +D+ SR   L+    KW  E + E   +  +VLVG K    T
Sbjct: 62  YDNVRPLAYPDSDAVLICFDI-SRPETLDSVLKKWQGETQ-EFCPNAKLVLVGCKLDMRT 119

Query: 125 DLVEKRQ--------VSIEEGEAKSRELN-VMFIETSAKAGFN 158
           DL   R+        V+ E+G   +R+L  V ++E S++   N
Sbjct: 120 DLSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSEN 162

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 51.0 bits (122), Expect = 2e-08
 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 28/166 (16%)

Query: 12  LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQ 68
           +V LG  S GKT+++ R  +++F NT   T G  F ++ + +     + V    WD  GQ
Sbjct: 6   IVMLGLDSAGKTTVLYRLKFNEFVNTV-PTKG--FNTEKIKVSLGNAKGVTFHFWDVGGQ 62

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE-----RGSD---VIIVLV 120
           E+ R L  SY R +   V V D           + ++E +TE     + S+   V ++++
Sbjct: 63  EKLRPLWKSYTRCTDGIVFVVDSVD-------VERMEEAKTELHKITKFSENQGVPVLVL 115

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166
            NK DL     + + E E K   L+    E S+   ++++     I
Sbjct: 116 ANKQDL--PNALPVSEVE-KLLALH----ELSSSTPWHVQPACAII 154

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 50.0 bits (119), Expect = 6e-08
 Identities = 53/190 (27%), Positives = 74/190 (38%), Gaps = 46/190 (24%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATI-------GID-FLSKTMYLE------- 54
            K V +GD +VGKT +I     +K    YQ           ID +      LE       
Sbjct: 3   IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD 62

Query: 55  DRTVRLQLWDTAG----QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSK-WIDEVRT 109
             +V L+LWDT G      RF     +Y R S V ++ + +AS  S  N    W  E+R 
Sbjct: 63  GVSVSLRLWDTFGDHDKDRRF-----AYGR-SDVVLLCFSIASPNSLRNVKTMWYPEIR- 115

Query: 110 ERGSDVIIVLVGNKTDL-------------------VEKRQVSIEEGEAKSRELNVMFIE 150
                V ++LVG K DL                        +  E G A ++EL + + E
Sbjct: 116 HFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYE 175

Query: 151 TSAKAGFNIK 160
           TS    F +K
Sbjct: 176 TSVVTQFGVK 185

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 49.0 bits (117), Expect = 8e-08
 Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 5/117 (4%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  S GK++++ +  + +   T   T+G  F  + + LE + + L +WD  GQE+
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELVTTI-PTVG--FNVEMLQLE-KHLSLTVWDVGGQEK 56

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDL 126
            R++   Y+ ++   V V D +       + K +  + + E    V +VL+ NK DL
Sbjct: 57  MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDL 113

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 48/159 (30%), Positives = 66/159 (41%), Gaps = 28/159 (17%)

Query: 15  LGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 74
           +G Q+ GKT+++      +F      T+G +    T       V +++WD  GQ RFRS+
Sbjct: 5   VGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTK----GNVTIKVWDLGGQPRFRSM 60

Query: 75  IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVII--------VLV-GNKTD 125
              Y R  +  V V D A R+          EV      D++         +LV GNK D
Sbjct: 61  WERYCRGVNAIVYVVDAADREKL--------EVAKNELHDLLEKPSLEGIPLLVLGNKND 112

Query: 126 LVEKRQVS--IEEGEAKS---RELNVMFIETSAKAGFNI 159
           L     V   IE+   KS   RE  V     SAK   NI
Sbjct: 113 LPGALSVDELIEQMNLKSITDRE--VSCYSISAKEKTNI 149

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 8  AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           +YK++ +G  + GKT+I+ +F+  +  +T   TIG    S    +  + +R  +WD  G
Sbjct: 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHT-SPTIG----SNVEEIVYKNIRFLMWDIGG 68

Query: 68 QERFRSLIPSYIRDSSVAVVVYDVASRQSF 97
          QE  RS   +Y  ++   ++V D   R+  
Sbjct: 69 QESLRSSWNTYYTNTDAVILVIDSTDRERL 98

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 46.9 bits (111), Expect = 4e-07
 Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 8/127 (6%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           ++V LG    GKT+I+ +   D+F    Q    I F  +T  +E + ++  +WD  G+ +
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEF---MQPIPTIGFNVET--VEYKNLKFTIWDVGGKHK 55

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEK 129
            R L   Y  ++   V V D + R         + ++ TE+   D ++++  NK D+   
Sbjct: 56  LRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDV--A 113

Query: 130 RQVSIEE 136
             +S+EE
Sbjct: 114 GALSVEE 120

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 8/127 (6%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+VFLG  + GKT+++     D+    +  T+       +  L    V+   +D  G E+
Sbjct: 21  KIVFLGLDNAGKTTLLHMLKDDRLA-QHVPTLH----PTSEELTIGNVKFTTFDLGGHEQ 75

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEK 129
            R +   Y  +    V + D A  + F  + + +D +   E  ++V I+++GNK D    
Sbjct: 76  ARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVPILILGNKIDK--P 133

Query: 130 RQVSIEE 136
             VS EE
Sbjct: 134 GAVSEEE 140

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 20/124 (16%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  + GKT+I+ +    +   T   T+G +  + T     + V+  +WD  GQ++
Sbjct: 11  RILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY----KNVKFNVWDVGGQDK 65

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE--------RGSDVIIVLVGN 122
            R L   Y   +   + V D A R         IDE R E           D ++++  N
Sbjct: 66  IRPLWRHYYTGTQGLIFVVDSADRDR-------IDEARQELHRIINDREMRDALLLVFAN 118

Query: 123 KTDL 126
           K DL
Sbjct: 119 KQDL 122

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 6/111 (5%)

Query: 58  VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVI 116
            RL  WD  GQE  RSL   Y  +S   + V D   R+ F  +    ++V   E    V 
Sbjct: 51  ARLMFWDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVP 110

Query: 117 IVLVGNKTDL-----VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGC 162
           ++++ NK DL     V + +   ++  A     + +    SA  G  ++  
Sbjct: 111 LLVLANKQDLPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEG 161

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 20/126 (15%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ +G  + GKT+I+ +    +   T   TIG +  +    +  + +   +WD  GQ++
Sbjct: 15  RILMVGLDAAGKTTILYKLKLGESVTTI-PTIGFNVET----VTYKNISFTVWDVGGQDK 69

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE--------RGSDVIIVLVGN 122
            R L   Y  ++   + V D   R         IDE R E           D +I++  N
Sbjct: 70  IRPLWRHYYTNTQGLIFVVDSNDRDR-------IDEAREELHRMLNEDELRDAVILVFAN 122

Query: 123 KTDLVE 128
           K DL +
Sbjct: 123 KQDLPD 128

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 30/171 (17%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVR------LQLWD 64
           K++ +G +  GK+S+ +      F N Y        L  T+ +E   VR      L LWD
Sbjct: 1   KVLLMGLRGSGKSSMRSII----FSN-YSPR-DTLRLGATIDVEQSHVRFLGNLTLNLWD 54

Query: 65  TAGQERFRSLIPSYIRD---SSVAVVVY--DVASRQ---SFLNTSKWIDEVRTERGSDVI 116
             GQ+ F     +  ++   S+V V++Y  DV SR+         K I+ +     +  +
Sbjct: 55  CPGQDDFMENYLTRQKEHIFSNVGVLIYVFDVESREYEEDLATLVKIIEALYQYSPNAKV 114

Query: 117 IVLVGNKTDLV--EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT 165
            VL+ +K DL+  ++R+   E+   +  E+    IE     G        T
Sbjct: 115 FVLI-HKMDLLSEDERKEIFED---RKEEI----IEEIEDFGIEDLTFFLT 157

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 18/158 (11%)

Query: 11  KLVFLGDQSVGKTSIITRFMY------------DKFDNTYQATIGIDFLSKTMYLEDRTV 58
           K+V +G    GKT+ +                          T+ +DF S  +   + T 
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD--EDTG 69

Query: 59  RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV 118
            + L+ T GQERF+ +     R +  A+V+ D +SR    +  + ID + +     V++ 
Sbjct: 70  -VHLFGTPGQERFKFMWEILSRGAVGAIVLVD-SSRPITFHAEEIIDFLTSRNPIPVVVA 127

Query: 119 LVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG 156
           +  NK DL +           K   L+V  IE  A  G
Sbjct: 128 I--NKQDLFDALPPEKIREALKLELLSVPVIEIDATEG 163

Length = 187

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 38.0 bits (88), Expect = 8e-04
 Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 14/123 (11%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIG-------IDFLSKTMYLEDRTVRLQLW 63
           K++ LGD  VGK+S++     ++       T+G         +   T   E++T  ++LW
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTP--EEKTFYVELW 59

Query: 64  DTAGQ----ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVL 119
           D  G     E  +S    +    +  + V+D+ +++S  N  +W  E    R +    +L
Sbjct: 60  DVGGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEA-LNRDTFPAGLL 118

Query: 120 VGN 122
           V N
Sbjct: 119 VTN 121

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 31/147 (21%)

Query: 11  KLVFLGDQSVGKTS----IITRFMYDKFDNTYQATIGIDFL---------SKTMYLEDRT 57
           +++ +GD  VGK+S    I+      +   T   T+G+  +         +      +R 
Sbjct: 23  RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERD 82

Query: 58  VRLQLWDTAGQERF---RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER--- 111
             ++LWD +G ER+   RSL  S I      + V+D++ R++  +  KW  EV       
Sbjct: 83  FFVELWDVSGHERYKDCRSLFYSQING---VIFVHDLSQRRTKTSLQKWASEVAATGTFS 139

Query: 112 ---------GSDVIIVLVGNKTDLVEK 129
                    G  V  +++GNK D+  K
Sbjct: 140 APLGSGGPGGLPVPYIVIGNKADIAPK 166

Length = 334

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 41/175 (23%)

Query: 11  KLVFLGDQSVGKTSIITRFM-------YDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
           K+  +G  +VGK+S+I   +        D       A    D +      + R   L   
Sbjct: 180 KIAIIGRPNVGKSSLINAILGEERVIVSD------IAGTTRDSIDIEFERDGRKYVL--I 231

Query: 64  DTAG----------QERFRSL--IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER 111
           DTAG           E++     + + I  + V ++V D    +        I  +  E 
Sbjct: 232 DTAGIRRKGKITESVEKYSVARTLKA-IERADVVLLVIDA--TEGISEQDLRIAGLIEEA 288

Query: 112 GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-------NVMFIETSAKAGFNI 159
           G  ++IV+  NK DLVE+ + ++EE + K R          ++FI  SA  G  +
Sbjct: 289 GRGIVIVV--NKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI--SALTGQGL 339

Length = 444

>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP)

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 25/128 (19%)

Query: 13  VFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERF 71
           + LG    GKT++ T+    K  +T  +   I+    + Y    +  +L L D  G E+ 
Sbjct: 4   LLLGPSDSGKTALFTKLTTGKVRSTVTS---IEPNVASFYSNSSKGKKLTLVDVPGHEKL 60

Query: 72  RSLIPSYIRDSSVAVV-VYDVASRQS------------FLNTSKWIDEVRTERGSDVIIV 118
           R  +  Y++ S  A+V V D A+ Q               +  K  +++         I+
Sbjct: 61  RDKLLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEKIKNKIP--------IL 112

Query: 119 LVGNKTDL 126
           +  NK DL
Sbjct: 113 IACNKQDL 120

Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 6/119 (5%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  + GKT+I+ + +  +  +    T G +  +    ++    +L +WD  GQ +
Sbjct: 17  RILLLGLDNAGKTTILKQ-LASEDISHITPTQGFNIKN----VQADGFKLNVWDIGGQRK 71

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV-GNKTDLVE 128
            R    +Y  ++ V + V D A R+ F    + + E+  E     + VLV  NK DL+ 
Sbjct: 72  IRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDLLT 130

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 10/119 (8%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  + GKT+I+ +F   +  +T   T+G  F  KT  LE    +L +WD  GQ+ 
Sbjct: 16  RILMLGLDNAGKTTILKKFN-GEDISTISPTLG--FNIKT--LEYNGYKLNIWDVGGQKS 70

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDL 126
            RS   +Y   +   + V D + R    +  + + ++  E    G+ ++I    NK DL
Sbjct: 71  LRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLIFA--NKQDL 127

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score = 35.7 bits (83), Expect = 0.004
 Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 7/135 (5%)

Query: 15  LGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS 73
           LG +  GK++++  F+   F  N Y  TI   +   T+ +  +   L L +    E    
Sbjct: 10  LGAKGSGKSALLQAFLGRSFSQNAYSPTIKPRYAVNTVEVPGQEKYLILREVGEDEEAIL 69

Query: 74  LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRT--ERGSDVIIVLVGNKTDLVEKRQ 131
           L  + +    VA +VYD +   SF     +  EV        ++  + V  K DL E++Q
Sbjct: 70  LNDAELAACDVACLVYDSSDPNSF----SYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQ 125

Query: 132 VSIEEGEAKSRELNV 146
            +  + +   R+L +
Sbjct: 126 RAEVQPDEFCRKLGL 140

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	170
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	100.0
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	100.0
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	100.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	100.0
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	100.0
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	100.0
KOG0395	196	consensus Ras-related GTPase [General function pre	100.0
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	100.0
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	100.0
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	100.0
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	100.0
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	100.0
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	100.0
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	100.0
PLN00223	181	ADP-ribosylation factor; Provisional	100.0
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	100.0
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	100.0
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	100.0
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	100.0
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	100.0
PTZ00133	182	ADP-ribosylation factor; Provisional	100.0
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	100.0
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	100.0
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	100.0
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	100.0
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	100.0
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	100.0
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.98
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.98
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.98
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.97
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.97
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.97
PTZ00099	176	rab6; Provisional	99.97
PLN00023	334	GTP-binding protein; Provisional	99.97
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.97
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.97
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.97
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.97
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.97
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.97
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.97
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.96
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.96
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.96
PRK12299	335	obgE GTPase CgtA; Reviewed	99.96
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.96
PRK04213	201	GTP-binding protein; Provisional	99.96
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.96
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.96
COG1100	219	GTPase SAR1 and related small G proteins [General	99.96
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.96
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.95
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.95
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.95
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.95
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.95
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.95
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.94
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.94
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.94
KOG1673	205	consensus Ras GTPases [General function prediction	99.94
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.94
PRK15494	339	era GTPase Era; Provisional	99.94
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.94
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.94
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.94
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.94
cd00881	189	GTP_translation_factor GTP translation factor fami	99.94
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.93
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.93
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.93
PRK03003	472	GTP-binding protein Der; Reviewed	99.93
PRK03003	472	GTP-binding protein Der; Reviewed	99.93
PRK11058	426	GTPase HflX; Provisional	99.93
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.93
PRK12297	424	obgE GTPase CgtA; Reviewed	99.93
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.93
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.93
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.93
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.93
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.92
PRK12296	500	obgE GTPase CgtA; Reviewed	99.92
PRK12298	390	obgE GTPase CgtA; Reviewed	99.92
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.92
PRK00089	292	era GTPase Era; Reviewed	99.92
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.92
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.92
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.92
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.92
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.92
CHL00189	742	infB translation initiation factor 2; Provisional	99.91
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.91
COG1159	298	Era GTPase [General function prediction only]	99.91
PRK05306	787	infB translation initiation factor IF-2; Validated	99.91
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.91
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.91
PRK05433	600	GTP-binding protein LepA; Provisional	99.91
PRK00093	435	GTP-binding protein Der; Reviewed	99.91
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.9
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.9
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.9
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.89
COG0486	454	ThdF Predicted GTPase [General function prediction	99.89
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.89
COG1160	444	Predicted GTPases [General function prediction onl	99.89
PRK00093	435	GTP-binding protein Der; Reviewed	99.89
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.89
COG2229	187	Predicted GTPase [General function prediction only	99.89
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.89
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.89
PRK12317	425	elongation factor 1-alpha; Reviewed	99.89
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.88
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.88
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.88
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.88
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.88
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.88
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.87
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.87
PRK10218	607	GTP-binding protein; Provisional	99.87
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.87
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.87
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.87
PRK04004	586	translation initiation factor IF-2; Validated	99.86
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.86
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.86
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.86
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.86
COG1160	444	Predicted GTPases [General function prediction onl	99.85
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.85
COG0218	200	Predicted GTPase [General function prediction only	99.85
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.85
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.84
PRK12736	394	elongation factor Tu; Reviewed	99.84
PRK12735	396	elongation factor Tu; Reviewed	99.83
COG2262	411	HflX GTPases [General function prediction only]	99.83
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.83
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.83
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.82
COG1084	346	Predicted GTPase [General function prediction only	99.82
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.82
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.81
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.81
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.81
CHL00071	409	tufA elongation factor Tu	99.81
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.8
PLN00043	447	elongation factor 1-alpha; Provisional	99.79
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.79
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.79
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.79
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.79
COG3596	296	Predicted GTPase [General function prediction only	99.79
PRK00049	396	elongation factor Tu; Reviewed	99.78
COG1163	365	DRG Predicted GTPase [General function prediction	99.78
PLN03126	478	Elongation factor Tu; Provisional	99.78
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.78
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.78
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.78
PLN03127	447	Elongation factor Tu; Provisional	99.77
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.77
KOG1145	683	consensus Mitochondrial translation initiation fac	99.77
PRK13351	687	elongation factor G; Reviewed	99.77
PTZ00141	446	elongation factor 1- alpha; Provisional	99.77
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.77
COG0536	369	Obg Predicted GTPase [General function prediction	99.76
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.76
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.75
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.75
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.75
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.74
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.74
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.74
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.73
KOG0090	238	consensus Signal recognition particle receptor, be	99.73
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.73
PRK12739	691	elongation factor G; Reviewed	99.72
PRK09602	396	translation-associated GTPase; Reviewed	99.72
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.72
PRK09866	741	hypothetical protein; Provisional	99.69
PRK00007	693	elongation factor G; Reviewed	99.68
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.67
PRK14845	1049	translation initiation factor IF-2; Provisional	99.66
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.66
PRK12740	668	elongation factor G; Reviewed	99.65
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.65
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.64
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.63
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.63
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.63
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.62
PTZ00258	390	GTP-binding protein; Provisional	99.62
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.61
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.6
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.6
PRK13768	253	GTPase; Provisional	99.6
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.59
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.59
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.58
PRK07560	731	elongation factor EF-2; Reviewed	99.57
PRK09601	364	GTP-binding protein YchF; Reviewed	99.56
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.56
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.54
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.54
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.54
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.54
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.53
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.53
PTZ00416	836	elongation factor 2; Provisional	99.52
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.52
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.5
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.5
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.49
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.48
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.46
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.45
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.43
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.42
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.42
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.4
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.39
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.38
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.37
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.36
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.35
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.35
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.35
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.34
KOG0410	410	consensus Predicted GTP binding protein [General f	99.33
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.33
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.32
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.32
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.31
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.3
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.3
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.27
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.25
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.24
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.24
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.24
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.23
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.2
PRK12289	352	GTPase RsgA; Reviewed	99.18
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.11
KOG2486	320	consensus Predicted GTPase [General function predi	99.11
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	99.09
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.09
PRK12288	347	GTPase RsgA; Reviewed	99.09
PRK00098	298	GTPase RsgA; Reviewed	99.08
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.08
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	99.07
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	99.03
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.01
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.98
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.98
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.96
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.96
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.95
KOG1143	591	consensus Predicted translation elongation factor	98.94
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.93
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.92
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.91
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.89
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.87
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.86
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.85
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.84
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.83
KOG0460	449	consensus Mitochondrial translation elongation fac	98.83
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.82
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.81
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.8
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.79
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.79
PRK10416	318	signal recognition particle-docking protein FtsY;	98.78
COG1161	322	Predicted GTPases [General function prediction onl	98.78
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.77
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.76
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.76
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.74
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.74
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.73
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.72
PRK14974	336	cell division protein FtsY; Provisional	98.71
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.71
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.7
cd03112	158	CobW_like The function of this protein family is u	98.68
PRK13796	365	GTPase YqeH; Provisional	98.68
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.66
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.63
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.61
PRK12288	347	GTPase RsgA; Reviewed	98.6
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.58
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.57
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.55
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.54
PRK01889	356	GTPase RsgA; Reviewed	98.54
PRK12289	352	GTPase RsgA; Reviewed	98.53
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.51
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.5
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.5
COG1162	301	Predicted GTPases [General function prediction onl	98.47
cd03110	179	Fer4_NifH_child This protein family's function is	98.46
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.46
PRK13695	174	putative NTPase; Provisional	98.46
PRK13796	365	GTPase YqeH; Provisional	98.45
COG3523	1188	IcmF Type VI protein secretion system component Va	98.43
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.39
PRK11537	318	putative GTP-binding protein YjiA; Provisional	98.38
COG0523	323	Putative GTPases (G3E family) [General function pr	98.35
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.31
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.31
PRK00098	298	GTPase RsgA; Reviewed	98.3
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	98.3
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	98.29
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.26
COG1162	301	Predicted GTPases [General function prediction onl	98.26
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.25
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.23
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	98.22
cd03114	148	ArgK-like The function of this protein family is u	98.21
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	98.17
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.16
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.16
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.15
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	98.15
TIGR00959	428	ffh signal recognition particle protein. This mode	98.12
PRK10867	433	signal recognition particle protein; Provisional	98.12
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.11
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.09
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	98.08
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	98.07
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	98.06
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	98.02
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	98.0
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.99
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.99
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.99
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.98
KOG2484	435	consensus GTPase [General function prediction only	97.97
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.97
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.96
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.95
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.91
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.91
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.9
PRK07261	171	topology modulation protein; Provisional	97.89
PRK08118	167	topology modulation protein; Reviewed	97.89
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.85
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.85
cd03111	106	CpaE_like This protein family consists of proteins	97.85
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.84
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.83
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.83
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.81
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.8
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.8
KOG3929	363	consensus Uncharacterized conserved protein [Funct	97.79
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.79
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.76
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.76
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.75
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.75
PRK13851	344	type IV secretion system protein VirB11; Provision	97.73
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.73
PRK10646	153	ADP-binding protein; Provisional	97.72
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.72
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	97.7
PRK13833	323	conjugal transfer protein TrbB; Provisional	97.68
KOG1533	290	consensus Predicted GTPase [General function predi	97.67
smart00382	148	AAA ATPases associated with a variety of cellular	97.65
PRK14530	215	adenylate kinase; Provisional	97.65
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.64
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.63
PRK06217	183	hypothetical protein; Validated	97.63
PRK05480	209	uridine/cytidine kinase; Provisional	97.62
PRK03839	180	putative kinase; Provisional	97.62
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.62
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.61
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.61
COG0802	149	Predicted ATPase or kinase [General function predi	97.61
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.59
PRK08233	182	hypothetical protein; Provisional	97.59
PRK04195	482	replication factor C large subunit; Provisional	97.59
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	97.59
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.59
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.58
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.58
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	97.57
PF00004	132	AAA: ATPase family associated with various cellula	97.55
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.55
PRK14738	206	gmk guanylate kinase; Provisional	97.55
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.55
cd02036	179	MinD Bacterial cell division requires the formatio	97.54
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.54
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.54
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.54
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.53
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.53
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.52
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	97.52
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.51
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	97.51
PTZ00088	229	adenylate kinase 1; Provisional	97.5
PRK14532	188	adenylate kinase; Provisional	97.49
PRK14531	183	adenylate kinase; Provisional	97.49
PRK00625	173	shikimate kinase; Provisional	97.49
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.48
PRK01889	356	GTPase RsgA; Reviewed	97.48
PRK13949	169	shikimate kinase; Provisional	97.48
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.48
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.48

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.4e-46  Score=236.19  Aligned_cols=165  Identities=42%  Similarity=0.701  Sum_probs=159.8

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   84 (170)
                      .-...+||+++|+.|||||+|+.|+....+++++..|.++++....+..+++.++++||||+|++++++...+|++++++
T Consensus         5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahG   84 (205)
T KOG0084|consen    5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   84 (205)
T ss_pred             ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCe
Confidence            44567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCe-EEEeecCCCCChHHHH
Q 030856           85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNIKGCS  163 (170)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~v~~~~  163 (170)
                      +|+|||+++.+||+.+..|+.++.++..+++|.++|+||+|+.+++.++.++++.++..++++ ++++||+++.|+++.|
T Consensus        85 ii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F  164 (205)
T KOG0084|consen   85 IIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAF  164 (205)
T ss_pred             EEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999998 9999999999999999


Q ss_pred             HHHHhh
Q 030856          164 PTIRRL  169 (170)
Q Consensus       164 ~~l~~~  169 (170)
                      ..|+..
T Consensus       165 ~~la~~  170 (205)
T KOG0084|consen  165 LTLAKE  170 (205)
T ss_pred             HHHHHH
Confidence            998864

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-43  Score=228.24  Aligned_cols=166  Identities=45%  Similarity=0.739  Sum_probs=160.5

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCc
Q 030856            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (170)
Q Consensus         4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   83 (170)
                      .+...-+||+++|++|||||+++.++....+...+..+.++++...++..++..+++++|||+|++.++.+...|+++++
T Consensus         7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~   86 (207)
T KOG0078|consen    7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM   86 (207)
T ss_pred             CCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 030856           84 VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCS  163 (170)
Q Consensus        84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (170)
                      ++++|||+++..+|+.+..|+..+..+..+++|.++||||+|+..+|++..+.++++|.++|+.|+++||++|.||++.|
T Consensus        87 gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF  166 (207)
T KOG0078|consen   87 GILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAF  166 (207)
T ss_pred             eeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHH
Confidence            99999999999999999999999999998899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhh
Q 030856          164 PTIRRL  169 (170)
Q Consensus       164 ~~l~~~  169 (170)
                      -.|++.
T Consensus       167 ~~La~~  172 (207)
T KOG0078|consen  167 LSLARD  172 (207)
T ss_pred             HHHHHH
Confidence            999864

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.4e-43  Score=221.70  Aligned_cols=164  Identities=41%  Similarity=0.778  Sum_probs=158.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ...+|++++|..++|||||+-|+..+.+.....+|++.-+....+.+++..+++.||||+|+++|.++...|++++++.|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            46799999999999999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      +|||+++.+||..++.|+.++.....+++.+.+||||+|+.+.|++..++++.+|...++.|+++||+++.|++++|..|
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I  162 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI  162 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence            99999999999999999999999988899999999999999999999999999999999999999999999999999999


Q ss_pred             HhhC
Q 030856          167 RRLI  170 (170)
Q Consensus       167 ~~~i  170 (170)
                      .+.|
T Consensus       163 a~~l  166 (200)
T KOG0092|consen  163 AEKL  166 (200)
T ss_pred             HHhc
Confidence            9865

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-42  Score=220.46  Aligned_cols=165  Identities=81%  Similarity=1.167  Sum_probs=158.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ..+..|++++|..+|||||||+++.++.+...|.+|++.++...++.+.+..+++++|||+|+++++.+...|+++++++
T Consensus        19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va   98 (221)
T KOG0094|consen   19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   98 (221)
T ss_pred             cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence            45669999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCC-CCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTERGS-DVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSP  164 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~  164 (170)
                      |+|||+++..+|+....|+..+.++.+. ++.+++||||.|+.+++++..++.+..|+++++.|+++||+.|.||.++|.
T Consensus        99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFr  178 (221)
T KOG0094|consen   99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFR  178 (221)
T ss_pred             EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHH
Confidence            9999999999999999999999999886 589999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhC
Q 030856          165 TIRRLI  170 (170)
Q Consensus       165 ~l~~~i  170 (170)
                      .|+..+
T Consensus       179 rIaa~l  184 (221)
T KOG0094|consen  179 RIAAAL  184 (221)
T ss_pred             HHHHhc
Confidence            887643

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-42  Score=218.13  Aligned_cols=164  Identities=37%  Similarity=0.688  Sum_probs=158.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ....+|+.++|+.|||||+|+.+++...+.+.+..|.+.++....++++++++++++|||+|++.+++...+|++++-+.
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      |+|||++++++|..+..|+..++++..+++.+++++||+|+...|.++.++.+.||+++|+.++++||++++|++|.|..
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n  162 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN  162 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence            99999999999999999999999998899999999999999999999999999999999999999999999999999987


Q ss_pred             HHhh
Q 030856          166 IRRL  169 (170)
Q Consensus       166 l~~~  169 (170)
                      +...
T Consensus       163 ta~~  166 (216)
T KOG0098|consen  163 TAKE  166 (216)
T ss_pred             HHHH
Confidence            7654

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=8.6e-42  Score=210.89  Aligned_cols=164  Identities=40%  Similarity=0.698  Sum_probs=156.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ...+||+++|.+|+|||+|+-++....+++....++++++..+.+.+++..+++.||||+|+++++.+..+|++++.++|
T Consensus         9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI   88 (209)
T KOG0080|consen    9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII   88 (209)
T ss_pred             ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence            45699999999999999999999999999888888999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      +|||++.+++|..+..|++++..+.. +++..++|+||+|...+|.++.++...+|+++++-|++|||++.+++...|+.
T Consensus        89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fee  168 (209)
T KOG0080|consen   89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEE  168 (209)
T ss_pred             EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHH
Confidence            99999999999999999999988875 77888999999999889999999999999999999999999999999999999


Q ss_pred             HHhhC
Q 030856          166 IRRLI  170 (170)
Q Consensus       166 l~~~i  170 (170)
                      ++.+|
T Consensus       169 lveKI  173 (209)
T KOG0080|consen  169 LVEKI  173 (209)
T ss_pred             HHHHH
Confidence            98764

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=8.4e-41  Score=221.42  Aligned_cols=162  Identities=35%  Similarity=0.595  Sum_probs=150.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ...+||+++|..|+|||||+.++..+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++|
T Consensus         4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il   83 (189)
T cd04121           4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII   83 (189)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            35699999999999999999999998887777788888887777888888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      +|||++++++|+.+..|+..+.... ++.|++||+||.|+...+.+..++++.+++..++++++|||++|.|++++|++|
T Consensus        84 lVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l  162 (189)
T cd04121          84 LVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTEL  162 (189)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999999997765 689999999999998888889999999999999999999999999999999999


Q ss_pred             Hhh
Q 030856          167 RRL  169 (170)
Q Consensus       167 ~~~  169 (170)
                      ++.
T Consensus       163 ~~~  165 (189)
T cd04121         163 ARI  165 (189)
T ss_pred             HHH
Confidence            875

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=7.2e-41  Score=223.64  Aligned_cols=160  Identities=34%  Similarity=0.637  Sum_probs=148.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +.|+++|..|||||||++++..+.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            36899999999999999999999998888899988888888888888999999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhc-CCeEEEeecCCCCChHHHHHHHHh
Q 030856           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      |++++++|+.+..|+..+.....++.|+++|+||+|+...+++..++++++++.. ++.+++|||++|.|++++|+++++
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999999887776678999999999999888889989999999885 789999999999999999999986


Q ss_pred             h
Q 030856          169 L  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       161 ~  161 (202)
T cd04120         161 D  161 (202)
T ss_pred             H
Confidence            4

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=2.3e-39  Score=211.52  Aligned_cols=161  Identities=34%  Similarity=0.649  Sum_probs=148.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      .+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            37999999999999999999999988888888888888777777888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ||++++++|+.+..|+..+.....++.|+++|+||+|+..++.+..++++.+++..++++++|||++|.|++++|.++++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999887776678999999999999888888889999999999999999999999999999999986


Q ss_pred             h
Q 030856          169 L  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       162 ~  162 (166)
T cd04122         162 K  162 (166)
T ss_pred             H
Confidence            5

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=5.4e-39  Score=208.75  Aligned_cols=161  Identities=37%  Similarity=0.654  Sum_probs=149.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      ++|+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+..+...++.++|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            48999999999999999999999998888899988888788888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      |++++++|+.+..|+..+......+.|+++|+||.|+.+++.+..+++..+++..++++++|||++|.|++++|.+|++.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999999999999999887765679999999999998888888899999999999999999999999999999999876


Q ss_pred             C
Q 030856          170 I  170 (170)
Q Consensus       170 i  170 (170)
                      +
T Consensus       161 ~  161 (161)
T cd04117         161 V  161 (161)
T ss_pred             C
Confidence            4

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=4.6e-39  Score=212.15  Aligned_cols=161  Identities=25%  Similarity=0.471  Sum_probs=145.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ...+||+++|++|+|||||++++..+.+...+.|+.+..+ ...+.+++..+.+.+|||+|++.+..+...+++++|+++
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            4578999999999999999999999999888889987555 356678888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCC------------CcccCHHHHHHHHHhcCC-eEEEee
Q 030856           87 VVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIETS  152 (170)
Q Consensus        87 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S  152 (170)
                      +|||++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+            .+.+..++++++|++.++ +|++||
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S  160 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  160 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence            99999999999997 79999988765 6799999999999864            346889999999999996 999999


Q ss_pred             cCCCCC-hHHHHHHHHhh
Q 030856          153 AKAGFN-IKGCSPTIRRL  169 (170)
Q Consensus       153 ~~~~~~-v~~~~~~l~~~  169 (170)
                      |++|.| ++++|..+++.
T Consensus       161 Ak~~~n~v~~~F~~~~~~  178 (182)
T cd04172         161 ALQSENSVRDIFHVATLA  178 (182)
T ss_pred             cCCCCCCHHHHHHHHHHH
Confidence            999998 99999998863

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=3.8e-39  Score=211.38  Aligned_cols=158  Identities=35%  Similarity=0.575  Sum_probs=143.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +||+++|.+|+|||+|+.++..+.+...+.+|.+..+ ...+..++..+++.+|||+|++++..+...+++++|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            6899999999999999999999999888999987655 455667888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCc----------ccCHHHHHHHHHhcCC-eEEEeecCCCC
Q 030856           90 DVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKR----------QVSIEEGEAKSRELNV-MFIETSAKAGF  157 (170)
Q Consensus        90 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~S~~~~~  157 (170)
                      |++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+.+          .+..++++.+++..++ .|++|||++|.
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999998 68999987765 579999999999996543          4788999999999998 69999999999


Q ss_pred             ChHHHHHHHHhh
Q 030856          158 NIKGCSPTIRRL  169 (170)
Q Consensus       158 ~v~~~~~~l~~~  169 (170)
                      |++++|+.+++.
T Consensus       160 nV~~~F~~~~~~  171 (176)
T cd04133         160 NVKAVFDAAIKV  171 (176)
T ss_pred             CHHHHHHHHHHH
Confidence            999999999874

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-39  Score=198.70  Aligned_cols=163  Identities=37%  Similarity=0.688  Sum_probs=155.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      ...|+.++|...+|||+|+.++.+..+...+.++.++++..+++.-..+.+++++|||+|++.|+.....++++++++|+
T Consensus        20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL   99 (193)
T KOG0093|consen   20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   99 (193)
T ss_pred             ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence            35799999999999999999999999999999999999999988777788999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR  167 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (170)
                      +||++|.++|..++.|.-.+..+...+.|+++|+||||+..+|.++.+..+.++.+.|+.|+++||+.+.|++.+|+.++
T Consensus       100 myDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv  179 (193)
T KOG0093|consen  100 MYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLV  179 (193)
T ss_pred             EEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHH
Confidence            99999999999999999999999889999999999999999999999999999999999999999999999999999987


Q ss_pred             hhC
Q 030856          168 RLI  170 (170)
Q Consensus       168 ~~i  170 (170)
                      ..|
T Consensus       180 ~~I  182 (193)
T KOG0093|consen  180 DII  182 (193)
T ss_pred             HHH
Confidence            643

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=9.6e-39  Score=209.51  Aligned_cols=160  Identities=33%  Similarity=0.524  Sum_probs=144.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      .+||+++|.+|+|||||++++..+.++..+.++.+..+ ......++..+.+.+||+||++++..++..++.++|++|+|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            57999999999999999999999998888888887444 44566788888999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856           89 YDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR  167 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (170)
                      ||++++++|+.+..|+..+.... .+++|+++|+||+|+.+.+.+..++++.+++.+++++++|||++|.|++++|++|+
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999998888776643 36799999999999988888888999999999999999999999999999999998


Q ss_pred             hh
Q 030856          168 RL  169 (170)
Q Consensus       168 ~~  169 (170)
                      +.
T Consensus       161 ~~  162 (172)
T cd04141         161 RE  162 (172)
T ss_pred             HH
Confidence            64

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=2e-38  Score=207.35  Aligned_cols=163  Identities=42%  Similarity=0.726  Sum_probs=149.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      ..+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+......+++++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            35899999999999999999999999888888888888777777778888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR  167 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (170)
                      |||++++++|+.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+++.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  161 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA  161 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999999887667899999999999987777888889999999999999999999999999999998


Q ss_pred             hhC
Q 030856          168 RLI  170 (170)
Q Consensus       168 ~~i  170 (170)
                      +.+
T Consensus       162 ~~~  164 (167)
T cd01867         162 KDI  164 (167)
T ss_pred             HHH
Confidence            753

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=2.3e-38  Score=206.61  Aligned_cols=160  Identities=37%  Similarity=0.687  Sum_probs=146.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||++|.+.+..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999988888888887777666667777889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      |++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|+++++.
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999987766689999999999998877778888899999999999999999999999999999875

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=2.3e-39  Score=204.32  Aligned_cols=169  Identities=38%  Similarity=0.629  Sum_probs=156.5

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhc
Q 030856            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (170)
Q Consensus         1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   80 (170)
                      |+......-+||.+.|++|+|||||++++...++...+..+++.++..+.+.+++..+.++||||+|+++++++-..+++
T Consensus         1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR   80 (210)
T KOG0394|consen    1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR   80 (210)
T ss_pred             CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence            56666677899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCC--cccCHHHHHHHHHhcC-CeEEEeec
Q 030856           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEK--RQVSIEEGEAKSRELN-VMFIETSA  153 (170)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~vvv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~S~  153 (170)
                      ++|.++++||++++++|+.+..|..++.....    ..-|++++|||+|+...  ++++...++.+|+..| ++|+++||
T Consensus        81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA  160 (210)
T KOG0394|consen   81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA  160 (210)
T ss_pred             CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence            99999999999999999999999999877654    45789999999998753  8899999999999775 69999999


Q ss_pred             CCCCChHHHHHHHHhh
Q 030856          154 KAGFNIKGCSPTIRRL  169 (170)
Q Consensus       154 ~~~~~v~~~~~~l~~~  169 (170)
                      ++..||++.|+.+.+.
T Consensus       161 K~~~NV~~AFe~ia~~  176 (210)
T KOG0394|consen  161 KEATNVDEAFEEIARR  176 (210)
T ss_pred             cccccHHHHHHHHHHH
Confidence            9999999999998763

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.1e-39  Score=199.09  Aligned_cols=160  Identities=41%  Similarity=0.695  Sum_probs=153.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      -++.+|+|++|+|||+|+.++....+..+|..++++++...++.+++..++++|||++|++.++.+...|+++.+++++|
T Consensus         8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV   87 (198)
T KOG0079|consen    8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV   87 (198)
T ss_pred             HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence            36778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ||+++.+||.+...|+.++...+ +.+|-++|+||.|..+.+.+..++++.++...|+.+|++|+++++|++..|.-|.+
T Consensus        88 YDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~  166 (198)
T KOG0079|consen   88 YDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITK  166 (198)
T ss_pred             EECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHH
Confidence            99999999999999999998877 58999999999999999999999999999999999999999999999999998876


Q ss_pred             h
Q 030856          169 L  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       167 q  167 (198)
T KOG0079|consen  167 Q  167 (198)
T ss_pred             H
Confidence            4

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=1.6e-38  Score=209.14  Aligned_cols=158  Identities=26%  Similarity=0.490  Sum_probs=142.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      ++||+++|++|+|||||++++..+.++..+.|+.+..+. ..+.+++..+.+.+|||+|++.+..+...+++++|++|+|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            479999999999999999999999998888898876553 5667888899999999999999999999999999999999


Q ss_pred             EeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCC------------CcccCHHHHHHHHHhcCC-eEEEeecC
Q 030856           89 YDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIETSAK  154 (170)
Q Consensus        89 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S~~  154 (170)
                      ||++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+            .+.+..++++++++..++ +|++|||+
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            999999999996 78999888765 6899999999999854            245889999999999997 89999999


Q ss_pred             CCCC-hHHHHHHHHh
Q 030856          155 AGFN-IKGCSPTIRR  168 (170)
Q Consensus       155 ~~~~-v~~~~~~l~~  168 (170)
                      +|++ ++++|..+++
T Consensus       159 ~~~~~v~~~F~~~~~  173 (178)
T cd04131         159 TSEKSVRDIFHVATM  173 (178)
T ss_pred             cCCcCHHHHHHHHHH
Confidence            9995 9999999876

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=2.3e-38  Score=210.94  Aligned_cols=160  Identities=31%  Similarity=0.492  Sum_probs=141.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      ..+||+++|..|+|||||+.++..+.++..+.|+.+..+ .....+++..+.+.+|||+|++.++.++..+++++|++|+
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il   80 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII   80 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence            468999999999999999999999999888889987554 3445678888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcC-CeEEEeec
Q 030856           88 VYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELN-VMFIETSA  153 (170)
Q Consensus        88 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S~  153 (170)
                      |||++++++|+.+. .|+..+.... +++|+++|+||.|+.+.            +.+..++++.+++..+ +++++|||
T Consensus        81 vydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA  159 (191)
T cd01875          81 CFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA  159 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence            99999999999996 6887776654 68999999999998654            2367788999999998 59999999


Q ss_pred             CCCCChHHHHHHHHhh
Q 030856          154 KAGFNIKGCSPTIRRL  169 (170)
Q Consensus       154 ~~~~~v~~~~~~l~~~  169 (170)
                      ++|.|++++|+++++.
T Consensus       160 k~g~~v~e~f~~l~~~  175 (191)
T cd01875         160 LNQDGVKEVFAEAVRA  175 (191)
T ss_pred             CCCCCHHHHHHHHHHH
Confidence            9999999999999875

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=3.7e-38  Score=205.85  Aligned_cols=161  Identities=41%  Similarity=0.723  Sum_probs=148.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      .+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            37999999999999999999999988888888888888777777888888999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ||++++++++.+..|+..+.....++.|+++|+||.|+...+.+..++++.++...+++++++||++|.|++++|.+|++
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            99999999999999999988776568999999999999877788889999999999999999999999999999999987


Q ss_pred             h
Q 030856          169 L  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       162 ~  162 (166)
T cd01869         162 E  162 (166)
T ss_pred             H
Confidence            5

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=2.9e-38  Score=205.57  Aligned_cols=160  Identities=43%  Similarity=0.734  Sum_probs=152.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEe
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   90 (170)
                      ||+++|++|||||||++++.++.++..+.++.+.+.....+..++..+.+.+||++|++.+..+...++.++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999999889999999999999999999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhhC
Q 030856           91 VASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                      ++++++|+.+..|+..+......+.|+++++||.|+.+.+.++.++++++++.++++|++||++++.|+.++|..+++.|
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999999998876799999999999988889999999999999999999999999999999999998753

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=3.3e-38  Score=211.88  Aligned_cols=160  Identities=36%  Similarity=0.590  Sum_probs=145.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeC-CeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      +||+++|++|+|||||++++.++.+...+.++.+.++....+..+ +..+.+.+||+||++.+..++..+++++|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999998888888999888877777777 7788999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhc----CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC-CeEEEeecCCCCChHHHH
Q 030856           89 YDVASRQSFLNTSKWIDEVRTER----GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFNIKGCS  163 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~~  163 (170)
                      ||++++++|+.+..|+..+....    ..++|+++|+||+|+...+.+..++++++++..+ +.++++||++|.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999998876542    2578999999999997667788899999999999 599999999999999999


Q ss_pred             HHHHhh
Q 030856          164 PTIRRL  169 (170)
Q Consensus       164 ~~l~~~  169 (170)
                      ++|++.
T Consensus       161 ~~l~~~  166 (201)
T cd04107         161 RFLVKN  166 (201)
T ss_pred             HHHHHH
Confidence            999875

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=3.9e-38  Score=213.74  Aligned_cols=162  Identities=27%  Similarity=0.460  Sum_probs=145.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ....+||+++|++|||||+|++++..+.+...+.|+.+.++. ..+..++..+.+.+|||+|++.|..+...++.++|++
T Consensus        10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~v   88 (232)
T cd04174          10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV   88 (232)
T ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEE
Confidence            346789999999999999999999999998889999886654 4567788899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCC------------CcccCHHHHHHHHHhcCC-eEEEe
Q 030856           86 VVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIET  151 (170)
Q Consensus        86 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~  151 (170)
                      |+|||++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+            .+.+..++++++|+..++ .|++|
T Consensus        89 IlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~Et  167 (232)
T cd04174          89 LLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLEC  167 (232)
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEc
Confidence            999999999999984 89999988765 5789999999999864            367889999999999999 69999


Q ss_pred             ecCCCC-ChHHHHHHHHhh
Q 030856          152 SAKAGF-NIKGCSPTIRRL  169 (170)
Q Consensus       152 S~~~~~-~v~~~~~~l~~~  169 (170)
                      ||++|. |++++|..+++.
T Consensus       168 SAktg~~~V~e~F~~~~~~  186 (232)
T cd04174         168 SAFTSEKSIHSIFRSASLL  186 (232)
T ss_pred             cCCcCCcCHHHHHHHHHHH
Confidence            999998 899999998764

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=6.3e-38  Score=204.93  Aligned_cols=161  Identities=31%  Similarity=0.567  Sum_probs=147.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++++|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999998888999998888888888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcC-----CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 030856           90 DVASRQSFLNTSKWIDEVRTERG-----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSP  164 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~  164 (170)
                      |++++++++.+..|+..+.....     .+.|+++|+||+|+.+++....++.+.++...+++++++||++|.|++++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999987654     4799999999999976677788888889999999999999999999999999


Q ss_pred             HHHhhC
Q 030856          165 TIRRLI  170 (170)
Q Consensus       165 ~l~~~i  170 (170)
                      +|.+.+
T Consensus       161 ~l~~~l  166 (168)
T cd04119         161 TLFSSI  166 (168)
T ss_pred             HHHHHH
Confidence            998754

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.4e-39  Score=206.19  Aligned_cols=164  Identities=37%  Similarity=0.686  Sum_probs=158.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      -..-+||+++|++++|||-|+.++....+..+..+|.++++......++++.++.+||||+|+++|+.....|++++.+.
T Consensus        11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGA   90 (222)
T KOG0087|consen   11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGA   90 (222)
T ss_pred             cceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccccee
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      ++|||+++..+|+.+..|+.+++.+.++++++++|+||+|+...|.+..++++.++...+..|+++||.++.|+++.|..
T Consensus        91 llVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~  170 (222)
T KOG0087|consen   91 LLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFER  170 (222)
T ss_pred             EEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHhh
Q 030856          166 IRRL  169 (170)
Q Consensus       166 l~~~  169 (170)
                      +...
T Consensus       171 ~l~~  174 (222)
T KOG0087|consen  171 VLTE  174 (222)
T ss_pred             HHHH
Confidence            7754

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=5.4e-38  Score=207.57  Aligned_cols=162  Identities=39%  Similarity=0.660  Sum_probs=146.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeC----------CeEEEEEEEecCChhhhhhhhhh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE----------DRTVRLQLWDTAGQERFRSLIPS   77 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~~   77 (170)
                      ..+||+++|++|+|||||++++..+.+...+.++.+.++....+...          +..+.+.+||+||++.+...+..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            45899999999999999999999999988888888877776655443          45688999999999999999999


Q ss_pred             hhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCC
Q 030856           78 YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG  156 (170)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  156 (170)
                      +++++|++++|||++++++|..+..|+..+.... .++.|+++|+||+|+.+.+.+..++++.++...+++++++||++|
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~  162 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG  162 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence            9999999999999999999999999999987654 357899999999999887888888999999999999999999999


Q ss_pred             CChHHHHHHHHhh
Q 030856          157 FNIKGCSPTIRRL  169 (170)
Q Consensus       157 ~~v~~~~~~l~~~  169 (170)
                      .|++++|++|.+.
T Consensus       163 ~~v~~l~~~l~~~  175 (180)
T cd04127         163 TNVEKAVERLLDL  175 (180)
T ss_pred             CCHHHHHHHHHHH
Confidence            9999999999874

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.9e-39  Score=196.44  Aligned_cols=163  Identities=37%  Similarity=0.650  Sum_probs=155.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ..-+|++++|+.|+|||+|+++++..++.+....++++++....+.+.++.++++||||+|++.+++..+.|++++-+.+
T Consensus         7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl   86 (214)
T KOG0086|consen    7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL   86 (214)
T ss_pred             hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence            34589999999999999999999999999998999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      +|||++++++|+.+..|+...+....+++-+++++||.|+.++++++..++..+|.+..+.+.++|+++|+|++|.|-..
T Consensus        87 LVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c  166 (214)
T KOG0086|consen   87 LVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKC  166 (214)
T ss_pred             EEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHH
Confidence            99999999999999999999999988999999999999999999999999999999999999999999999999999776


Q ss_pred             Hhh
Q 030856          167 RRL  169 (170)
Q Consensus       167 ~~~  169 (170)
                      ++.
T Consensus       167 ~~t  169 (214)
T KOG0086|consen  167 ART  169 (214)
T ss_pred             HHH
Confidence            653

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=1.4e-37  Score=202.92  Aligned_cols=163  Identities=39%  Similarity=0.674  Sum_probs=148.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      ..+||+++|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            45899999999999999999999988887777888777777777788888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCCChHHHHHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~l  166 (170)
                      |||++++++++.+..|+..+......+.|+++|+||+|+.+.++...+++..+++.+++ .++++||++|.|++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l  161 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM  161 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999876667899999999999988778888889999999887 78999999999999999999


Q ss_pred             HhhC
Q 030856          167 RRLI  170 (170)
Q Consensus       167 ~~~i  170 (170)
                      ++.+
T Consensus       162 ~~~l  165 (165)
T cd01864         162 ATEL  165 (165)
T ss_pred             HHhC
Confidence            9864

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=1.6e-37  Score=202.65  Aligned_cols=162  Identities=37%  Similarity=0.718  Sum_probs=148.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      .+||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+..+...++++++++++|
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   82 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   82 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence            47999999999999999999999988878888888888888888888888999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ||++++++++.+..|+..+......+.|+++|+||.|+...+.+..++.+.++...+++++++||++|.|++++|++|.+
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  162 (165)
T cd01868          83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLT  162 (165)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999988876667999999999999877888888899999988999999999999999999999987


Q ss_pred             hC
Q 030856          169 LI  170 (170)
Q Consensus       169 ~i  170 (170)
                      .+
T Consensus       163 ~i  164 (165)
T cd01868         163 EI  164 (165)
T ss_pred             Hh
Confidence            64

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=1.5e-37  Score=210.47  Aligned_cols=164  Identities=38%  Similarity=0.671  Sum_probs=152.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ....+||+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..++++++++
T Consensus         9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~   88 (216)
T PLN03110          9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA   88 (216)
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence            34669999999999999999999999988878889999898888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      ++|||++++++|+.+..|+..+......+.|+++|+||+|+...+.+..++++.++..++++++++||++|.|++++|++
T Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~  168 (216)
T PLN03110         89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQT  168 (216)
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998877678999999999999888888888999999999999999999999999999999


Q ss_pred             HHhh
Q 030856          166 IRRL  169 (170)
Q Consensus       166 l~~~  169 (170)
                      |++.
T Consensus       169 l~~~  172 (216)
T PLN03110        169 ILLE  172 (216)
T ss_pred             HHHH
Confidence            9865

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=7.2e-38  Score=206.83  Aligned_cols=159  Identities=22%  Similarity=0.496  Sum_probs=141.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +||+++|..|+|||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998889999998888888888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC-----CcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 030856           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE-----KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSP  164 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~  164 (170)
                      |++++++++.+..|+..+........| ++|+||+|+..     .+....++++++++..++++++|||++|.|++++|+
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999998876555667 67899999852     122224677888999999999999999999999999


Q ss_pred             HHHhh
Q 030856          165 TIRRL  169 (170)
Q Consensus       165 ~l~~~  169 (170)
                      ++++.
T Consensus       160 ~l~~~  164 (182)
T cd04128         160 IVLAK  164 (182)
T ss_pred             HHHHH
Confidence            99864

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=8.2e-38  Score=203.56  Aligned_cols=161  Identities=35%  Similarity=0.546  Sum_probs=142.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      ++||+++|++|+|||||++++..+.+...+.++.+ +.....+..++..+.+.+|||||++++..++..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   79 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence            37999999999999999999999888777777765 44455667788888999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856           89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR  167 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (170)
                      ||++++++++.+..|+..+..... ++.|+++|+||+|+.+.+.+..++...+++.++++++++||++|.|++++|++|.
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04136          80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999998877543 6799999999999977777777888888888889999999999999999999998


Q ss_pred             hhC
Q 030856          168 RLI  170 (170)
Q Consensus       168 ~~i  170 (170)
                      +.+
T Consensus       160 ~~~  162 (163)
T cd04136         160 RQI  162 (163)
T ss_pred             Hhc
Confidence            764

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=2.2e-37  Score=201.21  Aligned_cols=161  Identities=38%  Similarity=0.700  Sum_probs=148.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +||+++|++|+|||||++++.+..+...+.++.+.++......+++..+.+.+||+||++.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999888777888887777777778888889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      |+++++++..+..|+..+.....++.|+++|+||.|+...+.+..+++..+++..++.++++||+++.|++++|+++++.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            99999999999999998877767889999999999998878888899999999999999999999999999999999986


Q ss_pred             C
Q 030856          170 I  170 (170)
Q Consensus       170 i  170 (170)
                      +
T Consensus       161 ~  161 (161)
T cd04113         161 I  161 (161)
T ss_pred             C
Confidence            4

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=2.2e-37  Score=202.56  Aligned_cols=161  Identities=37%  Similarity=0.702  Sum_probs=148.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      .+||+++|.+|+|||||++++..+.+...+.++.+.++....+..++....+.+||+||++.+..+...+++.+|++++|
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v   83 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   83 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence            48999999999999999999999988777778888888777788888888999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ||++++++++.+..|+..+.....++.|+++|+||.|+.+.+.+..++++.++...+++++++||+++.|++++|.++++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~  163 (168)
T cd01866          84 YDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAK  163 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998876678999999999999877778888999999999999999999999999999999987


Q ss_pred             h
Q 030856          169 L  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       164 ~  164 (168)
T cd01866         164 E  164 (168)
T ss_pred             H
Confidence            5

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=2.5e-37  Score=205.66  Aligned_cols=160  Identities=42%  Similarity=0.707  Sum_probs=147.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +||+++|++|||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|.+.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999988778888888887777788888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      |++++++++.+..|+..+......+.|+++|+||.|+.+.+.+..++++.+++..+++++++||++|.|++++|.+|++.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999988766679999999999998778888889999999999999999999999999999999875

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=2.1e-37  Score=209.80  Aligned_cols=160  Identities=36%  Similarity=0.530  Sum_probs=146.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCC-eEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      +||+++|++|+|||||++++.+..+...+.++.+.++....+.+++ ..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999888899999888877777754 578999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856           89 YDVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      ||++++++|+.+..|+..+.....   .+.|+++|+||+|+.+.+.+..++++.+++.++++++++||++|+|++++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999999999887653   35789999999999877888889999999999999999999999999999999


Q ss_pred             HHhh
Q 030856          166 IRRL  169 (170)
Q Consensus       166 l~~~  169 (170)
                      |++.
T Consensus       161 l~~~  164 (215)
T cd04109         161 LAAE  164 (215)
T ss_pred             HHHH
Confidence            9875

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=1.5e-37  Score=202.56  Aligned_cols=161  Identities=32%  Similarity=0.536  Sum_probs=142.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      ++||+++|.+|+|||||++++..+.+...+.++.+..+ ......++..+.+.+|||||++.+..++..+++++|++++|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            47999999999999999999998887777777776443 45566778888999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856           89 YDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR  167 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (170)
                      ||++++++++.+..|+..+.... ..+.|+++|+||+|+..++.+..+++..+++..+++++++||++|.|++++|.+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  159 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV  159 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999999887654 36899999999999987777777888889999999999999999999999999998


Q ss_pred             hhC
Q 030856          168 RLI  170 (170)
Q Consensus       168 ~~i  170 (170)
                      +.+
T Consensus       160 ~~l  162 (164)
T cd04175         160 RQI  162 (164)
T ss_pred             HHh
Confidence            764

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-38  Score=194.61  Aligned_cols=161  Identities=38%  Similarity=0.648  Sum_probs=154.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      -+||+++|..|+|||+|++++..+-+++....+.+.++..+++.+++.+++++||||+|++++++...+|++.++++|++
T Consensus         7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv   86 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ||++..++|+.+..|+.++..+...++.-++|+||.|+.+.+++..+.++++++.....|+++||++.+|++.+|..++.
T Consensus        87 ydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~  166 (213)
T KOG0095|consen   87 YDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLAC  166 (213)
T ss_pred             EecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHH
Confidence            99999999999999999999998888999999999999999999999999999999999999999999999999998874


Q ss_pred             h
Q 030856          169 L  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       167 r  167 (213)
T KOG0095|consen  167 R  167 (213)
T ss_pred             H
Confidence            3

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=2.4e-37  Score=203.38  Aligned_cols=158  Identities=30%  Similarity=0.477  Sum_probs=139.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +||+++|.+|+|||||++++.++.++..+.|+.+..+. ..+..++..+.+.+||++|++.+..++..++.++|++|+||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            79999999999999999999999998888899876554 44567788899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcC-CeEEEeecCC
Q 030856           90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELN-VMFIETSAKA  155 (170)
Q Consensus        90 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S~~~  155 (170)
                      |++++++|+.+. .|+..+.... ++.|+++|+||+|+.+.            +.+..++++++++..+ +.+++|||++
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t  159 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence            999999999996 5888876654 57999999999998643            5677889999999887 6999999999


Q ss_pred             CCChHHHHHHHHhh
Q 030856          156 GFNIKGCSPTIRRL  169 (170)
Q Consensus       156 ~~~v~~~~~~l~~~  169 (170)
                      |.|++++|+.+++.
T Consensus       160 g~~v~~~f~~~~~~  173 (175)
T cd01874         160 QKGLKNVFDEAILA  173 (175)
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999999999864

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=4.9e-37  Score=199.76  Aligned_cols=159  Identities=36%  Similarity=0.668  Sum_probs=144.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeC--CeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE--DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      +||+++|.+|+|||||++++.++.+...+.++.+.++....+...  +..+.+.+||+||++.+...+..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999998888888888888877776666  677899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR  167 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (170)
                      |||++++++++.+..|+..+.... .++|+++|+||.|+..++.+..+++..+++..+++++++|+++|.|++++|++|.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999998886654 5899999999999988778888889999999999999999999999999999998


Q ss_pred             hh
Q 030856          168 RL  169 (170)
Q Consensus       168 ~~  169 (170)
                      +.
T Consensus       160 ~~  161 (162)
T cd04106         160 EK  161 (162)
T ss_pred             Hh
Confidence            64

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=3.3e-37  Score=205.16  Aligned_cols=162  Identities=32%  Similarity=0.539  Sum_probs=144.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ...+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++++|+++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii   81 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL   81 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence            4579999999999999999999999988777778776444 556677888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      +|||++++++|+.+..|+..+..... ++.|+++|+||+|+.+.+.+..+++..+++.++++++++||++|.|++++|++
T Consensus        82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~  161 (189)
T PTZ00369         82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE  161 (189)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence            99999999999999999998877643 58999999999999777777888888899988999999999999999999999


Q ss_pred             HHhh
Q 030856          166 IRRL  169 (170)
Q Consensus       166 l~~~  169 (170)
                      |++.
T Consensus       162 l~~~  165 (189)
T PTZ00369        162 LVRE  165 (189)
T ss_pred             HHHH
Confidence            9865

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=5.4e-37  Score=205.59  Aligned_cols=161  Identities=39%  Similarity=0.695  Sum_probs=147.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      ..++|+++|++|+|||||++++.+..+...+.++.+.++....+...+..+.+.+||+||++.+..++..++.++|++++
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil   84 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV   84 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence            46899999999999999999999998888888898888877777778888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR  167 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (170)
                      |||++++++|+.+..|+..+.... +..|+++|+||+|+.+.+.+..+++..++...+++++++|+++|.|++++|++|.
T Consensus        85 v~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~  163 (199)
T cd04110          85 VYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCIT  163 (199)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHH
Confidence            999999999999999999887654 5789999999999987777788889999999999999999999999999999998


Q ss_pred             hh
Q 030856          168 RL  169 (170)
Q Consensus       168 ~~  169 (170)
                      +.
T Consensus       164 ~~  165 (199)
T cd04110         164 EL  165 (199)
T ss_pred             HH
Confidence            64

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=9.4e-37  Score=198.23  Aligned_cols=161  Identities=81%  Similarity=1.170  Sum_probs=148.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      .||+++|++|||||||++++.+..+...+.++.+.++....+..++..+++.+||+||++.+..++..+++++|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999988888888888888888888888889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      |++++++|+.+..|+..+......+.|+++++||+|+.+.+....++...+++..+++++++|++++.|+++++++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999999877665679999999999997777778888899999999999999999999999999999886


Q ss_pred             C
Q 030856          170 I  170 (170)
Q Consensus       170 i  170 (170)
                      +
T Consensus       161 l  161 (161)
T cd01861         161 L  161 (161)
T ss_pred             C
Confidence            4

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=4.2e-37  Score=208.54  Aligned_cols=160  Identities=31%  Similarity=0.560  Sum_probs=143.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ...+||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            67899999999999999999999999988888999988888877777778899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      +|||++++++|+.+..|+..+.... ++.|+++|+||+|+.. +.+..++. .+++..+++|++|||++|.|++++|.+|
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l  167 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence            9999999999999999999998764 6799999999999853 34444444 6778888999999999999999999999


Q ss_pred             Hhh
Q 030856          167 RRL  169 (170)
Q Consensus       167 ~~~  169 (170)
                      ++.
T Consensus       168 ~~~  170 (219)
T PLN03071        168 ARK  170 (219)
T ss_pred             HHH
Confidence            865

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=6.2e-37  Score=206.71  Aligned_cols=161  Identities=38%  Similarity=0.716  Sum_probs=146.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEe-CCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      .+||+++|++|+|||||++++.++.+...+.++.+.++....+.. ++..+.+.+||++|++.+..++..+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            589999999999999999999999888777888888887777766 4667899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      |||++++++|+.+..|+..+..... ...|+++|+||.|+...+.+..++...+++.++++++++||++|.|++++|++|
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l  161 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL  161 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999877654 457889999999998878888899999999999999999999999999999999


Q ss_pred             Hhh
Q 030856          167 RRL  169 (170)
Q Consensus       167 ~~~  169 (170)
                      ++.
T Consensus       162 ~~~  164 (211)
T cd04111         162 TQE  164 (211)
T ss_pred             HHH
Confidence            875

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=5.3e-37  Score=199.80  Aligned_cols=161  Identities=35%  Similarity=0.556  Sum_probs=142.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      ++||+++|.+|+|||||++++..+.+...+.++.+ +........++....+.+||+||.+.+..++..++.++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            47999999999999999999999988877777665 45556677788888999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856           89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR  167 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (170)
                      ||++++++++.+..|+..+..... .+.|+++|+||+|+...+.+...+...+++..+++++++||+++.|++++|.+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04176          80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999888877543 6899999999999877677777778888888889999999999999999999998


Q ss_pred             hhC
Q 030856          168 RLI  170 (170)
Q Consensus       168 ~~i  170 (170)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd04176         160 RQM  162 (163)
T ss_pred             Hhc
Confidence            764

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=1.1e-36  Score=198.45  Aligned_cols=161  Identities=46%  Similarity=0.791  Sum_probs=147.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+......++.++|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999999888788888888888778888888889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      |++++++++.+..|+..+.....++.|+++|+||+|+...+.+..+.++++++..+++++++|++++.|+++++++|.+.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999888776789999999999987777778888999999999999999999999999999999875


Q ss_pred             C
Q 030856          170 I  170 (170)
Q Consensus       170 i  170 (170)
                      +
T Consensus       161 ~  161 (164)
T smart00175      161 I  161 (164)
T ss_pred             H
Confidence            3

Rab GTPases are implicated in vesicle trafficking.

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=6.5e-37  Score=204.08  Aligned_cols=160  Identities=41%  Similarity=0.731  Sum_probs=145.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      +||+++|++|+|||||++++..+.+. ..+.++.+.++....+.+++..+.+.+|||||++.+......+++++|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            58999999999999999999998875 46677877777777777888889999999999999999899999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ||++++++++.+..|+..+......+.|+++|+||.|+...+.+..++++.++..++++++++||++|.|++++|.+|++
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998876668999999999999777777888899999999999999999999999999999986


Q ss_pred             h
Q 030856          169 L  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       161 ~  161 (191)
T cd04112         161 E  161 (191)
T ss_pred             H
Confidence            5

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=2e-36  Score=198.37  Aligned_cols=163  Identities=39%  Similarity=0.609  Sum_probs=146.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ...+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++++|+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            45699999999999999999999999888877888888877777888888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCCChHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKG  161 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~  161 (170)
                      +|||++++++++.+..|...+.....    .+.|+++|+||+|+. .+.+..++++++++.+++ +++++||++|.|+++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  161 (170)
T cd04116          83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA  161 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence            99999999999999999988766442    568999999999986 566778889999999885 899999999999999


Q ss_pred             HHHHHHhhC
Q 030856          162 CSPTIRRLI  170 (170)
Q Consensus       162 ~~~~l~~~i  170 (170)
                      +|+++++.+
T Consensus       162 ~~~~~~~~~  170 (170)
T cd04116         162 AFEEAVRRV  170 (170)
T ss_pred             HHHHHHhhC
Confidence            999999764

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=1.3e-36  Score=205.11  Aligned_cols=163  Identities=34%  Similarity=0.673  Sum_probs=149.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ...+||+++|++|+|||||++++....+...+.++.+.++....+.+++..+.+.+||++|.+.+..++..++.++|+++
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            45699999999999999999999999887777888888888878888888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      +|||++++++++.+..|+..+.....++.|+++|+||+|+...+.+..++.+++++.++++++++||+++.|++++|.++
T Consensus        84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l  163 (210)
T PLN03108         84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (210)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999988877666789999999999998877888899999999999999999999999999999999


Q ss_pred             Hhh
Q 030856          167 RRL  169 (170)
Q Consensus       167 ~~~  169 (170)
                      ++.
T Consensus       164 ~~~  166 (210)
T PLN03108        164 AAK  166 (210)
T ss_pred             HHH
Confidence            864

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=1e-36  Score=200.25  Aligned_cols=160  Identities=31%  Similarity=0.508  Sum_probs=140.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      .+||+++|.+|||||||+.++..+.+...+.++.. +........++..+.+.+|||+|++.+..++..++.++|++|+|
T Consensus         1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (174)
T cd01871           1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC   79 (174)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence            47999999999999999999999988888888876 44445566788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcCC-eEEEeecC
Q 030856           89 YDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAK  154 (170)
Q Consensus        89 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~  154 (170)
                      ||++++++|+.+. .|+..+.... ++.|+++|+||.|+.+.            +.+..++++.+++.++. ++++|||+
T Consensus        80 ~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  158 (174)
T cd01871          80 FSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  158 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence            9999999999995 6888776654 58999999999998542            35788999999999995 99999999


Q ss_pred             CCCChHHHHHHHHhhC
Q 030856          155 AGFNIKGCSPTIRRLI  170 (170)
Q Consensus       155 ~~~~v~~~~~~l~~~i  170 (170)
                      +|.|++++|+.+++.+
T Consensus       159 ~~~~i~~~f~~l~~~~  174 (174)
T cd01871         159 TQKGLKTVFDEAIRAV  174 (174)
T ss_pred             ccCCHHHHHHHHHHhC
Confidence            9999999999998754

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=1.6e-36  Score=198.62  Aligned_cols=159  Identities=35%  Similarity=0.611  Sum_probs=142.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEe
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   90 (170)
                      ||+++|.+|||||||++++..+.+...+.++.+.++........+..+.+.+||+||++.+..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999998999999988887777788888999999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcc--cCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856           91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR  167 (170)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (170)
                      ++++++++.+..|+..+..... .+.|+++|+||.|+.+.+.  ...+++..++++++++++++||++|.|++++|+.|+
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999998866543 4578999999999865443  345677788888899999999999999999999998


Q ss_pred             hh
Q 030856          168 RL  169 (170)
Q Consensus       168 ~~  169 (170)
                      +.
T Consensus       162 ~~  163 (170)
T cd04108         162 AL  163 (170)
T ss_pred             HH
Confidence            64

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=5e-37  Score=204.45  Aligned_cols=158  Identities=37%  Similarity=0.588  Sum_probs=140.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEe
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   90 (170)
                      ||+++|.+|+|||||++++..+.+...+.++.+..+ ......++..+.+.+|||||++.+..++..+++++|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            589999999999999999999888777777776443 3445577888899999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856           91 VASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR  167 (170)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (170)
                      ++++++|+.+..|+..+.....   .+.|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|++++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999988876542   5789999999999987778888888899999999999999999999999999998


Q ss_pred             hh
Q 030856          168 RL  169 (170)
Q Consensus       168 ~~  169 (170)
                      +.
T Consensus       160 ~~  161 (190)
T cd04144         160 RA  161 (190)
T ss_pred             HH
Confidence            75

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=1.7e-36  Score=198.75  Aligned_cols=162  Identities=36%  Similarity=0.613  Sum_probs=147.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh-hhhhhhhcCCcEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRDSSVAVV   87 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~i~   87 (170)
                      .++|+++|++|+|||||++++....++..+.++.+.++.......++..+.+.+||++|++.+. .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            5899999999999999999999998888888888888888888888888999999999999886 578888999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCC---CCChHHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA---GFNIKGCS  163 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~---~~~v~~~~  163 (170)
                      |||++++++++.+..|+..+.... ..++|+++|+||+|+...+++..+++++++...++++++|||++   +.+++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            999999999999999998887764 36799999999999988888888899999999999999999999   89999999


Q ss_pred             HHHHhhC
Q 030856          164 PTIRRLI  170 (170)
Q Consensus       164 ~~l~~~i  170 (170)
                      ..+++.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9998754

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=1.5e-36  Score=198.09  Aligned_cols=159  Identities=32%  Similarity=0.489  Sum_probs=139.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +||+++|.+|+|||||++++.++.+...+.++.+..+ ......++..+.+.+||+||++.+..+...++..+|++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7899999999999999999999988777777766333 444556677789999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           90 DVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~---~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      |++++++++.+..|+..+.....   ++.|+++|+||+|+...+.+..+++..++..+++.+++|||++|.|++++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            99999999999999887766532   579999999999997777788888888999999999999999999999999999


Q ss_pred             Hhh
Q 030856          167 RRL  169 (170)
Q Consensus       167 ~~~  169 (170)
                      ++.
T Consensus       161 ~~~  163 (165)
T cd04140         161 LNL  163 (165)
T ss_pred             Hhc
Confidence            863

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=3.6e-36  Score=195.88  Aligned_cols=162  Identities=46%  Similarity=0.797  Sum_probs=148.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      ++||+++|++|+|||||++++.++.+...+.++.+.++.......++....+.+||+||++.+...+..+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            47999999999999999999999998777788888777777778888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ||++++++++....|+..+.....++.|+++++||+|+...+....++...++...++.++++||++|.|++++|++|++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999998877678999999999998877777888889999999999999999999999999999988


Q ss_pred             hC
Q 030856          169 LI  170 (170)
Q Consensus       169 ~i  170 (170)
                      .|
T Consensus       161 ~l  162 (163)
T cd01860         161 KL  162 (163)
T ss_pred             Hh
Confidence            64

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.5e-36  Score=198.11  Aligned_cols=157  Identities=32%  Similarity=0.585  Sum_probs=139.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +||+++|++|||||||++++..+.+...+.++.+.+........++..+.+.+|||+|++.+..+...++..+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999988888788888888887777777788899999999999999988899999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      |++++++++.+..|+..+..... +.|+++|+||+|+.. +... .+..++++..+++++++||++|.|++++|++|++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  157 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence            99999999999999999988764 899999999999863 3333 34456777788899999999999999999999875

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=1.4e-36  Score=205.07  Aligned_cols=155  Identities=35%  Similarity=0.581  Sum_probs=136.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +||+++|.+|+|||||++++..+.+.. +.++.+.++.....    ..+.+.+||++|++.+..++..+++++|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999998864 46777665544332    4578999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC-------------------CcccCHHHHHHHHHhcC-----
Q 030856           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE-------------------KRQVSIEEGEAKSRELN-----  145 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~-----  145 (170)
                      |++++++|+.+..|+..+.....++.|+++|+||+|+.+                   .+.+..++++.++++.+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999999888888766557899999999999875                   67888999999999876     


Q ss_pred             ---------CeEEEeecCCCCChHHHHHHHHhh
Q 030856          146 ---------VMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       146 ---------~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                               ++|++|||++|.||+++|..+++.
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~  188 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNL  188 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHH
Confidence                     689999999999999999999875

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.3e-37  Score=193.01  Aligned_cols=163  Identities=39%  Similarity=0.703  Sum_probs=150.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEe-CCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ..+++.++|++-+|||+|++.+..+++..-..||.+.++....+.. ++..+++++|||+|++.+++..++|++++-+++
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl   86 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL   86 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence            4689999999999999999999999999988999999998877655 577899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC-CC-CeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERG-SD-VIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSP  164 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~-~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~  164 (170)
                      ++||++|+++|+.+..|+.+...+.. |. +.+.+|++|+|+..+|+++.++++++++.+|..|+++|+++|.|+++.|.
T Consensus        87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~  166 (213)
T KOG0091|consen   87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFD  166 (213)
T ss_pred             EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHH
Confidence            99999999999999999999888765 44 44689999999999999999999999999999999999999999999999


Q ss_pred             HHHhhC
Q 030856          165 TIRRLI  170 (170)
Q Consensus       165 ~l~~~i  170 (170)
                      .|.+.|
T Consensus       167 mlaqeI  172 (213)
T KOG0091|consen  167 MLAQEI  172 (213)
T ss_pred             HHHHHH
Confidence            998753

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=3.5e-36  Score=196.08  Aligned_cols=161  Identities=34%  Similarity=0.556  Sum_probs=141.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      .+||+++|++|+|||||++++.+..+...+.++.+..+ ......++..+.+.+|||||++++..++..+++++|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            58999999999999999999999887767667766333 44456777788999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856           89 YDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR  167 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (170)
                      ||++++++++.+..|+..+.+.. ..+.|+++++||+|+..++.+..+++.++++..+++++++||++|.|++++|++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999998887653 35799999999999987777777888899999899999999999999999999998


Q ss_pred             hhC
Q 030856          168 RLI  170 (170)
Q Consensus       168 ~~i  170 (170)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            753

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=2.3e-36  Score=197.02  Aligned_cols=160  Identities=38%  Similarity=0.575  Sum_probs=140.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +||+++|++|||||||++++.++.+...+.++.+ +........++..+.+.+||+||++++..++..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            4899999999999999999999888777777665 344455667778889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856           90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      |++++++++.+..|...+..... .+.|+++|+||+|+...+....+++..+++..+++++++||++|.|++++|++|++
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            99999999999999888766543 57899999999999877777788888899999999999999999999999999987


Q ss_pred             hC
Q 030856          169 LI  170 (170)
Q Consensus       169 ~i  170 (170)
                      .+
T Consensus       160 ~~  161 (164)
T smart00173      160 EI  161 (164)
T ss_pred             HH
Confidence            53

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=4.5e-36  Score=195.07  Aligned_cols=160  Identities=32%  Similarity=0.536  Sum_probs=140.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      ++||+++|++|+|||||++++.++.+...+.++.+.. .......++..+.+.+||++|++.+..++..++.++|++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            3789999999999999999999988877777777643 345566777788899999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856           89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR  167 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (170)
                      ||++++.+++.+..|+..+.+... .+.|+++|+||+|+.. +.....++..+++..+++++++||++|.|++++|++++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (162)
T cd04138          80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV  158 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999888877643 5799999999999865 45667788888888899999999999999999999998


Q ss_pred             hhC
Q 030856          168 RLI  170 (170)
Q Consensus       168 ~~i  170 (170)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04138         159 REI  161 (162)
T ss_pred             HHh
Confidence            754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=4.2e-36  Score=202.88  Aligned_cols=158  Identities=22%  Similarity=0.471  Sum_probs=138.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      ++||+++|++|+|||||++++..+.++..+.|+.+.++. ..+.+++..+.+.+|||+|++.|..+...+++++|++|+|
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv   79 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC   79 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence            479999999999999999999999998889999876554 5667888899999999999999999999999999999999


Q ss_pred             EeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcCC-eEEEeecC
Q 030856           89 YDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAK  154 (170)
Q Consensus        89 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~  154 (170)
                      ||++++++|+.+ ..|...+... .++.|+++|+||+|+...            ..+..++++.+++..++ +|++|||+
T Consensus        80 fdis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk  158 (222)
T cd04173          80 FDISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR  158 (222)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence            999999999999 4576665443 478999999999998542            13678899999999996 99999999


Q ss_pred             CCCC-hHHHHHHHHh
Q 030856          155 AGFN-IKGCSPTIRR  168 (170)
Q Consensus       155 ~~~~-v~~~~~~l~~  168 (170)
                      ++.+ ++++|..+..
T Consensus       159 ~~~~~V~~~F~~~~~  173 (222)
T cd04173         159 SSERSVRDVFHVATV  173 (222)
T ss_pred             cCCcCHHHHHHHHHH
Confidence            9985 9999998875

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=1.3e-35  Score=193.42  Aligned_cols=159  Identities=35%  Similarity=0.576  Sum_probs=141.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC--CCCCCccceeeeeeeEEEEEeC-CeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      +||+++|++|||||||++++.+.  .++.++.++.+.++.......+ +..+.+.+||+||++.+..++..++..+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999864  5677888888888776666554 56789999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      +|||++++++++.+..|+..+.... .+.|+++|+||+|+.+.+++...+++.++...+++++++||+++.|++++|+.|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL  159 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence            9999999999999999999887764 579999999999998777777777788888888999999999999999999999


Q ss_pred             Hhh
Q 030856          167 RRL  169 (170)
Q Consensus       167 ~~~  169 (170)
                      ++.
T Consensus       160 ~~~  162 (164)
T cd04101         160 ARA  162 (164)
T ss_pred             HHH
Confidence            875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=5.3e-36  Score=199.33  Aligned_cols=158  Identities=34%  Similarity=0.563  Sum_probs=136.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      .||+++|++|+|||||++++.++.++..+.++.+..+. ..+..++..+.+.+||++|++.+..++..++.++|++++||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            38999999999999999999999988888888775543 34556777889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCc------------ccCHHHHHHHHHhcC-CeEEEeecCC
Q 030856           90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSRELN-VMFIETSAKA  155 (170)
Q Consensus        90 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~S~~~  155 (170)
                      |++++++|+.+. .|+..+.... ++.|+++|+||+|+.+.+            .+..+++..+++..+ +++++|||++
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  158 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL  158 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            999999999986 6888887654 589999999999986543            345677888888877 6999999999


Q ss_pred             CCChHHHHHHHHhh
Q 030856          156 GFNIKGCSPTIRRL  169 (170)
Q Consensus       156 ~~~v~~~~~~l~~~  169 (170)
                      |.|++++|.+|++.
T Consensus       159 ~~~v~e~f~~l~~~  172 (189)
T cd04134         159 NRGVNEAFTEAARV  172 (189)
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999999999864

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=6.8e-36  Score=199.63  Aligned_cols=160  Identities=24%  Similarity=0.321  Sum_probs=135.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh--------hhhhhhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIRD   81 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~   81 (170)
                      +||+++|.+|||||||++++.++.++..+.|+.+.++....+..++..+.+.+|||||...+..        .....+..
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999988888888887676666667788889999999999654321        23345789


Q ss_pred             CcEEEEEEeCCChhhHHhHHHHHHHHHHhc---CCCCeEEEEEeCCCCCCCcccCHHHHHHHHH-hcCCeEEEeecCCCC
Q 030856           82 SSVAVVVYDVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-ELNVMFIETSAKAGF  157 (170)
Q Consensus        82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~  157 (170)
                      +|++|+|||++++++|+.+..|+..+....   .+++|+++|+||+|+...+.+..++++.++. ..+++|++|||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999998887654   3679999999999997777777777777765 568999999999999


Q ss_pred             ChHHHHHHHHhh
Q 030856          158 NIKGCSPTIRRL  169 (170)
Q Consensus       158 ~v~~~~~~l~~~  169 (170)
                      |++++|+.+++.
T Consensus       161 ~v~~lf~~i~~~  172 (198)
T cd04142         161 HILLLFKELLIS  172 (198)
T ss_pred             CHHHHHHHHHHH
Confidence            999999999864

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=2.5e-35  Score=191.51  Aligned_cols=161  Identities=38%  Similarity=0.679  Sum_probs=143.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +||+++|++|+|||||++++.++.+...+.++.+.+.........+....+.+||+||++.+..++..+++++|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999998887666667666666666667777789999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      |++++++++.+..|+..+......+.|+++|+||+|+...+.+..++..++++..+++++++|++++.|+++++++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999888776689999999999998777777788888899999999999999999999999999875


Q ss_pred             C
Q 030856          170 I  170 (170)
Q Consensus       170 i  170 (170)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            4

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=1.5e-35  Score=192.63  Aligned_cols=156  Identities=29%  Similarity=0.533  Sum_probs=136.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +||+++|.+|+|||||++++..+.+...+.++.+.+........++..+.+.+|||+|++.+..++..+++++|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999887777777776666666777888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      |++++.+++.+..|+..+.... ++.|+++|+||+|+...   ..++...++...+++++++||++|.|++++|+.+.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL  156 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999999999987653 57999999999998432   1344566777788999999999999999999999864

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.3e-35  Score=198.04  Aligned_cols=152  Identities=29%  Similarity=0.547  Sum_probs=136.7

Q ss_pred             EcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCCh
Q 030856           15 LGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR   94 (170)
Q Consensus        15 ~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   94 (170)
                      +|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999888888889998888888888888889999999999999999999999999999999999999


Q ss_pred             hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856           95 QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      .+|+.+..|+..+.+.. +++|+++|+||+|+.. +.+..+. ..+++..++.|++|||++|.|++++|++|++.
T Consensus        81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~  152 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARK  152 (200)
T ss_pred             HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999998765 6899999999999854 4444444 46788889999999999999999999999874

Ran is involved in the active transport of proteins through nuclear pores.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=1.6e-35  Score=194.73  Aligned_cols=156  Identities=33%  Similarity=0.540  Sum_probs=136.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeC
Q 030856           12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDV   91 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   91 (170)
                      |+++|++|||||||++++.++.+...+.++....+ ......++..+.+.+|||||++.+..++..++.++|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            58999999999999999999998887777776443 44566778888999999999999999999999999999999999


Q ss_pred             CChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcCC-eEEEeecCCCC
Q 030856           92 ASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAKAGF  157 (170)
Q Consensus        92 ~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~~~~  157 (170)
                      +++++|+.+. .|+..+.... ++.|+++|+||+|+...            +.+..++++.+++..++ .+++|||++|.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999985 5888887654 68999999999998653            33778888999999997 99999999999


Q ss_pred             ChHHHHHHHHhh
Q 030856          158 NIKGCSPTIRRL  169 (170)
Q Consensus       158 ~v~~~~~~l~~~  169 (170)
                      |++++|+.+.+.
T Consensus       159 ~v~~lf~~l~~~  170 (174)
T smart00174      159 GVREVFEEAIRA  170 (174)
T ss_pred             CHHHHHHHHHHH
Confidence            999999999875

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=2.4e-35  Score=196.06  Aligned_cols=158  Identities=31%  Similarity=0.468  Sum_probs=137.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeC-CeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      +||+++|++|+|||||++++.++.++..+.++.+.++... +... +..+.+.+|||||++.+..++..++.++|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            5899999999999999999999999888888877665443 4443 6778999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC----cccCHHHHHHHHHhcCC-eEEEeecCCCCChHHH
Q 030856           89 YDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK----RQVSIEEGEAKSRELNV-MFIETSAKAGFNIKGC  162 (170)
Q Consensus        89 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~  162 (170)
                      ||++++++|+.+. .|+..+... .++.|+++|+||.|+...    +.+..+++++++...++ ++++|||++|.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            9999999999985 587777654 367999999999998653    35678889999999998 9999999999999999


Q ss_pred             HHHHHhh
Q 030856          163 SPTIRRL  169 (170)
Q Consensus       163 ~~~l~~~  169 (170)
                      |+.+++.
T Consensus       159 f~~l~~~  165 (187)
T cd04132         159 FDTAIEE  165 (187)
T ss_pred             HHHHHHH
Confidence            9999864

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=6.4e-35  Score=189.62  Aligned_cols=160  Identities=43%  Similarity=0.718  Sum_probs=142.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +||+++|++|+|||||++++.+..+...+.++.+.++....+...+..+.+.+||+||++.+......+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999998887777788877777666667777889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856           90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      |++++++++.+..|+..+..... .+.|+++|+||+|+. .+....++...++...+++++++|+++|.|++++++.+.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            99999999999999998887754 689999999999986 4456678888999999999999999999999999999987


Q ss_pred             hC
Q 030856          169 LI  170 (170)
Q Consensus       169 ~i  170 (170)
                      .+
T Consensus       160 ~~  161 (161)
T cd01863         160 KI  161 (161)
T ss_pred             hC
Confidence            64

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=2.4e-35  Score=196.34  Aligned_cols=158  Identities=30%  Similarity=0.376  Sum_probs=130.0

Q ss_pred             ceeEEEEcCCCCCHHHHHH-HHhcCC-----CCCCccceeee-eeeEEE--------EEeCCeEEEEEEEecCChhhhhh
Q 030856            9 KYKLVFLGDQSVGKTSIIT-RFMYDK-----FDNTYQATIGI-DFLSKT--------MYLEDRTVRLQLWDTAGQERFRS   73 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~   73 (170)
                      .+||+++|.+|||||||+. ++..+.     +...+.||.+. +.....        ..+++..+.+.+|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999995 555432     34566777742 222211        24678889999999999875  3


Q ss_pred             hhhhhhcCCcEEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCC-------------------CcccC
Q 030856           74 LIPSYIRDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE-------------------KRQVS  133 (170)
Q Consensus        74 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~-------------------~~~~~  133 (170)
                      +...+++++|++|+|||++++++|+.+. .|+..+.... ++.|+++|+||+|+..                   .+.+.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            4566889999999999999999999996 5988887664 5789999999999863                   47788


Q ss_pred             HHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          134 IEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      .+++++++++.+++|++|||++|.|++++|+.+++.
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            999999999999999999999999999999999875

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04114 Rab30 Rab30 subfamily

Probab=100.00  E-value=1.3e-34  Score=189.66  Aligned_cols=164  Identities=37%  Similarity=0.632  Sum_probs=146.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ...++|+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||+||++.+......++..+|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            34599999999999999999999988877777788877777777888888889999999999999998899999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      +|||++++++++.+..|+..+......+.|+++|+||+|+...+++..+..+.+.+....++++||+++|.|++++|++|
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i  164 (169)
T cd04114          85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL  164 (169)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999999998877766679999999999998777777777788888888999999999999999999999


Q ss_pred             HhhC
Q 030856          167 RRLI  170 (170)
Q Consensus       167 ~~~i  170 (170)
                      .+.+
T Consensus       165 ~~~~  168 (169)
T cd04114         165 ACRL  168 (169)
T ss_pred             HHHh
Confidence            8753

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=5.6e-35  Score=195.17  Aligned_cols=159  Identities=36%  Similarity=0.620  Sum_probs=140.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCC-CccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      +||+++|++|+|||||++++.++.+.. .+.++.+.++....+..++..+.+.+||++|++.+..++..++.++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999988864 6778888777777788888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC----cccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 030856           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK----RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSP  164 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~  164 (170)
                      ||++++++++.+..|+..+.... ++.|+++|+||+|+.+.    +.+..++++.++...+++++++||+++.|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999998887653 57999999999998532    34556778888888899999999999999999999


Q ss_pred             HHHhh
Q 030856          165 TIRRL  169 (170)
Q Consensus       165 ~l~~~  169 (170)
                      +|.+.
T Consensus       160 ~i~~~  164 (193)
T cd04118         160 KVAED  164 (193)
T ss_pred             HHHHH
Confidence            99864

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=3.8e-35  Score=189.81  Aligned_cols=154  Identities=17%  Similarity=0.325  Sum_probs=130.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +||+++|++|+|||||+.++..+.+...+.++. ..+ ...+.+++..+.+.+||++|++.     ..++.++|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            589999999999999999999887766554443 233 35567788888999999999864     34678899999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCC--CCcccCHHHHHHHHHhc-CCeEEEeecCCCCChHHHHHH
Q 030856           90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLV--EKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      |++++++|+.+..|+..+..... ++.|+++|+||.|+.  ..+.+..++++++++.. ++.|++|||++|.|++++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999987754 678999999999985  35778888889999876 489999999999999999999


Q ss_pred             HHhhC
Q 030856          166 IRRLI  170 (170)
Q Consensus       166 l~~~i  170 (170)
                      +++.+
T Consensus       154 ~~~~~  158 (158)
T cd04103         154 AAQKI  158 (158)
T ss_pred             HHhhC
Confidence            98764

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=4.6e-37  Score=189.67  Aligned_cols=164  Identities=39%  Similarity=0.655  Sum_probs=156.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ..-++|++++|...+|||||+-++...++......+....+..+.+.+.+....+.||||+|++.|-.+-..|++++++.
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa   89 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA   89 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence            34579999999999999999999999999988888888888899998999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      ++|||++|+++|+.++.|..+++...+..+-+++|+||+|+.+++.++.++++.+++..|..++++||+++.|+.++|+.
T Consensus        90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~  169 (218)
T KOG0088|consen   90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFES  169 (218)
T ss_pred             EEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHH
Confidence            99999999999999999999999999888999999999999999999999999999999999999999999999999999


Q ss_pred             HHhh
Q 030856          166 IRRL  169 (170)
Q Consensus       166 l~~~  169 (170)
                      |.++
T Consensus       170 Lt~~  173 (218)
T KOG0088|consen  170 LTAK  173 (218)
T ss_pred             HHHH
Confidence            8764

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=1e-34  Score=196.25  Aligned_cols=163  Identities=38%  Similarity=0.646  Sum_probs=141.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ....+||+++|.+|+|||||++++.+..+ ..+.++.+.++....+..++..+.+.+|||||++.+..++..+++++|++
T Consensus        11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~   89 (211)
T PLN03118         11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI   89 (211)
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            34579999999999999999999998876 35667777777777777788888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHH-HHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 030856           86 VVVYDVASRQSFLNTSK-WIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCS  163 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~-~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (170)
                      ++|||++++++|+.+.. |...+.... ..+.|+++|+||+|+...+.+..++...++..++++++++||+++.|++++|
T Consensus        90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~  169 (211)
T PLN03118         90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCF  169 (211)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999975 555554433 2568999999999998777788888889999999999999999999999999


Q ss_pred             HHHHhh
Q 030856          164 PTIRRL  169 (170)
Q Consensus       164 ~~l~~~  169 (170)
                      ++|.+.
T Consensus       170 ~~l~~~  175 (211)
T PLN03118        170 EELALK  175 (211)
T ss_pred             HHHHHH
Confidence            999865

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=5.5e-35  Score=200.79  Aligned_cols=159  Identities=28%  Similarity=0.454  Sum_probs=139.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +||+++|.+|+|||||++++.++.+...+.++.+ ++....+.+++..+.+.||||+|.+.+..+...++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            4899999999999999999999988877778776 556667778888899999999999999888888899999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHh---------cCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHh-cCCeEEEeecCCCCCh
Q 030856           90 DVASRQSFLNTSKWIDEVRTE---------RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNI  159 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~---------~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~v  159 (170)
                      |++++++|+.+..|+..+...         ...+.|+++|+||+|+...+++..+++.+++.. .++.++++||++|.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999998888654         225799999999999987677888888877764 4679999999999999


Q ss_pred             HHHHHHHHhh
Q 030856          160 KGCSPTIRRL  169 (170)
Q Consensus       160 ~~~~~~l~~~  169 (170)
                      +++|++|++.
T Consensus       160 ~elf~~L~~~  169 (247)
T cd04143         160 DEMFRALFSL  169 (247)
T ss_pred             HHHHHHHHHH
Confidence            9999999864

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=9.4e-35  Score=190.12  Aligned_cols=160  Identities=34%  Similarity=0.509  Sum_probs=141.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      .+||+++|.+|+|||||++++.++.+...+.++.+.. .......++..+.+.+||+||++.+..++..+++.++++++|
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv   79 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV   79 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence            3789999999999999999999988877777777643 345566778888999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC-CeEEEeecCCCCChHHHHHHH
Q 030856           89 YDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      ||++++++++.+..|...+.... ..+.|+++++||.|+...+....++...+++..+ ++++++||+++.|++++|+++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i  159 (168)
T cd04177          80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL  159 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999988887643 3579999999999998777778888888888888 799999999999999999999


Q ss_pred             Hhh
Q 030856          167 RRL  169 (170)
Q Consensus       167 ~~~  169 (170)
                      ++.
T Consensus       160 ~~~  162 (168)
T cd04177         160 VRQ  162 (168)
T ss_pred             HHH
Confidence            865

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=1.7e-34  Score=189.43  Aligned_cols=160  Identities=43%  Similarity=0.696  Sum_probs=141.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +||+++|++|+|||||++++.+..+...+.++.+.++........+..+.+.+||+||++.+..++..+++++|++|++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999887777788887777777778888889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC-CeEEEeecCCCCChHHHHH
Q 030856           90 DVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFNIKGCSP  164 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~----~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~~~  164 (170)
                      |++++++++....|...+.....    .+.|+++|+||+|+..++....++.+.+++..+ ++++++|+++|.|++++++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            99999999999888887655543    379999999999997666677788888888887 7999999999999999999


Q ss_pred             HHHhh
Q 030856          165 TIRRL  169 (170)
Q Consensus       165 ~l~~~  169 (170)
                      ++.+.
T Consensus       161 ~i~~~  165 (172)
T cd01862         161 TIARK  165 (172)
T ss_pred             HHHHH
Confidence            99864

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=100.00  E-value=4.1e-35  Score=191.27  Aligned_cols=159  Identities=31%  Similarity=0.525  Sum_probs=135.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh-hhhhhhhhhcCCcEEEEEE
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d~~i~v~   89 (170)
                      ||+++|++|+|||||++++..+.+...+.++....+ .....+++..+.+.+||+||+.. .......+++.+|++|+||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            689999999999999999998877666666664333 44556778888999999999885 3445677889999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhc--CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCC-ChHHHHHHH
Q 030856           90 DVASRQSFLNTSKWIDEVRTER--GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF-NIKGCSPTI  166 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~--~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-~v~~~~~~l  166 (170)
                      |++++++|+.+..|+..+....  ..+.|+++|+||+|+...+.+..++++.+++..+++++++||+++. |++++|+.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999999999988887654  3579999999999997777888888999999999999999999994 999999999


Q ss_pred             HhhC
Q 030856          167 RRLI  170 (170)
Q Consensus       167 ~~~i  170 (170)
                      ++.+
T Consensus       160 ~~~~  163 (165)
T cd04146         160 CREV  163 (165)
T ss_pred             HHHH
Confidence            8753

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd00154 Rab Rab family

Probab=100.00  E-value=2.9e-34  Score=185.67  Aligned_cols=159  Identities=48%  Similarity=0.830  Sum_probs=146.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +||+++|++|+|||||++++.+......+.++.+.+........++....+.+||+||...+......+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888888888888888888889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      |++++++++.+..|+..+......+.|+++++||+|+........++.+.++...+++++++|++++.|+++++++|.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  159 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE  159 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence            9999999999999999988876678999999999999756677788999999999999999999999999999999864

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=100.00  E-value=1.5e-34  Score=190.03  Aligned_cols=157  Identities=35%  Similarity=0.519  Sum_probs=136.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +|++++|++|+|||||++++.++.+...+.++.. +........++..+.+.+||+||++.+..++..+++++|++++||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            5899999999999999999999888877777763 555556777788889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCC------------CcccCHHHHHHHHHhcCC-eEEEeecCC
Q 030856           90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIETSAKA  155 (170)
Q Consensus        90 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S~~~  155 (170)
                      |++++++|+.+. .|+..+.... ++.|+++++||.|+..            ++.+..++++.+++..++ .+++|||++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999984 6887777543 5799999999999863            456778889999999998 999999999


Q ss_pred             CCChHHHHHHHHh
Q 030856          156 GFNIKGCSPTIRR  168 (170)
Q Consensus       156 ~~~v~~~~~~l~~  168 (170)
                      |.|++++|+.++-
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999998763

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=7.3e-35  Score=190.65  Aligned_cols=161  Identities=20%  Similarity=0.236  Sum_probs=139.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      .+.+||+++|.+|+|||||++++.++.+. ..+.++.+.++....+..++..+.+.+||++|.+.+..+...++.++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            35689999999999999999999999988 88889988777767777788888899999999999988999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCCChHHHHH
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKGCSP  164 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~  164 (170)
                      ++|||++++++++.+..|+..+...  .+.|+++|+||+|+.+.+.....+.+++++.+++ .++++||+++.|++++|+
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~  159 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT  159 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence            9999999999999998888765332  4799999999999876555444556778888887 579999999999999999


Q ss_pred             HHHhh
Q 030856          165 TIRRL  169 (170)
Q Consensus       165 ~l~~~  169 (170)
                      .|++.
T Consensus       160 ~l~~~  164 (169)
T cd01892         160 KLATA  164 (169)
T ss_pred             HHHHH
Confidence            99875

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04135 Tc10 TC10 subfamily

Probab=100.00  E-value=1.8e-34  Score=189.80  Aligned_cols=159  Identities=28%  Similarity=0.477  Sum_probs=137.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +||+++|++|+|||||++++..+.+...+.++.. +.....+..++..+.+.+||+||++.+...+..++.++|++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999988777777665 334445667788889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcCC-eEEEeecCC
Q 030856           90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAKA  155 (170)
Q Consensus        90 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~~  155 (170)
                      |++++++|+.+. .|+..+... .++.|+++|+||+|+.+.            +.+..++++.+++..++ ++++|||++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999985 677777655 578999999999998543            35778889999999997 899999999


Q ss_pred             CCChHHHHHHHHhhC
Q 030856          156 GFNIKGCSPTIRRLI  170 (170)
Q Consensus       156 ~~~v~~~~~~l~~~i  170 (170)
                      |.|++++|+.+++.+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998754

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04148 RGK RGK subfamily

Probab=100.00  E-value=1.9e-34  Score=195.85  Aligned_cols=158  Identities=34%  Similarity=0.472  Sum_probs=136.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhc-CCcEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR-DSSVAVV   87 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~d~~i~   87 (170)
                      +||+++|++|+|||||++++..+.+. ..+.++.+.++....+.+++....+.+||++|++.  .....++. ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999888776 56666665566777777888889999999999882  33445566 8999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      |||++++++|+.+..|+..+..... .+.|+++|+||+|+...+.+..++++.++...+++++++||+++.|++++|++|
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999988877543 579999999999998878888888889999999999999999999999999999


Q ss_pred             Hhh
Q 030856          167 RRL  169 (170)
Q Consensus       167 ~~~  169 (170)
                      ++.
T Consensus       159 ~~~  161 (221)
T cd04148         159 VRQ  161 (221)
T ss_pred             HHH
Confidence            875

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=5.8e-37  Score=184.30  Aligned_cols=157  Identities=39%  Similarity=0.707  Sum_probs=148.4

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeC
Q 030856           13 VFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDV   91 (170)
Q Consensus        13 ~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   91 (170)
                      +++|++++|||+|+-++..+.+- .+..++.++++..+.+..++..+++++|||+|++++++....|++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            36899999999999988877664 67889999999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856           92 ASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      .|..||++.+.|+.++..+....+.+++++||+|+..++.+..++.+++++.+++||+++|+++|.|++..|-.|++.
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~  158 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEE  158 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHH
Confidence            999999999999999999888889999999999999999999999999999999999999999999999999988864

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-34  Score=175.58  Aligned_cols=165  Identities=34%  Similarity=0.631  Sum_probs=155.1

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   84 (170)
                      +-..-+|-.++|+-|+|||+|+..+...++......+.++++....+.+.+..++++||||+|+++++...++|++++-+
T Consensus         7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag   86 (215)
T KOG0097|consen    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   86 (215)
T ss_pred             chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence            34456899999999999999999999999998888999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 030856           85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSP  164 (170)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~  164 (170)
                      .++|||++.+.++..+..|+...+....++..+++++||.|+..++.+..+++++++.++|+.|+++|+++|.++++.|-
T Consensus        87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl  166 (215)
T KOG0097|consen   87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL  166 (215)
T ss_pred             eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence            99999999999999999999999888889999999999999999999999999999999999999999999999999887


Q ss_pred             HHHhh
Q 030856          165 TIRRL  169 (170)
Q Consensus       165 ~l~~~  169 (170)
                      ..++.
T Consensus       167 e~akk  171 (215)
T KOG0097|consen  167 ETAKK  171 (215)
T ss_pred             HHHHH
Confidence            66554

>cd00876 Ras Ras family

Probab=100.00  E-value=1.4e-33  Score=182.91  Aligned_cols=159  Identities=40%  Similarity=0.581  Sum_probs=141.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEe
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   90 (170)
                      ||+++|++|+|||||++++.+......+.++.. +........++..+.+.+||+||...+......+++.+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998887777777666 5555666677777899999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856           91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      ++++++++.+..|+..+..... ...|+++|+||+|+...+....+++..++...+++++++|++++.|+++++++|.+.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999999888877664 689999999999998767778889999999999999999999999999999999986


Q ss_pred             C
Q 030856          170 I  170 (170)
Q Consensus       170 i  170 (170)
                      +
T Consensus       160 i  160 (160)
T cd00876         160 I  160 (160)
T ss_pred             C
Confidence            5

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=100.00  E-value=1.4e-33  Score=183.71  Aligned_cols=159  Identities=33%  Similarity=0.542  Sum_probs=139.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +||+++|++|+|||||++++....+...+.++... ........++..+.+.+||+||+..+......+++++++++++|
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchh-hEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            48999999999999999999998887776666653 33455567778889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856           90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      |++++.+++.+..|+..+..... .+.|+++|+||+|+...+....++...++..++++++++|++++.|++++|+++.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            99999999999999888877643 57999999999999765666777788888888999999999999999999999987


Q ss_pred             h
Q 030856          169 L  169 (170)
Q Consensus       169 ~  169 (170)
                      +
T Consensus       160 ~  160 (164)
T cd04139         160 E  160 (164)
T ss_pred             H
Confidence            5

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.9e-36  Score=184.12  Aligned_cols=162  Identities=38%  Similarity=0.639  Sum_probs=148.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeC---------CeEEEEEEEecCChhhhhhhhhhh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE---------DRTVRLQLWDTAGQERFRSLIPSY   78 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~g~~~~~~~~~~~   78 (170)
                      .-++.+.+|++|+||||++.++..+++......+.++++.++.+.++         +..+.+++|||+|+++++++...+
T Consensus         8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF   87 (219)
T KOG0081|consen    8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF   87 (219)
T ss_pred             HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999999887653         235778999999999999999999


Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCC
Q 030856           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF  157 (170)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  157 (170)
                      ++.+-+++++||+++..+|-+++.|+.++..+. +++.-+++++||+|+.+.+.++.+++.++|+++++||+++||-+|.
T Consensus        88 fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~  167 (219)
T KOG0081|consen   88 FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGT  167 (219)
T ss_pred             HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCc
Confidence            999999999999999999999999999998764 3677799999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHhh
Q 030856          158 NIKGCSPTIRRL  169 (170)
Q Consensus       158 ~v~~~~~~l~~~  169 (170)
                      |+++..+.|..+
T Consensus       168 Nv~kave~Lldl  179 (219)
T KOG0081|consen  168 NVEKAVELLLDL  179 (219)
T ss_pred             CHHHHHHHHHHH
Confidence            999988887764

>cd04149 Arf6 Arf6 subfamily

Probab=100.00  E-value=2.4e-33  Score=183.26  Aligned_cols=155  Identities=21%  Similarity=0.327  Sum_probs=125.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .+.++|+++|++|+|||||++++..+.+. .+.|+.+.+...  ..  ...+.+.+||+||++.+..++..++.++|++|
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii   81 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET--VT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   81 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEE--EE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            45799999999999999999999877654 356776655432  22  24578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHh-----cCCeEEEeecCCCCChH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-----LNVMFIETSAKAGFNIK  160 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~v~  160 (170)
                      +|||++++.+++.+..|+..+.... .++.|+++|+||+|+..  .+..++++..+..     ..+.++++||++|.|++
T Consensus        82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~  159 (168)
T cd04149          82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  159 (168)
T ss_pred             EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence            9999999999999988877765432 25789999999999854  2455666665432     23478999999999999


Q ss_pred             HHHHHHHh
Q 030856          161 GCSPTIRR  168 (170)
Q Consensus       161 ~~~~~l~~  168 (170)
                      ++|++|.+
T Consensus       160 ~~~~~l~~  167 (168)
T cd04149         160 EGLTWLSS  167 (168)
T ss_pred             HHHHHHhc
Confidence            99999975

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=1.6e-33  Score=186.70  Aligned_cols=161  Identities=37%  Similarity=0.588  Sum_probs=151.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      +.+||+++|.+|+|||+|..++.+..+...|.|+.+ +.+.+...+++..+.+.|+||+|++++..+...++.+.|++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            568999999999999999999999999999999998 8888888899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      ||+++++.||+.+..++..+.+..+ ..+|+++|+||+|+...+.+..++++.++..++|+|+++||+.+.+++++|..|
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            9999999999999999999955444 668999999999999989999999999999999999999999999999999998


Q ss_pred             Hhh
Q 030856          167 RRL  169 (170)
Q Consensus       167 ~~~  169 (170)
                      .+.
T Consensus       161 ~r~  163 (196)
T KOG0395|consen  161 VRE  163 (196)
T ss_pred             HHH
Confidence            864

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=100.00  E-value=3.8e-34  Score=186.43  Aligned_cols=152  Identities=20%  Similarity=0.259  Sum_probs=128.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeC
Q 030856           12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDV   91 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   91 (170)
                      |+++|++|+|||||++++.+..+...+.|+.+.+.    ..+++..+.+.+||+||++.++.++..+++++|++++|||.
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            78999999999999999999887777788877543    22344567899999999999999999999999999999999


Q ss_pred             CChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCH----HHHHHHHHhcCCeEEEeecCC------CCChHH
Q 030856           92 ASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI----EEGEAKSRELNVMFIETSAKA------GFNIKG  161 (170)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~S~~~------~~~v~~  161 (170)
                      +++.++...+.|+..+.... +++|+++|+||.|+...+.+..    ..+..++++.++.+++|||++      ++|+++
T Consensus        78 t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~  156 (164)
T cd04162          78 ADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKD  156 (164)
T ss_pred             CCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHH
Confidence            99999999999988886543 6899999999999876654432    235666777788999999998      999999


Q ss_pred             HHHHHHh
Q 030856          162 CSPTIRR  168 (170)
Q Consensus       162 ~~~~l~~  168 (170)
                      +|+.++.
T Consensus       157 ~~~~~~~  163 (164)
T cd04162         157 LLSQLIN  163 (164)
T ss_pred             HHHHHhc
Confidence            9998875

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd01870 RhoA_like RhoA-like subfamily

Probab=100.00  E-value=1e-32  Score=181.52  Aligned_cols=159  Identities=33%  Similarity=0.536  Sum_probs=134.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      +.||+++|++|||||||++++.++.++..+.++....+. ..+..++..+.+.+|||+|++.+...+..++.++|++++|
T Consensus         1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   79 (175)
T cd01870           1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   79 (175)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence            368999999999999999999999888777787764443 3556777888999999999999988888889999999999


Q ss_pred             EeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcCC-eEEEeecC
Q 030856           89 YDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAK  154 (170)
Q Consensus        89 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~  154 (170)
                      ||++++++++.+. .|+..+.... ++.|+++|+||.|+...            ..+...+++++++..+. ++++|||+
T Consensus        80 ~~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  158 (175)
T cd01870          80 FSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK  158 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence            9999999999885 5777776543 57999999999998542            33456778888888875 89999999


Q ss_pred             CCCChHHHHHHHHhh
Q 030856          155 AGFNIKGCSPTIRRL  169 (170)
Q Consensus       155 ~~~~v~~~~~~l~~~  169 (170)
                      +|.|++++|++|.+.
T Consensus       159 ~~~~v~~lf~~l~~~  173 (175)
T cd01870         159 TKEGVREVFEMATRA  173 (175)
T ss_pred             cCcCHHHHHHHHHHH
Confidence            999999999999864

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=100.00  E-value=1.3e-33  Score=185.74  Aligned_cols=156  Identities=22%  Similarity=0.324  Sum_probs=123.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .+++||+++|.+|+|||||++++..+.+. .+.|+.+.+.....  .  ..+.+.+||+||++.+..++..+++++|++|
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~--~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii   85 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVT--Y--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI   85 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEE--E--CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence            45799999999999999999999876663 45677776554322  2  3478999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHH-----HhcCCeEEEeecCCCCChH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~  160 (170)
                      +|||++++++++....|+..+.... .++.|+++|+||.|+.+..  ..++.....     +...+.++++||++|.|++
T Consensus        86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (175)
T smart00177       86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY  163 (175)
T ss_pred             EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence            9999999999999988888775432 3579999999999986432  222222221     2233467899999999999


Q ss_pred             HHHHHHHhh
Q 030856          161 GCSPTIRRL  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      ++|+||.+.
T Consensus       164 e~~~~l~~~  172 (175)
T smart00177      164 EGLTWLSNN  172 (175)
T ss_pred             HHHHHHHHH
Confidence            999999875

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=2.7e-32  Score=184.99  Aligned_cols=167  Identities=30%  Similarity=0.568  Sum_probs=146.4

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhc
Q 030856            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (170)
Q Consensus         1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   80 (170)
                      |+.+.+...+||+++|++|||||||++++..+.+...+.++.+.++.......++..+.+.+||++|++.+...+..++.
T Consensus         1 ~~~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~   80 (215)
T PTZ00132          1 MQQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYI   80 (215)
T ss_pred             CccccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhc
Confidence            66778888999999999999999999999888888888899998888888777888899999999999999989999999


Q ss_pred             CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 030856           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~  160 (170)
                      .++++++|||++++.++..+..|+..+.... .+.|+++++||+|+.+ +....+ ...+++..++.++++|+++|.|++
T Consensus        81 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~  157 (215)
T PTZ00132         81 KGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKD-RQVKAR-QITFHRKKNLQYYDISAKSNYNFE  157 (215)
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcc-ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHH
Confidence            9999999999999999999999999887664 5799999999999854 333333 346777888999999999999999


Q ss_pred             HHHHHHHhhC
Q 030856          161 GCSPTIRRLI  170 (170)
Q Consensus       161 ~~~~~l~~~i  170 (170)
                      +.|.+|++.+
T Consensus       158 ~~f~~ia~~l  167 (215)
T PTZ00132        158 KPFLWLARRL  167 (215)
T ss_pred             HHHHHHHHHH
Confidence            9999998753

>cd00157 Rho Rho (Ras homology) family

Probab=100.00  E-value=2e-32  Score=179.46  Aligned_cols=158  Identities=35%  Similarity=0.554  Sum_probs=133.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +||+++|++|+|||||++++.++.+...+.++.. +........++..+.+.+||+||++++......+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            5899999999999999999999988766666665 344455567788889999999999988888888889999999999


Q ss_pred             eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCc-----------ccCHHHHHHHHHhcCC-eEEEeecCCC
Q 030856           90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR-----------QVSIEEGEAKSRELNV-MFIETSAKAG  156 (170)
Q Consensus        90 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~S~~~~  156 (170)
                      |+++++++.... .|+..+.... .+.|+++|+||+|+....           .+..+++..++..+++ +++++||++|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            999999988874 5666666554 489999999999987554           3457788888888888 9999999999


Q ss_pred             CChHHHHHHHHhh
Q 030856          157 FNIKGCSPTIRRL  169 (170)
Q Consensus       157 ~~v~~~~~~l~~~  169 (170)
                      .|+++++++|.+.
T Consensus       159 ~gi~~l~~~i~~~  171 (171)
T cd00157         159 EGVKEVFEEAIRA  171 (171)
T ss_pred             CCHHHHHHHHhhC
Confidence            9999999999763

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=100.00  E-value=2.1e-32  Score=180.90  Aligned_cols=159  Identities=35%  Similarity=0.482  Sum_probs=137.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      .||+++|.+|+|||||++++....+...+.++....+ ......++..+.+.+||+||++++...+..++..+++++++|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            6899999999999999999999887766667665333 344556677788999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856           90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      |+++.++++.+..|+..+..... .+.|+++|+||+|+...+.+..++...+++..+++++++||+++.|++++++++.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999888877543 57899999999999766667777778888888899999999999999999999986


Q ss_pred             h
Q 030856          169 L  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       161 ~  161 (180)
T cd04137         161 E  161 (180)
T ss_pred             H
Confidence            5

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04147 Ras_dva Ras-dva subfamily

Probab=100.00  E-value=2.1e-32  Score=183.35  Aligned_cols=158  Identities=32%  Similarity=0.502  Sum_probs=132.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEe
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   90 (170)
                      ||+++|.+|+|||||++++.+..+...+.++.. +.....+.+.+..+.+.+||+||+..+..++..++..+|++++|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999888776666654 4445556677777899999999999999888999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCC-CcccCHHHHHHHHH-hcCCeEEEeecCCCCChHHHHHHHH
Q 030856           91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVE-KRQVSIEEGEAKSR-ELNVMFIETSAKAGFNIKGCSPTIR  167 (170)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~v~~~~~~l~  167 (170)
                      ++++++++.+..|+..+..... .+.|+++|+||+|+.. .+.+..+...+... ..+++++++||++|.|++++|++|+
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999888877654 5799999999999865 35555555554443 4567899999999999999999998


Q ss_pred             hh
Q 030856          168 RL  169 (170)
Q Consensus       168 ~~  169 (170)
                      +.
T Consensus       160 ~~  161 (198)
T cd04147         160 RQ  161 (198)
T ss_pred             HH
Confidence            75

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=100.00  E-value=1.1e-32  Score=182.07  Aligned_cols=157  Identities=20%  Similarity=0.315  Sum_probs=122.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .+.+||+++|.+|||||||++++..+.+. .+.|+.+.+...  ..  ...+.+.+||+||++.++.++..+++++|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~--~~--~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEE--EE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            45689999999999999999999877664 456777765432  22  34578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhc-----CCeEEEeecCCCCChH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-----NVMFIETSAKAGFNIK  160 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~S~~~~~~v~  160 (170)
                      +|||++++++++....++..+... ..++.|++|++||.|+....  ..++........     .+.+++|||++|+|++
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            999999999999888877776543 22579999999999986543  333333322211     2346689999999999


Q ss_pred             HHHHHHHhhC
Q 030856          161 GCSPTIRRLI  170 (170)
Q Consensus       161 ~~~~~l~~~i  170 (170)
                      ++|++|.+.+
T Consensus       168 e~~~~l~~~~  177 (181)
T PLN00223        168 EGLDWLSNNI  177 (181)
T ss_pred             HHHHHHHHHH
Confidence            9999998754

>cd04129 Rho2 Rho2 subfamily

Probab=100.00  E-value=2e-32  Score=181.92  Aligned_cols=159  Identities=33%  Similarity=0.574  Sum_probs=134.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      +.||+++|++|+|||||++++..+.++..+.++....+. .....++....+.+||++|++.+......++.++|+++++
T Consensus         1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv   79 (187)
T cd04129           1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG   79 (187)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence            468999999999999999999988777766666554433 3455677778899999999988887777788999999999


Q ss_pred             EeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCC----------CcccCHHHHHHHHHhcCC-eEEEeecCCC
Q 030856           89 YDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE----------KRQVSIEEGEAKSRELNV-MFIETSAKAG  156 (170)
Q Consensus        89 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~S~~~~  156 (170)
                      ||++++++++.+. .|+..+.... ++.|+++|+||+|+.+          .+.+..++++.+++..++ ++++|||++|
T Consensus        80 ~~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  158 (187)
T cd04129          80 FAVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence            9999999999986 6888887655 5799999999999854          345667888999999986 8999999999


Q ss_pred             CChHHHHHHHHhh
Q 030856          157 FNIKGCSPTIRRL  169 (170)
Q Consensus       157 ~~v~~~~~~l~~~  169 (170)
                      .|++++|+++.+.
T Consensus       159 ~~v~~~f~~l~~~  171 (187)
T cd04129         159 EGVDDVFEAATRA  171 (187)
T ss_pred             CCHHHHHHHHHHH
Confidence            9999999999864

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04158 ARD1 ARD1 subfamily

Probab=100.00  E-value=6.2e-33  Score=181.63  Aligned_cols=153  Identities=22%  Similarity=0.372  Sum_probs=124.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEe
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   90 (170)
                      ||+++|.+|||||||++++.+..+. .+.+|.+.+...  ..  ...+.+.+||+||++.+...+..++.++|++++|||
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~~--~~--~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVET--VE--YKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEEE--EE--ECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            6899999999999999999988654 366776655532  22  245789999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC------CeEEEeecCCCCChHHHH
Q 030856           91 VASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN------VMFIETSAKAGFNIKGCS  163 (170)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~S~~~~~~v~~~~  163 (170)
                      ++++++++.+..|+..+.... ..+.|+++|+||+|+.+  ....++.++++...+      +.+++|||++|.|++++|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            999999999999988886543 24689999999999854  355666666664322      378899999999999999


Q ss_pred             HHHHhhC
Q 030856          164 PTIRRLI  170 (170)
Q Consensus       164 ~~l~~~i  170 (170)
                      ++|.+.+
T Consensus       154 ~~l~~~~  160 (169)
T cd04158         154 DWLSRQL  160 (169)
T ss_pred             HHHHHHH
Confidence            9998753

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=100.00  E-value=2.6e-33  Score=181.65  Aligned_cols=153  Identities=20%  Similarity=0.351  Sum_probs=119.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +||+++|.+|||||||++++..+.+. .+.|+.+.+...  ...  ..+.+.+||+||++.+..++..+++++|++++||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999877765 466777655432  222  3578999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCcccCHHHHHHHH----HhcCCeEEEeecCCCCChHHHHH
Q 030856           90 DVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIKGCSP  164 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~-~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~~S~~~~~~v~~~~~  164 (170)
                      |++++.+++.+..|+..+... ...+.|+++++||.|+.+... ..+....+.    ...++.++++||++|.|++++|+
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~  154 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS-AAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLD  154 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC-HHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHH
Confidence            999999999998887776543 225689999999999854322 112223332    12344678999999999999999


Q ss_pred             HHHh
Q 030856          165 TIRR  168 (170)
Q Consensus       165 ~l~~  168 (170)
                      +|.+
T Consensus       155 ~l~~  158 (159)
T cd04150         155 WLSN  158 (159)
T ss_pred             HHhc
Confidence            9975

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=100.00  E-value=1.6e-32  Score=181.82  Aligned_cols=159  Identities=23%  Similarity=0.344  Sum_probs=126.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEe-CCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ..+||+++|++|||||||++++....+... .++.+.+........ ++..+.+.+|||||++.+..++..+++++|+++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            468999999999999999999998876543 566665555544443 346688999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHh------cCCeEEEeecCCCCCh
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE------LNVMFIETSAKAGFNI  159 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~S~~~~~~v  159 (170)
                      +|||++++++++.+..|+..+..... .+.|+++|+||+|+...  ...++...+...      .+++++++||++|.|+
T Consensus        81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  158 (183)
T cd04152          81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGL  158 (183)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence            99999999999998888887765432 57999999999998542  333444444321      1357899999999999


Q ss_pred             HHHHHHHHhh
Q 030856          160 KGCSPTIRRL  169 (170)
Q Consensus       160 ~~~~~~l~~~  169 (170)
                      ++++++|.+.
T Consensus       159 ~~l~~~l~~~  168 (183)
T cd04152         159 QEGLEKLYEM  168 (183)
T ss_pred             HHHHHHHHHH
Confidence            9999999865

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04154 Arl2 Arl2 subfamily

Probab=100.00  E-value=2.6e-32  Score=179.37  Aligned_cols=156  Identities=22%  Similarity=0.339  Sum_probs=124.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ..+.++|+++|++|+|||||++++.+... ..+.++.+...  ..+..+  .+.+.+||+||++.+..++..++.++|++
T Consensus        11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   85 (173)
T cd04154          11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDAL   85 (173)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            45679999999999999999999998754 34456655333  233333  47899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCcccCHHHHHHHHH-----hcCCeEEEeecCCCCCh
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNI  159 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v  159 (170)
                      ++|||++++.+++....|+..+... ...+.|+++|+||+|+.+..  ..++.+....     ..+++++++||++|.|+
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  163 (173)
T cd04154          86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGL  163 (173)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCH
Confidence            9999999999999988888777543 23679999999999986533  4455555543     34679999999999999


Q ss_pred             HHHHHHHHh
Q 030856          160 KGCSPTIRR  168 (170)
Q Consensus       160 ~~~~~~l~~  168 (170)
                      +++|+++++
T Consensus       164 ~~l~~~l~~  172 (173)
T cd04154         164 LQGIDWLVD  172 (173)
T ss_pred             HHHHHHHhc
Confidence            999999875

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=100.00  E-value=7.8e-33  Score=182.96  Aligned_cols=156  Identities=19%  Similarity=0.325  Sum_probs=121.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .+++||+++|++|||||||++++..+.+.. +.||.+.++..  ...  ..+.+.+||+||++.++.++..+++++|++|
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI   89 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVET--VEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI   89 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            456999999999999999999998776653 56776655432  222  4578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCcccCHHHHHHHH-----HhcCCeEEEeecCCCCChH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~  160 (170)
                      +|||++++++++....++..+... ...+.|+++|+||.|+.+..  ..++.....     +...+.++++||++|.|++
T Consensus        90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~  167 (182)
T PTZ00133         90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY  167 (182)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence            999999999999988877776443 22568999999999985422  222222211     1223467799999999999


Q ss_pred             HHHHHHHhh
Q 030856          161 GCSPTIRRL  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      ++|++|.+.
T Consensus       168 e~~~~l~~~  176 (182)
T PTZ00133        168 EGLDWLSAN  176 (182)
T ss_pred             HHHHHHHHH
Confidence            999999875

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=100.00  E-value=1e-31  Score=179.29  Aligned_cols=149  Identities=21%  Similarity=0.336  Sum_probs=128.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeC-----CeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-----DRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   84 (170)
                      +||+++|.+|+|||||++++..+.+...+.+|.+.++......++     +..+.+.+||++|++.+..+...+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999888888998877776666553     467899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhc-------------------CCCCeEEEEEeCCCCCCCcccCHH----HHHHHH
Q 030856           85 AVVVYDVASRQSFLNTSKWIDEVRTER-------------------GSDVIIVLVGNKTDLVEKRQVSIE----EGEAKS  141 (170)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~vvv~nK~D~~~~~~~~~~----~~~~~~  141 (170)
                      +|+|||++++++|+.+..|+..+....                   +.++|+++|+||.|+.+++.+..+    ....++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999999987642                   247999999999999776655543    355678


Q ss_pred             HhcCCeEEEeecCCCCC
Q 030856          142 RELNVMFIETSAKAGFN  158 (170)
Q Consensus       142 ~~~~~~~~~~S~~~~~~  158 (170)
                      ++.+++.++.++.++..
T Consensus       161 ~~~~~~~i~~~c~~~~~  177 (202)
T cd04102         161 EQGNAEEINLNCTNGRL  177 (202)
T ss_pred             HhcCCceEEEecCCccc
Confidence            88999999999886654

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd01893 Miro1 Miro1 subfamily

Probab=100.00  E-value=2.6e-31  Score=173.53  Aligned_cols=157  Identities=25%  Similarity=0.368  Sum_probs=122.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +||+++|.+|+|||||++++..+.++..+.++.. .+ .......+..+++.+|||||.+.+...+..++..+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-EI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-ce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            4899999999999999999999888655333222 22 233345567789999999999888888888889999999999


Q ss_pred             eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC--HHHHHHHHHhcC--CeEEEeecCCCCChHHHHH
Q 030856           90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEEGEAKSRELN--VMFIETSAKAGFNIKGCSP  164 (170)
Q Consensus        90 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~--~~~~~~~~~~~~--~~~~~~S~~~~~~v~~~~~  164 (170)
                      |++++++++.+. .|+..+.... .+.|+++|+||+|+.+.+...  .+....++..++  .++++|||+++.|++++|+
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999985 6777776554 589999999999997654431  233333344433  3899999999999999999


Q ss_pred             HHHhh
Q 030856          165 TIRRL  169 (170)
Q Consensus       165 ~l~~~  169 (170)
                      .+.+.
T Consensus       158 ~~~~~  162 (166)
T cd01893         158 YAQKA  162 (166)
T ss_pred             HHHHH
Confidence            98875

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=100.00  E-value=6e-32  Score=176.58  Aligned_cols=153  Identities=18%  Similarity=0.191  Sum_probs=121.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEe
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   90 (170)
                      +|+++|++|||||||++++.++ +...+.++.+....  .+..  ..+.+.+||+||+..++.++..++.++|++++|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT--KLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEE--EEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            5899999999999999999977 55666777765432  3333  34789999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccC----HHHHHHHHHhc--CCeEEEeecCCC------C
Q 030856           91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVS----IEEGEAKSREL--NVMFIETSAKAG------F  157 (170)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~----~~~~~~~~~~~--~~~~~~~S~~~~------~  157 (170)
                      ++++.+++.+..|+..+..... .+.|+++|+||.|+...+...    ......++.+.  .+.+++|||++|      .
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~  155 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP  155 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence            9999999999999998876533 579999999999987654221    11122334333  357889999998      8


Q ss_pred             ChHHHHHHHHh
Q 030856          158 NIKGCSPTIRR  168 (170)
Q Consensus       158 ~v~~~~~~l~~  168 (170)
                      |+++.|+||.+
T Consensus       156 g~~~~~~wl~~  166 (167)
T cd04161         156 SIVEGLRWLLA  166 (167)
T ss_pred             CHHHHHHHHhc
Confidence            99999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=100.00  E-value=3.3e-31  Score=174.21  Aligned_cols=154  Identities=22%  Similarity=0.371  Sum_probs=121.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      +.++|+++|++|+|||||++++..+.+.. +.++.+.+...  ...+  ...+.+||+||++.+...+..+++++|++++
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~--~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEE--IVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEE--EEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            46899999999999999999999877654 45666654432  2232  4789999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHH-HHHH----HhcCCeEEEeecCCCCChHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEG-EAKS----RELNVMFIETSAKAGFNIKG  161 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~-~~~~----~~~~~~~~~~S~~~~~~v~~  161 (170)
                      |+|+++++++.....++..+..... .+.|+++++||+|+.+.  ...++. +.+.    ...++++++|||++|.|+++
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e  166 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE  166 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence            9999999999888777777654432 57999999999998642  233332 2222    23456899999999999999


Q ss_pred             HHHHHHh
Q 030856          162 CSPTIRR  168 (170)
Q Consensus       162 ~~~~l~~  168 (170)
                      +|++|++
T Consensus       167 ~~~~l~~  173 (174)
T cd04153         167 GLDWIAS  173 (174)
T ss_pred             HHHHHhc
Confidence            9999976

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04157 Arl6 Arl6 subfamily

Probab=100.00  E-value=9.7e-32  Score=174.78  Aligned_cols=152  Identities=17%  Similarity=0.250  Sum_probs=118.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC-CCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +|+++|++|||||||++++.+... ...+.++.+.....  ..  ...+++.+||+||.+.+..++..+++++|++++|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--FE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--EE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753 45566776644322  22  34578999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhc---CCCCeEEEEEeCCCCCCCcccCHHHHHHHHH-----hcCCeEEEeecCCCCChHH
Q 030856           90 DVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIKG  161 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~---~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v~~  161 (170)
                      |++++.++.....|+..+....   ..+.|+++|+||+|+.+...  .++......     ...+.++++||++|.|+++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            9999999988888888775532   25799999999999865322  222222211     1234689999999999999


Q ss_pred             HHHHHHh
Q 030856          162 CSPTIRR  168 (170)
Q Consensus       162 ~~~~l~~  168 (170)
                      +|++|.+
T Consensus       155 ~~~~l~~  161 (162)
T cd04157         155 GVQWLQA  161 (162)
T ss_pred             HHHHHhc
Confidence            9999975

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=100.00  E-value=3e-32  Score=177.12  Aligned_cols=160  Identities=33%  Similarity=0.535  Sum_probs=145.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEe-CCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ...+|+++||+.++|||+|+-.+..+.++..|.||.. +-+...+.+ ++..+.+.+|||+|+++|..++...+..+|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            3568999999999999999999999999999999998 666677778 49999999999999999999888889999999


Q ss_pred             EEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcCC-eEEEe
Q 030856           86 VVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIET  151 (170)
Q Consensus        86 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  151 (170)
                      ++||++.++++|+++ ..|+.++..++ +++|+++||+|.|+...            ..+..++++.++++.|+ .|++|
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec  159 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC  159 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence            999999999999997 88999998887 89999999999998732            35778999999999996 99999


Q ss_pred             ecCCCCChHHHHHHHHh
Q 030856          152 SAKAGFNIKGCSPTIRR  168 (170)
Q Consensus       152 S~~~~~~v~~~~~~l~~  168 (170)
                      ||+++.|++++|+..+.
T Consensus       160 Sa~tq~~v~~vF~~a~~  176 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIR  176 (198)
T ss_pred             hhhhhCCcHHHHHHHHH
Confidence            99999999999998765

>cd00879 Sar1 Sar1 subfamily

Probab=99.98  E-value=1.2e-30  Score=173.82  Aligned_cols=157  Identities=20%  Similarity=0.284  Sum_probs=125.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .++.+|+++|++|||||||++++.+..+. .+.++.+...  ..+.+++  ..+.+||+||+..+...+..++.++|+++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii   91 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV   91 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            45799999999999999999999987663 4555555433  2333443  67899999999998888899999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHh----------------cCCeEE
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE----------------LNVMFI  149 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~  149 (170)
                      +|+|.+++++++....|+..+..... .+.|+++++||+|+..  .+..++.+.....                ..+.++
T Consensus        92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (190)
T cd00879          92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF  169 (190)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence            99999999999888888887765432 5799999999999854  4555666666543                224799


Q ss_pred             EeecCCCCChHHHHHHHHhhC
Q 030856          150 ETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       150 ~~S~~~~~~v~~~~~~l~~~i  170 (170)
                      +|||++|+|++++|++|.+.+
T Consensus       170 ~~Sa~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         170 MCSVVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             EeEecCCCChHHHHHHHHhhC
Confidence            999999999999999999865

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.98  E-value=5.7e-31  Score=170.86  Aligned_cols=152  Identities=21%  Similarity=0.345  Sum_probs=118.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEe
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   90 (170)
                      +|+++|++|+|||||++++.++.+.. +.++.+.+...  +.. +..+.+.+||+||+..+...+..++.++|++++|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~--~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEM--LQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceEE--EEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            58999999999999999999987753 35665544322  222 245789999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHH------HHHHhcCCeEEEeecCCCCChHHHH
Q 030856           91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGE------AKSRELNVMFIETSAKAGFNIKGCS  163 (170)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~------~~~~~~~~~~~~~S~~~~~~v~~~~  163 (170)
                      ++++.++.....|+..+.+... .+.|+++|+||+|+....  ..++..      .++...++++++|||++|.|++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            9999999998888887765432 579999999999985422  222222      1222345579999999999999999


Q ss_pred             HHHHh
Q 030856          164 PTIRR  168 (170)
Q Consensus       164 ~~l~~  168 (170)
                      ++|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            99975

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.98  E-value=1.1e-30  Score=170.73  Aligned_cols=153  Identities=22%  Similarity=0.370  Sum_probs=119.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC------CCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   84 (170)
                      +|+++|++|+|||||++++.+...      ...+.++.+.+...  +..+  ...+.+||+||++.+..++..++.++|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGT--IEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEE--EEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            689999999999999999986432      23344555544432  2333  4689999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHh-------cCCeEEEeecCCC
Q 030856           85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-------LNVMFIETSAKAG  156 (170)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~S~~~~  156 (170)
                      +++|+|+++++++.....|+..+.+.. ..+.|+++++||+|+...  ...++...+...       .+++++++||++|
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  154 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG  154 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence            999999999988998888888776543 257999999999998553  333444444332       3458999999999


Q ss_pred             CChHHHHHHHHhh
Q 030856          157 FNIKGCSPTIRRL  169 (170)
Q Consensus       157 ~~v~~~~~~l~~~  169 (170)
                      .|+++++++|+++
T Consensus       155 ~gv~e~~~~l~~~  167 (167)
T cd04160         155 TGVREGIEWLVER  167 (167)
T ss_pred             cCHHHHHHHHhcC
Confidence            9999999999763

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04151 Arl1 Arl1 subfamily

Probab=99.97  E-value=4.8e-31  Score=170.94  Aligned_cols=151  Identities=20%  Similarity=0.310  Sum_probs=114.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEe
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   90 (170)
                      ||+++|++++|||||++++..+.+.. +.++.+.+...  ..  ....++.+||+||++.+..++..++..+|++++|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~--~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVET--VT--YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeEE--EE--ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998776643 45555544332  22  244789999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHH-hcCCCCeEEEEEeCCCCCCCcccCHHHHHH-HH----HhcCCeEEEeecCCCCChHHHHH
Q 030856           91 VASRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDLVEKRQVSIEEGEA-KS----RELNVMFIETSAKAGFNIKGCSP  164 (170)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~-~~----~~~~~~~~~~S~~~~~~v~~~~~  164 (170)
                      ++++.++.....++..+.+ ....+.|+++|+||+|+.+..  ...+... +.    ...+.+++++||++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            9998888777666655433 223579999999999986433  2222222 21    12235799999999999999999


Q ss_pred             HHHh
Q 030856          165 TIRR  168 (170)
Q Consensus       165 ~l~~  168 (170)
                      +|++
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9986

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.97  E-value=2.5e-30  Score=169.93  Aligned_cols=158  Identities=24%  Similarity=0.354  Sum_probs=127.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ..++.+|+++|+.||||||+++++..+... ...||.+.+.....  ..+  +.+.+||.+|+..++..|+.|+.++|++
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~i~--~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i   85 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEEIK--YKG--YSLTIWDLGGQESFRPLWKSYFQNADGI   85 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEEEE--ETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccceee--eCc--EEEEEEeccccccccccceeecccccee
Confidence            367899999999999999999999876543 35677665554433  333  6789999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHH------hcCCeEEEeecCCCCC
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR------ELNVMFIETSAKAGFN  158 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~S~~~~~~  158 (170)
                      |||+|.++++.+......+..+..... .+.|+++++||.|+.+.  ...++......      ...+.++.||+.+|+|
T Consensus        86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G  163 (175)
T PF00025_consen   86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG  163 (175)
T ss_dssp             EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred             EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence            999999999999998888887766432 67999999999998653  33444444332      2345799999999999


Q ss_pred             hHHHHHHHHhhC
Q 030856          159 IKGCSPTIRRLI  170 (170)
Q Consensus       159 v~~~~~~l~~~i  170 (170)
                      +.+.++||.+.|
T Consensus       164 v~e~l~WL~~~~  175 (175)
T PF00025_consen  164 VDEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC
Confidence            999999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.97  E-value=1.5e-30  Score=168.55  Aligned_cols=151  Identities=22%  Similarity=0.315  Sum_probs=119.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEe
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   90 (170)
                      ||+++|.+|+|||||++++.+... ..+.++.+.....  ....  ...+.+||+||+..+...+..++..+|++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVET--VEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEE--EEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999998873 3445555543332  2232  4689999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHH-----hcCCeEEEeecCCCCChHHHHH
Q 030856           91 VASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIKGCSP  164 (170)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v~~~~~  164 (170)
                      +++++++.....|+..+.... ..+.|+++|+||+|+....  ..++......     ...++++++||++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            999999999988887776543 3679999999999986543  2333333332     2346899999999999999999


Q ss_pred             HHHh
Q 030856          165 TIRR  168 (170)
Q Consensus       165 ~l~~  168 (170)
                      +|..
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9975

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PTZ00099 rab6; Provisional

Probab=99.97  E-value=8.5e-30  Score=167.16  Aligned_cols=138  Identities=67%  Similarity=1.008  Sum_probs=126.2

Q ss_pred             CCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhc
Q 030856           32 DKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER  111 (170)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~  111 (170)
                      +.+.+.+.+|.+.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++++|+.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            34567788999999988888888999999999999999999999999999999999999999999999999999987766


Q ss_pred             CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          112 GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       112 ~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      .++.|+++|+||+|+...+.+..+++..++..+++.+++|||++|.|++++|++|++.
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~  140 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAK  140 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            6789999999999998777788889999999999999999999999999999999875

>PLN00023 GTP-binding protein; Provisional

Probab=99.97  E-value=7.1e-30  Score=178.26  Aligned_cols=142  Identities=21%  Similarity=0.371  Sum_probs=123.2

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeC-------------CeEEEEEEEecCChhhh
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-------------DRTVRLQLWDTAGQERF   71 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~D~~g~~~~   71 (170)
                      ++...+||+++|..|||||||++++..+.+...+.++.+.++....+.++             +..+.+.|||++|++.+
T Consensus        17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf   96 (334)
T PLN00023         17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY   96 (334)
T ss_pred             CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence            35567999999999999999999999998888888999888776666554             24688999999999999


Q ss_pred             hhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC------------CCCeEEEEEeCCCCCCCc---c---cC
Q 030856           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG------------SDVIIVLVGNKTDLVEKR---Q---VS  133 (170)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~------------~~~~~vvv~nK~D~~~~~---~---~~  133 (170)
                      ..++..+++++|++|+|||++++++++.+..|+..+.....            .++|++||+||+|+...+   .   +.
T Consensus        97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~  176 (334)
T PLN00023         97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL  176 (334)
T ss_pred             hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence            99999999999999999999999999999999999987631            358999999999997543   2   35


Q ss_pred             HHHHHHHHHhcCC
Q 030856          134 IEEGEAKSRELNV  146 (170)
Q Consensus       134 ~~~~~~~~~~~~~  146 (170)
                      .++++++|+.+++
T Consensus       177 ~e~a~~~A~~~g~  189 (334)
T PLN00023        177 VDAARQWVEKQGL  189 (334)
T ss_pred             HHHHHHHHHHcCC
Confidence            7999999999886

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.97  E-value=1.1e-32  Score=173.66  Aligned_cols=168  Identities=35%  Similarity=0.546  Sum_probs=157.4

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhc
Q 030856            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (170)
Q Consensus         1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   80 (170)
                      |.+..-+..+|++|+|..++||||++++++.+-+...+..+++.++...++.+....+++.+||++|++++......|++
T Consensus        12 m~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyr   91 (246)
T KOG4252|consen   12 MDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYR   91 (246)
T ss_pred             CCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhc
Confidence            33444567899999999999999999999999999999999999999999888888889999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 030856           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~  160 (170)
                      ++.+.++||+.+|+.+|+....|.+.+.... ..+|.++|-||+|+.+..++..++.+.+++..++.++-+|+++..|+.
T Consensus        92 gaqa~vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~  170 (246)
T KOG4252|consen   92 GAQASVLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVM  170 (246)
T ss_pred             cccceEEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhH
Confidence            9999999999999999999999999998877 579999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 030856          161 GCSPTIRRL  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      ++|.+|++.
T Consensus       171 ~vF~YLaeK  179 (246)
T KOG4252|consen  171 HVFAYLAEK  179 (246)
T ss_pred             HHHHHHHHH
Confidence            999999864

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.97  E-value=1.9e-29  Score=167.15  Aligned_cols=157  Identities=18%  Similarity=0.227  Sum_probs=121.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .+.++|+++|.+|+|||||++++.++.+. .+.++.+....  ....+  .+++.+||+||+..+...+..++.++|+++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSE--ELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            45699999999999999999999987653 33444443222  22233  367899999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHh------------cCCeEEEeec
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE------------LNVMFIETSA  153 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~S~  153 (170)
                      +|+|+++++++.....++..+.... ..+.|+++|+||+|+..  .++.++..+....            ....+++|||
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa  167 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV  167 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence            9999999999988888877765432 25789999999999853  3444554443311            2336999999


Q ss_pred             CCCCChHHHHHHHHhhC
Q 030856          154 KAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       154 ~~~~~v~~~~~~l~~~i  170 (170)
                      +++.|++++++||.+++
T Consensus       168 ~~~~g~~~~~~wl~~~~  184 (184)
T smart00178      168 VRRMGYGEGFKWLSQYI  184 (184)
T ss_pred             ccCCChHHHHHHHHhhC
Confidence            99999999999998764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.97  E-value=4.4e-29  Score=161.42  Aligned_cols=151  Identities=25%  Similarity=0.351  Sum_probs=120.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeC
Q 030856           12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDV   91 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   91 (170)
                      |+++|++|+|||||++++.+..+...+.++.+.+....  ..+  ...+.+||+||...+...+..++..+|++++|+|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~--~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKV--TKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEE--EEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            79999999999999999999988888888877665432  222  37899999999999999999999999999999999


Q ss_pred             CChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHH-----HhcCCeEEEeecCCCCChHHHHHH
Q 030856           92 ASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      ++++++.....|+..+.... ..+.|+++|+||+|+.+....  .+.....     ...+++++++|++++.|+++++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  155 (159)
T cd04159          78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW  155 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence            99988888877777765432 257899999999998654322  2221111     223468999999999999999999


Q ss_pred             HHh
Q 030856          166 IRR  168 (170)
Q Consensus       166 l~~  168 (170)
                      |.+
T Consensus       156 l~~  158 (159)
T cd04159         156 LIK  158 (159)
T ss_pred             Hhh
Confidence            976

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.97  E-value=8.1e-29  Score=153.88  Aligned_cols=159  Identities=19%  Similarity=0.308  Sum_probs=129.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      .+++++|.++|..|+||||+++++.+.. .+...|+.+.+.....  .  ..+++.+||.+|+...++.|+.|+..+|++
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~--~--~~~~L~iwDvGGq~~lr~~W~nYfestdgl   87 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTLE--Y--KGYTLNIWDVGGQKTLRSYWKNYFESTDGL   87 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEEE--e--cceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence            4568999999999999999999999876 3444666664443333  3  457899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCccc---C-HHHHHHHHHhcCCeEEEeecCCCCChH
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQV---S-IEEGEAKSRELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~---~-~~~~~~~~~~~~~~~~~~S~~~~~~v~  160 (170)
                      |+|+|.+++..++.....+..+..... .+.|+++++||.|+...-..   . ....+.+++..+++++.||+.+|+++.
T Consensus        88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~  167 (185)
T KOG0073|consen   88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLL  167 (185)
T ss_pred             EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHH
Confidence            999999999999998888887766443 57899999999998743221   1 123455667889999999999999999


Q ss_pred             HHHHHHHhh
Q 030856          161 GCSPTIRRL  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      +-+.||++.
T Consensus       168 ~gidWL~~~  176 (185)
T KOG0073|consen  168 EGIDWLCDD  176 (185)
T ss_pred             HHHHHHHHH
Confidence            999999864

>cd01890 LepA LepA subfamily

Probab=99.97  E-value=1.6e-28  Score=162.20  Aligned_cols=154  Identities=18%  Similarity=0.219  Sum_probs=113.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC-------CCCCccc------eeeeeeeEEEE--Ee---CCeEEEEEEEecCChhhhh
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDK-------FDNTYQA------TIGIDFLSKTM--YL---EDRTVRLQLWDTAGQERFR   72 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~-------~~~~~~~------~~~~~~~~~~~--~~---~~~~~~~~i~D~~g~~~~~   72 (170)
                      +|+++|.+++|||||++++++..       ....+.+      +.+.++.....  .+   ++..+.+.+|||||++++.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            79999999999999999998742       1111111      11222222222  12   5567889999999999999


Q ss_pred             hhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC---eEE
Q 030856           73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV---MFI  149 (170)
Q Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~  149 (170)
                      ..+..++..+|++|+|+|++++.+.+....|....    ..++|+++|+||+|+.+.+  ..+...++++..++   .++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  155 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI  155 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence            99999999999999999999876666665554322    2468999999999985432  12334456666666   489


Q ss_pred             EeecCCCCChHHHHHHHHhhC
Q 030856          150 ETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       150 ~~S~~~~~~v~~~~~~l~~~i  170 (170)
                      ++||++|.|+++++++|.+.+
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         156 LVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EeeccCCCCHHHHHHHHHhhC
Confidence            999999999999999998754

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.97  E-value=1.3e-28  Score=160.95  Aligned_cols=156  Identities=16%  Similarity=0.176  Sum_probs=109.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh---------hhhhhhhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR---------SLIPSYIR   80 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~   80 (170)
                      .+|+++|.+|+|||||++++.+........+..+.+......  .....++.+|||||.....         ........
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            379999999999999999999887643322222222222222  2234789999999974211         01111123


Q ss_pred             CCcEEEEEEeCCChhhH--HhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCC
Q 030856           81 DSSVAVVVYDVASRQSF--LNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (170)
Q Consensus        81 ~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  158 (170)
                      .+|++++|+|++++.++  +....|+..+.... .+.|+++|+||+|+.+.+.+..  .+.+....+.++++|||++|.|
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~g  155 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEG  155 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCC
Confidence            46899999999987653  55567777776543 4799999999999866544322  4555666677999999999999


Q ss_pred             hHHHHHHHHhhC
Q 030856          159 IKGCSPTIRRLI  170 (170)
Q Consensus       159 v~~~~~~l~~~i  170 (170)
                      ++++++++.+.|
T Consensus       156 i~~l~~~l~~~~  167 (168)
T cd01897         156 VDEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01898 Obg Obg subfamily

Probab=99.97  E-value=1.1e-28  Score=161.54  Aligned_cols=158  Identities=15%  Similarity=0.133  Sum_probs=112.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh----hhhhhhhh---hcCCc
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPSY---IRDSS   83 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~d   83 (170)
                      +|+++|.+|+|||||++++.+........+..+.+........++ ...+.+|||||..+    ...+...+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            689999999999999999997654211112112222222222222 24789999999632    22223333   44699


Q ss_pred             EEEEEEeCCCh-hhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCcccCHHHHHHHHHh-cCCeEEEeecCCCCCh
Q 030856           84 VAVVVYDVASR-QSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNI  159 (170)
Q Consensus        84 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~--~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~v  159 (170)
                      ++++|+|++++ ++++.+..|.+.+.....  .+.|+++|+||+|+.+.... .+....+... .+.+++++|++++.|+
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            99999999998 789998888888876542  46899999999998665443 3344445555 3789999999999999


Q ss_pred             HHHHHHHHhhC
Q 030856          160 KGCSPTIRRLI  170 (170)
Q Consensus       160 ~~~~~~l~~~i  170 (170)
                      +++|++|.+++
T Consensus       160 ~~l~~~i~~~~  170 (170)
T cd01898         160 DELLRKLAELL  170 (170)
T ss_pred             HHHHHHHHhhC
Confidence            99999998864

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.96  E-value=1e-27  Score=154.84  Aligned_cols=158  Identities=27%  Similarity=0.407  Sum_probs=129.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      .+||+++|.+|+|||||++++.....+..+.++.+.+........++..+.+.+||+||+..+...+..+...++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            47999999999999999999999987777778888787777677777778899999999999999899999999999999


Q ss_pred             EeCCCh-hhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           89 YDVASR-QSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        89 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      +|.... .++.... .|...+......+.|+++++||+|+.... ........+......+++++||.++.|+++++++|
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            998876 6666654 66666665544489999999999986544 33344444444556689999999999999999987


Q ss_pred             H
Q 030856          167 R  167 (170)
Q Consensus       167 ~  167 (170)
                      .
T Consensus       160 ~  160 (161)
T TIGR00231       160 E  160 (161)
T ss_pred             h
Confidence            4

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04155 Arl3 Arl3 subfamily

Probab=99.96  E-value=8.7e-28  Score=157.81  Aligned_cols=157  Identities=20%  Similarity=0.302  Sum_probs=117.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ..+.++|+++|++|+|||||++++.+.... .+.++.+.+..  .+...+  ..+.+||+||...+...+..+++++|++
T Consensus        11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~--~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~i   85 (173)
T cd04155          11 SSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIK--TVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCL   85 (173)
T ss_pred             cCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence            345799999999999999999999987553 33455553332  222333  5789999999998888888999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhc-----CCeEEEeecCCCCCh
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-----NVMFIETSAKAGFNI  159 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~S~~~~~~v  159 (170)
                      ++|+|.+++.++.....++..+.... ..+.|+++++||+|+.+...  .++..+.....     ..+++++||++|+|+
T Consensus        86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi  163 (173)
T cd04155          86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEEIAEALNLHDLRDRTWHIQACSAKTGEGL  163 (173)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHHHHHHcCCcccCCCeEEEEEeECCCCCCH
Confidence            99999999888888877776665432 25799999999999854332  22222211111     125789999999999


Q ss_pred             HHHHHHHHhh
Q 030856          160 KGCSPTIRRL  169 (170)
Q Consensus       160 ~~~~~~l~~~  169 (170)
                      +++|+||++.
T Consensus       164 ~~~~~~l~~~  173 (173)
T cd04155         164 QEGMNWVCKN  173 (173)
T ss_pred             HHHHHHHhcC
Confidence            9999999863

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01878 HflX HflX subfamily

Probab=99.96  E-value=4.3e-28  Score=163.25  Aligned_cols=157  Identities=19%  Similarity=0.214  Sum_probs=113.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh---------hhhhhhh
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPS   77 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~   77 (170)
                      ...++|+++|++|||||||++++.+........+..+.+........++. ..+.+|||||...         +.... .
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence            34589999999999999999999987643222222222333333333332 3789999999632         12111 2


Q ss_pred             hhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCC
Q 030856           78 YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF  157 (170)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  157 (170)
                      .+..+|++++|+|++++.++.....|...+......+.|+++|+||+|+.+.....     ......+.+++++||+++.
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~~  191 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTGE  191 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCCC
Confidence            35689999999999998888877777766665544578999999999986543321     3455567799999999999


Q ss_pred             ChHHHHHHHHhhC
Q 030856          158 NIKGCSPTIRRLI  170 (170)
Q Consensus       158 ~v~~~~~~l~~~i  170 (170)
                      |+++++++|.+.|
T Consensus       192 gi~~l~~~L~~~~  204 (204)
T cd01878         192 GLDELLEAIEELL  204 (204)
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999998865

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.96  E-value=6.7e-28  Score=171.68  Aligned_cols=159  Identities=14%  Similarity=0.102  Sum_probs=117.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh----hhhh---hhhhhcCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSL---IPSYIRDS   82 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~---~~~~~~~~   82 (170)
                      -.|+++|.|++|||||++++...+......+.++.......+.+. ...++.+||+||..+    ...+   ....++++
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            468999999999999999999865432222333333333333332 224689999999632    1122   23345679


Q ss_pred             cEEEEEEeCCChhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 030856           83 SVAVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        83 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~  160 (170)
                      +++++|+|++++++++.+..|..++..+..  .+.|+++|+||+|+........+..+.++...+.+++++||++++|++
T Consensus       238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~  317 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD  317 (335)
T ss_pred             CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence            999999999988889999999888877643  478999999999987655444445555666677899999999999999


Q ss_pred             HHHHHHHhh
Q 030856          161 GCSPTIRRL  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      +++++|.+.
T Consensus       318 eL~~~L~~~  326 (335)
T PRK12299        318 ELLRALWEL  326 (335)
T ss_pred             HHHHHHHHH
Confidence            999999875

>cd04171 SelB SelB subfamily

Probab=99.96  E-value=1.5e-27  Score=155.22  Aligned_cols=152  Identities=18%  Similarity=0.123  Sum_probs=105.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC---CCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDK---FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      +.|+++|.+|+|||||++++.+..   .+..+.++.+.+.........+ ...+.+|||||++.+......++.++|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            468999999999999999999643   2222233334343333344432 357999999999988777777888999999


Q ss_pred             EEEeCCC---hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc--cCHHHHHHHHHh---cCCeEEEeecCCCCC
Q 030856           87 VVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSRE---LNVMFIETSAKAGFN  158 (170)
Q Consensus        87 ~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~S~~~~~~  158 (170)
                      +|+|+++   +++.+.+.    .+.. . ...|+++++||+|+.+...  ...++..+..+.   .+.+++++|++++.|
T Consensus        80 ~V~d~~~~~~~~~~~~~~----~~~~-~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (164)
T cd04171          80 LVVAADEGIMPQTREHLE----ILEL-L-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG  153 (164)
T ss_pred             EEEECCCCccHhHHHHHH----HHHH-h-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence            9999986   33333222    2221 1 1248999999999865421  112334444444   467999999999999


Q ss_pred             hHHHHHHHHh
Q 030856          159 IKGCSPTIRR  168 (170)
Q Consensus       159 v~~~~~~l~~  168 (170)
                      ++++++.+.+
T Consensus       154 v~~l~~~l~~  163 (164)
T cd04171         154 IEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999999875

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK04213 GTP-binding protein; Provisional

Probab=99.96  E-value=3.9e-28  Score=163.11  Aligned_cols=157  Identities=24%  Similarity=0.278  Sum_probs=108.2

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCC-----------hh
Q 030856            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-----------QE   69 (170)
Q Consensus         1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~   69 (170)
                      |+..++...++|+++|.+|+|||||++++.+..+.....++.+..  .......    .+.+|||||           ++
T Consensus         1 ~~~~~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~   74 (201)
T PRK04213          1 MFETRPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK--PNHYDWG----DFILTDLPGFGFMSGVPKEVQE   74 (201)
T ss_pred             CCcccCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC--ceEEeec----ceEEEeCCccccccccCHHHHH
Confidence            666677778999999999999999999999887655555544332  2222222    589999999           45


Q ss_pred             hhhhhhhhhhc----CCcEEEEEEeCCChhhH----Hh------HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHH
Q 030856           70 RFRSLIPSYIR----DSSVAVVVYDVASRQSF----LN------TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE  135 (170)
Q Consensus        70 ~~~~~~~~~~~----~~d~~i~v~d~~~~~~~----~~------~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~  135 (170)
                      .++..+..++.    .++++++|+|.++...+    ..      ....+..+.   ..++|+++|+||+|+.+.+   .+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~  148 (201)
T PRK04213         75 KIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DE  148 (201)
T ss_pred             HHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HH
Confidence            56665555554    45788888887643211    00      011112222   2479999999999986543   34


Q ss_pred             HHHHHHHhcCC---------eEEEeecCCCCChHHHHHHHHhhC
Q 030856          136 EGEAKSRELNV---------MFIETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       136 ~~~~~~~~~~~---------~~~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                      ...+++...++         +++++||++| |+++++++|.+.+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~  191 (201)
T PRK04213        149 VLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRL  191 (201)
T ss_pred             HHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhh
Confidence            45566666654         5899999999 9999999998753

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.96  E-value=7.1e-28  Score=153.47  Aligned_cols=134  Identities=19%  Similarity=0.273  Sum_probs=100.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh-----hhhhhhhhhhcCCcEE
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-----RFRSLIPSYIRDSSVA   85 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~d~~   85 (170)
                      ||+++|++|+|||||++++.+...  .+.++.+.++            .-.+|||||..     .+..+. ..++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~------------~~~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEY------------NDGAIDTPGEYVENRRLYSALI-VTAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEE------------cCeeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence            799999999999999999998764  2233332221            11689999973     233333 347899999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCCChHHHHH
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKGCSP  164 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~  164 (170)
                      ++|||++++.++.. ..|....      ..|+++|+||+|+.+ +....++++++++..+. +++++||++|.|++++|+
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  138 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD  138 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            99999999988765 3343321      249999999999864 34456677788888777 899999999999999999


Q ss_pred             HHH
Q 030856          165 TIR  167 (170)
Q Consensus       165 ~l~  167 (170)
                      ++.
T Consensus       139 ~l~  141 (142)
T TIGR02528       139 YLN  141 (142)
T ss_pred             HHh
Confidence            985

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.1e-28  Score=154.80  Aligned_cols=160  Identities=19%  Similarity=0.318  Sum_probs=132.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ..++.+|+++|-.++||||++.++..++.... .||.+..+.....    +.+++++||.+|++.++..|+.|+++.+++
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~l   88 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGL   88 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEE
Confidence            56789999999999999999999998877655 8888877766554    358899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCccc---CHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQV---SIEEGEAKSRELNVMFIETSAKAGFNIKG  161 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~S~~~~~~v~~  161 (170)
                      |||+|.+|++.+...+..+..+..+.. .+.|+++++||.|+..+...   .......-.+.+...+-.|+|.+|+|+.+
T Consensus        89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~e  168 (181)
T KOG0070|consen   89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYE  168 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHH
Confidence            999999999999999888888877665 68999999999998765442   22222222233456889999999999999


Q ss_pred             HHHHHHhhC
Q 030856          162 CSPTIRRLI  170 (170)
Q Consensus       162 ~~~~l~~~i  170 (170)
                      .++|+.+.+
T Consensus       169 gl~wl~~~~  177 (181)
T KOG0070|consen  169 GLDWLSNNL  177 (181)
T ss_pred             HHHHHHHHH
Confidence            999998753

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.96  E-value=1.3e-26  Score=157.63  Aligned_cols=162  Identities=40%  Similarity=0.573  Sum_probs=133.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      ..+||+++|++|+|||||++++.+..+...+.++.+..+........+..+++.+|||+|+++++..+..++.+++++++
T Consensus         4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~   83 (219)
T COG1100           4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI   83 (219)
T ss_pred             ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence            34899999999999999999999999998888888877777777666668899999999999999999999999999999


Q ss_pred             EEeCCC-hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc------------ccCHHHHHHHHHhc---CCeEEEe
Q 030856           88 VYDVAS-RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSREL---NVMFIET  151 (170)
Q Consensus        88 v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~  151 (170)
                      +||.++ ..+.+....|...+........|+++++||+|+...+            ..........+...   ...++++
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (219)
T COG1100          84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET  163 (219)
T ss_pred             EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence            999998 4555666888888887766679999999999998653            23333333333332   3358999


Q ss_pred             ecC--CCCChHHHHHHHHhh
Q 030856          152 SAK--AGFNIKGCSPTIRRL  169 (170)
Q Consensus       152 S~~--~~~~v~~~~~~l~~~  169 (170)
                      |++  .+.++.++|..+.+.
T Consensus       164 s~~~~~~~~v~~~~~~~~~~  183 (219)
T COG1100         164 SAKSLTGPNVNELFKELLRK  183 (219)
T ss_pred             ecccCCCcCHHHHHHHHHHH
Confidence            999  999999999888753

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.96  E-value=1.3e-26  Score=148.51  Aligned_cols=154  Identities=45%  Similarity=0.731  Sum_probs=124.0

Q ss_pred             EEcCCCCCHHHHHHHHhcCCC-CCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCC
Q 030856           14 FLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA   92 (170)
Q Consensus        14 i~G~~~~GKStll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   92 (170)
                      ++|++|+|||||++++.+... .....++. .+.........+....+.+||+||...+......+++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999999877 45555555 6777777776677889999999999988888888999999999999999


Q ss_pred             ChhhHHhHHHHH-HHHHHhcCCCCeEEEEEeCCCCCCCcccCHHH-HHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856           93 SRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLVEKRQVSIEE-GEAKSRELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus        93 ~~~~~~~~~~~~-~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ++.++.....|. .........+.|+++++||+|+.......... ........+.+++++|+.++.|+++++++|.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  157 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELAE  157 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHhC
Confidence            999888888773 33333444789999999999987544433322 44555666789999999999999999999864

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.95  E-value=1e-26  Score=143.07  Aligned_cols=162  Identities=23%  Similarity=0.298  Sum_probs=137.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC--CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh-hhhhhhhhcCCcE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD--NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-RSLIPSYIRDSSV   84 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~d~   84 (170)
                      +..||+++|..++|||++++.+..+...  ..+.+|...-+.....+..+..-.++++||.|.... ..+-++|++-+|+
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            5689999999999999999999987654  455677764444444455566678999999997666 7788999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 030856           85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCS  163 (170)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (170)
                      +++||+..+++||+.+.-.-..+.+... ..+|+++++||+|+.+++++..+.++.||++-.+..+++++.+..++-+.|
T Consensus        88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf  167 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF  167 (198)
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence            9999999999999987655555555443 679999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhh
Q 030856          164 PTIRRL  169 (170)
Q Consensus       164 ~~l~~~  169 (170)
                      .+++..
T Consensus       168 ~~l~~r  173 (198)
T KOG3883|consen  168 TYLASR  173 (198)
T ss_pred             HHHHHh
Confidence            998865

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.95  E-value=2e-27  Score=151.03  Aligned_cols=148  Identities=22%  Similarity=0.296  Sum_probs=105.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh------hhhhhhh--cC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSYI--RD   81 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~--~~   81 (170)
                      ++|+++|.||+|||||+|+|++.+......|..+.+.....+...+  ..+.++|+||.....      .....++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            6899999999999999999999886644556666676666666666  568999999943322      2223333  58


Q ss_pred             CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 030856           82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG  161 (170)
Q Consensus        82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~  161 (170)
                      .|+++.|.|+++.+.-..+   ..++..   .+.|+++++||+|....+.... ....+++..|++++++||++++|+++
T Consensus        79 ~D~ii~VvDa~~l~r~l~l---~~ql~e---~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNLYL---TLQLLE---LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             SSEEEEEEEGGGHHHHHHH---HHHHHH---TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             CCEEEEECCCCCHHHHHHH---HHHHHH---cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence            9999999999875432222   223332   3799999999999876555432 46778888999999999999999999


Q ss_pred             HHHHH
Q 030856          162 CSPTI  166 (170)
Q Consensus       162 ~~~~l  166 (170)
                      ++++|
T Consensus       152 L~~~I  156 (156)
T PF02421_consen  152 LKDAI  156 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            99875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.95  E-value=2.8e-26  Score=149.86  Aligned_cols=155  Identities=18%  Similarity=0.161  Sum_probs=107.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeC-CeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      .|+++|.+|+|||||++++....+...+.++.+.+......... +....+.+|||||+..+..++..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            58999999999999999999887765444444433333333332 13568999999999999888888899999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCH-HHHHHHHH------hcCCeEEEeecCCCCChHHH
Q 030856           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI-EEGEAKSR------ELNVMFIETSAKAGFNIKGC  162 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~-~~~~~~~~------~~~~~~~~~S~~~~~~v~~~  162 (170)
                      |+++....+. ...+..+..   .+.|+++|+||+|+........ .....+..      ..+++++++|+++++|++++
T Consensus        82 d~~~~~~~~~-~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887          82 AADDGVMPQT-IEAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             ECCCCccHHH-HHHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence            9987432111 111222222   4689999999999864321111 11111111      12368999999999999999


Q ss_pred             HHHHHhh
Q 030856          163 SPTIRRL  169 (170)
Q Consensus       163 ~~~l~~~  169 (170)
                      +++|.+.
T Consensus       158 ~~~l~~~  164 (168)
T cd01887         158 LEAILLL  164 (168)
T ss_pred             HHHHHHh
Confidence            9999864

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.95  E-value=3.1e-26  Score=163.03  Aligned_cols=159  Identities=15%  Similarity=0.122  Sum_probs=114.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh----hhhhhhh---hcCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----RSLIPSY---IRDS   82 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~~---~~~~   82 (170)
                      -.|+++|.|++|||||++++..........+.++.......+...+ ..++.+||+||..+-    ..+...+   +.++
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            4689999999999999999998654322222222233333333332 357899999996421    1233333   4579


Q ss_pred             cEEEEEEeCCCh---hhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCC
Q 030856           83 SVAVVVYDVASR---QSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF  157 (170)
Q Consensus        83 d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~--~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  157 (170)
                      +++++|+|+++.   ++++.+..|..++..+..  .+.|+++|+||+|+..... ..+..+.+++..+.+++++||++++
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~  315 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGE  315 (329)
T ss_pred             CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCc
Confidence            999999999976   678888888777766532  4789999999999865433 2344556666778899999999999


Q ss_pred             ChHHHHHHHHhhC
Q 030856          158 NIKGCSPTIRRLI  170 (170)
Q Consensus       158 ~v~~~~~~l~~~i  170 (170)
                      |+++++++|.+.+
T Consensus       316 GI~eL~~~I~~~l  328 (329)
T TIGR02729       316 GLDELLYALAELL  328 (329)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998764

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.95  E-value=2.4e-26  Score=164.97  Aligned_cols=154  Identities=19%  Similarity=0.177  Sum_probs=111.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh---------hhhhhhhhhh
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLIPSYI   79 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~~   79 (170)
                      .++|+++|.+|+|||||+|++.+........+..+.+.....+..++. ..+.+|||+|..         .+... ...+
T Consensus       189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~t-le~~  266 (351)
T TIGR03156       189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRAT-LEEV  266 (351)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHH-HHHH
Confidence            489999999999999999999997654333333344555555555332 478999999962         22222 2347


Q ss_pred             cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCCh
Q 030856           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (170)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v  159 (170)
                      .++|++++|+|++++.+.+....|...+......+.|+++|+||+|+.....+     .... ....+++++||++|.|+
T Consensus       267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v-----~~~~-~~~~~~i~iSAktg~GI  340 (351)
T TIGR03156       267 READLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRI-----ERLE-EGYPEAVFVSAKTGEGL  340 (351)
T ss_pred             HhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhH-----HHHH-hCCCCEEEEEccCCCCH
Confidence            89999999999999888877766665555544357899999999998643221     1111 22346899999999999


Q ss_pred             HHHHHHHHhhC
Q 030856          160 KGCSPTIRRLI  170 (170)
Q Consensus       160 ~~~~~~l~~~i  170 (170)
                      ++++++|.+.+
T Consensus       341 ~eL~~~I~~~~  351 (351)
T TIGR03156       341 DLLLEAIAERL  351 (351)
T ss_pred             HHHHHHHHhhC
Confidence            99999998754

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.95  E-value=3.7e-26  Score=147.85  Aligned_cols=147  Identities=20%  Similarity=0.240  Sum_probs=110.1

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh------hhhhhhc--CCcEE
Q 030856           14 FLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIPSYIR--DSSVA   85 (170)
Q Consensus        14 i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~--~~d~~   85 (170)
                      ++|.+|+|||||++++.+........+..+.+.....+..++  ..+.+|||||...+..      +...++.  ++|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998865544455555555555555554  4789999999876554      2455554  89999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      ++|+|.++++...   .++..+..   .+.|+++|+||+|+.+...+..+ .+.++...+++++++|+.++.|+++++++
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~~~  151 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELKDA  151 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence            9999998765432   33333332   36899999999999765544433 45677778899999999999999999999


Q ss_pred             HHhh
Q 030856          166 IRRL  169 (170)
Q Consensus       166 l~~~  169 (170)
                      +.+.
T Consensus       152 l~~~  155 (158)
T cd01879         152 IAEL  155 (158)
T ss_pred             HHHH
Confidence            9864

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.94  E-value=4.8e-26  Score=152.13  Aligned_cols=147  Identities=17%  Similarity=0.236  Sum_probs=102.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc--CCCCCCc------------cceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhh
Q 030856           10 YKLVFLGDQSVGKTSIITRFMY--DKFDNTY------------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI   75 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~   75 (170)
                      .+|+++|.+++|||||+++++.  +.+...+            .++.+.+.......+.+....+.+|||||++++....
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            5899999999999999999997  3333221            1223333444444444556789999999999999999


Q ss_pred             hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc-CHHHHHHHHH-------hcCCe
Q 030856           76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSR-------ELNVM  147 (170)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~  147 (170)
                      ..++.++|++++|+|+++.. +.....++..+..   .++|+++|+||+|+...+.. ..++...+..       ..+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            99999999999999998732 2222333333322   46899999999998653321 2334444432       23679


Q ss_pred             EEEeecCCCCChH
Q 030856          148 FIETSAKAGFNIK  160 (170)
Q Consensus       148 ~~~~S~~~~~~v~  160 (170)
                      ++++||++|.|++
T Consensus       159 iv~~Sa~~g~~~~  171 (194)
T cd01891         159 VLYASAKNGWASL  171 (194)
T ss_pred             EEEeehhcccccc
Confidence            9999999997764

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.94  E-value=4.6e-26  Score=149.90  Aligned_cols=156  Identities=19%  Similarity=0.162  Sum_probs=109.3

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh----hhh---hhhhhcCCcEEE
Q 030856           14 FLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----RSL---IPSYIRDSSVAV   86 (170)
Q Consensus        14 i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~---~~~~~~~~d~~i   86 (170)
                      ++|++|+|||||++++.+........+..+.+........++ ...+.+||+||....    ..+   ....++++|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            589999999999999998864211122222222222333331 356899999996321    122   234577899999


Q ss_pred             EEEeCCCh------hhHHhHHHHHHHHHHhcC-------CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeec
Q 030856           87 VVYDVASR------QSFLNTSKWIDEVRTERG-------SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSA  153 (170)
Q Consensus        87 ~v~d~~~~------~~~~~~~~~~~~~~~~~~-------~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~  153 (170)
                      +|+|++++      .+++....|...+.....       .+.|+++|+||+|+..................+..++++|+
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA  159 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence            99999987      577787777777765432       37999999999998765444333233445556678999999


Q ss_pred             CCCCChHHHHHHHHhhC
Q 030856          154 KAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       154 ~~~~~v~~~~~~l~~~i  170 (170)
                      +++.|++++++++.+.+
T Consensus       160 ~~~~gl~~l~~~l~~~~  176 (176)
T cd01881         160 KTEEGLDELIRAIYELL  176 (176)
T ss_pred             hhhcCHHHHHHHHHhhC
Confidence            99999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.94  E-value=3.9e-27  Score=143.94  Aligned_cols=152  Identities=24%  Similarity=0.348  Sum_probs=126.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      ++.+.++|-.++|||||+|....+.+.....|+.+.+....    ....+.+.+||.||++.++++|+.|.+++++++||
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~----tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEe----ccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            57899999999999999999999888888889988766553    34567899999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhc--------CCeEEEeecCCCCCh
Q 030856           89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL--------NVMFIETSAKAGFNI  159 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~--------~~~~~~~S~~~~~~v  159 (170)
                      +|+++++.+...+..+..+..... .++|+++++||.|+.++-.  .   ..+..+.        .+-.|.+|+++..|+
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~--~---~~li~rmgL~sitdREvcC~siScke~~Ni  170 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS--K---IALIERMGLSSITDREVCCFSISCKEKVNI  170 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc--H---HHHHHHhCccccccceEEEEEEEEcCCccH
Confidence            999999988888887777665544 7899999999999865322  1   2223333        346899999999999


Q ss_pred             HHHHHHHHhh
Q 030856          160 KGCSPTIRRL  169 (170)
Q Consensus       160 ~~~~~~l~~~  169 (170)
                      +-+..||++.
T Consensus       171 d~~~~Wli~h  180 (186)
T KOG0075|consen  171 DITLDWLIEH  180 (186)
T ss_pred             HHHHHHHHHH
Confidence            9999999864

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.94  E-value=2.2e-26  Score=142.03  Aligned_cols=163  Identities=23%  Similarity=0.507  Sum_probs=142.7

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   84 (170)
                      .+...++|.++|++..|||||+-++.+..++.++..+.+.++..+++.+.+..+.+.|||.+|++++..+.....+.+-+
T Consensus        16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva   95 (205)
T KOG1673|consen   16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA   95 (205)
T ss_pred             ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence            44567999999999999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC-----cccCHHHHHHHHHhcCCeEEEeecCCCCCh
Q 030856           85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK-----RQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (170)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v  159 (170)
                      ++|+||++.++++..+..|+++.+......+| ++|++|.|..-.     ++.-..+++.+|+..+.+.+.||+..+.|+
T Consensus        96 IlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv  174 (205)
T KOG1673|consen   96 ILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINV  174 (205)
T ss_pred             EEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccH
Confidence            99999999999999999999998776654455 567999997421     222245678888889999999999999999


Q ss_pred             HHHHHHHHh
Q 030856          160 KGCSPTIRR  168 (170)
Q Consensus       160 ~~~~~~l~~  168 (170)
                      ..+|.-+.-
T Consensus       175 ~KIFK~vlA  183 (205)
T KOG1673|consen  175 QKIFKIVLA  183 (205)
T ss_pred             HHHHHHHHH
Confidence            999987654

>TIGR00436 era GTP-binding protein Era

Probab=99.94  E-value=2.6e-25  Score=155.33  Aligned_cols=152  Identities=17%  Similarity=0.115  Sum_probs=103.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh--------hhhhhhhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR--------SLIPSYIRD   81 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~~   81 (170)
                      +|+++|.+|+|||||+|+|.+.... .+..+..+.+........++  .++.+|||||.....        .....++..
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            6899999999999999999998754 22222222222222222222  468999999965321        123445789


Q ss_pred             CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCCChH
Q 030856           82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIK  160 (170)
Q Consensus        82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~  160 (170)
                      +|++++|+|++++.+.+  ..++..+..   .+.|+++|+||+|+...... .+....++...+. +++++||++|.|++
T Consensus        80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gi~  153 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDNTS  153 (270)
T ss_pred             CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence            99999999999876554  333333332   36899999999998643222 2344455555555 89999999999999


Q ss_pred             HHHHHHHhhC
Q 030856          161 GCSPTIRRLI  170 (170)
Q Consensus       161 ~~~~~l~~~i  170 (170)
                      +++++|.+.+
T Consensus       154 ~L~~~l~~~l  163 (270)
T TIGR00436       154 FLAAFIEVHL  163 (270)
T ss_pred             HHHHHHHHhC
Confidence            9999998753

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK15494 era GTPase Era; Provisional

Probab=99.94  E-value=5e-25  Score=157.89  Aligned_cols=155  Identities=21%  Similarity=0.312  Sum_probs=105.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCC-CccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh-hhh-------hh
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-RSL-------IP   76 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~-------~~   76 (170)
                      ..+..+|+++|.+|+|||||+|++.+..+.. +..+..+.+.....+..++  .++.+|||||..+. ..+       ..
T Consensus        49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~  126 (339)
T PRK15494         49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAW  126 (339)
T ss_pred             ccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence            3456799999999999999999999887642 1222222233333344444  46899999997432 211       12


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC--CeEEEeec
Q 030856           77 SYIRDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSA  153 (170)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~  153 (170)
                      ..+.++|++++|+|..+  ++.... .|+..+..   .+.|.++|+||+|+...   ...++.+.+...+  ..++++||
T Consensus       127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSA  198 (339)
T PRK15494        127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISA  198 (339)
T ss_pred             HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEec
Confidence            34679999999999764  444543 34444433   24677889999998543   2345555555544  58999999


Q ss_pred             CCCCChHHHHHHHHhhC
Q 030856          154 KAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       154 ~~~~~v~~~~~~l~~~i  170 (170)
                      ++|.|+++++++|.+.+
T Consensus       199 ktg~gv~eL~~~L~~~l  215 (339)
T PRK15494        199 LSGKNIDGLLEYITSKA  215 (339)
T ss_pred             cCccCHHHHHHHHHHhC
Confidence            99999999999998753

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.94  E-value=1.6e-25  Score=138.47  Aligned_cols=114  Identities=32%  Similarity=0.560  Sum_probs=88.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC--CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFD--NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      ||+++|++|||||||++++.+....  ..+.+..+.+..............+.+||++|.+.+...+...+..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998876  22233334444444556667776799999999998888888889999999999


Q ss_pred             EeCCChhhHHhHHHH---HHHHHHhcCCCCeEEEEEeCCC
Q 030856           89 YDVASRQSFLNTSKW---IDEVRTERGSDVIIVLVGNKTD  125 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~vvv~nK~D  125 (170)
                      ||++++++++.+..+   +..+.... .++|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence            999999999997544   55555443 5699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.94  E-value=5.4e-25  Score=162.08  Aligned_cols=148  Identities=21%  Similarity=0.216  Sum_probs=111.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh--------hhhh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY   78 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   78 (170)
                      ..++|+++|++|+|||||+|++.+.... ....+..+.+.....+.+++  ..+.+|||||..++...        ...+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            4589999999999999999999987532 33345556677766776665  45789999997654332        2356


Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCC
Q 030856           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (170)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  158 (170)
                      ++.+|++++|+|.+++.+++..  |+..+..   .+.|+++|+||+|+...      +...+++..+.+++++|+++ .|
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g  347 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK  347 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence            7899999999999988776664  6555432   46899999999998543      22345667788999999998 58


Q ss_pred             hHHHHHHHHhh
Q 030856          159 IKGCSPTIRRL  169 (170)
Q Consensus       159 v~~~~~~l~~~  169 (170)
                      ++++++.|.+.
T Consensus       348 I~~~~~~L~~~  358 (442)
T TIGR00450       348 IKALVDLLTQK  358 (442)
T ss_pred             HHHHHHHHHHH
Confidence            99999888764

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.94  E-value=6.8e-25  Score=141.65  Aligned_cols=145  Identities=21%  Similarity=0.230  Sum_probs=105.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh--------hhhhhhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIR   80 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~   80 (170)
                      ++|+++|++|+|||||++++.+.... ....+..+.+.........  ..++.+|||||..++..        .....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            58999999999999999999987642 2223333334433344343  35789999999655432        1234567


Q ss_pred             CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 030856           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~  160 (170)
                      ++|++++|+|++++.+......+..      ..+.|+++|+||+|+.+....       .....+.+++++|++++.|++
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence            8999999999998777666544322      357999999999998754433       344456799999999999999


Q ss_pred             HHHHHHHhh
Q 030856          161 GCSPTIRRL  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      +++++|.+.
T Consensus       147 ~l~~~l~~~  155 (157)
T cd04164         147 ELKEALLEL  155 (157)
T ss_pred             HHHHHHHHh
Confidence            999999875

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01889 SelB_euk SelB subfamily

Probab=99.94  E-value=3.4e-25  Score=147.77  Aligned_cols=157  Identities=21%  Similarity=0.211  Sum_probs=101.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC----CCCC---Cccc--eeeeeeeEEEEE----------eCCeEEEEEEEecCChhh
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD----KFDN---TYQA--TIGIDFLSKTMY----------LEDRTVRLQLWDTAGQER   70 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~----~~~~---~~~~--~~~~~~~~~~~~----------~~~~~~~~~i~D~~g~~~   70 (170)
                      +||+++|++++|||||++++...    .+..   +..+  +....+....+.          ..+....+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999973    1111   1122  222222222222          123357899999999876


Q ss_pred             hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc--CHHHHHHHH-H-----
Q 030856           71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKS-R-----  142 (170)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~--~~~~~~~~~-~-----  142 (170)
                      +..........+|++++|+|+++.........+.  +...  .+.|+++++||+|+......  ..++.++.. .     
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            5444444566789999999998754333322221  1222  25799999999998643221  122222211 1     


Q ss_pred             -hcCCeEEEeecCCCCChHHHHHHHHhhC
Q 030856          143 -ELNVMFIETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       143 -~~~~~~~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                       ..+++++++||++|.|+++++++|.++|
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~  185 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLI  185 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence             2357899999999999999999998764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.94  E-value=6.8e-25  Score=145.81  Aligned_cols=154  Identities=22%  Similarity=0.214  Sum_probs=109.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccc----------------eeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQA----------------TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL   74 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   74 (170)
                      +|+++|.+|+|||||++++.+.........                ..+..........  ....+.+||+||...+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW--PDRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee--CCEEEEEEeCCCcHHHHHH
Confidence            589999999999999999998766543211                1112222222222  2467999999999988888


Q ss_pred             hhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc--CHHHHHHHHHh---------
Q 030856           75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSRE---------  143 (170)
Q Consensus        75 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~--~~~~~~~~~~~---------  143 (170)
                      +..++..+|++++|+|.+++..... ..++..+..   .+.|+++|+||+|+..+...  ..++.++..+.         
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE  154 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence            8899999999999999987654332 233333332   47999999999998753221  12333333333         


Q ss_pred             -----cCCeEEEeecCCCCChHHHHHHHHhhC
Q 030856          144 -----LNVMFIETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       144 -----~~~~~~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                           ...+++++||++|.|+++++++|.+.+
T Consensus       155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                 346899999999999999999998764

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2.4e-25  Score=135.18  Aligned_cols=156  Identities=24%  Similarity=0.371  Sum_probs=127.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .++++|+.+|-.++||||++.+|..... ....||+++++...+.    +.+++.+||.+|++..+..|++|+.+..++|
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglI   89 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   89 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence            4689999999999999999999997764 4457787766555443    5588999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHH-----HHhcCCeEEEeecCCCCChH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAK-----SRELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~v~  160 (170)
                      ||+|..+.+.+++.+..+..+..+. -.+.|+++.+||.|+..++.  +++.+.+     ++..++.+.++++.+|+++.
T Consensus        90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~--pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~  167 (180)
T KOG0071|consen   90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK--PQEIQDKLELERIRDRNWYVQPSCALSGDGLK  167 (180)
T ss_pred             EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC--HHHHHHHhccccccCCccEeeccccccchhHH
Confidence            9999999988999887766665443 36899999999999976543  3444433     34455688999999999999


Q ss_pred             HHHHHHHhh
Q 030856          161 GCSPTIRRL  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      |-|.||.+.
T Consensus       168 eglswlsnn  176 (180)
T KOG0071|consen  168 EGLSWLSNN  176 (180)
T ss_pred             HHHHHHHhh
Confidence            999999864

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.93  E-value=3.6e-25  Score=163.76  Aligned_cols=146  Identities=24%  Similarity=0.286  Sum_probs=109.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh--------hhhh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY   78 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   78 (170)
                      ..++|+++|.+|+|||||+|++.+.... ....+..+.++....+..++  .++.+|||||..++...        ...+
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            3589999999999999999999987642 33345555566666666655  56899999997654332        2346


Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCC
Q 030856           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (170)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  158 (170)
                      +.++|++++|+|++++.+++....|..      ..+.|+++|+||+|+.......        ...+.+++++|+++|.|
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G  357 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG  357 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence            789999999999998877765444432      3578999999999986533221        34456899999999999


Q ss_pred             hHHHHHHHHhh
Q 030856          159 IKGCSPTIRRL  169 (170)
Q Consensus       159 v~~~~~~l~~~  169 (170)
                      +++++++|.+.
T Consensus       358 I~~L~~~L~~~  368 (449)
T PRK05291        358 IDELREAIKEL  368 (449)
T ss_pred             HHHHHHHHHHH
Confidence            99999999864

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.93  E-value=5.5e-25  Score=142.27  Aligned_cols=137  Identities=17%  Similarity=0.215  Sum_probs=97.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh----hhhhhhhhhhcCCcEEE
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----RFRSLIPSYIRDSSVAV   86 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~d~~i   86 (170)
                      +|+++|.+|+|||||+|++.+.....  ..+.+.       .+...    .+|||||..    ++.......++++|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCccC--ccceEE-------EECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            79999999999999999988653211  111111       11111    269999962    22222233478999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC--eEEEeecCCCCChHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV--MFIETSAKAGFNIKGCSP  164 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~S~~~~~~v~~~~~  164 (170)
                      +|+|+++++++..  .|+..+    ..+.|+++++||+|+..   ...+...+++...++  +++++||++|+|++++|+
T Consensus        70 ~v~d~~~~~s~~~--~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~  140 (158)
T PRK15467         70 YVHGANDPESRLP--AGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD  140 (158)
T ss_pred             EEEeCCCcccccC--HHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence            9999998766533  343332    24678999999999854   335667777777775  999999999999999999


Q ss_pred             HHHhh
Q 030856          165 TIRRL  169 (170)
Q Consensus       165 ~l~~~  169 (170)
                      ++.+.
T Consensus       141 ~l~~~  145 (158)
T PRK15467        141 YLASL  145 (158)
T ss_pred             HHHHh
Confidence            99875

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.93  E-value=2.5e-24  Score=160.71  Aligned_cols=153  Identities=17%  Similarity=0.141  Sum_probs=107.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh--------hhhhhhhh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSY   78 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~   78 (170)
                      ...+|+++|.+|||||||+|++.+.... ....+..+.+.........+  ..+.+|||||.+.        +......+
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            3478999999999999999999987642 33445555555555555555  3588999999652        33445667


Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCC
Q 030856           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (170)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  158 (170)
                      +..+|++|+|+|++++.+... ..+...+..   .+.|+++|+||+|+....   .+..+.+....+ ..+++||++|.|
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~-~~~~iSA~~g~g  186 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALWSLGLG-EPHPVSALHGRG  186 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHHhcCCC-CeEEEEcCCCCC
Confidence            889999999999998755432 233333332   479999999999985421   122222222233 457999999999


Q ss_pred             hHHHHHHHHhhC
Q 030856          159 IKGCSPTIRRLI  170 (170)
Q Consensus       159 v~~~~~~l~~~i  170 (170)
                      +++++++|.+.+
T Consensus       187 i~eL~~~i~~~l  198 (472)
T PRK03003        187 VGDLLDAVLAAL  198 (472)
T ss_pred             cHHHHHHHHhhc
Confidence            999999998753

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.93  E-value=8.8e-25  Score=163.11  Aligned_cols=156  Identities=23%  Similarity=0.253  Sum_probs=110.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCCh----------hhhhhhh-
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRSLI-   75 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~-   75 (170)
                      ..++|+++|.+|+|||||+|++++.... .+..+..+.+.....+..++.  .+.+|||||.          +.+.... 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence            4689999999999999999999987642 344555666666666666664  4679999994          2233222 


Q ss_pred             hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc--CHHHHH-HHHHhcCCeEEEee
Q 030856           76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGE-AKSRELNVMFIETS  152 (170)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~--~~~~~~-~~~~~~~~~~~~~S  152 (170)
                      ..+++++|++++|+|++++.+++.+. ++..+..   .+.|+++|+||+|+.+....  ...+.. .+.....++++++|
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S  363 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS  363 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence            23578999999999999887777654 3333332   57899999999998643211  111121 22223346899999


Q ss_pred             cCCCCChHHHHHHHHhh
Q 030856          153 AKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       153 ~~~~~~v~~~~~~l~~~  169 (170)
                      |++|.|++++|+.+.+.
T Consensus       364 Ak~g~gv~~lf~~i~~~  380 (472)
T PRK03003        364 AKTGRAVDKLVPALETA  380 (472)
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999999999864

>PRK11058 GTPase HflX; Provisional

Probab=99.93  E-value=1.5e-24  Score=159.00  Aligned_cols=154  Identities=19%  Similarity=0.152  Sum_probs=107.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh--hhhh------hhhhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF--RSLI------PSYIRD   81 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~------~~~~~~   81 (170)
                      .+|+++|.+|+|||||+|+|.+........+..+.+.....+...+. ..+.+|||+|....  ...+      ...+..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            58999999999999999999987654333334444554445544442 26789999997321  1222      233678


Q ss_pred             CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCe-EEEeecCCCCChH
Q 030856           82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNIK  160 (170)
Q Consensus        82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~v~  160 (170)
                      +|++++|+|++++.+++.+..|...+......+.|+++|+||+|+......   ...  ....+.+ ++.+||++|.|++
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~---~~~--~~~~~~~~~v~ISAktG~GId  351 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP---RID--RDEENKPIRVWLSAQTGAGIP  351 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH---HHH--HHhcCCCceEEEeCCCCCCHH
Confidence            999999999999887777655544444433357999999999998642111   111  1123454 5889999999999


Q ss_pred             HHHHHHHhh
Q 030856          161 GCSPTIRRL  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      +++++|.+.
T Consensus       352 eL~e~I~~~  360 (426)
T PRK11058        352 LLFQALTER  360 (426)
T ss_pred             HHHHHHHHH
Confidence            999999865

>cd01894 EngA1 EngA1 subfamily

Probab=99.93  E-value=1.4e-24  Score=140.21  Aligned_cols=147  Identities=21%  Similarity=0.183  Sum_probs=100.9

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh--------hhhhhhcCCc
Q 030856           13 VFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIRDSS   83 (170)
Q Consensus        13 ~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~d   83 (170)
                      +++|.+|+|||||++++.+.... ....+..+.+........++  ..+.+|||||...+..        .....+..+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            47999999999999999987532 11222333333333333433  5789999999876443        3345678899


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCCChHHH
Q 030856           84 VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKGC  162 (170)
Q Consensus        84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~  162 (170)
                      ++++++|..++.+.... .....+..   .+.|+++|+||+|+......     .......+. +++++|++++.|++++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l  149 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL  149 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence            99999999865433332 22222222   35999999999998654322     223344566 8899999999999999


Q ss_pred             HHHHHhhC
Q 030856          163 SPTIRRLI  170 (170)
Q Consensus       163 ~~~l~~~i  170 (170)
                      +++|.+.+
T Consensus       150 ~~~l~~~~  157 (157)
T cd01894         150 LDAILELL  157 (157)
T ss_pred             HHHHHhhC
Confidence            99999865

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.93  E-value=3.8e-24  Score=156.09  Aligned_cols=154  Identities=18%  Similarity=0.128  Sum_probs=110.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh----hhhhhhhh---hcCCc
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPSY---IRDSS   83 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~d   83 (170)
                      .|+++|.|+||||||+++++..+......+.++.......+... ....+.+||+||..+    ...+...+   +.+++
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~~  238 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR  238 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence            79999999999999999999876432222222223222223332 134689999999632    22233334   45699


Q ss_pred             EEEEEEeCCCh---hhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCC
Q 030856           84 VAVVVYDVASR---QSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (170)
Q Consensus        84 ~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~--~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  158 (170)
                      ++++|+|+++.   ++++....|...+..+..  .+.|+++|+||+|+..    ..+..+.+.+..+.+++++||++++|
T Consensus       239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tgeG  314 (424)
T PRK12297        239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTGQG  314 (424)
T ss_pred             EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCCC
Confidence            99999999864   677777778777776543  4789999999999732    13445666666678999999999999


Q ss_pred             hHHHHHHHHhh
Q 030856          159 IKGCSPTIRRL  169 (170)
Q Consensus       159 v~~~~~~l~~~  169 (170)
                      +++++++|.+.
T Consensus       315 I~eL~~~L~~~  325 (424)
T PRK12297        315 LDELLYAVAEL  325 (424)
T ss_pred             HHHHHHHHHHH
Confidence            99999999864

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.93  E-value=3.2e-24  Score=163.02  Aligned_cols=156  Identities=19%  Similarity=0.209  Sum_probs=114.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCC-------CCCCcc------ceeeeeeeEEE--EEe---CCeEEEEEEEecCChhh
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDK-------FDNTYQ------ATIGIDFLSKT--MYL---EDRTVRLQLWDTAGQER   70 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~-------~~~~~~------~~~~~~~~~~~--~~~---~~~~~~~~i~D~~g~~~   70 (170)
                      -.|++++|+.++|||||+++++...       ....+.      +..+.++....  +.+   ++..+.+.+|||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            4689999999999999999998642       111111      12233333322  222   45668999999999999


Q ss_pred             hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC---e
Q 030856           71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV---M  147 (170)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~---~  147 (170)
                      +...+..++..+|++|+|+|+++..+.+....|.....    .++|+++|+||+|+....  ..+...++....++   .
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~  156 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE  156 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence            99999999999999999999998766666666544332    368999999999985432  12233455555665   4


Q ss_pred             EEEeecCCCCChHHHHHHHHhhC
Q 030856          148 FIETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       148 ~~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                      ++++||++|.|++++|++|.+.+
T Consensus       157 vi~vSAktG~GI~~Lle~I~~~l  179 (595)
T TIGR01393       157 AILASAKTGIGIEEILEAIVKRV  179 (595)
T ss_pred             EEEeeccCCCCHHHHHHHHHHhC
Confidence            89999999999999999998753

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.93  E-value=5.2e-24  Score=142.52  Aligned_cols=162  Identities=20%  Similarity=0.207  Sum_probs=106.3

Q ss_pred             CCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCCh----------hhh
Q 030856            2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERF   71 (170)
Q Consensus         2 ~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~   71 (170)
                      .+......++|+++|.+|+|||||++++.++.+...+.++.+.+........   ...+.+|||||.          +.+
T Consensus        17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~   93 (196)
T PRK00454         17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKW   93 (196)
T ss_pred             hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHH
Confidence            3455667899999999999999999999987644333334332222221211   257899999993          344


Q ss_pred             hhhhhhhhcCC---cEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc--CHHHHHHHHHhcCC
Q 030856           72 RSLIPSYIRDS---SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSRELNV  146 (170)
Q Consensus        72 ~~~~~~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~--~~~~~~~~~~~~~~  146 (170)
                      ......++..+   +++++++|.+++.+...  .++......  .+.|+++++||+|+....+.  ..+.+.......+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~  169 (196)
T PRK00454         94 QKLIEEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDD  169 (196)
T ss_pred             HHHHHHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCC
Confidence            44455555544   67888899876533322  111111122  36889999999998653322  12334444444467


Q ss_pred             eEEEeecCCCCChHHHHHHHHhhC
Q 030856          147 MFIETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       147 ~~~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                      .++++|++++.|+++++++|.+.+
T Consensus       170 ~~~~~Sa~~~~gi~~l~~~i~~~~  193 (196)
T PRK00454        170 EVILFSSLKKQGIDELRAAIAKWL  193 (196)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHh
Confidence            999999999999999999998753

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.93  E-value=6.5e-24  Score=160.72  Aligned_cols=154  Identities=20%  Similarity=0.185  Sum_probs=112.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .+..+|+++|++++|||||++++.+..+.....+..+.+.....+..++. ..+.||||||++.+..++...+..+|+++
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI  163 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV  163 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence            46689999999999999999999988776555555555555545544432 27899999999999999988899999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC---------CeEEEeecCCCC
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN---------VMFIETSAKAGF  157 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~S~~~~~  157 (170)
                      +|+|+++...-+... .+.   .....++|+++++||+|+.+.   ..++....+...+         .+++++||++|.
T Consensus       164 LVVda~dgv~~qT~e-~i~---~~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe  236 (587)
T TIGR00487       164 LVVAADDGVMPQTIE-AIS---HAKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD  236 (587)
T ss_pred             EEEECCCCCCHhHHH-HHH---HHHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence            999988642222211 112   122247899999999998542   2333333333222         479999999999


Q ss_pred             ChHHHHHHHHh
Q 030856          158 NIKGCSPTIRR  168 (170)
Q Consensus       158 ~v~~~~~~l~~  168 (170)
                      |+++++++|..
T Consensus       237 GI~eLl~~I~~  247 (587)
T TIGR00487       237 GIDELLDMILL  247 (587)
T ss_pred             ChHHHHHhhhh
Confidence            99999998853

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.93  E-value=4.3e-24  Score=143.48  Aligned_cols=159  Identities=18%  Similarity=0.145  Sum_probs=102.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC---CCccceeeeeeeEEEEEe-------------------------C--C----
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSKTMYL-------------------------E--D----   55 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~---~~~~~~~~~~~~~~~~~~-------------------------~--~----   55 (170)
                      ++|+++|+.|+|||||++++.+...+   .+.....+..........                         .  +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            58999999999999999999765221   111111111111000000                         0  0    


Q ss_pred             eEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc--C
Q 030856           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--S  133 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~--~  133 (170)
                      ...++.||||||++.+.......+..+|++++|+|++++.........+..+...  ...|+++|+||+|+......  .
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence            1267899999999988887788888999999999998742111111222222221  22478999999998643221  1


Q ss_pred             HHHHHHHHHhc---CCeEEEeecCCCCChHHHHHHHHhhC
Q 030856          134 IEEGEAKSREL---NVMFIETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       134 ~~~~~~~~~~~---~~~~~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                      .++.+++...+   +++++++||++|+|+++++++|.+.+
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            23344444432   56899999999999999999998754

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.92  E-value=1e-23  Score=141.48  Aligned_cols=157  Identities=21%  Similarity=0.326  Sum_probs=111.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCC-cEEEEEE
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS-SVAVVVY   89 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-d~~i~v~   89 (170)
                      +|+++|++|+|||+|+++|..+.+...+.++ ............+....+.+||+||+..++.....+++++ +++|+|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            6899999999999999999998776554333 2233222222223456799999999999999889999998 9999999


Q ss_pred             eCCCh-hhHHhHHHHHHHHHHh---cCCCCeEEEEEeCCCCCCCcccC------HHHHHHHHH-----------------
Q 030856           90 DVASR-QSFLNTSKWIDEVRTE---RGSDVIIVLVGNKTDLVEKRQVS------IEEGEAKSR-----------------  142 (170)
Q Consensus        90 d~~~~-~~~~~~~~~~~~~~~~---~~~~~~~vvv~nK~D~~~~~~~~------~~~~~~~~~-----------------  142 (170)
                      |+++. .++.....|+..+...   ..+++|+++++||+|+.......      ..++..+..                 
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~  160 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKE  160 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence            99987 6777777776655332   23589999999999986432210      000100000                 


Q ss_pred             ---------------hcCCeEEEeecCCCC-ChHHHHHHHHh
Q 030856          143 ---------------ELNVMFIETSAKAGF-NIKGCSPTIRR  168 (170)
Q Consensus       143 ---------------~~~~~~~~~S~~~~~-~v~~~~~~l~~  168 (170)
                                     ...+.++++|++.+. +++.+.+||.+
T Consensus       161 ~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~  202 (203)
T cd04105         161 SLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE  202 (203)
T ss_pred             ccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence                           113468899998876 69999999875

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.92  E-value=5.4e-24  Score=157.21  Aligned_cols=157  Identities=19%  Similarity=0.122  Sum_probs=106.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh----hhhh---hhhhhcCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSL---IPSYIRDS   82 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~---~~~~~~~~   82 (170)
                      -.|+++|.||+|||||+++|...+......+..+.......+...+  .++.+||+||..+    ...+   ....+.++
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera  237 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC  237 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence            5799999999999999999998654322223333333333343433  5799999999532    1111   22245789


Q ss_pred             cEEEEEEeCCCh----hhHHhHHHHHHHHHHhc-----------CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCe
Q 030856           83 SVAVVVYDVASR----QSFLNTSKWIDEVRTER-----------GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM  147 (170)
Q Consensus        83 d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~-----------~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~  147 (170)
                      |++|+|+|+++.    +.++.+..+..++..+.           ..+.|+++|+||+|+.+..... +.........+++
T Consensus       238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~-e~l~~~l~~~g~~  316 (500)
T PRK12296        238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA-EFVRPELEARGWP  316 (500)
T ss_pred             CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH-HHHHHHHHHcCCe
Confidence            999999999852    34555555555554432           1468999999999986544322 2233333455789


Q ss_pred             EEEeecCCCCChHHHHHHHHhh
Q 030856          148 FIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       148 ~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      ++++||+++.|+++++.+|.+.
T Consensus       317 Vf~ISA~tgeGLdEL~~~L~el  338 (500)
T PRK12296        317 VFEVSAASREGLRELSFALAEL  338 (500)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            9999999999999999999865

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.92  E-value=9.1e-24  Score=153.28  Aligned_cols=158  Identities=18%  Similarity=0.130  Sum_probs=110.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh-------hhhhhhhhcCCc
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRDSS   83 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~d   83 (170)
                      .|+|+|.||+|||||+|+|...+......|.++.......+...+ ...+.++|+||..+-       .......+..+|
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad  239 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR  239 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence            699999999999999999998765433334333333333333332 235899999996431       111223477899


Q ss_pred             EEEEEEeCC---ChhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC--CeEEEeecCCC
Q 030856           84 VAVVVYDVA---SRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAKAG  156 (170)
Q Consensus        84 ~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~--~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~~  156 (170)
                      ++++|+|++   +.+.++....|+..+..+..  .+.|+++|+||+|+.....+ .+..+.+.+..+  .+++++||+++
T Consensus       240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg  318 (390)
T PRK12298        240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASG  318 (390)
T ss_pred             EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCC
Confidence            999999988   45667777777777766532  46899999999998654333 234445555544  47899999999


Q ss_pred             CChHHHHHHHHhhC
Q 030856          157 FNIKGCSPTIRRLI  170 (170)
Q Consensus       157 ~~v~~~~~~l~~~i  170 (170)
                      .|+++++++|.+.+
T Consensus       319 ~GIdeLl~~I~~~L  332 (390)
T PRK12298        319 LGVKELCWDLMTFI  332 (390)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998753

>cd04163 Era Era subfamily

Probab=99.92  E-value=1.6e-23  Score=136.36  Aligned_cols=157  Identities=17%  Similarity=0.161  Sum_probs=103.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh--------hhhhhhh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR--------SLIPSYI   79 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~   79 (170)
                      ...+|+++|++|+|||||++++.+.................. .........+.+|||||.....        ......+
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIR-GIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL   80 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEE-EEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence            467899999999999999999998754311111111111111 1122234678999999965322        2334457


Q ss_pred             cCCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC-CeEEEeecCCCC
Q 030856           80 RDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGF  157 (170)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~  157 (170)
                      ..+|++++|+|++++.  ... ..+...+..   .+.|+++|+||+|+........+....+....+ .+++++|++++.
T Consensus        81 ~~~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  155 (168)
T cd04163          81 KDVDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGE  155 (168)
T ss_pred             HhCCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCC
Confidence            8899999999999762  222 222233332   258999999999986433333344444555443 599999999999


Q ss_pred             ChHHHHHHHHhhC
Q 030856          158 NIKGCSPTIRRLI  170 (170)
Q Consensus       158 ~v~~~~~~l~~~i  170 (170)
                      ++++++++|.+.+
T Consensus       156 ~~~~l~~~l~~~~  168 (168)
T cd04163         156 NVDELLEEIVKYL  168 (168)
T ss_pred             ChHHHHHHHHhhC
Confidence            9999999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK00089 era GTPase Era; Reviewed

Probab=99.92  E-value=1.8e-23  Score=147.82  Aligned_cols=157  Identities=18%  Similarity=0.203  Sum_probs=103.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCC-CccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh--------hhhhhh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR--------SLIPSY   78 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~   78 (170)
                      +.-.|+++|.+|+|||||+|++++..... +..+..+..........  ...++.+|||||.....        ......
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~--~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~   81 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE--DDAQIIFVDTPGIHKPKRALNRAMNKAAWSS   81 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc--CCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence            45679999999999999999999876642 22222221211111111  23679999999964322        233445


Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC-CeEEEeecCCCC
Q 030856           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGF  157 (170)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~  157 (170)
                      +..+|++++|+|++++  +.....++.....  ..+.|+++|+||+|+...........+.+....+ ..++++||+++.
T Consensus        82 ~~~~D~il~vvd~~~~--~~~~~~~i~~~l~--~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~  157 (292)
T PRK00089         82 LKDVDLVLFVVDADEK--IGPGDEFILEKLK--KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD  157 (292)
T ss_pred             HhcCCEEEEEEeCCCC--CChhHHHHHHHHh--hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence            7789999999999873  2222222222222  2368999999999986433333344555555545 589999999999


Q ss_pred             ChHHHHHHHHhhC
Q 030856          158 NIKGCSPTIRRLI  170 (170)
Q Consensus       158 ~v~~~~~~l~~~i  170 (170)
                      |+++++++|.+.+
T Consensus       158 gv~~L~~~L~~~l  170 (292)
T PRK00089        158 NVDELLDVIAKYL  170 (292)
T ss_pred             CHHHHHHHHHHhC
Confidence            9999999998753

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.92  E-value=1.4e-23  Score=138.54  Aligned_cols=150  Identities=19%  Similarity=0.237  Sum_probs=98.4

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCCh----------hhhhh
Q 030856            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRS   73 (170)
Q Consensus         4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~   73 (170)
                      ++..+.++|+++|.+|+|||||++++.+......+.++.+.+........++   .+.+|||||.          ..+..
T Consensus        13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~   89 (179)
T TIGR03598        13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK   89 (179)
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence            4557789999999999999999999998763333333333222222222222   5899999994          23444


Q ss_pred             hhhhhhcC---CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc--cCHHHHHHHHHhcC--C
Q 030856           74 LIPSYIRD---SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSRELN--V  146 (170)
Q Consensus        74 ~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~--~~~~~~~~~~~~~~--~  146 (170)
                      +...++..   ++++++|+|.+++-+.... ..+..+..   .+.|+++++||+|+..+..  ...+++++.....+  .
T Consensus        90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~  165 (179)
T TIGR03598        90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDP  165 (179)
T ss_pred             HHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCC
Confidence            44455553   5899999999875443333 22233322   3689999999999864322  22345555555554  4


Q ss_pred             eEEEeecCCCCChH
Q 030856          147 MFIETSAKAGFNIK  160 (170)
Q Consensus       147 ~~~~~S~~~~~~v~  160 (170)
                      .++++||++|+|++
T Consensus       166 ~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       166 SVQLFSSLKKTGID  179 (179)
T ss_pred             ceEEEECCCCCCCC
Confidence            89999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.92  E-value=3.9e-23  Score=153.25  Aligned_cols=155  Identities=20%  Similarity=0.189  Sum_probs=105.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh-----------
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-----------   74 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------   74 (170)
                      ...++|+++|.+|+|||||++++++.... ....+..+.+.....+..++.  .+.+|||||.......           
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence            34689999999999999999999986532 233344444444444444443  6899999996433221           


Q ss_pred             hhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHH-h----cCCeEE
Q 030856           75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-E----LNVMFI  149 (170)
Q Consensus        75 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~  149 (170)
                      ...+++.+|++++|+|++++.+.+... ++..+..   .+.|+++|+||+|+.+. ....++...... .    .+++++
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~vi  322 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKD-EKTREEFKKELRRKLPFLDFAPIV  322 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCC-HHHHHHHHHHHHHhcccCCCCceE
Confidence            134578999999999999876655543 2232222   46899999999998621 111122222221 1    246999


Q ss_pred             EeecCCCCChHHHHHHHHh
Q 030856          150 ETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus       150 ~~S~~~~~~v~~~~~~l~~  168 (170)
                      ++||++|.|++++|+++.+
T Consensus       323 ~~SA~~g~~v~~l~~~i~~  341 (429)
T TIGR03594       323 FISALTGQGVDKLLDAIDE  341 (429)
T ss_pred             EEeCCCCCCHHHHHHHHHH
Confidence            9999999999999999875

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01895 EngA2 EngA2 subfamily

Probab=99.92  E-value=5.5e-23  Score=134.74  Aligned_cols=155  Identities=21%  Similarity=0.222  Sum_probs=102.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh-----------hhh
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----------LIP   76 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~   76 (170)
                      .++|+++|.+|+|||||++++.+.... ....+..+..........++  ..+.+||+||..+...           ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            579999999999999999999987532 22223333333333333444  3578999999643210           112


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHH-HHHHhc----CCeEEEe
Q 030856           77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE-AKSREL----NVMFIET  151 (170)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~-~~~~~~----~~~~~~~  151 (170)
                      ..+.++|++++|+|++++.+..... ++..+..   .+.|+++++||+|+........+... ...+..    ..+++++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence            3467899999999999876654432 2222222   36899999999998765322222222 222322    3689999


Q ss_pred             ecCCCCChHHHHHHHHhh
Q 030856          152 SAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       152 S~~~~~~v~~~~~~l~~~  169 (170)
                      |++++.|++++++++.+.
T Consensus       156 Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         156 SALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eccCCCCHHHHHHHHHHh
Confidence            999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.3e-24  Score=136.47  Aligned_cols=159  Identities=21%  Similarity=0.280  Sum_probs=121.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCC-------CCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhh
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI   79 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   79 (170)
                      ...+.|+|+|..++|||||+.++.....       +....++.+.......+  .  ..++.+||.+|++..+++|..|+
T Consensus        15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v--~--~~~l~fwdlgGQe~lrSlw~~yY   90 (197)
T KOG0076|consen   15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV--C--NAPLSFWDLGGQESLRSLWKKYY   90 (197)
T ss_pred             hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee--c--cceeEEEEcCChHHHHHHHHHHH
Confidence            4468899999999999999998765322       12334555544444333  2  45799999999999999999999


Q ss_pred             cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCH-HHHH---HHHHhcCCeEEEeecC
Q 030856           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSI-EEGE---AKSRELNVMFIETSAK  154 (170)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~-~~~~---~~~~~~~~~~~~~S~~  154 (170)
                      ..++++|+++|+++++.|+.....++.+..... .++|+++.+||.|+.+...... ....   +...+..+++.++||.
T Consensus        91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal  170 (197)
T KOG0076|consen   91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSAL  170 (197)
T ss_pred             HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhh
Confidence            999999999999999999998877777665544 7899999999999865433211 1111   2223445799999999


Q ss_pred             CCCChHHHHHHHHhh
Q 030856          155 AGFNIKGCSPTIRRL  169 (170)
Q Consensus       155 ~~~~v~~~~~~l~~~  169 (170)
                      +|+||++..+|+.+.
T Consensus       171 ~gegv~egi~w~v~~  185 (197)
T KOG0076|consen  171 TGEGVKEGIEWLVKK  185 (197)
T ss_pred             hcccHHHHHHHHHHH
Confidence            999999999999875

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.92  E-value=1.9e-23  Score=158.63  Aligned_cols=151  Identities=21%  Similarity=0.181  Sum_probs=113.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC---CCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDK---FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      +.|+++|.+++|||||+++|.+..   ++.++.++.+.+.....+..++  ..+.+||+||++.|.......+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            479999999999999999999743   3344455566666555555555  68999999999999888888899999999


Q ss_pred             EEEeCCC---hhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCccc--CHHHHHHHHHhc----CCeEEEeecCCC
Q 030856           87 VVYDVAS---RQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV--SIEEGEAKSREL----NVMFIETSAKAG  156 (170)
Q Consensus        87 ~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~S~~~~  156 (170)
                      +|+|+++   +++.+.+    ..+. .  .++| +++|+||+|+.+....  ..++.+.+.+..    +++++++||++|
T Consensus        79 LVVDa~~G~~~qT~ehl----~il~-~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG  151 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHL----AVLD-L--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG  151 (581)
T ss_pred             EEEECCCCCcHHHHHHH----HHHH-H--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence            9999987   3343333    2222 2  3567 9999999998754432  233455555544    578999999999


Q ss_pred             CChHHHHHHHHhh
Q 030856          157 FNIKGCSPTIRRL  169 (170)
Q Consensus       157 ~~v~~~~~~l~~~  169 (170)
                      .|+++++++|.+.
T Consensus       152 ~GI~eL~~~L~~l  164 (581)
T TIGR00475       152 QGIGELKKELKNL  164 (581)
T ss_pred             CCchhHHHHHHHH
Confidence            9999999988653

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.91  E-value=3.6e-23  Score=159.02  Aligned_cols=155  Identities=18%  Similarity=0.206  Sum_probs=110.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeE--EEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLS--KTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   84 (170)
                      .+..+|+++|..++|||||++++..........+..+.+...  ..+...+....+.||||||++.|..++..++..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            466899999999999999999999876654433333333222  223333455789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHH-------HHhcC--CeEEEeecCC
Q 030856           85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAK-------SRELN--VMFIETSAKA  155 (170)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~S~~~  155 (170)
                      +|+|+|+++....+....+ ..+   ...++|+++++||+|+....   .++....       ...++  ++++++||++
T Consensus       322 aILVVDA~dGv~~QT~E~I-~~~---k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt  394 (742)
T CHL00189        322 AILIIAADDGVKPQTIEAI-NYI---QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQ  394 (742)
T ss_pred             EEEEEECcCCCChhhHHHH-HHH---HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence            9999999874222222211 122   22579999999999986532   2222221       22233  6899999999


Q ss_pred             CCChHHHHHHHHh
Q 030856          156 GFNIKGCSPTIRR  168 (170)
Q Consensus       156 ~~~v~~~~~~l~~  168 (170)
                      |.|+++++++|..
T Consensus       395 G~GIdeLle~I~~  407 (742)
T CHL00189        395 GTNIDKLLETILL  407 (742)
T ss_pred             CCCHHHHHHhhhh
Confidence            9999999999865

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.91  E-value=1.8e-23  Score=158.90  Aligned_cols=145  Identities=17%  Similarity=0.224  Sum_probs=109.1

Q ss_pred             cCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh------hhhhh--cCCcEEEE
Q 030856           16 GDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSYI--RDSSVAVV   87 (170)
Q Consensus        16 G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~d~~i~   87 (170)
                      |.+|+|||||+|++.+........+..+.+........++  .++.+|||||..++...      .+.++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999998876555556666666666666655  35799999998776543      23333  37899999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR  167 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (170)
                      |+|.++.+..   ..+..++.   ..+.|+++|+||+|+.+++.+. .+.+.+++..+++++++||++|.|++++++++.
T Consensus        79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~  151 (591)
T TIGR00437        79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR  151 (591)
T ss_pred             EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence            9999875332   22222222   2479999999999987655554 456788889999999999999999999999997


Q ss_pred             hh
Q 030856          168 RL  169 (170)
Q Consensus       168 ~~  169 (170)
                      +.
T Consensus       152 ~~  153 (591)
T TIGR00437       152 KA  153 (591)
T ss_pred             HH
Confidence            63

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>COG1159 Era GTPase [General function prediction only]

Probab=99.91  E-value=4.6e-23  Score=140.86  Aligned_cols=159  Identities=17%  Similarity=0.214  Sum_probs=108.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh--------hhhhh
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF--------RSLIP   76 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~   76 (170)
                      ..+.--|+++|.|++|||||+|++.+++.. .+..+.++.+......+.+  ..++.++||||...-        .....
T Consensus         3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~   80 (298)
T COG1159           3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAAR   80 (298)
T ss_pred             CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence            345667999999999999999999999876 4444444433333333333  457899999995432        22334


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCC
Q 030856           77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKA  155 (170)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~  155 (170)
                      ..+..+|+++||+|++++  +..-..++....+.  .+.|+++++||.|..............+...... .++++||++
T Consensus        81 ~sl~dvDlilfvvd~~~~--~~~~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~  156 (298)
T COG1159          81 SALKDVDLILFVVDADEG--WGPGDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALK  156 (298)
T ss_pred             HHhccCcEEEEEEecccc--CCccHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccc
Confidence            447789999999999864  22233332222222  3689999999999876555212333333333333 899999999


Q ss_pred             CCChHHHHHHHHhhC
Q 030856          156 GFNIKGCSPTIRRLI  170 (170)
Q Consensus       156 ~~~v~~~~~~l~~~i  170 (170)
                      |.|++.+.+.+.+++
T Consensus       157 g~n~~~L~~~i~~~L  171 (298)
T COG1159         157 GDNVDTLLEIIKEYL  171 (298)
T ss_pred             cCCHHHHHHHHHHhC
Confidence            999999999998764

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.91  E-value=7e-23  Score=158.63  Aligned_cols=154  Identities=17%  Similarity=0.172  Sum_probs=111.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ..+...|+++|..++|||||+++|....+.....+..+.+.....+.+++  ..+.||||||+..|..++...+..+|++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia  364 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV  364 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence            35678999999999999999999998776554444444444444444444  5789999999999999999899999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHH-------HHHHhcC--CeEEEeecCCC
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE-------AKSRELN--VMFIETSAKAG  156 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~-------~~~~~~~--~~~~~~S~~~~  156 (170)
                      |+|+|+++...-+....    +......++|+++++||+|+....   .+...       .++..++  ++++++||++|
T Consensus       365 ILVVdAddGv~~qT~e~----i~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG  437 (787)
T PRK05306        365 VLVVAADDGVMPQTIEA----INHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG  437 (787)
T ss_pred             EEEEECCCCCCHhHHHH----HHHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence            99999987422111111    122222579999999999985432   11111       1223333  68999999999


Q ss_pred             CChHHHHHHHHh
Q 030856          157 FNIKGCSPTIRR  168 (170)
Q Consensus       157 ~~v~~~~~~l~~  168 (170)
                      .|+++++++|..
T Consensus       438 ~GI~eLle~I~~  449 (787)
T PRK05306        438 EGIDELLEAILL  449 (787)
T ss_pred             CCchHHHHhhhh
Confidence            999999999863

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.91  E-value=1.5e-23  Score=139.41  Aligned_cols=159  Identities=23%  Similarity=0.267  Sum_probs=107.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCC------------------ccceeeeeeeEEEEEeCCeEEEEEEEecCChh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT------------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   69 (170)
                      +.++|+++|+.++|||||+++|.+......                  .....+.+..............+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            468999999999999999999996542211                  01112222222222212345689999999999


Q ss_pred             hhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc-CHHHHH-HHHHhc---
Q 030856           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGE-AKSREL---  144 (170)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~-~~~~~~-~~~~~~---  144 (170)
                      .+.......+..+|++|+|+|+.+...... ...+..+..   .++|+++|+||+|+...+.. ..++.. .+.+..   
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~  157 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN  157 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred             ceeecccceecccccceeeeeccccccccc-ccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence            998888888999999999999986533222 222233332   36889999999998722111 112222 333333   


Q ss_pred             ---CCeEEEeecCCCCChHHHHHHHHhhC
Q 030856          145 ---NVMFIETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       145 ---~~~~~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                         .++++++||.+|+|++++++.|.+.+
T Consensus       158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  158 GEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence               24899999999999999999998864

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.91  E-value=1.2e-22  Score=157.86  Aligned_cols=152  Identities=18%  Similarity=0.224  Sum_probs=111.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh----------hhh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL----------IPS   77 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~   77 (170)
                      ++++|+++|.+|+|||||+|++.+........+..+.+.....  ......++.+||+||..++...          ...
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~--~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~   79 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQ--FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEE--EEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence            4689999999999999999999987654332344444433333  3344567999999998765421          122


Q ss_pred             hh--cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCC
Q 030856           78 YI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA  155 (170)
Q Consensus        78 ~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  155 (170)
                      ++  ..+|++++|+|.++.++-.   .+..++..   .+.|+++++||+|+.+.+... ...+++.+..|++++++|+++
T Consensus        80 ~l~~~~aD~vI~VvDat~ler~l---~l~~ql~e---~giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~  152 (772)
T PRK09554         80 YILSGDADLLINVVDASNLERNL---YLTLQLLE---LGIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTR  152 (772)
T ss_pred             HHhccCCCEEEEEecCCcchhhH---HHHHHHHH---cCCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeec
Confidence            32  4799999999999865432   23333332   369999999999987655553 556788889999999999999


Q ss_pred             CCChHHHHHHHHh
Q 030856          156 GFNIKGCSPTIRR  168 (170)
Q Consensus       156 ~~~v~~~~~~l~~  168 (170)
                      ++|++++.+.+.+
T Consensus       153 g~GIdeL~~~I~~  165 (772)
T PRK09554        153 GRGIEALKLAIDR  165 (772)
T ss_pred             CCCHHHHHHHHHH
Confidence            9999999998865

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.91  E-value=9.9e-23  Score=155.06  Aligned_cols=157  Identities=18%  Similarity=0.191  Sum_probs=111.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC--C-----CC------ccceeeeeeeEEE--EEe---CCeEEEEEEEecCChh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKF--D-----NT------YQATIGIDFLSKT--MYL---EDRTVRLQLWDTAGQE   69 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~--~-----~~------~~~~~~~~~~~~~--~~~---~~~~~~~~i~D~~g~~   69 (170)
                      +-.+++++|+.++|||||+++++....  .     ..      .....+.++....  +.+   ++..+.+.+|||||+.
T Consensus         6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~   85 (600)
T PRK05433          6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV   85 (600)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence            446899999999999999999986321  1     00      0112222222222  222   4557899999999999


Q ss_pred             hhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC---
Q 030856           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV---  146 (170)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~---  146 (170)
                      ++...+..++..+|++|+|+|+++....+....|....    ..++|+++|+||+|+.....  .....++....++   
T Consensus        86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~~~  159 (600)
T PRK05433         86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGIDAS  159 (600)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCCcc
Confidence            99999999999999999999999865555555553322    24689999999999854321  2223344444555   


Q ss_pred             eEEEeecCCCCChHHHHHHHHhhC
Q 030856          147 MFIETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       147 ~~~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                      .++++||++|.|+++++++|.+.+
T Consensus       160 ~vi~iSAktG~GI~~Ll~~I~~~l  183 (600)
T PRK05433        160 DAVLVSAKTGIGIEEVLEAIVERI  183 (600)
T ss_pred             eEEEEecCCCCCHHHHHHHHHHhC
Confidence            389999999999999999998753

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=1.2e-22  Score=150.90  Aligned_cols=146  Identities=20%  Similarity=0.163  Sum_probs=103.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh--------hhhhhhhhhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSYIR   80 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~   80 (170)
                      .+|+++|.+|+|||||+|++.+.... ....+..+.+........++  ..+.+|||||...        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            57999999999999999999987642 22234444455555555555  6799999999876        2333455678


Q ss_pred             CCcEEEEEEeCCChhhHH--hHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCC
Q 030856           81 DSSVAVVVYDVASRQSFL--NTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGF  157 (170)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~  157 (170)
                      ++|++++|+|.+++.+..  .+..|+..      .+.|+++|+||+|..+.    .+...++ ...++ .++++||++|.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~------~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILRK------SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence            999999999998753322  22333322      26899999999996431    1222222 34566 58999999999


Q ss_pred             ChHHHHHHHHh
Q 030856          158 NIKGCSPTIRR  168 (170)
Q Consensus       158 ~v~~~~~~l~~  168 (170)
                      |++++++++.+
T Consensus       149 gv~~l~~~I~~  159 (435)
T PRK00093        149 GIGDLLDAILE  159 (435)
T ss_pred             CHHHHHHHHHh
Confidence            99999999875

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=1.5e-23  Score=133.61  Aligned_cols=162  Identities=31%  Similarity=0.539  Sum_probs=141.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ....++++++|..|.||||+.++...+.+...+.++.+.+........+...+++..|||.|++.+..+...++-+....
T Consensus         7 ~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcA   86 (216)
T KOG0096|consen    7 QGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCA   86 (216)
T ss_pred             ccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEeccee
Confidence            34679999999999999999999999999999999999988888776555579999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      |++||++..-++.++..|...+.+.+ .++|+++++||.|... +++ ......+-+..++.+++.|++.+.|.+.-|-|
T Consensus        87 iimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~-r~~-k~k~v~~~rkknl~y~~iSaksn~NfekPFl~  163 (216)
T KOG0096|consen   87 IIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKA-RKV-KAKPVSFHRKKNLQYYEISAKSNYNFERPFLW  163 (216)
T ss_pred             EEEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccc-ccc-ccccceeeecccceeEEeecccccccccchHH
Confidence            99999999999999999999998877 4699999999999754 222 12334456677899999999999999999999


Q ss_pred             HHhhC
Q 030856          166 IRRLI  170 (170)
Q Consensus       166 l~~~i  170 (170)
                      +++.+
T Consensus       164 LarKl  168 (216)
T KOG0096|consen  164 LARKL  168 (216)
T ss_pred             Hhhhh
Confidence            98764

>cd00880 Era_like Era (E

Probab=99.90  E-value=9.3e-23  Score=131.71  Aligned_cols=152  Identities=18%  Similarity=0.159  Sum_probs=104.0

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh-------hhhhhhcCCcEE
Q 030856           14 FLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIPSYIRDSSVA   85 (170)
Q Consensus        14 i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~d~~   85 (170)
                      ++|++|+|||||++++.+.... ....+..+............ ...+.+||+||......       ....++..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999986554 22223322233333322221 45799999999765433       344578899999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHH---HHHHHHHhcCCeEEEeecCCCCChHHH
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE---EGEAKSRELNVMFIETSAKAGFNIKGC  162 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~S~~~~~~v~~~  162 (170)
                      ++++|.+++....... +.....   ..+.|+++|+||+|+.........   .........+++++++|++++.|++++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            9999999876655544 222222   257999999999998754433221   122333445679999999999999999


Q ss_pred             HHHHHhhC
Q 030856          163 SPTIRRLI  170 (170)
Q Consensus       163 ~~~l~~~i  170 (170)
                      ++++.+.+
T Consensus       156 ~~~l~~~~  163 (163)
T cd00880         156 REALIEAL  163 (163)
T ss_pred             HHHHHhhC
Confidence            99998764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.90  E-value=2.6e-22  Score=148.89  Aligned_cols=149  Identities=21%  Similarity=0.189  Sum_probs=105.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCCh--------hhhhhhhhhhhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ--------ERFRSLIPSYIRD   81 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~~~~~~~~   81 (170)
                      +|+++|.+|+|||||+|++.+.... ....+..+.+.........+  ..+.+|||||.        ..+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            5899999999999999999987642 22234444445455555544  46999999995        3445556667899


Q ss_pred             CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCCChH
Q 030856           82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIK  160 (170)
Q Consensus        82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~  160 (170)
                      +|++++|+|..++.+... ..+...+.+   .+.|+++|+||+|.......    .. .....++ +++++||.+|.|++
T Consensus        79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~-~~~~lg~~~~~~vSa~~g~gv~  149 (429)
T TIGR03594        79 ADVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----AA-EFYSLGFGEPIPISAEHGRGIG  149 (429)
T ss_pred             CCEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----HH-HHHhcCCCCeEEEeCCcCCChH
Confidence            999999999986533222 112222222   36899999999998654322    11 2345676 89999999999999


Q ss_pred             HHHHHHHhhC
Q 030856          161 GCSPTIRRLI  170 (170)
Q Consensus       161 ~~~~~l~~~i  170 (170)
                      ++++++.+.+
T Consensus       150 ~ll~~i~~~l  159 (429)
T TIGR03594       150 DLLDAILELL  159 (429)
T ss_pred             HHHHHHHHhc
Confidence            9999998653

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.89  E-value=1.6e-22  Score=123.19  Aligned_cols=160  Identities=21%  Similarity=0.278  Sum_probs=123.8

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   84 (170)
                      ...+++||+++|-.++|||||++.|.+... ....|+.+++......   ...+++.+||.+|+...+..|..|+.+.|+
T Consensus        13 ~t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~k~v~~---~g~f~LnvwDiGGqr~IRpyWsNYyenvd~   88 (185)
T KOG0074|consen   13 RTRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNTKKVEY---DGTFHLNVWDIGGQRGIRPYWSNYYENVDG   88 (185)
T ss_pred             CCcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcceEEEee---cCcEEEEEEecCCccccchhhhhhhhccce
Confidence            446789999999999999999999887653 4446677665554443   245789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHH---HHHHhcCCeEEEeecCCCCChH
Q 030856           85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGE---AKSRELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~---~~~~~~~~~~~~~S~~~~~~v~  160 (170)
                      +|||+|.+|...|+.....+.++..... ..+|+++.+||.|+..+..+.....+   ...+.+-+.+-+||+.+++|+.
T Consensus        89 lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~  168 (185)
T KOG0074|consen   89 LIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGST  168 (185)
T ss_pred             EEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCcc
Confidence            9999999999999988777777766544 67999999999998654443211111   1112223578899999999999


Q ss_pred             HHHHHHHh
Q 030856          161 GCSPTIRR  168 (170)
Q Consensus       161 ~~~~~l~~  168 (170)
                      .-.+|+..
T Consensus       169 dg~~wv~s  176 (185)
T KOG0074|consen  169 DGSDWVQS  176 (185)
T ss_pred             Ccchhhhc
Confidence            98888865

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.89  E-value=6e-22  Score=142.70  Aligned_cols=150  Identities=24%  Similarity=0.301  Sum_probs=113.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhh--------hhh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------PSY   78 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~   78 (170)
                      .-++++++|.||+|||||+|+|.++... .+..|.++.++....+.++|  +++.+.||+|..+.....        ...
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            3589999999999999999999998665 56678888899999988877  778999999976554432        334


Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCC
Q 030856           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (170)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  158 (170)
                      ++.+|.+++|+|.+.+.+-....- +.    ....+.|+++|.||.|+..+......     ....+.+++.+|+++++|
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~~~-~~----~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~G  363 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDLAL-IE----LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEG  363 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhHHH-HH----hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccC
Confidence            789999999999998522222111 11    23467999999999999765442211     222344799999999999


Q ss_pred             hHHHHHHHHhh
Q 030856          159 IKGCSPTIRRL  169 (170)
Q Consensus       159 v~~~~~~l~~~  169 (170)
                      ++.+.+.|.+.
T Consensus       364 l~~L~~~i~~~  374 (454)
T COG0486         364 LDALREAIKQL  374 (454)
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.89  E-value=1.8e-21  Score=133.02  Aligned_cols=151  Identities=19%  Similarity=0.239  Sum_probs=101.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh-------hhhhhhhcCCc
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLIPSYIRDSS   83 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d   83 (170)
                      +|+++|++|+|||||++++.+........+..+.+.....+..++  ..+++||+||..+..       .....+++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            689999999999999999998764322222223333344444444  578999999964322       12345688999


Q ss_pred             EEEEEEeCCChh-hHHhHHHHHHHH----------------------------------------HHh------------
Q 030856           84 VAVVVYDVASRQ-SFLNTSKWIDEV----------------------------------------RTE------------  110 (170)
Q Consensus        84 ~~i~v~d~~~~~-~~~~~~~~~~~~----------------------------------------~~~------------  110 (170)
                      ++++|+|+++++ ..+.+...+...                                        .+.            
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998765 333333333211                                        000            


Q ss_pred             -----------c--CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhhC
Q 030856          111 -----------R--GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       111 -----------~--~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                                 .  ..-.|+++|+||+|+..     .++...+++.  ..++++||+++.|++++++.|.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                       0  01258999999999843     3444455543  4689999999999999999998754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.89  E-value=6.1e-22  Score=142.32  Aligned_cols=149  Identities=21%  Similarity=0.189  Sum_probs=107.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh---------hhhhhhhh
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIPSYI   79 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~   79 (170)
                      ..|+++|.||||||||+|+|.+++.. .+..|.++.+.......+.+.  .+.++||+|.+..         .......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            67999999999999999999998775 444566666766666666554  4899999995532         22344457


Q ss_pred             cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCCC
Q 030856           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFN  158 (170)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~  158 (170)
                      ..+|++|||+|....-+  .....+..+.+.  .+.|+++|+||+|-.     ..+........+|+ .++++||..|.|
T Consensus        82 ~eADvilfvVD~~~Git--~~D~~ia~~Lr~--~~kpviLvvNK~D~~-----~~e~~~~efyslG~g~~~~ISA~Hg~G  152 (444)
T COG1160          82 EEADVILFVVDGREGIT--PADEEIAKILRR--SKKPVILVVNKIDNL-----KAEELAYEFYSLGFGEPVPISAEHGRG  152 (444)
T ss_pred             HhCCEEEEEEeCCCCCC--HHHHHHHHHHHh--cCCCEEEEEEcccCc-----hhhhhHHHHHhcCCCCceEeehhhccC
Confidence            89999999999875322  222222222222  469999999999953     22333333445566 889999999999


Q ss_pred             hHHHHHHHHhh
Q 030856          159 IKGCSPTIRRL  169 (170)
Q Consensus       159 v~~~~~~l~~~  169 (170)
                      +.++++++.+.
T Consensus       153 i~dLld~v~~~  163 (444)
T COG1160         153 IGDLLDAVLEL  163 (444)
T ss_pred             HHHHHHHHHhh
Confidence            99999999875

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=1.3e-21  Score=145.42  Aligned_cols=155  Identities=20%  Similarity=0.154  Sum_probs=104.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCC-CCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh----------hh-h
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----------RS-L   74 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------~~-~   74 (170)
                      ...++|+++|.+|+|||||+|++++... .....+..+.+.....+..++  ..+.+|||||....          .. .
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            3569999999999999999999997653 233344444444444444444  45789999995321          11 1


Q ss_pred             hhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHH----HhcCCeEEE
Q 030856           75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS----RELNVMFIE  150 (170)
Q Consensus        75 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~  150 (170)
                      ...++..+|++|+|+|++++.+.+... ++..+..   .+.|+++|+||+|+.+.... .+....+.    ....+++++
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~~-~~~~~~~~~~l~~~~~~~i~~  323 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKTM-EEFKKELRRRLPFLDYAPIVF  323 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHHH-HHHHHHHHHhcccccCCCEEE
Confidence            223578899999999999876655432 2222222   36899999999998632211 11111111    123469999


Q ss_pred             eecCCCCChHHHHHHHHh
Q 030856          151 TSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus       151 ~S~~~~~~v~~~~~~l~~  168 (170)
                      +||++|.|++++++.+.+
T Consensus       324 ~SA~~~~gv~~l~~~i~~  341 (435)
T PRK00093        324 ISALTGQGVDKLLEAIDE  341 (435)
T ss_pred             EeCCCCCCHHHHHHHHHH
Confidence            999999999999998865

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.89  E-value=1.4e-21  Score=147.94  Aligned_cols=154  Identities=18%  Similarity=0.178  Sum_probs=102.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccc----eeeeeeeEEEEE------------eCCeEEEEEEEecCChhhh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA----TIGIDFLSKTMY------------LEDRTVRLQLWDTAGQERF   71 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~~~i~D~~g~~~~   71 (170)
                      +..-|+++|.+++|||||++++.+.........    +.+..+......            +......+.+|||||++.+
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            456799999999999999999998766433222    222222211110            0001123899999999999


Q ss_pred             hhhhhhhhcCCcEEEEEEeCCC---hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc------------CHHH
Q 030856           72 RSLIPSYIRDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV------------SIEE  136 (170)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~------------~~~~  136 (170)
                      ..++..++..+|++++|+|+++   +++++.+..    +..   .++|+++++||+|+......            ..+.
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~  155 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ  155 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence            9999999999999999999987   444444321    221   36899999999998632100            0000


Q ss_pred             ------------HHHHHH------------hc--CCeEEEeecCCCCChHHHHHHHHh
Q 030856          137 ------------GEAKSR------------EL--NVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus       137 ------------~~~~~~------------~~--~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                                  ...+..            .+  .++++++||++|+|+++++.+|..
T Consensus       156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~  213 (590)
T TIGR00491       156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG  213 (590)
T ss_pred             HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence                        001111            11  358999999999999999998863

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.89  E-value=5.4e-21  Score=121.77  Aligned_cols=157  Identities=23%  Similarity=0.304  Sum_probs=118.0

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCC--------CCcc----ceeeeeeeEEEEEeCCeEEEEEEEecCChhhh
Q 030856            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFD--------NTYQ----ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (170)
Q Consensus         4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~--------~~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   71 (170)
                      .......||++.|+.++||||+++++......        .++.    .|...++.....   +....+++++|||++++
T Consensus         5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~---~~~~~v~LfgtPGq~RF   81 (187)
T COG2229           5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL---DEDTGVHLFGTPGQERF   81 (187)
T ss_pred             cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE---cCcceEEEecCCCcHHH
Confidence            44567899999999999999999999987641        1111    122222222222   22357899999999999


Q ss_pred             hhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhc--CCeEE
Q 030856           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL--NVMFI  149 (170)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~  149 (170)
                      .-+|..+++++.+.|+++|.+.+..+ .....+..+....  .+|+++++||.|+...+  ..+..++.....  .++++
T Consensus        82 ~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~--ppe~i~e~l~~~~~~~~vi  156 (187)
T COG2229          82 KFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDAL--PPEKIREALKLELLSVPVI  156 (187)
T ss_pred             HHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCCC--CHHHHHHHHHhccCCCcee
Confidence            99999999999999999999998887 4444444444432  29999999999997644  445655555554  78999


Q ss_pred             EeecCCCCChHHHHHHHHh
Q 030856          150 ETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus       150 ~~S~~~~~~v~~~~~~l~~  168 (170)
                      +.++.++++..+.++.+..
T Consensus       157 ~~~a~e~~~~~~~L~~ll~  175 (187)
T COG2229         157 EIDATEGEGARDQLDVLLL  175 (187)
T ss_pred             eeecccchhHHHHHHHHHh
Confidence            9999999999998888764

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.89  E-value=2.7e-21  Score=150.56  Aligned_cols=153  Identities=19%  Similarity=0.129  Sum_probs=103.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh--------hhhhhhh
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPS   77 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~   77 (170)
                      ....+|+++|.+|+|||||+|++++.... ....+..+.+........++  ..+.+|||||.+.        +......
T Consensus       273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~  350 (712)
T PRK09518        273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQI  350 (712)
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence            34578999999999999999999987542 23334444444444444444  4688999999653        3344455


Q ss_pred             hhcCCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCC
Q 030856           78 YIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG  156 (170)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  156 (170)
                      ++..+|++++|+|.++.-  ... ..|...+..   .+.|+++|+||+|+....   ......+....+ ..+++||++|
T Consensus       351 ~~~~aD~iL~VvDa~~~~--~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~---~~~~~~~~lg~~-~~~~iSA~~g  421 (712)
T PRK09518        351 AVSLADAVVFVVDGQVGL--TSTDERIVRMLRR---AGKPVVLAVNKIDDQASE---YDAAEFWKLGLG-EPYPISAMHG  421 (712)
T ss_pred             HHHhCCEEEEEEECCCCC--CHHHHHHHHHHHh---cCCCEEEEEECcccccch---hhHHHHHHcCCC-CeEEEECCCC
Confidence            688999999999998632  222 233344432   479999999999975421   111222222222 4579999999


Q ss_pred             CChHHHHHHHHhhC
Q 030856          157 FNIKGCSPTIRRLI  170 (170)
Q Consensus       157 ~~v~~~~~~l~~~i  170 (170)
                      .|+++++++|.+.+
T Consensus       422 ~GI~eLl~~i~~~l  435 (712)
T PRK09518        422 RGVGDLLDEALDSL  435 (712)
T ss_pred             CCchHHHHHHHHhc
Confidence            99999999998753

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.89  E-value=1.5e-21  Score=151.95  Aligned_cols=154  Identities=21%  Similarity=0.254  Sum_probs=106.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChh----------hhhhh-h
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFRSL-I   75 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~-~   75 (170)
                      ..++|+++|.+|+|||||+|++++.... ....+..+.+.....+..++.  .+.+|||||..          .+..+ .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence            4589999999999999999999987642 233444445555555556654  46699999953          12221 1


Q ss_pred             hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHH-Hh----cCCeEEE
Q 030856           76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-RE----LNVMFIE  150 (170)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~-~~----~~~~~~~  150 (170)
                      ...++.+|++++|+|++++.+.+.... +..+..   .+.|+++|+||+|+.+...  .+..+... ..    ...++++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~  600 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN  600 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence            234688999999999998877766543 233322   4789999999999865322  12222211 11    1347899


Q ss_pred             eecCCCCChHHHHHHHHhh
Q 030856          151 TSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       151 ~S~~~~~~v~~~~~~l~~~  169 (170)
                      +||++|.|++++++.+.+.
T Consensus       601 iSAktg~gv~~L~~~i~~~  619 (712)
T PRK09518        601 LSAKTGWHTNRLAPAMQEA  619 (712)
T ss_pred             EECCCCCCHHHHHHHHHHH
Confidence            9999999999999998764

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.89  E-value=7.4e-22  Score=145.99  Aligned_cols=154  Identities=19%  Similarity=0.232  Sum_probs=101.4

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCC-------------------------------CCccceeeeeeeEEEEEe
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFD-------------------------------NTYQATIGIDFLSKTMYL   53 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~   53 (170)
                      ...+.++|+++|.+++|||||+++|++....                               .+..+..+.+.....+  
T Consensus         2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~--   79 (425)
T PRK12317          2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKF--   79 (425)
T ss_pred             CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEE--
Confidence            3467799999999999999999999843211                               0112333333333333  


Q ss_pred             CCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc--
Q 030856           54 EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--  131 (170)
Q Consensus        54 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~--  131 (170)
                      ....+++.+|||||++.+.......+..+|++++|+|++++.++.....+...+....+ ..|+++++||+|+.....  
T Consensus        80 ~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~~  158 (425)
T PRK12317         80 ETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-INQLIVAINKMDAVNYDEKR  158 (425)
T ss_pred             ecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-CCeEEEEEEccccccccHHH
Confidence            33456899999999988766555667899999999999863222222222222222221 246899999999864221  


Q ss_pred             --cCHHHHHHHHHhcC-----CeEEEeecCCCCChHH
Q 030856          132 --VSIEEGEAKSRELN-----VMFIETSAKAGFNIKG  161 (170)
Q Consensus       132 --~~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~  161 (170)
                        ...++...+....+     ++++++||++|+|+++
T Consensus       159 ~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~  195 (425)
T PRK12317        159 YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK  195 (425)
T ss_pred             HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence              11244555555554     4799999999999987

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.88  E-value=1.4e-21  Score=144.46  Aligned_cols=153  Identities=18%  Similarity=0.221  Sum_probs=103.4

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcC--CCC-----------------------------CCccceeeeeeeEEEEEeC
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYD--KFD-----------------------------NTYQATIGIDFLSKTMYLE   54 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~   54 (170)
                      ..+.++|+++|+.++|||||+++|+..  ...                             .+..+..+.+.....+  .
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~--~   81 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKF--E   81 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEE--c
Confidence            456799999999999999999999852  111                             0112233334443333  3


Q ss_pred             CeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc--
Q 030856           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--  131 (170)
Q Consensus        55 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~--  131 (170)
                      .....+.+||+||++++.......+..+|++++|+|++++++.... ..+...+.... ...|+++++||+|+.+..+  
T Consensus        82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~~  160 (426)
T TIGR00483        82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAINKMDSVNYDEEE  160 (426)
T ss_pred             cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEEEChhccCccHHH
Confidence            3456899999999998877666677899999999999987533211 11111222322 2357999999999864222  


Q ss_pred             --cCHHHHHHHHHhcC-----CeEEEeecCCCCChHH
Q 030856          132 --VSIEEGEAKSRELN-----VMFIETSAKAGFNIKG  161 (170)
Q Consensus       132 --~~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~  161 (170)
                        ...++.+++++..+     ++++++||++|.|+++
T Consensus       161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence              12345566666655     5899999999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=5.8e-23  Score=125.37  Aligned_cols=157  Identities=21%  Similarity=0.293  Sum_probs=120.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ++..+++++|-.|+|||+++.++.-++.. ...|+.+.....    +..+..++++||..|+...+..|+.|+.+.|++|
T Consensus        16 e~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve~----v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avI   90 (182)
T KOG0072|consen   16 EREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVET----VPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVI   90 (182)
T ss_pred             ccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCccc----cccccccceeeEccCcccccHHHHHHhcccceEE
Confidence            47899999999999999999888776653 335666544333    3346688999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHH----HHHHhcCCeEEEeecCCCCChHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGE----AKSRELNVMFIETSAKAGFNIKG  161 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~----~~~~~~~~~~~~~S~~~~~~v~~  161 (170)
                      +|+|.+|.+........+..+.++. -.+..+++++||.|....... .+...    .-.+.+-+.++++||.+|+|+++
T Consensus        91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~-~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~  169 (182)
T KOG0072|consen   91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTR-SEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP  169 (182)
T ss_pred             EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhH-HHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence            9999999988887766555554443 356889999999997542211 11111    12233346999999999999999


Q ss_pred             HHHHHHhh
Q 030856          162 CSPTIRRL  169 (170)
Q Consensus       162 ~~~~l~~~  169 (170)
                      ..+||.+.
T Consensus       170 ~~DWL~~~  177 (182)
T KOG0072|consen  170 AMDWLQRP  177 (182)
T ss_pred             HHHHHHHH
Confidence            99999864

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.88  E-value=1.9e-21  Score=142.79  Aligned_cols=161  Identities=20%  Similarity=0.160  Sum_probs=105.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCC---Cccceeeeeee--EEE------------EEe----CC------eEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFL--SKT------------MYL----ED------RTVR   59 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~---~~~~~~~~~~~--~~~------------~~~----~~------~~~~   59 (170)
                      .++++|+++|..++|||||+++|.+.....   +..+..+....  ...            ++.    ++      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            467999999999999999999997643211   11111111111  000            000    11      1357


Q ss_pred             EEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc--CHHHH
Q 030856           60 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEG  137 (170)
Q Consensus        60 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~--~~~~~  137 (170)
                      +.+||+||++.|...+......+|++++|+|++++.........+..+. .. ...|+++++||+|+.+....  ..++.
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~-~~-gi~~iIVvvNK~Dl~~~~~~~~~~~~i  159 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALE-II-GIKNIVIVQNKIDLVSKEKALENYEEI  159 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHH-Hc-CCCeEEEEEEccccCCHHHHHHHHHHH
Confidence            8999999999998888888889999999999986431122233333222 22 13468999999998653221  12344


Q ss_pred             HHHHHhc---CCeEEEeecCCCCChHHHHHHHHhh
Q 030856          138 EAKSREL---NVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       138 ~~~~~~~---~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      ..+....   +++++++||++|+|+++++++|.+.
T Consensus       160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~  194 (406)
T TIGR03680       160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKF  194 (406)
T ss_pred             HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHh
Confidence            4444433   5789999999999999999999864

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.88  E-value=2.7e-21  Score=120.50  Aligned_cols=136  Identities=21%  Similarity=0.283  Sum_probs=99.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCCh----hhhhhhhhhhhcCCcEEE
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----ERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----~~~~~~~~~~~~~~d~~i   86 (170)
                      ||+++|+.|+|||||+++|.+...  .+..|....            +.=.++||||.    ..+..........+|.++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~------------~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIE------------YYDNTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeE------------ecccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            799999999999999999998765  333333321            11245899993    334444455567899999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCCChHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~  165 (170)
                      ++.|++++.+.--     ..+...  -+.|++=|+||+|+.. ...+.+.++++.+..|+ .+|++|+.+|+|++++.++
T Consensus        69 ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~  140 (143)
T PF10662_consen   69 LLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY  140 (143)
T ss_pred             EEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence            9999997643211     111222  2578999999999863 24467888899999998 7899999999999999998


Q ss_pred             HHh
Q 030856          166 IRR  168 (170)
Q Consensus       166 l~~  168 (170)
                      |.+
T Consensus       141 L~~  143 (143)
T PF10662_consen  141 LEE  143 (143)
T ss_pred             HhC
Confidence            853

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.88  E-value=5e-21  Score=124.83  Aligned_cols=151  Identities=23%  Similarity=0.349  Sum_probs=97.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh----------hhhhhhhhhhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFRSLIPSYIR   80 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~~~~~   80 (170)
                      .|+++|.+|+|||||++.+.+........++.+.+........++   .+.+||+||..          .+......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            379999999999999999996555444444444333333333332   78999999943          23444444444


Q ss_pred             ---CCcEEEEEEeCCChhhH--HhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc--CHHHHHHHHH--hcCCeEEEe
Q 030856           81 ---DSSVAVVVYDVASRQSF--LNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSR--ELNVMFIET  151 (170)
Q Consensus        81 ---~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~--~~~~~~~~~~--~~~~~~~~~  151 (170)
                         ..+++++++|..++.+.  ..+..|+..      .+.|+++++||+|+......  .........+  ....+++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               35788999998765221  222333322      25899999999998543221  1122222222  334589999


Q ss_pred             ecCCCCChHHHHHHHHhhC
Q 030856          152 SAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       152 S~~~~~~v~~~~~~l~~~i  170 (170)
                      |++++.++++++++|.+.+
T Consensus       152 Sa~~~~~~~~l~~~l~~~~  170 (170)
T cd01876         152 SSLKGQGIDELRALIEKWL  170 (170)
T ss_pred             ecCCCCCHHHHHHHHHHhC
Confidence            9999999999999998864

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.88  E-value=4e-22  Score=146.08  Aligned_cols=168  Identities=23%  Similarity=0.301  Sum_probs=129.0

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhc
Q 030856            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (170)
Q Consensus         1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   80 (170)
                      |+.....+.+||+++|+.|+|||||+-++....+++...+-...-..+...+.  ..+..++.|++..++-+......++
T Consensus         1 ~~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtP--e~vpt~ivD~ss~~~~~~~l~~Eir   78 (625)
T KOG1707|consen    1 MSDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTP--ENVPTSIVDTSSDSDDRLCLRKEIR   78 (625)
T ss_pred             CCCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCc--CcCceEEEecccccchhHHHHHHHh
Confidence            66777889999999999999999999999998887654433322222222222  3356899999876666666677889


Q ss_pred             CCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcC--CCCeEEEEEeCCCCCCCcccCHHH-HHHHHHhcCC--eEEEeecC
Q 030856           81 DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEE-GEAKSRELNV--MFIETSAK  154 (170)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~--~~~~~vvv~nK~D~~~~~~~~~~~-~~~~~~~~~~--~~~~~S~~  154 (170)
                      .+|+++++|+++++++++.+ ..|+..+++..+  .+.|+|+|+||.|.......+.+. ...+...+.-  ..++|||+
T Consensus        79 kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~  158 (625)
T KOG1707|consen   79 KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSAL  158 (625)
T ss_pred             hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhh
Confidence            99999999999999999998 789999988775  579999999999987654443333 4444444442  67999999


Q ss_pred             CCCChHHHHHHHHhhC
Q 030856          155 AGFNIKGCSPTIRRLI  170 (170)
Q Consensus       155 ~~~~v~~~~~~l~~~i  170 (170)
                      +..++.++|.+..+.+
T Consensus       159 ~~~n~~e~fYyaqKaV  174 (625)
T KOG1707|consen  159 TLANVSELFYYAQKAV  174 (625)
T ss_pred             hhhhhHhhhhhhhhee
Confidence            9999999998876643

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.87  E-value=4.7e-21  Score=140.64  Aligned_cols=162  Identities=20%  Similarity=0.153  Sum_probs=103.3

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCC---CCccceeeeeeeE--EEE----------------EeC------CeE
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLS--KTM----------------YLE------DRT   57 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~---~~~~~~~~~~~~~--~~~----------------~~~------~~~   57 (170)
                      ...++++|+++|+.++|||||+.+|.+...+   .+..+..+.+...  ...                ..+      ...
T Consensus         5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (411)
T PRK04000          5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL   84 (411)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence            4456799999999999999999999654221   1111122222111  000                000      013


Q ss_pred             EEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc--CH
Q 030856           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SI  134 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~--~~  134 (170)
                      ..+.+|||||++++..........+|++++|+|++++. .-+. ...+..+.. . ...|+++|+||+|+.+....  ..
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t-~~~l~~l~~-~-~i~~iiVVlNK~Dl~~~~~~~~~~  161 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQT-KEHLMALDI-I-GIKNIVIVQNKIDLVSKERALENY  161 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhH-HHHHHHHHH-c-CCCcEEEEEEeeccccchhHHHHH
Confidence            57899999999888776666667789999999998642 1111 111222222 1 12368999999998653322  12


Q ss_pred             HHHHHHHHhc---CCeEEEeecCCCCChHHHHHHHHhh
Q 030856          135 EEGEAKSREL---NVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       135 ~~~~~~~~~~---~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      ++.+.++...   +.+++++||++|.|+++++++|.+.
T Consensus       162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~  199 (411)
T PRK04000        162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEE  199 (411)
T ss_pred             HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHh
Confidence            3444444432   5789999999999999999999864

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.87  E-value=3.6e-21  Score=146.21  Aligned_cols=157  Identities=17%  Similarity=0.245  Sum_probs=111.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC--CCCCC------------ccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhh
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD--KFDNT------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI   75 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~   75 (170)
                      .+|+++|+.++|||||+++|+..  .+...            .....+.+.......+.+..+++.+|||||+.+|....
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev   81 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV   81 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence            48999999999999999999863  22111            11223334444444444455789999999999999999


Q ss_pred             hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc-CHHHHHHHHH-------hcCCe
Q 030856           76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSR-------ELNVM  147 (170)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~  147 (170)
                      ..++..+|++++|+|+++.. ......|+..+..   .++|+++|+||+|+...+.. ..++...+..       ...++
T Consensus        82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p  157 (594)
T TIGR01394        82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP  157 (594)
T ss_pred             HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence            99999999999999998642 3334555555443   46899999999998654321 1233333332       23578


Q ss_pred             EEEeecCCCC----------ChHHHHHHHHhhC
Q 030856          148 FIETSAKAGF----------NIKGCSPTIRRLI  170 (170)
Q Consensus       148 ~~~~S~~~~~----------~v~~~~~~l~~~i  170 (170)
                      ++++||++|.          |++.+|+.|.+.+
T Consensus       158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l  190 (594)
T TIGR01394       158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV  190 (594)
T ss_pred             EEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence            9999999996          7999999998754

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK10218 GTP-binding protein; Provisional

Probab=99.87  E-value=1.3e-20  Score=143.13  Aligned_cols=159  Identities=16%  Similarity=0.200  Sum_probs=112.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC--CCCCC------------ccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD--KFDNT------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS   73 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   73 (170)
                      +-.+|+++|+.++|||||+++++..  .+...            ..++.+.+.......+....+++.+|||||+.++..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            3478999999999999999999963  22211            123345555555555556678999999999999999


Q ss_pred             hhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc-CHHHHHHHHH-------hcC
Q 030856           74 LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSR-------ELN  145 (170)
Q Consensus        74 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~-~~~~~~~~~~-------~~~  145 (170)
                      .+..+++.+|++++|+|+++....+. ..++..+..   .++|.++++||+|+...+.. ..++...+..       ...
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~  159 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD  159 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence            99999999999999999987533222 233333322   46888999999998654321 1223333321       234


Q ss_pred             CeEEEeecCCCC----------ChHHHHHHHHhhC
Q 030856          146 VMFIETSAKAGF----------NIKGCSPTIRRLI  170 (170)
Q Consensus       146 ~~~~~~S~~~~~----------~v~~~~~~l~~~i  170 (170)
                      ++++.+||++|.          ++..+++.|.+.+
T Consensus       160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i  194 (607)
T PRK10218        160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV  194 (607)
T ss_pred             CCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence            789999999998          5888998887653

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.87  E-value=2e-24  Score=137.19  Aligned_cols=162  Identities=35%  Similarity=0.560  Sum_probs=140.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCe-EEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .-+++.++|..|+|||+++.++..+.++..|..+++.++..+....+.. .+++.+||..|++.+..+...|++.+.+..
T Consensus        24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~  103 (229)
T KOG4423|consen   24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF  103 (229)
T ss_pred             hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence            4489999999999999999999999998899999999998888776654 468899999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc----CCCCeEEEEEeCCCCCCCccc-CHHHHHHHHHhcCC-eEEEeecCCCCChH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTER----GSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSRELNV-MFIETSAKAGFNIK  160 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~vvv~nK~D~~~~~~~-~~~~~~~~~~~~~~-~~~~~S~~~~~~v~  160 (170)
                      +|||+++.-+|+....|.+.+....    +..+|+++..||||+...... .......+++++|+ ..+++|++++.+++
T Consensus       104 iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~  183 (229)
T KOG4423|consen  104 IVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIP  183 (229)
T ss_pred             EEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChh
Confidence            9999999999999999999875532    356889999999998543222 24777888999998 89999999999999


Q ss_pred             HHHHHHHhh
Q 030856          161 GCSPTIRRL  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      |.-..+++.
T Consensus       184 Ea~r~lVe~  192 (229)
T KOG4423|consen  184 EAQRELVEK  192 (229)
T ss_pred             HHHHHHHHH
Confidence            998888764

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.87  E-value=2.6e-20  Score=124.02  Aligned_cols=146  Identities=16%  Similarity=0.118  Sum_probs=95.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC----------------CCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   71 (170)
                      ++++|+++|..++|||||+++|++...                +.+..+..+.+.  ....+.....++.++||||...+
T Consensus         1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~--~~~~~~~~~~~i~~iDtPG~~~~   78 (195)
T cd01884           1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINT--AHVEYETANRHYAHVDCPGHADY   78 (195)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEe--eeeEecCCCeEEEEEECcCHHHH
Confidence            358999999999999999999986411                001122222222  22333344567899999999888


Q ss_pred             hhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCccc---CHHHHHHHHHhc---
Q 030856           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSREL---  144 (170)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~~~~~---~~~~~~~~~~~~---  144 (170)
                      .......+..+|++++|+|+...-.- .....+..+..   .++| +++++||+|+....+.   ..++...+....   
T Consensus        79 ~~~~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~  154 (195)
T cd01884          79 IKNMITGAAQMDGAILVVSATDGPMP-QTREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFD  154 (195)
T ss_pred             HHHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccc
Confidence            77777788899999999998864221 12222233332   3466 7788999998632221   123444554444   


Q ss_pred             --CCeEEEeecCCCCCh
Q 030856          145 --NVMFIETSAKAGFNI  159 (170)
Q Consensus       145 --~~~~~~~S~~~~~~v  159 (170)
                        +++++++||++|.|+
T Consensus       155 ~~~v~iipiSa~~g~n~  171 (195)
T cd01884         155 GDNTPIVRGSALKALEG  171 (195)
T ss_pred             ccCCeEEEeeCccccCC
Confidence              368999999999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.87  E-value=9e-21  Score=127.85  Aligned_cols=146  Identities=21%  Similarity=0.246  Sum_probs=93.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-C------------------------------CccceeeeeeeEEEEEeCCeEEE
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFD-N------------------------------TYQATIGIDFLSKTMYLEDRTVR   59 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~-~------------------------------~~~~~~~~~~~~~~~~~~~~~~~   59 (170)
                      ||+++|.+|+|||||+++|+..... .                              +..+..+.+.....+..  ...+
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~--~~~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST--PKRK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec--CCce
Confidence            6899999999999999999753221 0                              00122222333333323  3457


Q ss_pred             EEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc----CHH
Q 030856           60 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV----SIE  135 (170)
Q Consensus        60 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~----~~~  135 (170)
                      +.+|||||+.++.......+..+|++++|+|++++..-+. ..... +.... ...++++|+||+|+......    ...
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~-~~~~~-~~~~iIvviNK~D~~~~~~~~~~~i~~  155 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSY-ILSLL-GIRHVVVAVNKMDLVDYSEEVFEEIVA  155 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHH-HHHHc-CCCcEEEEEEchhcccCCHHHHHHHHH
Confidence            8899999998877666777889999999999986522111 11112 22222 12357888999998643221    123


Q ss_pred             HHHHHHHhcCC---eEEEeecCCCCChHH
Q 030856          136 EGEAKSRELNV---MFIETSAKAGFNIKG  161 (170)
Q Consensus       136 ~~~~~~~~~~~---~~~~~S~~~~~~v~~  161 (170)
                      +.+.+.+..++   +++++||++|.|+++
T Consensus       156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         156 DYLAFAAKLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             HHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence            44555566664   589999999999875

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.86  E-value=2.9e-20  Score=141.22  Aligned_cols=154  Identities=21%  Similarity=0.223  Sum_probs=101.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCcc----ceeeeeeeEEEEEe--CCeE-----E-----EEEEEecCChhh
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ----ATIGIDFLSKTMYL--EDRT-----V-----RLQLWDTAGQER   70 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~-----~-----~~~i~D~~g~~~   70 (170)
                      .++..|+++|.+++|||||++++.+........    ++.+..+.......  .+..     .     .+.+|||||++.
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~   83 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA   83 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence            466789999999999999999998765432222    22222222111100  0111     1     268999999999


Q ss_pred             hhhhhhhhhcCCcEEEEEEeCCC---hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc--C----------HH
Q 030856           71 FRSLIPSYIRDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--S----------IE  135 (170)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~--~----------~~  135 (170)
                      |..++...+..+|++++|+|+++   +++++.+..    +..   .++|+++++||+|+......  .          ..
T Consensus        84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~  156 (586)
T PRK04004         84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ  156 (586)
T ss_pred             HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence            99988888899999999999987   455544432    221   47899999999998521110  0          00


Q ss_pred             -----------HHHHHHHh---------------cCCeEEEeecCCCCChHHHHHHHH
Q 030856          136 -----------EGEAKSRE---------------LNVMFIETSAKAGFNIKGCSPTIR  167 (170)
Q Consensus       136 -----------~~~~~~~~---------------~~~~~~~~S~~~~~~v~~~~~~l~  167 (170)
                                 +.......               ..++++++||.+|+|++++++.+.
T Consensus       157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~  214 (586)
T PRK04004        157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLA  214 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHH
Confidence                       00011111               135899999999999999988775

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.86  E-value=3.3e-20  Score=141.62  Aligned_cols=154  Identities=18%  Similarity=0.164  Sum_probs=104.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC---CCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDK---FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      -|+++|..++|||||+++|.+..   .+.+..+..+.+.........+ ...+.+||+||++.+.......+.++|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            58999999999999999999643   2333333444444333332222 2358999999999997777777899999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCccc--CHHHHHHHHHhcC---CeEEEeecCCCCChHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV--SIEEGEAKSRELN---VMFIETSAKAGFNIKG  161 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~S~~~~~~v~~  161 (170)
                      |+|+.+... ......+..+ ...  ++| +++|+||+|+.++...  ..++.+++....+   .+++++||++|+|+++
T Consensus        81 VVda~eg~~-~qT~ehl~il-~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~  156 (614)
T PRK10512         81 VVACDDGVM-AQTREHLAIL-QLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA  156 (614)
T ss_pred             EEECCCCCc-HHHHHHHHHH-HHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence            999886311 1112222222 222  355 5789999998653222  1244455555444   5899999999999999


Q ss_pred             HHHHHHhh
Q 030856          162 CSPTIRRL  169 (170)
Q Consensus       162 ~~~~l~~~  169 (170)
                      ++++|.+.
T Consensus       157 L~~~L~~~  164 (614)
T PRK10512        157 LREHLLQL  164 (614)
T ss_pred             HHHHHHHh
Confidence            99998753

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.86  E-value=2.2e-20  Score=127.90  Aligned_cols=114  Identities=18%  Similarity=0.222  Sum_probs=79.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC--------C-----Cc---cceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFD--------N-----TY---QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL   74 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~--------~-----~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   74 (170)
                      +|+++|..|+|||||+++++.....        .     ++   ....+...............++.+|||||+.++...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            5899999999999999999864211        0     00   011122222223333344578999999999999888


Q ss_pred             hhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856           75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        75 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~  128 (170)
                      ...+++.+|++++|+|.++.... ....++..+..   .++|+++++||+|+..
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~~  130 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRAG  130 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECccccC
Confidence            89999999999999999875433 23344444433   3689999999999863

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.86  E-value=2.8e-20  Score=139.39  Aligned_cols=152  Identities=18%  Similarity=0.223  Sum_probs=115.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh------hhhhh-h-
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIPSY-I-   79 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~-~-   79 (170)
                      +..+|+++|.||+|||||+|++++.+..-..-|..+.+.........+.  ++++.|+||......      ..+.+ + 
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~   79 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLE   79 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence            4567999999999999999999998776555566766777666665554  489999999443222      22223 3 


Q ss_pred             cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCCh
Q 030856           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (170)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v  159 (170)
                      ...|+++-|.|++|.+.--.+.-.+.+      -+.|++++.|+.|..+.+.+. -+.+++.+..|+|++++||++|.|+
T Consensus        80 ~~~D~ivnVvDAtnLeRnLyltlQLlE------~g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~tvA~~g~G~  152 (653)
T COG0370          80 GKPDLIVNVVDATNLERNLYLTLQLLE------LGIPMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPTVAKRGEGL  152 (653)
T ss_pred             CCCCEEEEEcccchHHHHHHHHHHHHH------cCCCeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEEEeecCCCH
Confidence            357999999999987654443332222      378999999999987665553 5567889999999999999999999


Q ss_pred             HHHHHHHHh
Q 030856          160 KGCSPTIRR  168 (170)
Q Consensus       160 ~~~~~~l~~  168 (170)
                      +++...+.+
T Consensus       153 ~~l~~~i~~  161 (653)
T COG0370         153 EELKRAIIE  161 (653)
T ss_pred             HHHHHHHHH
Confidence            999998875

>cd04167 Snu114p Snu114p subfamily

Probab=99.86  E-value=2e-20  Score=126.63  Aligned_cols=155  Identities=24%  Similarity=0.278  Sum_probs=101.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCC-----------c------cceeeeeee--EEEEEe---CCeEEEEEEEecCCh
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNT-----------Y------QATIGIDFL--SKTMYL---EDRTVRLQLWDTAGQ   68 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~-----------~------~~~~~~~~~--~~~~~~---~~~~~~~~i~D~~g~   68 (170)
                      +|+++|+.|+|||||+++|+.......           +      ....+.+..  ......   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            689999999999999999987433211           0      011111211  111111   345688999999999


Q ss_pred             hhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc-c-----------CHHH
Q 030856           69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ-V-----------SIEE  136 (170)
Q Consensus        69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~-~-----------~~~~  136 (170)
                      .++......++..+|++++|+|+++..+... ..++.....   .+.|+++|+||+|+..... .           ..++
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~  157 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDE  157 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHH
Confidence            9998888888999999999999987655433 333333322   3589999999999752110 0           0122


Q ss_pred             HHHHHHhcCC-----------eEEEeecCCCCChH--------HHHHHHHhh
Q 030856          137 GEAKSRELNV-----------MFIETSAKAGFNIK--------GCSPTIRRL  169 (170)
Q Consensus       137 ~~~~~~~~~~-----------~~~~~S~~~~~~v~--------~~~~~l~~~  169 (170)
                      ....+...+.           .++++|++.+++..        ++++.|.+.
T Consensus       158 ~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~  209 (213)
T cd04167         158 VNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSN  209 (213)
T ss_pred             HHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhh
Confidence            3333333322           27789999999877        777777654

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.85  E-value=7.5e-20  Score=131.68  Aligned_cols=155  Identities=25%  Similarity=0.232  Sum_probs=111.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh-----------hh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----------LI   75 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~   75 (170)
                      ..++|+++|.|++|||||+|+++++... .+..+.++.+.....+..+++  ++.++||+|...-..           ..
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehhh
Confidence            5699999999999999999999987654 555666777777777776664  478889999443111           12


Q ss_pred             hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhc-----CCeEEE
Q 030856           76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-----NVMFIE  150 (170)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~  150 (170)
                      ...+..+|++++|+|++.+-+-++.  .+..+..  ..+.++++|+||+|+.++++...++.+...+..     ..+++.
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~--~ia~~i~--~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~  330 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDL--RIAGLIE--EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF  330 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHH--HHHHHHH--HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence            2346789999999999976443332  2222222  247889999999999876545555544443321     248999


Q ss_pred             eecCCCCChHHHHHHHHh
Q 030856          151 TSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus       151 ~S~~~~~~v~~~~~~l~~  168 (170)
                      +||.++.+++++|+.+.+
T Consensus       331 iSA~~~~~i~~l~~~i~~  348 (444)
T COG1160         331 ISALTGQGLDKLFEAIKE  348 (444)
T ss_pred             EEecCCCChHHHHHHHHH
Confidence            999999999999999875

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.85  E-value=3.2e-20  Score=126.10  Aligned_cols=146  Identities=21%  Similarity=0.214  Sum_probs=92.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-------------------------------CCccceeeeeeeEEEEEeCCeEEE
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFD-------------------------------NTYQATIGIDFLSKTMYLEDRTVR   59 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~   59 (170)
                      +|+++|+.++|||||+.+|+.....                               .+..+..+.+.....+..  ...+
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~--~~~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET--EKYR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee--CCeE
Confidence            5899999999999999999742110                               011122223333333333  4468


Q ss_pred             EEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhh---HH---hHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC--cc
Q 030856           60 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQS---FL---NTSKWIDEVRTERGSDVIIVLVGNKTDLVEK--RQ  131 (170)
Q Consensus        60 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~--~~  131 (170)
                      +.+|||||+..+.......+..+|++++|+|++++..   +.   .....+... ... ...|+++++||+|+...  ..
T Consensus        79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~iiivvNK~Dl~~~~~~~  156 (219)
T cd01883          79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL-GVKQLIVAVNKMDDVTVNWSE  156 (219)
T ss_pred             EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc-CCCeEEEEEEccccccccccH
Confidence            9999999998887777777888999999999987421   11   122222222 222 23688999999998632  11


Q ss_pred             cC----HHHHHHHHHhc-----CCeEEEeecCCCCChH
Q 030856          132 VS----IEEGEAKSREL-----NVMFIETSAKAGFNIK  160 (170)
Q Consensus       132 ~~----~~~~~~~~~~~-----~~~~~~~S~~~~~~v~  160 (170)
                      ..    .++++.+....     +++++++||++|.|++
T Consensus       157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            11    12233333443     3679999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.85  E-value=1.5e-19  Score=117.57  Aligned_cols=160  Identities=20%  Similarity=0.226  Sum_probs=106.8

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCC----------hhhhh
Q 030856            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFR   72 (170)
Q Consensus         3 ~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~   72 (170)
                      +.+......|+++|.+|||||||||+|++++.-.....+.|.+.....+.+++.   +.++|.||          .+.+.
T Consensus        18 ~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~   94 (200)
T COG0218          18 QYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWK   94 (200)
T ss_pred             hCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHH
Confidence            345556789999999999999999999998754444455554555555555553   78999999          44456


Q ss_pred             hhhhhhhcC---CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCH--HH-HHHHHHhcCC
Q 030856           73 SLIPSYIRD---SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI--EE-GEAKSRELNV  146 (170)
Q Consensus        73 ~~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~--~~-~~~~~~~~~~  146 (170)
                      .+...|+..   -.++++++|+..+..-.+. +.++.+..   .++|+++++||+|.....+...  .. .+.+......
T Consensus        95 ~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~  170 (200)
T COG0218          95 KLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPD  170 (200)
T ss_pred             HHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCc
Confidence            667777664   3578888998765332221 22222222   4799999999999876443321  11 1122222233


Q ss_pred             e--EEEeecCCCCChHHHHHHHHhh
Q 030856          147 M--FIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       147 ~--~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      .  ++..|+..+.|++++...|.+.
T Consensus       171 ~~~~~~~ss~~k~Gi~~l~~~i~~~  195 (200)
T COG0218         171 DQWVVLFSSLKKKGIDELKAKILEW  195 (200)
T ss_pred             cceEEEEecccccCHHHHHHHHHHH
Confidence            3  8889999999999999988764

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.85  E-value=1.1e-19  Score=124.44  Aligned_cols=160  Identities=18%  Similarity=0.200  Sum_probs=105.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh------------hhh
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER------------FRS   73 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------------~~~   73 (170)
                      +.+.++|+++|.||+|||||.|.+++.+.........+.+....-+ +.....++.|+||||.-.            ..+
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi-~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq  147 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI-ITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ  147 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE-EecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence            4577999999999999999999999998875554444433333333 333445899999999221            111


Q ss_pred             hhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc-------------ccC---HHHH
Q 030856           74 LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR-------------QVS---IEEG  137 (170)
Q Consensus        74 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~-------------~~~---~~~~  137 (170)
                      .....+.++|.+++++|++++...-. ...+..+..+  .++|-++|+||.|....+             +++   .+-.
T Consensus       148 ~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~  224 (379)
T KOG1423|consen  148 NPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ  224 (379)
T ss_pred             CHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence            23344678999999999996422222 2223344444  378999999999975432             111   1112


Q ss_pred             HHHHHhc---------CC----eEEEeecCCCCChHHHHHHHHhh
Q 030856          138 EAKSREL---------NV----MFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       138 ~~~~~~~---------~~----~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      +++....         |+    .+|.+||++|+|++++.++|...
T Consensus       225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsq  269 (379)
T KOG1423|consen  225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQ  269 (379)
T ss_pred             HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhc
Confidence            2222111         12    48999999999999999998753

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.84  E-value=1.1e-19  Score=124.90  Aligned_cols=156  Identities=19%  Similarity=0.185  Sum_probs=111.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh----hhhhhh---hhcCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----RSLIPS---YIRDS   82 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~---~~~~~   82 (170)
                      -.+.++|.|++|||||++++...+..-...+.++.......+.+++-. .+++-|.||.-+=    +.+-..   .+++|
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhh
Confidence            457899999999999999999876553333333334433444444332 4889999993321    222222   25679


Q ss_pred             cEEEEEEeCCCh---hhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCC
Q 030856           83 SVAVVVYDVASR---QSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAG  156 (170)
Q Consensus        83 d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~--~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~  156 (170)
                      +.++||+|++.+   +.|+.++....++..+..  .+.|.++|+||+|+.+..   .....++++...= .++++||+.+
T Consensus       276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~~  352 (366)
T KOG1489|consen  276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKSG  352 (366)
T ss_pred             ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeeccc
Confidence            999999999988   888888777777776654  578999999999985221   1224566666554 5999999999


Q ss_pred             CChHHHHHHHHhh
Q 030856          157 FNIKGCSPTIRRL  169 (170)
Q Consensus       157 ~~v~~~~~~l~~~  169 (170)
                      ++++++++.|.+.
T Consensus       353 egl~~ll~~lr~~  365 (366)
T KOG1489|consen  353 EGLEELLNGLREL  365 (366)
T ss_pred             cchHHHHHHHhhc
Confidence            9999999998765

>PRK12736 elongation factor Tu; Reviewed

Probab=99.84  E-value=3.3e-19  Score=130.52  Aligned_cols=158  Identities=17%  Similarity=0.133  Sum_probs=104.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCC----------------CCccceeeeeeeEEEEEeCCeEEEEEEEecCChh
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD----------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   69 (170)
                      ..++++|+++|..++|||||+++|++....                .+..+..+.+..  ...+......+.++||||++
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~--~~~~~~~~~~i~~iDtPGh~   86 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTA--HVEYETEKRHYAHVDCPGHA   86 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEE--eeEecCCCcEEEEEECCCHH
Confidence            456799999999999999999999863110                111222333332  23333344578999999999


Q ss_pred             hhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCcccC---HHHHHHHHHhcC
Q 030856           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVS---IEEGEAKSRELN  145 (170)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~~~~~~---~~~~~~~~~~~~  145 (170)
                      +|.......+..+|++++|+|+.+...-+ ....+..+..   .++| +++++||+|+.+..+..   .++...+.+..+
T Consensus        87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~  162 (394)
T PRK12736         87 DYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence            88777777778899999999998642211 1222222222   2577 67889999986432221   234555555554


Q ss_pred             -----CeEEEeecCCCC--------ChHHHHHHHHhh
Q 030856          146 -----VMFIETSAKAGF--------NIKGCSPTIRRL  169 (170)
Q Consensus       146 -----~~~~~~S~~~~~--------~v~~~~~~l~~~  169 (170)
                           ++++++||++|.        +++++++.|.+.
T Consensus       163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~  199 (394)
T PRK12736        163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEY  199 (394)
T ss_pred             CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHh
Confidence                 589999999983        578888887654

>PRK12735 elongation factor Tu; Reviewed

Probab=99.83  E-value=4.8e-19  Score=129.76  Aligned_cols=157  Identities=17%  Similarity=0.122  Sum_probs=102.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCC-------------C---CCccceeeeeeeEEEEEeCCeEEEEEEEecCChh
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF-------------D---NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   69 (170)
                      ..+.++|+++|.+++|||||+++|++...             +   .+..+..+.+..  ...+.....++.++||||++
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~--~~~~~~~~~~i~~iDtPGh~   86 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTS--HVEYETANRHYAHVDCPGHA   86 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEe--eeEEcCCCcEEEEEECCCHH
Confidence            35679999999999999999999986210             0   111222233332  22333344578999999998


Q ss_pred             hhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEE-EEEeCCCCCCCccc---CHHHHHHHHHhcC
Q 030856           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV-LVGNKTDLVEKRQV---SIEEGEAKSRELN  145 (170)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v-vv~nK~D~~~~~~~---~~~~~~~~~~~~~  145 (170)
                      +|.......+..+|++++|+|+.+... ......+..+..   .++|.+ +++||+|+.+..+.   ..++++.+...++
T Consensus        87 ~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~  162 (396)
T PRK12735         87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence            887777777889999999999986422 122233333322   357755 67999998642221   1234555555543


Q ss_pred             -----CeEEEeecCCCC----------ChHHHHHHHHh
Q 030856          146 -----VMFIETSAKAGF----------NIKGCSPTIRR  168 (170)
Q Consensus       146 -----~~~~~~S~~~~~----------~v~~~~~~l~~  168 (170)
                           ++++++|+.++.          ++.++++.|.+
T Consensus       163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~  200 (396)
T PRK12735        163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDS  200 (396)
T ss_pred             CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHh
Confidence                 689999999984          57788877765

>COG2262 HflX GTPases [General function prediction only]

Probab=99.83  E-value=6.2e-19  Score=125.30  Aligned_cols=156  Identities=21%  Similarity=0.200  Sum_probs=109.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh---------hhhhhhhh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSY   78 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~   78 (170)
                      .-..|+++|..|+|||||+|++.+........-..+.+.....+.+.+ +..+.+.||.|.-.         |++ .-..
T Consensus       191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFks-TLEE  268 (411)
T COG2262         191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKS-TLEE  268 (411)
T ss_pred             CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHH-HHHH
Confidence            347899999999999999999997665533333333444455554544 34688999999332         222 2223


Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCC
Q 030856           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (170)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  158 (170)
                      ...+|+++.|+|+++|...+.+..-...+......+.|+++|.||+|+.....    .......... ..+.+||++|+|
T Consensus       269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~~g  343 (411)
T COG2262         269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTGEG  343 (411)
T ss_pred             hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccCcC
Confidence            56899999999999997777766665555555456799999999999764333    1111111222 589999999999


Q ss_pred             hHHHHHHHHhhC
Q 030856          159 IKGCSPTIRRLI  170 (170)
Q Consensus       159 v~~~~~~l~~~i  170 (170)
                      ++.+.+.|.+.+
T Consensus       344 l~~L~~~i~~~l  355 (411)
T COG2262         344 LDLLRERIIELL  355 (411)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988753

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.83  E-value=4.9e-19  Score=129.76  Aligned_cols=146  Identities=16%  Similarity=0.110  Sum_probs=96.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCC----------------CCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   69 (170)
                      ..+.++|+++|..++|||||+++|++...                +.+..+..+.+.  ....++....++.+|||||++
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~--~~~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINT--AHVEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceee--EEEEEcCCCEEEEEEECCchH
Confidence            45689999999999999999999974310                011122333333  333344445678999999999


Q ss_pred             hhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEE-EEEeCCCCCCCcccC---HHHHHHHHHhcC
Q 030856           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV-LVGNKTDLVEKRQVS---IEEGEAKSRELN  145 (170)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v-vv~nK~D~~~~~~~~---~~~~~~~~~~~~  145 (170)
                      +|.......+..+|++++|+|+.+...-+. ...+..+..   .++|.+ +++||+|+.+..+..   .++.+.++..++
T Consensus        87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~  162 (394)
T TIGR00485        87 DYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence            887766666778999999999986322221 222222322   256654 689999986533221   235566666654


Q ss_pred             -----CeEEEeecCCCC
Q 030856          146 -----VMFIETSAKAGF  157 (170)
Q Consensus       146 -----~~~~~~S~~~~~  157 (170)
                           ++++++|+.++.
T Consensus       163 ~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       163 FPGDDTPIIRGSALKAL  179 (394)
T ss_pred             CCccCccEEECcccccc
Confidence                 689999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.83  E-value=3.8e-19  Score=120.32  Aligned_cols=114  Identities=20%  Similarity=0.237  Sum_probs=78.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC--C--------------CccceeeeeeeEEEEEeC--------CeEEEEEEEec
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFD--N--------------TYQATIGIDFLSKTMYLE--------DRTVRLQLWDT   65 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~   65 (170)
                      .+|+++|..++|||||+++|+.....  .              +..+..+..........+        +..+.+.+|||
T Consensus         1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT   80 (222)
T cd01885           1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS   80 (222)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence            37999999999999999999854211  0              001111111111122222        34688999999


Q ss_pred             CChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856           66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        66 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~  127 (170)
                      ||+.++......++..+|++++|+|+++....+.... +....   ..++|+++|+||+|+.
T Consensus        81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~-l~~~~---~~~~p~ilviNKiD~~  138 (222)
T cd01885          81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETV-LRQAL---KERVKPVLVINKIDRL  138 (222)
T ss_pred             CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHH-HHHHH---HcCCCEEEEEECCCcc
Confidence            9999999999999999999999999997654443222 22222   2468999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.82  E-value=6.1e-19  Score=118.02  Aligned_cols=154  Identities=14%  Similarity=0.166  Sum_probs=92.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeee-ee--eEEEEEeCCeEEEEEEEecCChhhhhhhhhhh-----hc
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGI-DF--LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY-----IR   80 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----~~   80 (170)
                      +++|+++|.+|+|||||+|++.+...+.......+. ..  ....+... ....+.+||+||..........+     +.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            479999999999999999999986554322222211 11  11111111 12368999999965432222222     56


Q ss_pred             CCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc-----------cCHHHHHHHHH----hc
Q 030856           81 DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ-----------VSIEEGEAKSR----EL  144 (170)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~-----------~~~~~~~~~~~----~~  144 (170)
                      ++|+++++.+.    ++... ..++..+...   +.|+++|+||+|+.....           ...++.++.+.    ..
T Consensus        80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~  152 (197)
T cd04104          80 EYDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA  152 (197)
T ss_pred             CcCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence            78998888542    23333 3444444443   578999999999843111           01112222222    22


Q ss_pred             C---CeEEEeecC--CCCChHHHHHHHHhhC
Q 030856          145 N---VMFIETSAK--AGFNIKGCSPTIRRLI  170 (170)
Q Consensus       145 ~---~~~~~~S~~--~~~~v~~~~~~l~~~i  170 (170)
                      +   .+++.+|+.  .+.++..+.+.+...|
T Consensus       153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l  183 (197)
T cd04104         153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDL  183 (197)
T ss_pred             CCCCCCEEEEeCCChhhcChHHHHHHHHHHh
Confidence            2   388999998  6789999999987653

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.82  E-value=1.7e-18  Score=119.88  Aligned_cols=156  Identities=21%  Similarity=0.213  Sum_probs=108.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh--hhh-------hhhh
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--FRS-------LIPS   77 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~-------~~~~   77 (170)
                      ..-.+|++.|.||||||||++++.+.+..-...|.++.......+..  ...+++++||||.-+  ...       ....
T Consensus       166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~--~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~A  243 (346)
T COG1084         166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFER--GYLRIQVIDTPGLLDRPLEERNEIERQAILA  243 (346)
T ss_pred             CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeec--CCceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence            35678999999999999999999998877444555544555444433  346899999999221  111       1111


Q ss_pred             hhcCCcEEEEEEeCCCh--hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecC
Q 030856           78 YIRDSSVAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAK  154 (170)
Q Consensus        78 ~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~  154 (170)
                      .-.-.++++|++|.+..  -+.+.....+..+.....  .|+++|+||+|.......  +++......-+. ....+++.
T Consensus       244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~~  319 (346)
T COG1084         244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKISAT  319 (346)
T ss_pred             HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHH--HHHHHHHHhhccccccceeee
Confidence            22247899999999853  567777888888888874  899999999998654433  333333444444 57888888


Q ss_pred             CCCChHHHHHHHHh
Q 030856          155 AGFNIKGCSPTIRR  168 (170)
Q Consensus       155 ~~~~v~~~~~~l~~  168 (170)
                      .+.+++.....+..
T Consensus       320 ~~~~~d~~~~~v~~  333 (346)
T COG1084         320 KGCGLDKLREEVRK  333 (346)
T ss_pred             ehhhHHHHHHHHHH
Confidence            88888877655543

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.82  E-value=6.1e-19  Score=119.37  Aligned_cols=155  Identities=19%  Similarity=0.258  Sum_probs=98.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCcc---ceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh-----hhhhhhcCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQ---ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----LIPSYIRDS   82 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~~   82 (170)
                      ||+++|+.+|||||+.+.++++..+.++.   +|..  .....+. ......+.+||+||+..+..     .....++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~--ve~~~v~-~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v   77 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTID--VEKSHVR-FLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNV   77 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----S--EEEEEEE-CTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCC--ceEEEEe-cCCCcEEEEEEcCCccccccccccccHHHHHhcc
Confidence            79999999999999999999887654432   2322  2222221 12335899999999875544     356678999


Q ss_pred             cEEEEEEeCCChh---hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc--cc----CHHHHHHHHHhcC---CeEEE
Q 030856           83 SVAVVVYDVASRQ---SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR--QV----SIEEGEAKSRELN---VMFIE  150 (170)
Q Consensus        83 d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~--~~----~~~~~~~~~~~~~---~~~~~  150 (170)
                      .++|||+|+.+.+   .+..+...+..+.+.. +++.+.++++|+|+..+.  ..    ..++..+.+...+   +.++.
T Consensus        78 ~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~  156 (232)
T PF04670_consen   78 GVLIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFL  156 (232)
T ss_dssp             SEEEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEE
T ss_pred             CEEEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEe
Confidence            9999999998443   3334444445455444 789999999999986421  11    1233444444555   78999


Q ss_pred             eecCCCCChHHHHHHHHhhC
Q 030856          151 TSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       151 ~S~~~~~~v~~~~~~l~~~i  170 (170)
                      +|..+ ..+-+.+..+++.+
T Consensus       157 TSI~D-~Sly~A~S~Ivq~L  175 (232)
T PF04670_consen  157 TSIWD-ESLYEAWSKIVQKL  175 (232)
T ss_dssp             E-TTS-THHHHHHHHHHHTT
T ss_pred             ccCcC-cHHHHHHHHHHHHH
Confidence            99888 48999998888754

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.81  E-value=2.3e-18  Score=116.95  Aligned_cols=154  Identities=15%  Similarity=0.171  Sum_probs=96.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccce-----------------------eeeeeeEEE-------------EEeC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQAT-----------------------IGIDFLSKT-------------MYLE   54 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~-----------------------~~~~~~~~~-------------~~~~   54 (170)
                      ||+++|+.++|||||++++..+.++......                       .+.+.....             ..+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            6899999999999999999975553211100                       011100000             0011


Q ss_pred             CeEEEEEEEecCChhhhhhhhhhhhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc
Q 030856           55 DRTVRLQLWDTAGQERFRSLIPSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV  132 (170)
Q Consensus        55 ~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~  132 (170)
                      .....+.+.|+||++.+.......+.  .+|++++|+|+.++.. .....++..+..   .++|+++|+||+|+.++...
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~  156 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA---LNIPVFVVVTKIDLAPANIL  156 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEECccccCHHHH
Confidence            22357899999999888665554444  6899999999876432 222333333332   36889999999998643222


Q ss_pred             C--HHHHHHHHHh--------------------------cCCeEEEeecCCCCChHHHHHHHHh
Q 030856          133 S--IEEGEAKSRE--------------------------LNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus       133 ~--~~~~~~~~~~--------------------------~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      .  .++..+....                          ..++++.+|+.+|+|++++...|..
T Consensus       157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            1  1222222221                          1238999999999999999988764

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd01850 CDC_Septin CDC/Septin

Probab=99.81  E-value=2e-18  Score=120.62  Aligned_cols=143  Identities=13%  Similarity=0.166  Sum_probs=94.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCC----------ccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh----
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT----------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----   73 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----   73 (170)
                      -.++|+++|.+|+|||||+|++++......          ..++.........+..++..+++.+|||||..+...    
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            368999999999999999999998766432          234444455555556667778999999999432211    


Q ss_pred             ----------------------hhhhhhc--CCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856           74 ----------------------LIPSYIR--DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        74 ----------------------~~~~~~~--~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~  128 (170)
                                            .....+.  .+|+++++++.+.. .+... ...+..+.    ..+|+++|+||+|+..
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~----~~v~vi~VinK~D~l~  157 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS----KRVNIIPVIAKADTLT  157 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh----ccCCEEEEEECCCcCC
Confidence                                  0001222  46788888887642 12111 22223332    2689999999999865


Q ss_pred             C--cccCHHHHHHHHHhcCCeEEEeecCC
Q 030856          129 K--RQVSIEEGEAKSRELNVMFIETSAKA  155 (170)
Q Consensus       129 ~--~~~~~~~~~~~~~~~~~~~~~~S~~~  155 (170)
                      .  ........++.+..++++++.....+
T Consensus       158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         158 PEELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence            3  22345667777888899888776543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd04169 RF3 RF3 subfamily

Probab=99.81  E-value=4.2e-18  Score=118.53  Aligned_cols=117  Identities=23%  Similarity=0.271  Sum_probs=79.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCC-C----------------Ccc---ceeeeeeeEEEEEeCCeEEEEEEEecCCh
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFD-N----------------TYQ---ATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~-~----------------~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   68 (170)
                      ..+|+++|++|+|||||+++|+..... .                ++.   ...+.........+.....++.+|||||+
T Consensus         2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~   81 (267)
T cd04169           2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH   81 (267)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence            368999999999999999999853111 0                000   01122223333344555678999999999


Q ss_pred             hhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 030856           69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK  129 (170)
Q Consensus        69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~  129 (170)
                      .++.......++.+|++++|+|+++..... ...++.....   .++|+++++||+|+...
T Consensus        82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~---~~~P~iivvNK~D~~~a  138 (267)
T cd04169          82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL---RGIPIITFINKLDREGR  138 (267)
T ss_pred             hHHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh---cCCCEEEEEECCccCCC
Confidence            988887778889999999999998753222 2233333222   47899999999997553

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>CHL00071 tufA elongation factor Tu

Probab=99.81  E-value=2.8e-18  Score=126.25  Aligned_cols=147  Identities=16%  Similarity=0.132  Sum_probs=96.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCC----------------CCccceeeeeeeEEEEEeCCeEEEEEEEecCChh
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD----------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   69 (170)
                      ..+.++|+++|.+++|||||+++|++....                .+..+..+.+...  ..+.....++.+.||||+.
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~--~~~~~~~~~~~~iDtPGh~   86 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAH--VEYETENRHYAHVDCPGHA   86 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccE--EEEccCCeEEEEEECCChH
Confidence            456799999999999999999999964210                1111223333222  2233344578899999998


Q ss_pred             hhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCccc---CHHHHHHHHHhcC
Q 030856           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSRELN  145 (170)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~~~~~---~~~~~~~~~~~~~  145 (170)
                      ++.......+..+|++++|+|+..... ......+..+..   .++| +++++||+|+.+..+.   ..+++..+.+..+
T Consensus        87 ~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~  162 (409)
T CHL00071         87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD  162 (409)
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            887777777889999999999885422 122222222222   3577 7788999998653321   1234555555443


Q ss_pred             -----CeEEEeecCCCCC
Q 030856          146 -----VMFIETSAKAGFN  158 (170)
Q Consensus       146 -----~~~~~~S~~~~~~  158 (170)
                           ++++++|+.+|++
T Consensus       163 ~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        163 FPGDDIPIVSGSALLALE  180 (409)
T ss_pred             CCCCcceEEEcchhhccc
Confidence                 6899999999874

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.80  E-value=8.7e-18  Score=122.99  Aligned_cols=151  Identities=21%  Similarity=0.254  Sum_probs=115.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCC-eEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      .++.=|+++|.-..|||||+.++.............+-+....++..+. ..-.+.|.||||++.|..+...-..-+|++
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa   82 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA   82 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence            3556789999999999999999999888766566666666666665541 234689999999999999999999999999


Q ss_pred             EEEEeCCCh---hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC---------CeEEEeec
Q 030856           86 VVVYDVASR---QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN---------VMFIETSA  153 (170)
Q Consensus        86 i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~S~  153 (170)
                      ++|+++.+.   ++.+.       +......+.|+++++||+|..+   .+++....-..++|         ..++++||
T Consensus        83 ILVVa~dDGv~pQTiEA-------I~hak~a~vP~iVAiNKiDk~~---~np~~v~~el~~~gl~~E~~gg~v~~VpvSA  152 (509)
T COG0532          83 ILVVAADDGVMPQTIEA-------INHAKAAGVPIVVAINKIDKPE---ANPDKVKQELQEYGLVPEEWGGDVIFVPVSA  152 (509)
T ss_pred             EEEEEccCCcchhHHHH-------HHHHHHCCCCEEEEEecccCCC---CCHHHHHHHHHHcCCCHhhcCCceEEEEeec
Confidence            999999973   33333       2222335899999999999873   33333333333333         37999999


Q ss_pred             CCCCChHHHHHHHH
Q 030856          154 KAGFNIKGCSPTIR  167 (170)
Q Consensus       154 ~~~~~v~~~~~~l~  167 (170)
                      ++|+|+++|+..+.
T Consensus       153 ~tg~Gi~eLL~~il  166 (509)
T COG0532         153 KTGEGIDELLELIL  166 (509)
T ss_pred             cCCCCHHHHHHHHH
Confidence            99999999999876

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.79  E-value=2.5e-18  Score=127.28  Aligned_cols=150  Identities=18%  Similarity=0.219  Sum_probs=101.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCC--C-----------------------------CCccceeeeeeeEEEEEeC
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF--D-----------------------------NTYQATIGIDFLSKTMYLE   54 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~   54 (170)
                      ..++++|+++|+.++|||||+.+|+....  +                             .+.....+.+.  ......
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~--~~~~~~   81 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDI--ALWKFE   81 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEE--EEEEec
Confidence            35679999999999999999999874211  0                             01111222222  223344


Q ss_pred             CeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHH-------hHHHHHHHHHHhcCCCCe-EEEEEeCCCC
Q 030856           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFL-------NTSKWIDEVRTERGSDVI-IVLVGNKTDL  126 (170)
Q Consensus        55 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~vvv~nK~D~  126 (170)
                      .....+.++|+||+++|.......+..+|++|+|+|+++. .|+       .....+... .  ..++| +++++||+|+
T Consensus        82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~-~--~~gi~~iIV~vNKmD~  157 (447)
T PLN00043         82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLA-F--TLGVKQMICCCNKMDA  157 (447)
T ss_pred             CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHH-H--HcCCCcEEEEEEcccC
Confidence            4557899999999999999999999999999999999862 232       222222222 1  23564 7888999997


Q ss_pred             CCC--cc----cCHHHHHHHHHhcC-----CeEEEeecCCCCChHH
Q 030856          127 VEK--RQ----VSIEEGEAKSRELN-----VMFIETSAKAGFNIKG  161 (170)
Q Consensus       127 ~~~--~~----~~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~  161 (170)
                      ...  .+    ...++++.+++..+     ++++++|+++|+|+.+
T Consensus       158 ~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        158 TTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             CchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            521  11    11456667777666     5799999999999853

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.79  E-value=2.4e-18  Score=128.36  Aligned_cols=153  Identities=20%  Similarity=0.240  Sum_probs=96.0

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCC--C--------------C-----------------ccceeeeeeeEEEE
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFD--N--------------T-----------------YQATIGIDFLSKTM   51 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~--~--------------~-----------------~~~~~~~~~~~~~~   51 (170)
                      +....++|+++|..++|||||+++|+...-.  .              .                 ..+..+.+.....+
T Consensus        23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~  102 (474)
T PRK05124         23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF  102 (474)
T ss_pred             cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence            3466799999999999999999999854221  0              0                 00112223222222


Q ss_pred             EeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc
Q 030856           52 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        52 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~  131 (170)
                        .....++.++||||++.+.......+..+|++++|+|+.....-+....+  .+....+ ..|+++++||+|+.+.+.
T Consensus       103 --~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~--~l~~~lg-~~~iIvvvNKiD~~~~~~  177 (474)
T PRK05124        103 --STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS--FIATLLG-IKHLVVAVNKMDLVDYSE  177 (474)
T ss_pred             --ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH--HHHHHhC-CCceEEEEEeeccccchh
Confidence              23345789999999988866666667999999999998754211111111  1222222 246888999999864332


Q ss_pred             cCHH----HHHHHHHhc----CCeEEEeecCCCCChHHH
Q 030856          132 VSIE----EGEAKSREL----NVMFIETSAKAGFNIKGC  162 (170)
Q Consensus       132 ~~~~----~~~~~~~~~----~~~~~~~S~~~~~~v~~~  162 (170)
                      ...+    +...+.+..    ..+++++||++|+|++++
T Consensus       178 ~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        178 EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            1112    222333333    368999999999998763

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=1.1e-18  Score=109.27  Aligned_cols=156  Identities=19%  Similarity=0.248  Sum_probs=116.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      +.=|+++.|-.|+|||||++.|.+.+.. .+.||.-  .......+.+  .+++.+|.+|+...+..|..|+..+|++++
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlH--PTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~   93 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLH--PTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY   93 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHcccccc-ccCCCcC--CChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence            4568999999999999999999987653 2233321  1122233333  678999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHH------Hh--------cC---CeEE
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKS------RE--------LN---VMFI  149 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~------~~--------~~---~~~~  149 (170)
                      .+|+-+.+.|...+..++.+..... ..+|+++.+||+|.+.+.  +.++.+...      -.        .+   +.++
T Consensus        94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf  171 (193)
T KOG0077|consen   94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF  171 (193)
T ss_pred             eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence            9999999999999888888766553 689999999999987644  222222211      10        11   2567


Q ss_pred             EeecCCCCChHHHHHHHHhhC
Q 030856          150 ETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       150 ~~S~~~~~~v~~~~~~l~~~i  170 (170)
                      -||...+.+--+.|.|+.+.|
T Consensus       172 mcsi~~~~gy~e~fkwl~qyi  192 (193)
T KOG0077|consen  172 MCSIVRKMGYGEGFKWLSQYI  192 (193)
T ss_pred             EEEEEccCccceeeeehhhhc
Confidence            899999888888888887654

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.79  E-value=1.2e-18  Score=121.88  Aligned_cols=144  Identities=17%  Similarity=0.213  Sum_probs=89.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCc------------------cceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTY------------------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   72 (170)
                      +|+++|.+|+|||||+++++........                  ....+.......+.+  ....+.+|||||..++.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~--~~~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW--KGHKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE--CCEEEEEEECcCHHHHH
Confidence            5899999999999999999753211000                  001111111122222  34678999999998888


Q ss_pred             hhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEE--
Q 030856           73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIE--  150 (170)
Q Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--  150 (170)
                      ......+..+|++++|+|+++.........| ..+..   .++|.++++||+|.....  ..+....+....+.++++  
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~  152 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQ  152 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEE
Confidence            8888899999999999999876544433333 22222   468999999999986532  122333444445554443  


Q ss_pred             eecCCCCChHHH
Q 030856          151 TSAKAGFNIKGC  162 (170)
Q Consensus       151 ~S~~~~~~v~~~  162 (170)
                      ++..++.++..+
T Consensus       153 ip~~~~~~~~~~  164 (268)
T cd04170         153 LPIGEGDDFKGV  164 (268)
T ss_pred             ecccCCCceeEE
Confidence            345555554433

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.79  E-value=3.9e-18  Score=124.72  Aligned_cols=160  Identities=18%  Similarity=0.179  Sum_probs=115.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCC---------------CCCccceeeeeeeEEEEE-eCCeEEEEEEEecCChhh
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF---------------DNTYQATIGIDFLSKTMY-LEDRTVRLQLWDTAGQER   70 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~---------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~g~~~   70 (170)
                      ++-.|++|+..-..|||||.++|+...-               .-+..+.+++..+...+. .++..+.+.++||||+.+
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            5568899999999999999999885321               011222333333222222 235668999999999999


Q ss_pred             hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCH-HHHHHHHHhcCCeEE
Q 030856           71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI-EEGEAKSRELNVMFI  149 (170)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~  149 (170)
                      |.......+..|+++++++|++..-.-+.+..++..+.    .+..++.|+||+|+..++.-.. .+.+++-.....+.+
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i  213 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVI  213 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceE
Confidence            99999999999999999999997655566665555443    4788999999999976553221 222233333344899


Q ss_pred             EeecCCCCChHHHHHHHHhhC
Q 030856          150 ETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       150 ~~S~~~~~~v~~~~~~l~~~i  170 (170)
                      .+||++|.|+++++++|++.|
T Consensus       214 ~vSAK~G~~v~~lL~AII~rV  234 (650)
T KOG0462|consen  214 YVSAKTGLNVEELLEAIIRRV  234 (650)
T ss_pred             EEEeccCccHHHHHHHHHhhC
Confidence            999999999999999999865

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.79  E-value=2.1e-18  Score=116.85  Aligned_cols=163  Identities=19%  Similarity=0.332  Sum_probs=107.2

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEE-EEeCCeEEEEEEEecCChhh-------hhhhh
Q 030856            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKT-MYLEDRTVRLQLWDTAGQER-------FRSLI   75 (170)
Q Consensus         4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~g~~~-------~~~~~   75 (170)
                      .....+++|+++|..|+|||||+|+|+++...+-..-..+.+..... ..+++  -.+.+||+||-++       |+...
T Consensus        34 l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~  111 (296)
T COG3596          34 LTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLY  111 (296)
T ss_pred             hcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHH
Confidence            34567899999999999999999999976553221111111111111 11222  4689999999554       77888


Q ss_pred             hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC--------cccC-------HHHHHHH
Q 030856           76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK--------RQVS-------IEEGEAK  140 (170)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~--------~~~~-------~~~~~~~  140 (170)
                      ..++...|.++++.+..++. +..-..++..+.... -+.++++++|.+|....        ...+       .+.+...
T Consensus       112 ~d~l~~~DLvL~l~~~~dra-L~~d~~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~  189 (296)
T COG3596         112 RDYLPKLDLVLWLIKADDRA-LGTDEDFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL  189 (296)
T ss_pred             HHHhhhccEEEEeccCCCcc-ccCCHHHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH
Confidence            88999999999999998763 233344445554443 34889999999997643        1111       1222222


Q ss_pred             HHhcC-C-eEEEeecCCCCChHHHHHHHHhhC
Q 030856          141 SRELN-V-MFIETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       141 ~~~~~-~-~~~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                      .+... . |++.+|.+.++|++++...+++.+
T Consensus       190 ~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~l  221 (296)
T COG3596         190 GRLFQEVKPVVAVSGRLPWGLKELVRALITAL  221 (296)
T ss_pred             HHHHhhcCCeEEeccccCccHHHHHHHHHHhC
Confidence            22222 2 888899999999999999998754

>PRK00049 elongation factor Tu; Reviewed

Probab=99.78  E-value=2.2e-17  Score=120.98  Aligned_cols=157  Identities=16%  Similarity=0.111  Sum_probs=101.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCC----------------CCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   69 (170)
                      ..+.++|+++|..++|||||+++|++...                +.+..+..+.+..  ...+.....++.+.||||+.
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~~~~~~~i~~iDtPG~~   86 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTA--HVEYETEKRHYAHVDCPGHA   86 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeee--EEEEcCCCeEEEEEECCCHH
Confidence            35679999999999999999999987311                0111223333333  23333344578899999998


Q ss_pred             hhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEE-EEEeCCCCCCCcccC---HHHHHHHHHhc-
Q 030856           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV-LVGNKTDLVEKRQVS---IEEGEAKSREL-  144 (170)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v-vv~nK~D~~~~~~~~---~~~~~~~~~~~-  144 (170)
                      ++.......+..+|++++|+|+.++.. ......+..+..   .++|.+ +++||+|+.+..+..   ..+...+.... 
T Consensus        87 ~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~  162 (396)
T PRK00049         87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence            887777777889999999999986422 122233333332   357865 589999986422211   12333444433 


Q ss_pred             ----CCeEEEeecCCCC----------ChHHHHHHHHh
Q 030856          145 ----NVMFIETSAKAGF----------NIKGCSPTIRR  168 (170)
Q Consensus       145 ----~~~~~~~S~~~~~----------~v~~~~~~l~~  168 (170)
                          +++++++|++++.          ++.++++.|.+
T Consensus       163 ~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~  200 (396)
T PRK00049        163 FPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDS  200 (396)
T ss_pred             CCccCCcEEEeecccccCCCCcccccccHHHHHHHHHh
Confidence                3689999999875          46677777764

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.78  E-value=1.2e-17  Score=115.36  Aligned_cols=153  Identities=20%  Similarity=0.224  Sum_probs=109.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh-------hhhhhhhhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRD   81 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~   81 (170)
                      --+++++|.|++|||||+++|++........+.++....+..+.+++  ..+++.|+||.-+-       ....-...++
T Consensus        63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~  140 (365)
T COG1163          63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARN  140 (365)
T ss_pred             CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence            46899999999999999999999887655455555566666666555  67899999983321       1234455789


Q ss_pred             CcEEEEEEeCCChhh-HHhHHHHHHHHHHhcC---C--------------------------------------------
Q 030856           82 SSVAVVVYDVASRQS-FLNTSKWIDEVRTERG---S--------------------------------------------  113 (170)
Q Consensus        82 ~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~---~--------------------------------------------  113 (170)
                      ||++++|.|+..+.. .+.+...+....-...   +                                            
T Consensus       141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I  220 (365)
T COG1163         141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI  220 (365)
T ss_pred             CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence            999999999986554 5554444433211100   0                                            


Q ss_pred             ------------------CCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhhC
Q 030856          114 ------------------DVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       114 ------------------~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                                        =+|.++|.||.|+..     .++...+.+..  ..+.+||..++|++++.+.|.+.+
T Consensus       221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             ecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence                              248899999999754     45555555555  889999999999999999988653

>PLN03126 Elongation factor Tu; Provisional

Probab=99.78  E-value=2.3e-17  Score=122.78  Aligned_cols=147  Identities=16%  Similarity=0.101  Sum_probs=96.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCC----------------CCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   69 (170)
                      ..+.++|+++|..++|||||+++|++...                ..+..+..+.+.....+.  ....++.++|+||++
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~--~~~~~i~liDtPGh~  155 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE--TENRHYAHVDCPGHA  155 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe--cCCcEEEEEECCCHH
Confidence            45679999999999999999999995211                111222233333333332  334578999999999


Q ss_pred             hhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCccc---CHHHHHHHHHhc-
Q 030856           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSREL-  144 (170)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~~~~~---~~~~~~~~~~~~-  144 (170)
                      +|.......+..+|++++|+|+.+...-+ ...++..+..   .++| +++++||+|+.+..+.   ..++...+.+.. 
T Consensus       156 ~f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g  231 (478)
T PLN03126        156 DYVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE  231 (478)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence            98887777788999999999988643222 2333333322   3577 7788999998653221   122444555543 


Q ss_pred             ----CCeEEEeecCCCCC
Q 030856          145 ----NVMFIETSAKAGFN  158 (170)
Q Consensus       145 ----~~~~~~~S~~~~~~  158 (170)
                          +++++++|+.++.+
T Consensus       232 ~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        232 FPGDDIPIISGSALLALE  249 (478)
T ss_pred             CCcCcceEEEEEcccccc
Confidence                46899999988753

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.78  E-value=1.7e-17  Score=124.88  Aligned_cols=117  Identities=22%  Similarity=0.240  Sum_probs=80.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCC--C--C-------------C---ccceeeeeeeEEEEEeCCeEEEEEEEecC
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--D--N-------------T---YQATIGIDFLSKTMYLEDRTVRLQLWDTA   66 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~--~--~-------------~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   66 (170)
                      .+..+|+++|++++|||||.++|+...-  .  .             +   .....+..+......+....+++.+||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            4668999999999999999999974111  0  0             0   00111222333333344455789999999


Q ss_pred             ChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856           67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        67 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~  127 (170)
                      |+.++......++..+|++|+|+|+++..... ...++.....   .++|+++++||+|+.
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~---~~iPiiv~iNK~D~~  144 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRL---RDTPIFTFINKLDRD  144 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHh---cCCCEEEEEECCccc
Confidence            99999888888899999999999998743221 2333333222   479999999999975

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.78  E-value=8.8e-18  Score=123.45  Aligned_cols=147  Identities=22%  Similarity=0.253  Sum_probs=93.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC--C-------------------------------CccceeeeeeeEEEEEeCCe
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFD--N-------------------------------TYQATIGIDFLSKTMYLEDR   56 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~--~-------------------------------~~~~~~~~~~~~~~~~~~~~   56 (170)
                      ++|+++|+.++|||||+++|+...-.  .                               +.....+.+.....+.  ..
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~--~~   78 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFS--TD   78 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEc--cC
Confidence            58999999999999999999743211  0                               0011122233223332  33


Q ss_pred             EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC---
Q 030856           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS---  133 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~---  133 (170)
                      ..++.++||||++.|.......+..+|++++|+|+.....-+.... +. +....+ ..++++++||+|+.+.....   
T Consensus        79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~-~~-~~~~~~-~~~iivviNK~D~~~~~~~~~~~  155 (406)
T TIGR02034        79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRH-SY-IASLLG-IRHVVLAVNKMDLVDYDEEVFEN  155 (406)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHH-HH-HHHHcC-CCcEEEEEEecccccchHHHHHH
Confidence            4578999999999887766677889999999999875432222111 11 222222 23588899999986433211   


Q ss_pred             -HHHHHHHHHhcC---CeEEEeecCCCCChHH
Q 030856          134 -IEEGEAKSRELN---VMFIETSAKAGFNIKG  161 (170)
Q Consensus       134 -~~~~~~~~~~~~---~~~~~~S~~~~~~v~~  161 (170)
                       .++...+.+..+   ++++++||++|+|+++
T Consensus       156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence             122333334444   4799999999999885

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.78  E-value=2e-17  Score=117.26  Aligned_cols=81  Identities=19%  Similarity=0.355  Sum_probs=54.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCC------ccceeeeeeeEEE---------------EEeCC-eEEEEEEEecCCh-
Q 030856           12 LVFLGDQSVGKTSIITRFMYDKFDNT------YQATIGIDFLSKT---------------MYLED-RTVRLQLWDTAGQ-   68 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~~~~~~------~~~~~~~~~~~~~---------------~~~~~-~~~~~~i~D~~g~-   68 (170)
                      |+++|.|++|||||++++++......      ..|..+..+....               ...++ ..+++++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            58999999999999999998765421      2233332222110               00122 3467999999996 


Q ss_pred             ---hhhhhhhhh---hhcCCcEEEEEEeCC
Q 030856           69 ---ERFRSLIPS---YIRDSSVAVVVYDVA   92 (170)
Q Consensus        69 ---~~~~~~~~~---~~~~~d~~i~v~d~~   92 (170)
                         ++...+...   .++++|++++|+|++
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               444444444   488999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PLN03127 Elongation factor Tu; Provisional

Probab=99.77  E-value=2.9e-17  Score=121.62  Aligned_cols=159  Identities=16%  Similarity=0.100  Sum_probs=99.3

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcC------CC----------CCCccceeeeeeeEEEEEeCCeEEEEEEEecCCh
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYD------KF----------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   68 (170)
                      ...+.++|+++|..++|||||+++|.+.      ..          +.+..+..+.+.....  +.....++.++||||+
T Consensus        57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~--~~~~~~~i~~iDtPGh  134 (447)
T PLN03127         57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVE--YETAKRHYAHVDCPGH  134 (447)
T ss_pred             cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEE--EcCCCeEEEEEECCCc
Confidence            3456899999999999999999999732      10          1112233333433333  3334457899999999


Q ss_pred             hhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCcccC---HHHHHHHHHhc
Q 030856           69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVS---IEEGEAKSREL  144 (170)
Q Consensus        69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~~~~~~---~~~~~~~~~~~  144 (170)
                      ..|.......+..+|++++|+|+.+...- .....+..+..   .++| +++++||+|+.+..+..   ..+.+++....
T Consensus       135 ~~f~~~~~~g~~~aD~allVVda~~g~~~-qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~  210 (447)
T PLN03127        135 ADYVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFY  210 (447)
T ss_pred             cchHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHh
Confidence            88877666667789999999998764221 12222222222   3578 57889999986532211   11222333322


Q ss_pred             -----CCeEEEeecC---CCCC-------hHHHHHHHHhh
Q 030856          145 -----NVMFIETSAK---AGFN-------IKGCSPTIRRL  169 (170)
Q Consensus       145 -----~~~~~~~S~~---~~~~-------v~~~~~~l~~~  169 (170)
                           .++++++|+.   ++.|       +.+++++|.+.
T Consensus       211 ~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~  250 (447)
T PLN03127        211 KFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY  250 (447)
T ss_pred             CCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence                 3588888876   4555       67777777653

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.77  E-value=2.8e-17  Score=114.55  Aligned_cols=112  Identities=20%  Similarity=0.225  Sum_probs=77.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC------------------CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFD------------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   72 (170)
                      +|+++|.+++|||||+++|+.....                  .+..+..+.+.....+.+  ...++.++||||..++.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW--KDHRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE--CCEEEEEEECCCcHHHH
Confidence            6899999999999999999742110                  111122233333333333  34678999999999888


Q ss_pred             hhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856           73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~  128 (170)
                      ..+...+..+|++++|+|+.+...-+. ...+..+..   .++|+++++||+|+.+
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~  130 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence            888899999999999999986432222 222233322   4689999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.77  E-value=3.2e-17  Score=120.09  Aligned_cols=153  Identities=18%  Similarity=0.160  Sum_probs=118.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .++.-|.++|.-..|||||++++.....-......++.......++.+. +-+++|.||||+..|..|...-..-+|+++
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~-G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV  229 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS-GKSITFLDTPGHAAFSAMRARGANVTDIVV  229 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCC-CCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence            4567789999999999999999998877666566666666666666663 368999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC---------CeEEEeecCCCC
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN---------VMFIETSAKAGF  157 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~S~~~~~  157 (170)
                      +|+.+.|.-.-+.+    +.+......++|+++.+||+|.++   .+.+...+....+|         .+++++||++|+
T Consensus       230 LVVAadDGVmpQT~----EaIkhAk~A~VpiVvAinKiDkp~---a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~  302 (683)
T KOG1145|consen  230 LVVAADDGVMPQTL----EAIKHAKSANVPIVVAINKIDKPG---ANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE  302 (683)
T ss_pred             EEEEccCCccHhHH----HHHHHHHhcCCCEEEEEeccCCCC---CCHHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence            99999874222221    223344446899999999999754   33444444444433         489999999999


Q ss_pred             ChHHHHHHHH
Q 030856          158 NIKGCSPTIR  167 (170)
Q Consensus       158 ~v~~~~~~l~  167 (170)
                      |++.|.+++.
T Consensus       303 nl~~L~eail  312 (683)
T KOG1145|consen  303 NLDLLEEAIL  312 (683)
T ss_pred             ChHHHHHHHH
Confidence            9999988875

>PRK13351 elongation factor G; Reviewed

Probab=99.77  E-value=1.5e-17  Score=129.63  Aligned_cols=121  Identities=21%  Similarity=0.271  Sum_probs=83.8

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCC-------------CCccc---eeeeeeeEEEEEeCCeEEEEEEEecCC
Q 030856            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFD-------------NTYQA---TIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (170)
Q Consensus         4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~-------------~~~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~g   67 (170)
                      ++..+..+|+++|..++|||||+++|+.....             .++.+   ..+.+.............++.+|||||
T Consensus         3 ~~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG   82 (687)
T PRK13351          3 MPLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPG   82 (687)
T ss_pred             CccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCC
Confidence            34556789999999999999999999853210             00000   011111111122223457899999999


Q ss_pred             hhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856           68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~  128 (170)
                      +.++......++..+|++++|+|+++....+....| ..+..   .++|+++++||+|+..
T Consensus        83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~  139 (687)
T PRK13351         83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG  139 (687)
T ss_pred             cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence            999998899999999999999999987665554444 33322   4689999999999863

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.77  E-value=1.8e-17  Score=122.85  Aligned_cols=151  Identities=21%  Similarity=0.216  Sum_probs=97.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCC--CC-----------------------------CCccceeeeeeeEEEEEeC
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDK--FD-----------------------------NTYQATIGIDFLSKTMYLE   54 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~   54 (170)
                      ..+.++|+++|+.++|||||+.+|+...  ..                             .+..+..+.+..  .....
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~--~~~~~   81 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIA--LWKFE   81 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEee--eEEEc
Confidence            3567999999999999999999988521  10                             011122222332  23334


Q ss_pred             CeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChh---hH---HhHHHHHHHHHHhcCCCCe-EEEEEeCCCCC
Q 030856           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SF---LNTSKWIDEVRTERGSDVI-IVLVGNKTDLV  127 (170)
Q Consensus        55 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~  127 (170)
                      .....+.|+|+||+.+|.......+..+|++++|+|++...   .+   ....+.+..+..   .++| +++++||+|..
T Consensus        82 ~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~  158 (446)
T PTZ00141         82 TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDK  158 (446)
T ss_pred             cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEccccc
Confidence            45578999999999999888888889999999999998642   11   122222222222   3565 67899999953


Q ss_pred             C--CcccC----HHHHHHHHHhc-----CCeEEEeecCCCCChHH
Q 030856          128 E--KRQVS----IEEGEAKSREL-----NVMFIETSAKAGFNIKG  161 (170)
Q Consensus       128 ~--~~~~~----~~~~~~~~~~~-----~~~~~~~S~~~~~~v~~  161 (170)
                      .  ..+..    .++...+....     +++++++|+.+|+|+.+
T Consensus       159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        159 TVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             cchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            2  11111    23334443333     35899999999999864

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.77  E-value=2.7e-17  Score=127.03  Aligned_cols=153  Identities=21%  Similarity=0.218  Sum_probs=95.5

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCC---------------------------------ccceeeeeeeEEE
Q 030856            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT---------------------------------YQATIGIDFLSKT   50 (170)
Q Consensus         4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~   50 (170)
                      ......++|+++|.+++|||||+++|+.....-.                                 .....+.+.....
T Consensus        19 ~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~   98 (632)
T PRK05506         19 HERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRY   98 (632)
T ss_pred             ccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeE
Confidence            3445679999999999999999999996432100                                 0011112222222


Q ss_pred             EEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc
Q 030856           51 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (170)
Q Consensus        51 ~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~  130 (170)
                      +  .....++.++||||++.+.......+..+|++++|+|+.....-+. ...+..+.. . ...++++++||+|+.+..
T Consensus        99 ~--~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~-~-~~~~iivvvNK~D~~~~~  173 (632)
T PRK05506         99 F--ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASL-L-GIRHVVLAVNKMDLVDYD  173 (632)
T ss_pred             E--ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHH-h-CCCeEEEEEEecccccch
Confidence            2  2233568899999998887666667889999999999875422111 111122222 2 135788899999986422


Q ss_pred             ccCH----HHHHHHHHhcCC---eEEEeecCCCCChHH
Q 030856          131 QVSI----EEGEAKSRELNV---MFIETSAKAGFNIKG  161 (170)
Q Consensus       131 ~~~~----~~~~~~~~~~~~---~~~~~S~~~~~~v~~  161 (170)
                      ....    .+...+....++   +++++||++|.|+++
T Consensus       174 ~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        174 QEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             hHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            2111    223333444453   699999999999874

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.76  E-value=1.8e-17  Score=115.36  Aligned_cols=157  Identities=17%  Similarity=0.112  Sum_probs=103.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh----hhh---hhhhhcCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----RSL---IPSYIRDS   82 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~---~~~~~~~~   82 (170)
                      -|.++|.|++|||||++++...+.. ..|..|+ .....-.+.. ...-.+.+-|.||.-+-    ..+   --..+.+|
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTT-L~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt  238 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTT-LVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT  238 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCcccc-ccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence            3689999999999999999987654 4443333 2222222222 23346889999993321    111   12225679


Q ss_pred             cEEEEEEeCCChh---hHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCe-EEEeecCCC
Q 030856           83 SVAVVVYDVASRQ---SFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAG  156 (170)
Q Consensus        83 d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~--~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~  156 (170)
                      .+++.|+|++..+   ..++......++..+..  .+.|.++|+||+|+....+......+.+.+..+.. ++++|+.++
T Consensus       239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~  318 (369)
T COG0536         239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR  318 (369)
T ss_pred             heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence            9999999998533   35555555555555532  57899999999997655444444455555555653 223999999


Q ss_pred             CChHHHHHHHHhh
Q 030856          157 FNIKGCSPTIRRL  169 (170)
Q Consensus       157 ~~v~~~~~~l~~~  169 (170)
                      +|++++...+.+.
T Consensus       319 ~g~~~L~~~~~~~  331 (369)
T COG0536         319 EGLDELLRALAEL  331 (369)
T ss_pred             cCHHHHHHHHHHH
Confidence            9999999888764

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.76  E-value=3.7e-18  Score=110.99  Aligned_cols=120  Identities=18%  Similarity=0.351  Sum_probs=74.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhh---hhcCCcE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS---YIRDSSV   84 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~---~~~~~d~   84 (170)
                      ++-.|+++|+.|+|||+|+.+|..+.......+. ...... .. .......+.++|+||+.+.+.....   +...+.+
T Consensus         2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~~-~~-~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~   78 (181)
T PF09439_consen    2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIAY-NV-NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG   78 (181)
T ss_dssp             ---EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEEC-CG-SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred             CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCceE-Ee-ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence            4567999999999999999999998654433322 211111 10 1223346899999999988775444   4788999


Q ss_pred             EEEEEeCCC-hhhHHhHHHHHHHHHHhc---CCCCeEEEEEeCCCCCCCc
Q 030856           85 AVVVYDVAS-RQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVEKR  130 (170)
Q Consensus        85 ~i~v~d~~~-~~~~~~~~~~~~~~~~~~---~~~~~~vvv~nK~D~~~~~  130 (170)
                      ||||+|.+. +..+....+++-.+....   ...+|+++++||.|+...+
T Consensus        79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~  128 (181)
T PF09439_consen   79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK  128 (181)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred             EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence            999999974 445666655555543332   3679999999999997654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.75  E-value=6.6e-17  Score=119.63  Aligned_cols=162  Identities=17%  Similarity=0.108  Sum_probs=102.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCC---CCccceeeeeeeEEEE---------------EeC-------------
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSKTM---------------YLE-------------   54 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~---~~~~~~~~~~~~~~~~---------------~~~-------------   54 (170)
                      ...+++|+++|.-..|||||+.+|.+....   .+..+..+.+......               ...             
T Consensus        31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (460)
T PTZ00327         31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG  110 (460)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence            456799999999999999999999974331   1111111111000000               000             


Q ss_pred             ---CeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc
Q 030856           55 ---DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        55 ---~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~  131 (170)
                         .....+.++|+||++.|.......+..+|++++|+|+.++.......+.+. +....+ -.++++|+||+|+.+...
T Consensus       111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lg-i~~iIVvlNKiDlv~~~~  188 (460)
T PTZ00327        111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIMK-LKHIIILQNKIDLVKEAQ  188 (460)
T ss_pred             ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHcC-CCcEEEEEecccccCHHH
Confidence               002368999999999988777777889999999999986311111222222 222221 246888999999864322


Q ss_pred             c--CHHHHHHHHHh---cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          132 V--SIEEGEAKSRE---LNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       132 ~--~~~~~~~~~~~---~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      .  ..++.+++...   .+.+++++||++|.|+++|++.|.+.
T Consensus       189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~  231 (460)
T PTZ00327        189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQ  231 (460)
T ss_pred             HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhh
Confidence            1  12233333332   35699999999999999999998753

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.75  E-value=6.4e-17  Score=115.17  Aligned_cols=154  Identities=23%  Similarity=0.287  Sum_probs=104.4

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCccceeeeeeeEEEEEe
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKF-------------------------------DNTYQATIGIDFLSKTMYL   53 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~   53 (170)
                      ....+++++++|+..+|||||+-+|+.+.-                               .++..+..+++.....  .
T Consensus         3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~--f   80 (428)
T COG5256           3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSK--F   80 (428)
T ss_pred             CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEE--e
Confidence            346789999999999999999999986411                               1111222233333333  3


Q ss_pred             CCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChh---h--HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856           54 EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---S--FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        54 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~--~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~  128 (170)
                      +...+.++|.|+||+.+|-.....-+..+|+.|+|+|+.+.+   +  .+-..+....+.+..+ -..+++++||+|..+
T Consensus        81 et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~  159 (428)
T COG5256          81 ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVS  159 (428)
T ss_pred             ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccc
Confidence            334467999999999888888888888999999999998763   1  1223344444555544 345788889999987


Q ss_pred             CcccCHHHHH----HHHHhcC-----CeEEEeecCCCCChHH
Q 030856          129 KRQVSIEEGE----AKSRELN-----VMFIETSAKAGFNIKG  161 (170)
Q Consensus       129 ~~~~~~~~~~----~~~~~~~-----~~~~~~S~~~~~~v~~  161 (170)
                      .++-..++..    .+.+..|     ++|+++|+..|+|+.+
T Consensus       160 wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         160 WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            5544433332    2333333     5799999999999864

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.75  E-value=5e-17  Score=117.38  Aligned_cols=162  Identities=18%  Similarity=0.156  Sum_probs=120.9

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCC---------------CCCccceeeeeeeEEEEEe---CCeEEEEEEEe
Q 030856            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKF---------------DNTYQATIGIDFLSKTMYL---EDRTVRLQLWD   64 (170)
Q Consensus         3 ~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D   64 (170)
                      .++..+-.|..|+..-..|||||..+++....               +-+..+..++..+.....+   ++..+.++++|
T Consensus         3 ~~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlID   82 (603)
T COG0481           3 FTPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLID   82 (603)
T ss_pred             ccchhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcC
Confidence            44555667889999999999999999885311               1123344444444444433   45789999999


Q ss_pred             cCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhc
Q 030856           65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL  144 (170)
Q Consensus        65 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~  144 (170)
                      |||+-+|.-.....+..|-+.++++|++..-.-+.+.+.+..+.    .+.-++-|+||+|+..+...  .-.++.....
T Consensus        83 TPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Adpe--rvk~eIe~~i  156 (603)
T COG0481          83 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAADPE--RVKQEIEDII  156 (603)
T ss_pred             CCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCCHH--HHHHHHHHHh
Confidence            99999998888888999999999999998766666777666654    36778889999999754432  2233444455


Q ss_pred             CC---eEEEeecCCCCChHHHHHHHHhhC
Q 030856          145 NV---MFIETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       145 ~~---~~~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                      |+   ..+.|||++|.|++++++.|+++|
T Consensus       157 Gid~~dav~~SAKtG~gI~~iLe~Iv~~i  185 (603)
T COG0481         157 GIDASDAVLVSAKTGIGIEDVLEAIVEKI  185 (603)
T ss_pred             CCCcchheeEecccCCCHHHHHHHHHhhC
Confidence            65   679999999999999999999865

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.74  E-value=1.8e-16  Score=97.43  Aligned_cols=106  Identities=20%  Similarity=0.251  Sum_probs=68.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh---------hhhhhhhhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIPSYIR   80 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~   80 (170)
                      +|+++|.+|+|||||+|+|++.... ....+..+..........++..  +.++||||....         .......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            6899999999999999999986432 2222223223333444455544  579999995321         112333357


Q ss_pred             CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeC
Q 030856           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNK  123 (170)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK  123 (170)
                      .+|++++|+|.+++.. +.....+..+.    .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence            8999999999877322 22333334442    57999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.74  E-value=1.5e-16  Score=106.50  Aligned_cols=156  Identities=10%  Similarity=0.115  Sum_probs=94.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCc--cceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh--------h---hh
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTY--QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------L---IP   76 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~---~~   76 (170)
                      ++|+++|.+|+|||||+|++++.......  .+..+.+.........+  .++.++||||..+...        +   ..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            58999999999999999999987654222  12222233333333333  4789999999543211        1   11


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCC--CCeEEEEEeCCCCCCCccc------CHHHHHHHHHhcCCeE
Q 030856           77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS--DVIIVLVGNKTDLVEKRQV------SIEEGEAKSRELNVMF  148 (170)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~vvv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~  148 (170)
                      ....+.|++++|+++.+. +- .....+..+...+++  -.+++++.|+.|......+      .....+.+.+..+-.+
T Consensus        79 ~~~~g~~~illVi~~~~~-t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~  156 (196)
T cd01852          79 LSAPGPHAFLLVVPLGRF-TE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY  156 (196)
T ss_pred             hcCCCCEEEEEEEECCCc-CH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence            124578999999998762 21 223334444444432  2468888999997543221      1234455555545445


Q ss_pred             EEee-----cCCCCChHHHHHHHHhh
Q 030856          149 IETS-----AKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       149 ~~~S-----~~~~~~v~~~~~~l~~~  169 (170)
                      +..+     +..+.+++++++.+.+.
T Consensus       157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~  182 (196)
T cd01852         157 VAFNNKAKGEEQEQQVKELLAKVESM  182 (196)
T ss_pred             EEEeCCCCcchhHHHHHHHHHHHHHH
Confidence            4444     45577888888887653

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=2.3e-17  Score=119.41  Aligned_cols=161  Identities=19%  Similarity=0.212  Sum_probs=107.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh-hhh--------hhh
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRS--------LIP   76 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~--------~~~   76 (170)
                      .+.++|+|+|+||+|||||+|.|...... .+..+.++.|.....++++|  +++.+.||+|..+ -..        ..+
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~  343 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERAR  343 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHH
Confidence            34689999999999999999999987665 56677777788888887766  6789999999554 111        123


Q ss_pred             hhhcCCcEEEEEEeCC--ChhhHHhHHHHHHHHHHhc------CCCCeEEEEEeCCCCCCC-cccCHHHHHHH-HHhc-C
Q 030856           77 SYIRDSSVAVVVYDVA--SRQSFLNTSKWIDEVRTER------GSDVIIVLVGNKTDLVEK-RQVSIEEGEAK-SREL-N  145 (170)
Q Consensus        77 ~~~~~~d~~i~v~d~~--~~~~~~~~~~~~~~~~~~~------~~~~~~vvv~nK~D~~~~-~~~~~~~~~~~-~~~~-~  145 (170)
                      ..+..+|++++|+|+.  +-++-..+...+.....-.      ..+.+++++.||.|+... ++..-.-.... +..+ .
T Consensus       344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~  423 (531)
T KOG1191|consen  344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSV  423 (531)
T ss_pred             HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcc
Confidence            3467899999999983  3232223333333332211      134789999999998654 12111000111 1111 1


Q ss_pred             C-eEEEeecCCCCChHHHHHHHHhh
Q 030856          146 V-MFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       146 ~-~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      . ...++|+++++|++.+.+.+.+.
T Consensus       424 ~~i~~~vs~~tkeg~~~L~~all~~  448 (531)
T KOG1191|consen  424 FPIVVEVSCTTKEGCERLSTALLNI  448 (531)
T ss_pred             cceEEEeeechhhhHHHHHHHHHHH
Confidence            2 45569999999999999988754

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.73  E-value=2.6e-16  Score=122.63  Aligned_cols=148  Identities=16%  Similarity=0.173  Sum_probs=95.7

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCC----C--------------CccceeeeeeeEEEEEeCCeEEEEEE
Q 030856            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFD----N--------------TYQATIGIDFLSKTMYLEDRTVRLQL   62 (170)
Q Consensus         1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~----~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i   62 (170)
                      |......+-.+|+++|.+++|||||+++|++....    .              +..+..+.+.....+.++  ..++.+
T Consensus         2 ~~~~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~l   79 (689)
T TIGR00484         2 ARTTDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINI   79 (689)
T ss_pred             CCcCccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEE
Confidence            44555666789999999999999999999742111    0              001222333333334443  467999


Q ss_pred             EecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHH
Q 030856           63 WDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR  142 (170)
Q Consensus        63 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~  142 (170)
                      |||||+.++.......+..+|++++|+|+++....+....| ..+..   .++|+++++||+|+.....  ......+..
T Consensus        80 iDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~~~~--~~~~~~i~~  153 (689)
T TIGR00484        80 IDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR---YEVPRIAFVNKMDKTGANF--LRVVNQIKQ  153 (689)
T ss_pred             EECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH---cCCCEEEEEECCCCCCCCH--HHHHHHHHH
Confidence            99999998888888889999999999999875444433222 22322   3689999999999875331  122333333


Q ss_pred             hcCC----eEEEeecCCC
Q 030856          143 ELNV----MFIETSAKAG  156 (170)
Q Consensus       143 ~~~~----~~~~~S~~~~  156 (170)
                      ..+.    ..+++|+..+
T Consensus       154 ~l~~~~~~~~ipis~~~~  171 (689)
T TIGR00484       154 RLGANAVPIQLPIGAEDN  171 (689)
T ss_pred             HhCCCceeEEeccccCCC
Confidence            3332    3566666555

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=1.3e-16  Score=104.19  Aligned_cols=157  Identities=22%  Similarity=0.329  Sum_probs=104.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhc---CCcE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR---DSSV   84 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~d~   84 (170)
                      ++-.|+++|+.+||||+|+-.|..+.......+-.+ +  .......+  -.++++|.||+.+.+.....+++   .+-+
T Consensus        37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiep-n--~a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~aka  111 (238)
T KOG0090|consen   37 KQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEP-N--EATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAKA  111 (238)
T ss_pred             cCCcEEEEecCCCCceeeeeehhcCCccCeeeeecc-c--eeeEeecC--cceEEEeCCCcHHHHHHHHHHcccccccee
Confidence            346799999999999999999998855433222111 1  11221222  23799999999999998888888   6899


Q ss_pred             EEEEEeCCC-hhhHHhHHHHHHHHHHhc---CCCCeEEEEEeCCCCCCCcccCH------HHH-----------------
Q 030856           85 AVVVYDVAS-RQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVEKRQVSI------EEG-----------------  137 (170)
Q Consensus        85 ~i~v~d~~~-~~~~~~~~~~~~~~~~~~---~~~~~~vvv~nK~D~~~~~~~~~------~~~-----------------  137 (170)
                      ++||+|..- +.-..++..++-.+....   ..+.|+++++||.|+..++....      .+.                 
T Consensus       112 iVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed  191 (238)
T KOG0090|consen  112 IVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDED  191 (238)
T ss_pred             EEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccc
Confidence            999999763 333444445444443333   36789999999999864322100      000                 


Q ss_pred             -------------HHHH--HhcCCeEEEeecCCCCChHHHHHHHHhhC
Q 030856          138 -------------EAKS--RELNVMFIETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       138 -------------~~~~--~~~~~~~~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                                   .+|+  ....+.|.++|++++ +++++-+|+.+++
T Consensus       192 ~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l  238 (238)
T KOG0090|consen  192 IAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL  238 (238)
T ss_pred             ccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence                         0011  112457899999999 8999999998864

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.73  E-value=2e-16  Score=109.54  Aligned_cols=160  Identities=19%  Similarity=0.258  Sum_probs=118.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEE--eCCeEEEEEEEecCChhhhhhhhhhhhcCC---
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMY--LEDRTVRLQLWDTAGQERFRSLIPSYIRDS---   82 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~---   82 (170)
                      ..-+|+++|..|+||||||.+|.+..   ...+..+.++....+.  ..+...++.+|-..|...+..+....+...   
T Consensus        51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a  127 (473)
T KOG3905|consen   51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA  127 (473)
T ss_pred             CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence            44689999999999999999999875   3334444444444332  233456788999999887777777666654   


Q ss_pred             -cEEEEEEeCCChh-hHHhHHHHHHHHHHhcCC-----------------------------------------------
Q 030856           83 -SVAVVVYDVASRQ-SFLNTSKWIDEVRTERGS-----------------------------------------------  113 (170)
Q Consensus        83 -d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~-----------------------------------------------  113 (170)
                       .++|++.|+++|. -++.++.|...+..+...                                               
T Consensus       128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~  207 (473)
T KOG3905|consen  128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH  207 (473)
T ss_pred             ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence             4889999999994 466778887665443221                                               


Q ss_pred             --------------CCeEEEEEeCCCCC----CC---cc----cCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856          114 --------------DVIIVLVGNKTDLV----EK---RQ----VSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus       114 --------------~~~~vvv~nK~D~~----~~---~~----~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                                    ++|++||+||+|..    .+   +.    .-...++.||.++|...+.+|+++..|++-+..+|.+
T Consensus       208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh  287 (473)
T KOG3905|consen  208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH  287 (473)
T ss_pred             cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence                          67999999999983    11   11    2245678899999999999999999999999999987


Q ss_pred             hC
Q 030856          169 LI  170 (170)
Q Consensus       169 ~i  170 (170)
                      ++
T Consensus       288 r~  289 (473)
T KOG3905|consen  288 RS  289 (473)
T ss_pred             Hh
Confidence            53

>PRK12739 elongation factor G; Reviewed

Probab=99.72  E-value=4.3e-16  Score=121.38  Aligned_cols=118  Identities=19%  Similarity=0.206  Sum_probs=82.0

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCC------------------CCccceeeeeeeEEEEEeCCeEEEEEEEecC
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFD------------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   66 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   66 (170)
                      ...+-.+|+++|.+++|||||+++|+.....                  .+..+..+.+.....+.++  ..++.++|||
T Consensus         4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTP   81 (691)
T PRK12739          4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTP   81 (691)
T ss_pred             CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCC
Confidence            4456789999999999999999999753110                  0112233333334444443  4678999999


Q ss_pred             ChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856           67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        67 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~  128 (170)
                      |+.++.......+..+|++++|+|+.+...-+.. ..+..+..   .++|+++++||+|+..
T Consensus        82 G~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         82 GHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             CHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence            9998888888889999999999999865332222 22222222   4689999999999863

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.72  E-value=5.9e-16  Score=112.91  Aligned_cols=83  Identities=20%  Similarity=0.313  Sum_probs=55.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEE---------------------eC-CeEEEEEEEecCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMY---------------------LE-DRTVRLQLWDTAG   67 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~i~D~~g   67 (170)
                      ++|+++|.|++|||||+|+|++........+..+.+.......                     .+ ....++++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            6899999999999999999998766532222222222211111                     11 1236789999999


Q ss_pred             h----hhhhhhhhhh---hcCCcEEEEEEeCC
Q 030856           68 Q----ERFRSLIPSY---IRDSSVAVVVYDVA   92 (170)
Q Consensus        68 ~----~~~~~~~~~~---~~~~d~~i~v~d~~   92 (170)
                      .    .....+...+   ++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            4    2233344444   78999999999997

>TIGR00503 prfC peptide chain release factor 3

Probab=99.72  E-value=1.2e-16  Score=120.43  Aligned_cols=119  Identities=21%  Similarity=0.247  Sum_probs=81.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcC--CCC--C----------------CccceeeeeeeEEEEEeCCeEEEEEEEec
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYD--KFD--N----------------TYQATIGIDFLSKTMYLEDRTVRLQLWDT   65 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~--~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~   65 (170)
                      ..+..+|+++|.+++|||||+++|+..  ...  .                ......+..+......++...+.+.+|||
T Consensus         8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT   87 (527)
T TIGR00503         8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT   87 (527)
T ss_pred             hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence            346789999999999999999998632  110  0                00112233333344445555688999999


Q ss_pred             CChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856           66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        66 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~  128 (170)
                      ||+.++.......+..+|++|+|+|+++.-. .....++.....   .++|+++++||+|+..
T Consensus        88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~  146 (527)
T TIGR00503        88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             CChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence            9999888877778899999999999986411 112333333222   4689999999999854

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK09866 hypothetical protein; Provisional

Probab=99.69  E-value=3.8e-15  Score=112.18  Aligned_cols=109  Identities=16%  Similarity=0.202  Sum_probs=72.4

Q ss_pred             EEEEEEecCChhh-----hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc
Q 030856           58 VRLQLWDTAGQER-----FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV  132 (170)
Q Consensus        58 ~~~~i~D~~g~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~  132 (170)
                      ..+.|.||||...     ........+..+|+++||+|..+..+..+ ...+..+.. .+...|+++|+||+|..+....
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk-~~K~~PVILVVNKIDl~dreed  307 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILA-VGQSVPLYVLVNKFDQQDRNSD  307 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHh-cCCCCCEEEEEEcccCCCcccc
Confidence            3578999999653     22234456899999999999986433222 222233333 2223699999999998543332


Q ss_pred             CHHHHHHHHHhc----C---CeEEEeecCCCCChHHHHHHHHh
Q 030856          133 SIEEGEAKSREL----N---VMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus       133 ~~~~~~~~~~~~----~---~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ..+....+....    +   ..++++||++|.|++++++.|.+
T Consensus       308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            244444443211    2   27999999999999999999876

>PRK00007 elongation factor G; Reviewed

Probab=99.68  E-value=1.9e-15  Score=117.82  Aligned_cols=148  Identities=17%  Similarity=0.174  Sum_probs=94.2

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCC------------------CCccceeeeeeeEEEEEeCCeEEEEEE
Q 030856            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFD------------------NTYQATIGIDFLSKTMYLEDRTVRLQL   62 (170)
Q Consensus         1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i   62 (170)
                      |...+..+-.+|+++|.+++|||||+++|++....                  .+..+..+.+.....+.+.  ..++.+
T Consensus         2 ~~~~~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~l   79 (693)
T PRK00007          2 ARETPLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINI   79 (693)
T ss_pred             CCcCcccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEE
Confidence            34444566789999999999999999999742110                  0012233334334444443  467899


Q ss_pred             EecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHH
Q 030856           63 WDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR  142 (170)
Q Consensus        63 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~  142 (170)
                      +||||+.++.......+..+|++++|+|+...-.-+....| ..+..   .+.|.++++||+|+....  .....+++..
T Consensus        80 iDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~---~~~p~iv~vNK~D~~~~~--~~~~~~~i~~  153 (693)
T PRK00007         80 IDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADK---YKVPRIAFVNKMDRTGAD--FYRVVEQIKD  153 (693)
T ss_pred             EeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHH---cCCCEEEEEECCCCCCCC--HHHHHHHHHH
Confidence            99999988877777788999999999998765333332222 22222   368889999999987533  1222333333


Q ss_pred             hcCC----eEEEeecCCC
Q 030856          143 ELNV----MFIETSAKAG  156 (170)
Q Consensus       143 ~~~~----~~~~~S~~~~  156 (170)
                      ..+.    ..+++|+..+
T Consensus       154 ~l~~~~~~~~ipisa~~~  171 (693)
T PRK00007        154 RLGANPVPIQLPIGAEDD  171 (693)
T ss_pred             HhCCCeeeEEecCccCCc
Confidence            3332    4566666655

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.67  E-value=7.9e-16  Score=92.22  Aligned_cols=136  Identities=21%  Similarity=0.272  Sum_probs=95.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh----hhhhhhhhhhcCCcEEE
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----RFRSLIPSYIRDSSVAV   86 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~d~~i   86 (170)
                      |++++|..|+|||||.+++.+...  .+..|..+++       ...    -.+||||.-    .+..........+|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~-------~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEF-------NDK----GDIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchh--hhcccceeec-------cCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            689999999999999999987654  2223333221       111    256999832    33333444567899999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCCChHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~  165 (170)
                      ++-+++++++--..     .+...  -..|++=|++|.|+.+.  .+.+..+++..+-|. ++|++|+.++.|+++++..
T Consensus        70 ~v~~and~~s~f~p-----~f~~~--~~k~vIgvVTK~DLaed--~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~  140 (148)
T COG4917          70 YVHAANDPESRFPP-----GFLDI--GVKKVIGVVTKADLAED--ADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY  140 (148)
T ss_pred             eeecccCccccCCc-----ccccc--cccceEEEEecccccch--HhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence            99999987542110     11111  23558888899999763  345777888888898 9999999999999999999


Q ss_pred             HHh
Q 030856          166 IRR  168 (170)
Q Consensus       166 l~~  168 (170)
                      |..
T Consensus       141 L~~  143 (148)
T COG4917         141 LAS  143 (148)
T ss_pred             HHh
Confidence            864

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.66  E-value=5.5e-15  Score=117.76  Aligned_cols=142  Identities=21%  Similarity=0.193  Sum_probs=94.9

Q ss_pred             CCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCe-----------E-----EEEEEEecCChhhhhhhhhhhhcCCc
Q 030856           20 VGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR-----------T-----VRLQLWDTAGQERFRSLIPSYIRDSS   83 (170)
Q Consensus        20 ~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-----~~~~i~D~~g~~~~~~~~~~~~~~~d   83 (170)
                      ++||||++++.+...........+.+.....+..+..           .     -.+.||||||++.+..+....+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            4599999999998776554555544444443333210           0     13899999999999888888888999


Q ss_pred             EEEEEEeCCC---hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC------------HHH-HHHH-------
Q 030856           84 VAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS------------IEE-GEAK-------  140 (170)
Q Consensus        84 ~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~------------~~~-~~~~-------  140 (170)
                      ++++|+|+++   +.+++.+.    .+..   .++|+++|+||+|+.......            .+. ..++       
T Consensus       552 ivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v  624 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL  624 (1049)
T ss_pred             EEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            9999999986   34444332    2222   368999999999986422110            000 0000       


Q ss_pred             ---HHh---------------cCCeEEEeecCCCCChHHHHHHHHh
Q 030856          141 ---SRE---------------LNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus       141 ---~~~---------------~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                         ...               ..++++++||++|+|+++++.+|..
T Consensus       625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~  670 (1049)
T PRK14845        625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG  670 (1049)
T ss_pred             hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence               011               1358999999999999999988753

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.66  E-value=7.1e-15  Score=108.82  Aligned_cols=161  Identities=20%  Similarity=0.298  Sum_probs=115.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeC--CeEEEEEEEecCChhhhhhhhhhhhcC---
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE--DRTVRLQLWDTAGQERFRSLIPSYIRD---   81 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~---   81 (170)
                      ...-+|+|+|..++|||||+.+|.+..   .+.++.+.++....+.-+  ....++.+|.+.|...+..+....+..   
T Consensus        23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l   99 (472)
T PF05783_consen   23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL   99 (472)
T ss_pred             CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence            345789999999999999999987643   334555666655554322  234578999999877777776665543   


Q ss_pred             -CcEEEEEEeCCChhh-HHhHHHHHHHHHHhcCC----------------------------------------------
Q 030856           82 -SSVAVVVYDVASRQS-FLNTSKWIDEVRTERGS----------------------------------------------  113 (170)
Q Consensus        82 -~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~----------------------------------------------  113 (170)
                       .-.+++|.|.+.|.. ++.+..|+..+..+...                                              
T Consensus       100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~  179 (472)
T PF05783_consen  100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD  179 (472)
T ss_pred             cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence             358999999999855 44556665443221100                                              


Q ss_pred             ----------------CCeEEEEEeCCCCCCC----c-------ccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856          114 ----------------DVIIVLVGNKTDLVEK----R-------QVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus       114 ----------------~~~~vvv~nK~D~~~~----~-------~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                                      ++|++||++|+|....    .       ..-...++.+|..+|+.++.+|+++..+++.+..+|
T Consensus       180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi  259 (472)
T PF05783_consen  180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI  259 (472)
T ss_pred             ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence                            4799999999997421    1       122355788889999999999999999999999998


Q ss_pred             HhhC
Q 030856          167 RRLI  170 (170)
Q Consensus       167 ~~~i  170 (170)
                      .+.+
T Consensus       260 ~h~l  263 (472)
T PF05783_consen  260 LHRL  263 (472)
T ss_pred             HHHh
Confidence            8753

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PRK12740 elongation factor G; Reviewed

Probab=99.65  E-value=7.9e-15  Score=114.30  Aligned_cols=107  Identities=21%  Similarity=0.248  Sum_probs=73.7

Q ss_pred             EcCCCCCHHHHHHHHhcCCCC----C--------------CccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhh
Q 030856           15 LGDQSVGKTSIITRFMYDKFD----N--------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP   76 (170)
Q Consensus        15 ~G~~~~GKStll~~l~~~~~~----~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   76 (170)
                      +|++++|||||+++|+.....    .              +..+..+.......+.+  ..+.+.+|||||+.++.....
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~--~~~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW--KGHKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE--CCEEEEEEECCCcHHHHHHHH
Confidence            699999999999999643211    0              00122222222333333  347899999999998888888


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856           77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~  127 (170)
                      ..+..+|++++++|+++.........| ..+..   .++|+++|+||+|+.
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~  125 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA  125 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence            889999999999999876554443333 22222   468999999999975

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.65  E-value=1.6e-15  Score=110.33  Aligned_cols=161  Identities=19%  Similarity=0.153  Sum_probs=113.4

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh----hh-----hhh
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----RS-----LIP   76 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~-----~~~   76 (170)
                      +.+..++++||.|++|||||+|.+........+.+.++.......  .+....+++++||||.-+.    +.     .+.
T Consensus       165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH--~dykYlrwQViDTPGILD~plEdrN~IEmqsIT  242 (620)
T KOG1490|consen  165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGH--LDYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT  242 (620)
T ss_pred             CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhh--hhhheeeeeecCCccccCcchhhhhHHHHHHHH
Confidence            567789999999999999999999887776444444443333333  2334568899999993321    11     112


Q ss_pred             hhhcCCcEEEEEEeCCCh--hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHH---HHHHHHhcCCeEEEe
Q 030856           77 SYIRDSSVAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEE---GEAKSRELNVMFIET  151 (170)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~  151 (170)
                      ...+--.+++|+.|++..  .|.......+..+...+ .+.|+++|+||+|+.....++.+.   .+.....-+++++++
T Consensus       243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t  321 (620)
T KOG1490|consen  243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT  321 (620)
T ss_pred             HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence            223335689999999864  46677777777787776 589999999999998766665433   333344455899999


Q ss_pred             ecCCCCChHHHHHHHHhh
Q 030856          152 SAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       152 S~~~~~~v~~~~~~l~~~  169 (170)
                      |+.+.+|+-++....++.
T Consensus       322 S~~~eegVm~Vrt~ACe~  339 (620)
T KOG1490|consen  322 SCVQEEGVMDVRTTACEA  339 (620)
T ss_pred             cccchhceeeHHHHHHHH
Confidence            999999998877766553

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.64  E-value=3e-14  Score=99.80  Aligned_cols=123  Identities=13%  Similarity=0.165  Sum_probs=73.7

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCC-CccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh-------hh
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------IP   76 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~   76 (170)
                      ++.+.++|+++|.+|+||||++|++++..... +...+.+...........  +.++.++||||..+....       ..
T Consensus        34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik  111 (313)
T TIGR00991        34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIK  111 (313)
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHH
Confidence            34678999999999999999999999876531 111222222222222233  467999999996543221       12


Q ss_pred             hhh--cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCC--CCeEEEEEeCCCCCCC
Q 030856           77 SYI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS--DVIIVLVGNKTDLVEK  129 (170)
Q Consensus        77 ~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~vvv~nK~D~~~~  129 (170)
                      .++  .+.|+++||..+.....-+.....+..+...++.  -.+++++.|+.|....
T Consensus       112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p  168 (313)
T TIGR00991       112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP  168 (313)
T ss_pred             HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence            122  2689999996654321111223344444444432  2468999999997643

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.63  E-value=5e-15  Score=107.00  Aligned_cols=158  Identities=17%  Similarity=0.208  Sum_probs=113.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCC--------------CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFD--------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL   74 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   74 (170)
                      -.+|+|+.....|||||++.|+.+.-.              +......+++...+...+....+++.|.||||+.+|...
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE   84 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE   84 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence            468999999999999999999976331              122333455666666666666789999999999999999


Q ss_pred             hhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC-HHHHHHHH-------HhcCC
Q 030856           75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-IEEGEAKS-------RELNV  146 (170)
Q Consensus        75 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~-~~~~~~~~-------~~~~~  146 (170)
                      .+..+.-.|++++++|+.+... ...+-.   +.+....+.+.++|+||+|...++... .++...+.       .+.++
T Consensus        85 VERvl~MVDgvlLlVDA~EGpM-PQTrFV---lkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF  160 (603)
T COG1217          85 VERVLSMVDGVLLLVDASEGPM-PQTRFV---LKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF  160 (603)
T ss_pred             hhhhhhhcceEEEEEEcccCCC-Cchhhh---HHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence            9999999999999999987422 222221   222333567778888999998765421 12222222       24567


Q ss_pred             eEEEeecCCCC----------ChHHHHHHHHhhC
Q 030856          147 MFIETSAKAGF----------NIKGCSPTIRRLI  170 (170)
Q Consensus       147 ~~~~~S~~~~~----------~v~~~~~~l~~~i  170 (170)
                      |++..|++.|.          ++.-+|+.|.+.+
T Consensus       161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv  194 (603)
T COG1217         161 PIVYASARNGTASLDPEDEADDMAPLFETILDHV  194 (603)
T ss_pred             cEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence            99999998775          5788899888764

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.63  E-value=3.7e-14  Score=97.70  Aligned_cols=121  Identities=16%  Similarity=0.189  Sum_probs=73.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCC-ccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh----------h
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----------L   74 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~   74 (170)
                      ...+++|+++|.+|+|||||+|++++...... .....+..........++  .++.+|||||..+...          .
T Consensus        28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~  105 (249)
T cd01853          28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSS  105 (249)
T ss_pred             ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHH
Confidence            45679999999999999999999999765321 122222233333333333  5789999999654310          1


Q ss_pred             hhhhhc--CCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCC--CeEEEEEeCCCCCCC
Q 030856           75 IPSYIR--DSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSD--VIIVLVGNKTDLVEK  129 (170)
Q Consensus        75 ~~~~~~--~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~--~~~vvv~nK~D~~~~  129 (170)
                      ...++.  ..|+++++..++... ... ....++.+...++.+  .++++|.||+|...+
T Consensus       106 I~~~l~~~~idvIL~V~rlD~~r~~~~-d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p  164 (249)
T cd01853         106 IKRYLKKKTPDVVLYVDRLDMYRRDYL-DLPLLRAITDSFGPSIWRNAIVVLTHAASSPP  164 (249)
T ss_pred             HHHHHhccCCCEEEEEEcCCCCCCCHH-HHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence            222333  578888887665421 222 133444454444322  468999999998643

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.63  E-value=1.5e-14  Score=106.87  Aligned_cols=158  Identities=16%  Similarity=0.181  Sum_probs=118.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ..+-+.+.++|+.++|||.+++.++++.+..++..+....+........+....+.+.|.+-. ....+.... ..||++
T Consensus       422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~  499 (625)
T KOG1707|consen  422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA  499 (625)
T ss_pred             cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence            345689999999999999999999999888766666666666666666676667778887653 222222222 679999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCCChHHHHH
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKGCSP  164 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~  164 (170)
                      +++||.+++.+|+.+...++.-...  ...|+++|++|+|+.+..+...-...++++++++ +.+..|++.... .++|.
T Consensus       500 ~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~  576 (625)
T KOG1707|consen  500 CLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFI  576 (625)
T ss_pred             EEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHH
Confidence            9999999999999987765544333  6899999999999987655443344889999998 667778775333 78888


Q ss_pred             HHHh
Q 030856          165 TIRR  168 (170)
Q Consensus       165 ~l~~  168 (170)
                      .|+.
T Consensus       577 kL~~  580 (625)
T KOG1707|consen  577 KLAT  580 (625)
T ss_pred             HHHH
Confidence            7764

>TIGR00101 ureG urease accessory protein UreG

Probab=99.62  E-value=1.6e-14  Score=96.52  Aligned_cols=101  Identities=19%  Similarity=0.153  Sum_probs=63.9

Q ss_pred             EEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHH
Q 030856           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG  137 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~  137 (170)
                      ....++++.|..-...... .  -+|.+|.|+|+.+.++...  .....+      ...-++++||+|+.+......+..
T Consensus        92 ~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~  160 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM  160 (199)
T ss_pred             CCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence            3566778888432122211 1  2688999999987554321  111111      122378889999975323334444


Q ss_pred             HHHHHh--cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          138 EAKSRE--LNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       138 ~~~~~~--~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      .+..+.  .+.+++++|+++|+|+++++++|.++
T Consensus       161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~  194 (199)
T TIGR00101       161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHY  194 (199)
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            444544  45699999999999999999999875

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.62  E-value=2.3e-14  Score=103.77  Aligned_cols=86  Identities=19%  Similarity=0.162  Sum_probs=58.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCe---------------EEEEEEEecCChhh-
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQER-   70 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~-   70 (170)
                      ...++|+++|.||+|||||+|+|.+........|..+.+.....+.+++.               ..++.++|+||... 
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            45689999999999999999999887665443455444444444433322               23589999999432 


Q ss_pred             ------hhhhhhhhhcCCcEEEEEEeCC
Q 030856           71 ------FRSLIPSYIRDSSVAVVVYDVA   92 (170)
Q Consensus        71 ------~~~~~~~~~~~~d~~i~v~d~~   92 (170)
                            ........++++|++++|+|+.
T Consensus        99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence                  1112223367899999999973

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.61  E-value=4.4e-15  Score=102.29  Aligned_cols=96  Identities=17%  Similarity=0.219  Sum_probs=79.2

Q ss_pred             hhhhhhhhhhhcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCe
Q 030856           69 ERFRSLIPSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM  147 (170)
Q Consensus        69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~  147 (170)
                      +++..+.+.++.++|.+++|||+++|. +++.+..|+..+..   .++|+++|+||+|+.+.+....+.++.+. ..+.+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCe
Confidence            556777888999999999999999887 89999999876643   57999999999999765555444555444 57889


Q ss_pred             EEEeecCCCCChHHHHHHHHh
Q 030856          148 FIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus       148 ~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ++++||++|.|++++|+.+.+
T Consensus       100 v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcC
Confidence            999999999999999998865

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.60  E-value=8.2e-15  Score=114.63  Aligned_cols=118  Identities=19%  Similarity=0.123  Sum_probs=79.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCC---------------CC-C--ccceeeeeeeEEEEEeCCeEEEEEEEecCCh
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF---------------DN-T--YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~---------------~~-~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   68 (170)
                      .+..||+++|+.++|||||+++|+....               .. +  +..|............++..+.+.+|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            3457999999999999999999975310               00 0  1112222222222335566789999999999


Q ss_pred             hhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856           69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~  128 (170)
                      .++.......+..+|++++|+|+.+.-..+....| ....   ..+.|.++++||+|...
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQAL---KENVKPVLFINKVDRLI  152 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHH---HcCCCEEEEEEChhccc
Confidence            98888888889999999999998864222222222 2221   24578889999999853

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.60  E-value=1.3e-14  Score=98.18  Aligned_cols=155  Identities=11%  Similarity=0.086  Sum_probs=88.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCcc--ceeeeeeeEEEEEeCCeEEEEEEEecCChhhh-------hhhhh----
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQ--ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIP----   76 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~----   76 (170)
                      ++|+++|.+|+||||++|.+++........  ...+..........++  ..+.++||||..+.       .....    
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            589999999999999999999987653322  2222233333334555  56889999993321       11111    


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCC--CeEEEEEeCCCCCCCcccC-------HHHHHHHHHhcCCe
Q 030856           77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD--VIIVLVGNKTDLVEKRQVS-------IEEGEAKSRELNVM  147 (170)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~vvv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~  147 (170)
                      ....+.+++++|+..... + +.....+..+...++++  ..++||.|..|......+.       ....+.+.+..+-.
T Consensus        79 ~~~~g~ha~llVi~~~r~-t-~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRF-T-EEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETTB--S-HHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecCcc-h-HHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            224578999999998732 1 12233334444444432  3478888999876554421       12345566666667


Q ss_pred             EEEeecC------CCCChHHHHHHHHh
Q 030856          148 FIETSAK------AGFNIKGCSPTIRR  168 (170)
Q Consensus       148 ~~~~S~~------~~~~v~~~~~~l~~  168 (170)
                      |...+.+      ....+.+|++.+-+
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~  183 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEE  183 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHH
Confidence            7766655      33456677666543

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PRK13768 GTPase; Provisional

Probab=99.60  E-value=1e-14  Score=100.96  Aligned_cols=112  Identities=22%  Similarity=0.193  Sum_probs=69.9

Q ss_pred             EEEEEecCChhhh---hhhhhhhhc---C--CcEEEEEEeCCChhhHHh-HHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 030856           59 RLQLWDTAGQERF---RSLIPSYIR---D--SSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEK  129 (170)
Q Consensus        59 ~~~i~D~~g~~~~---~~~~~~~~~---~--~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~  129 (170)
                      .+.+||+||..+.   +..+..+++   .  ++++++++|+........ ...++..+......+.|+++|+||+|....
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~  177 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE  177 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence            5899999997663   333333333   2  899999999975432222 222222222211247999999999998654


Q ss_pred             cccCH--HHHH------------------------HHHHhcC--CeEEEeecCCCCChHHHHHHHHhhC
Q 030856          130 RQVSI--EEGE------------------------AKSRELN--VMFIETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       130 ~~~~~--~~~~------------------------~~~~~~~--~~~~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                      .+...  ....                        +..+..+  .+++++|++++.|++++.++|.+.+
T Consensus       178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence            32210  0000                        1122334  4889999999999999999998764

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.59  E-value=3.6e-14  Score=88.01  Aligned_cols=114  Identities=36%  Similarity=0.405  Sum_probs=81.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCcc-ceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQ-ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      +|++++|..|+|||+|+.++....+...+. ++.+                           +......+.+.++.++++
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            489999999999999999997766643332 3322                           223334456778999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 030856           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~  160 (170)
                      |+..++++++.+  |...+....+.++|.++++||.|+.+......+...        .++++|++++.|+.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence            999999888766  777666655567899999999998544444433333        34567888888864

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.59  E-value=6.9e-14  Score=98.02  Aligned_cols=150  Identities=21%  Similarity=0.297  Sum_probs=108.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCC---------------------------------CCccceeeeeeeEEEEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD---------------------------------NTYQATIGIDFLSKTMY   52 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~   52 (170)
                      ....+|++-||...-||||||-+|++....                                 .+....+++++....+.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            456799999999999999999999964220                                 01112233343333333


Q ss_pred             eCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc
Q 030856           53 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV  132 (170)
Q Consensus        53 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~  132 (170)
                        -.+.+|.+-||||++.|...+..-...||+.|+++|+-  ............+....+ -..+++.+||+|+.+..+.
T Consensus        83 --T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR--~Gvl~QTrRHs~I~sLLG-IrhvvvAVNKmDLvdy~e~  157 (431)
T COG2895          83 --TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR--KGVLEQTRRHSFIASLLG-IRHVVVAVNKMDLVDYSEE  157 (431)
T ss_pred             --cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc--hhhHHHhHHHHHHHHHhC-CcEEEEEEeeecccccCHH
Confidence              23457899999999999998888889999999999974  455555555566665553 3458888999999876554


Q ss_pred             C----HHHHHHHHHhcCC---eEEEeecCCCCChH
Q 030856          133 S----IEEGEAKSRELNV---MFIETSAKAGFNIK  160 (170)
Q Consensus       133 ~----~~~~~~~~~~~~~---~~~~~S~~~~~~v~  160 (170)
                      .    ..+...|+.+.++   .++++||..|+|+-
T Consensus       158 ~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         158 VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            3    3445667777776   89999999999875

>cd00066 G-alpha G protein alpha subunit

Probab=99.58  E-value=8e-14  Score=99.50  Aligned_cols=113  Identities=19%  Similarity=0.240  Sum_probs=83.1

Q ss_pred             EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCCh----------hhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCC
Q 030856           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEVRTERG-SDVIIVLVGNKTD  125 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D  125 (170)
                      ...+.+||++|+...+..|..++.++++++||+|+++.          ..+......+..+..... .+.|+++++||.|
T Consensus       160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D  239 (317)
T cd00066         160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD  239 (317)
T ss_pred             ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence            46789999999999999999999999999999999863          345555555555544332 6799999999999


Q ss_pred             CCCC----------------cccCHHHHHHHHHh----------cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          126 LVEK----------------RQVSIEEGEAKSRE----------LNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       126 ~~~~----------------~~~~~~~~~~~~~~----------~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      +..+                ..-+.+.+..+...          ..+....++|.+..++..+|+.+.+.
T Consensus       240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~  309 (317)
T cd00066         240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDI  309 (317)
T ss_pred             HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHH
Confidence            6421                12234444444432          23566778999999999999888764

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.57  E-value=9.3e-14  Score=109.02  Aligned_cols=117  Identities=19%  Similarity=0.135  Sum_probs=77.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCC--C--------------CccceeeeeeeEE--EEEeCCeEEEEEEEecCCh
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD--N--------------TYQATIGIDFLSK--TMYLEDRTVRLQLWDTAGQ   68 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~--~--------------~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~g~   68 (170)
                      .+-.+|+++|+.++|||||+++|+.....  .              +..+..+.+....  .+..++....+.++||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            44578999999999999999999853211  0              0001111111111  1223445678999999999


Q ss_pred             hhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856           69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~  127 (170)
                      .++.......+..+|++++|+|+...-..+....| .....   .+.|.++++||+|+.
T Consensus        98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~-~~~~~---~~~~~iv~iNK~D~~  152 (731)
T PRK07560         98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVL-RQALR---ERVKPVLFINKVDRL  152 (731)
T ss_pred             cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHH-HHHHH---cCCCeEEEEECchhh
Confidence            99988888889999999999998865332222222 22222   246778999999975

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.56  E-value=3.9e-13  Score=96.47  Aligned_cols=83  Identities=17%  Similarity=0.151  Sum_probs=54.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCe---------------EEEEEEEecCChhhh---
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERF---   71 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~---   71 (170)
                      ++|+++|.|++|||||+|++++........|..+.+.......+.+.               ..++.+.|+||...-   
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            78999999999999999999987754333344433333333333221               135899999994321   


Q ss_pred             -hh---hhhhhhcCCcEEEEEEeCC
Q 030856           72 -RS---LIPSYIRDSSVAVVVYDVA   92 (170)
Q Consensus        72 -~~---~~~~~~~~~d~~i~v~d~~   92 (170)
                       ..   .....++++|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence             11   1222367899999999984

>smart00275 G_alpha G protein alpha subunit

Probab=99.56  E-value=1.2e-13  Score=99.35  Aligned_cols=113  Identities=15%  Similarity=0.202  Sum_probs=81.4

Q ss_pred             EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCCh----------hhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCC
Q 030856           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEVRTER-GSDVIIVLVGNKTD  125 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D  125 (170)
                      ...+.+||.+|+...+..|..++.+++++|||+|+++-          ..+......+..+.... -.+.|+++++||.|
T Consensus       183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D  262 (342)
T smart00275      183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID  262 (342)
T ss_pred             CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence            35689999999999999999999999999999999962          34555555555554432 26799999999999


Q ss_pred             CCCC--------------cc-cCHHHHHHHHHh-----------cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          126 LVEK--------------RQ-VSIEEGEAKSRE-----------LNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       126 ~~~~--------------~~-~~~~~~~~~~~~-----------~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      +..+              .. .+.+.+..+...           ..+..+.++|.+..++..+|+.+.+.
T Consensus       263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~  332 (342)
T smart00275      263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDI  332 (342)
T ss_pred             hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHH
Confidence            7521              00 133444443321           22466778899999999999887654

Subunit of G proteins that contains the guanine nucleotide binding site

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.54  E-value=1.6e-13  Score=98.59  Aligned_cols=154  Identities=14%  Similarity=0.130  Sum_probs=77.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCc-cce--eeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhh-----h
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTY-QAT--IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY-----I   79 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----~   79 (170)
                      .+++|+|+|.+|+|||||+|+|.+-...+.. .++  ...+........+.. -.+.+||.||..........|     +
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~-pnv~lWDlPG~gt~~f~~~~Yl~~~~~  112 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF-PNVTLWDLPGIGTPNFPPEEYLKEVKF  112 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC-CCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence            5799999999999999999999874332211 111  111111222212211 148999999965433333333     5


Q ss_pred             cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC-------CCcccCH----HHHHHHHHh----c
Q 030856           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV-------EKRQVSI----EEGEAKSRE----L  144 (170)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~-------~~~~~~~----~~~~~~~~~----~  144 (170)
                      ...|.+|++.+    +.|.....++..-.+.  .+.|+++|-||.|..       .++..+.    ++.++.+..    .
T Consensus       113 ~~yD~fiii~s----~rf~~ndv~La~~i~~--~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~  186 (376)
T PF05049_consen  113 YRYDFFIIISS----ERFTENDVQLAKEIQR--MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA  186 (376)
T ss_dssp             GG-SEEEEEES----SS--HHHHHHHHHHHH--TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred             cccCEEEEEeC----CCCchhhHHHHHHHHH--cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence            57898888777    3455554444433333  378999999999952       1122222    233333332    2


Q ss_pred             CC---eEEEeecCCCC--ChHHHHHHHHh
Q 030856          145 NV---MFIETSAKAGF--NIKGCSPTIRR  168 (170)
Q Consensus       145 ~~---~~~~~S~~~~~--~v~~~~~~l~~  168 (170)
                      |+   ++|.+|+.+-.  +...+.+.|.+
T Consensus       187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~  215 (376)
T PF05049_consen  187 GVSEPQVFLVSSFDLSKYDFPKLEETLEK  215 (376)
T ss_dssp             T-SS--EEEB-TTTTTSTTHHHHHHHHHH
T ss_pred             CCCcCceEEEeCCCcccCChHHHHHHHHH
Confidence            43   78999988655  35566666654

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.54  E-value=7.6e-14  Score=110.81  Aligned_cols=118  Identities=18%  Similarity=0.204  Sum_probs=80.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCC----------------CCccceeeeeeeEEEEEe--------------CC
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD----------------NTYQATIGIDFLSKTMYL--------------ED   55 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~--------------~~   55 (170)
                      ..+-.+|+++|+.++|||||+++|+.....                .+.....+++.......+              ++
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            445679999999999999999999864321                001111122211112222              22


Q ss_pred             eEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~  127 (170)
                      ..+.+.++||||+.+|.......+..+|+.|+|+|+.+.-.......| ..+   ...++|+++++||+|+.
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~---~~~~~p~i~~iNK~D~~  163 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA---LGERIRPVLTVNKMDRC  163 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHH---HHCCCCEEEEEECCccc
Confidence            357889999999999999888889999999999999865433333333 222   23478999999999986

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.54  E-value=9.7e-14  Score=93.61  Aligned_cols=151  Identities=19%  Similarity=0.210  Sum_probs=83.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCC--------Cc----c----ceeeeeeeEEEEE----------------eCC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN--------TY----Q----ATIGIDFLSKTMY----------------LED   55 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~--------~~----~----~~~~~~~~~~~~~----------------~~~   55 (170)
                      ....|+++|+.|+|||||++++.......        ..    .    ...+.+.....-.                ...
T Consensus        21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~  100 (207)
T TIGR00073        21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL  100 (207)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence            46789999999999999999988541100        00    0    0000000000000                000


Q ss_pred             eEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHH
Q 030856           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE  135 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~  135 (170)
                      ....+.++|+.|.-.. .  ..+....+..+.++|..+.+...  ... ...     ...|.++++||+|+.+.......
T Consensus       101 ~~~d~IiIEt~G~l~~-~--~~~~~~~~~~i~Vvd~~~~d~~~--~~~-~~~-----~~~a~iiv~NK~Dl~~~~~~~~~  169 (207)
T TIGR00073       101 DDIDLLFIENVGNLVC-P--ADFDLGEHMRVVLLSVTEGDDKP--LKY-PGM-----FKEADLIVINKADLAEAVGFDVE  169 (207)
T ss_pred             CCCCEEEEecCCCcCC-C--cccccccCeEEEEEecCcccchh--hhh-HhH-----HhhCCEEEEEHHHccccchhhHH
Confidence            1234566777762100 0  01112345556677766432211  111 111     23567999999999754333334


Q ss_pred             HHHHHHHhcC--CeEEEeecCCCCChHHHHHHHHhh
Q 030856          136 EGEAKSRELN--VMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       136 ~~~~~~~~~~--~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      +..+..+..+  .+++++||+++.|++++++++.++
T Consensus       170 ~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       170 KMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4444444443  799999999999999999999875

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.54  E-value=2.1e-14  Score=98.37  Aligned_cols=111  Identities=23%  Similarity=0.135  Sum_probs=60.1

Q ss_pred             EEEEEecCChhhhhhhhhhhh--------cCCcEEEEEEeCCChhh-HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 030856           59 RLQLWDTAGQERFRSLIPSYI--------RDSSVAVVVYDVASRQS-FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK  129 (170)
Q Consensus        59 ~~~i~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~  129 (170)
                      .+.++|||||.+....+...-        ...-++++++|+..... ...+..++..+.....-+.|.+.|+||+|+..+
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            689999999998766555543        34568889999763222 222233333333333347999999999999752


Q ss_pred             cc------------c-------CH---HHHHHHHHhcC-C-eEEEeecCCCCChHHHHHHHHhh
Q 030856          130 RQ------------V-------SI---EEGEAKSRELN-V-MFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       130 ~~------------~-------~~---~~~~~~~~~~~-~-~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      ..            .       ..   ++..++...++ . .++++|+.+++++++++..+-+.
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a  235 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA  235 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence            10            0       00   11111122223 3 79999999999999999988664

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.53  E-value=1.9e-13  Score=97.32  Aligned_cols=102  Identities=16%  Similarity=0.080  Sum_probs=64.4

Q ss_pred             EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc--CH
Q 030856           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SI  134 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~--~~  134 (170)
                      ++.+.|+||+|...-..   .....+|.++++.+...++.++....   .+.     ...-++|+||+|+......  ..
T Consensus       148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k~---gi~-----E~aDIiVVNKaDl~~~~~a~~~~  216 (332)
T PRK09435        148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIKK---GIM-----ELADLIVINKADGDNKTAARRAA  216 (332)
T ss_pred             CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHHh---hhh-----hhhheEEeehhcccchhHHHHHH
Confidence            46789999999663222   24667999999977544444444332   111     1223788899998653321  11


Q ss_pred             HHHHHHHHh-------cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          135 EEGEAKSRE-------LNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       135 ~~~~~~~~~-------~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      .+.+.....       +..+++.+||.++.|++++++.|.+.
T Consensus       217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~  258 (332)
T PRK09435        217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDH  258 (332)
T ss_pred             HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            122222221       22589999999999999999999864

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=4.8e-13  Score=99.07  Aligned_cols=156  Identities=24%  Similarity=0.293  Sum_probs=104.4

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCC-----------------------------CCCccceeeeeeeEEEEEeCC
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKF-----------------------------DNTYQATIGIDFLSKTMYLED   55 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~   55 (170)
                      .+...++++++|...+|||||+.++++.--                             ....++..++........++.
T Consensus       173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes  252 (603)
T KOG0458|consen  173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES  252 (603)
T ss_pred             CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence            345679999999999999999999885211                             011122233333333334445


Q ss_pred             eEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCCh---hhHHh--HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc
Q 030856           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR---QSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~~~~~--~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~  130 (170)
                      ....+++.|+||+..|......-...+|+.++|+|++..   .+|+.  ..+.+..+.+..+ -..++|++||+|+.+..
T Consensus       253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-i~qlivaiNKmD~V~Ws  331 (603)
T KOG0458|consen  253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-ISQLIVAINKMDLVSWS  331 (603)
T ss_pred             CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-cceEEEEeecccccCcc
Confidence            567899999999888888887778899999999999853   12321  1333344455543 45578889999998765


Q ss_pred             ccCHHHHHH----HH-HhcC-----CeEEEeecCCCCChHH
Q 030856          131 QVSIEEGEA----KS-RELN-----VMFIETSAKAGFNIKG  161 (170)
Q Consensus       131 ~~~~~~~~~----~~-~~~~-----~~~~~~S~~~~~~v~~  161 (170)
                      +-..++++.    |. +..|     +.|++||+.+|+|+-.
T Consensus       332 q~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k  372 (603)
T KOG0458|consen  332 QDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK  372 (603)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence            544444333    33 2233     4899999999998753

>PTZ00416 elongation factor 2; Provisional

Probab=99.52  E-value=1.5e-13  Score=109.03  Aligned_cols=118  Identities=18%  Similarity=0.215  Sum_probs=79.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCC----------------CCccceeeeeeeEEEEEeC--------CeEEEEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD----------------NTYQATIGIDFLSKTMYLE--------DRTVRLQ   61 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~   61 (170)
                      ..+..+|+++|+.++|||||+++|+.....                .+.....+++.......+.        +....+.
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            345569999999999999999999863210                0011111222111122222        2256799


Q ss_pred             EEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856           62 LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        62 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~  127 (170)
                      ++||||+.++.......+..+|++|+|+|+.+.-..+...- +..+..   .++|+++++||+|+.
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~-~~~~~~---~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETV-LRQALQ---ERIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHH-HHHHHH---cCCCEEEEEEChhhh
Confidence            99999999998888888999999999999987533332222 233322   468999999999986

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=1.7e-13  Score=95.09  Aligned_cols=162  Identities=19%  Similarity=0.153  Sum_probs=107.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCC---CCccceeeeeeeE------------------EEEEeC------CeEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLS------------------KTMYLE------DRTVR   59 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~---~~~~~~~~~~~~~------------------~~~~~~------~~~~~   59 (170)
                      ...++|.++|.-..|||||..+|.+--..   ++..+..++....                  ..-.++      .-..+
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            56899999999999999999999863211   1111111110000                  000011      12347


Q ss_pred             EEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc--cCHHHH
Q 030856           60 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEG  137 (170)
Q Consensus        60 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~--~~~~~~  137 (170)
                      +.|.|.||++-.....-+-..-.|+.++|++++.+..-...++.+-.+.-.  .-..++++-||.|+....+  .+.++.
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi--gik~iiIvQNKIDlV~~E~AlE~y~qI  165 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII--GIKNIIIVQNKIDLVSRERALENYEQI  165 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh--ccceEEEEecccceecHHHHHHHHHHH
Confidence            899999999876665555555679999999999764433444433333221  2356899999999975322  345667


Q ss_pred             HHHHHhc---CCeEEEeecCCCCChHHHHHHHHhhC
Q 030856          138 EAKSREL---NVMFIETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       138 ~~~~~~~---~~~~~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                      ++|.+.-   +.+++++||..+.|+|.++++|.+.|
T Consensus       166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I  201 (415)
T COG5257         166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI  201 (415)
T ss_pred             HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence            7776643   67999999999999999999998865

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.50  E-value=1.2e-12  Score=91.76  Aligned_cols=160  Identities=19%  Similarity=0.172  Sum_probs=99.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCC-------CCCCccceeeeeeeEEEEE-------eCCeEEEEEEEecCChhhh
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDK-------FDNTYQATIGIDFLSKTMY-------LEDRTVRLQLWDTAGQERF   71 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~-------~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~D~~g~~~~   71 (170)
                      ...+++++++|.-.||||||.+++..-.       .+.+..+..+.+..-..+.       ..+++.++.++|+||+...
T Consensus         4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL   83 (522)
T KOG0461|consen    4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL   83 (522)
T ss_pred             CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence            3456999999999999999999988532       2233333333333322222       3466788999999998755


Q ss_pred             hhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC--cccC-HHHHHHHHHhc----
Q 030856           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK--RQVS-IEEGEAKSREL----  144 (170)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~--~~~~-~~~~~~~~~~~----  144 (170)
                      -..+.....-.|..++|+|+.....-+...-  ..+....  ....++|+||.|...+  |.-. .+.+++..+..    
T Consensus        84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEc--Liig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~  159 (522)
T KOG0461|consen   84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAEC--LIIGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG  159 (522)
T ss_pred             HHHHHhhhheeeeeeEEEehhcccccccchh--hhhhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence            5544444555689999999985432222211  2233333  2346777799987543  2211 22223332221    


Q ss_pred             ---CCeEEEeecCCC----CChHHHHHHHHhh
Q 030856          145 ---NVMFIETSAKAG----FNIKGCSPTIRRL  169 (170)
Q Consensus       145 ---~~~~~~~S~~~~----~~v~~~~~~l~~~  169 (170)
                         +.|++++|+..|    +.+.++.+.|..+
T Consensus       160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~  191 (522)
T KOG0461|consen  160 FDGNSPIVEVSAADGYFKEEMIQELKEALESR  191 (522)
T ss_pred             cCCCCceeEEecCCCccchhHHHHHHHHHHHh
Confidence               359999999999    7888888877654

>cd01882 BMS1 Bms1

Probab=99.50  E-value=1e-12  Score=89.64  Aligned_cols=140  Identities=12%  Similarity=0.116  Sum_probs=81.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .....|+++|.+|+|||||++.+.............+.    ..+ ......++.++|+||..  .. .....+.+|+++
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVl  108 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADLVL  108 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH--HH-HHHHHHhcCEEE
Confidence            45678999999999999999999865322111111111    111 11234578899999854  22 233467899999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeE-EEEEeCCCCCCCcccC---HHHHHH-HHHh--cCCeEEEeecCCCCC
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVII-VLVGNKTDLVEKRQVS---IEEGEA-KSRE--LNVMFIETSAKAGFN  158 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-vvv~nK~D~~~~~~~~---~~~~~~-~~~~--~~~~~~~~S~~~~~~  158 (170)
                      +++|.+....... ...+..+..   .+.|. ++|+||+|+.+.....   ..++++ +...  .+.+++.+||+++-.
T Consensus       109 lviDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~  183 (225)
T cd01882         109 LLIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR  183 (225)
T ss_pred             EEEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence            9999875432222 222222222   24664 4599999986432211   112222 2211  235999999988743

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>cd01900 YchF YchF subfamily

Probab=99.49  E-value=1.6e-12  Score=90.53  Aligned_cols=81  Identities=17%  Similarity=0.173  Sum_probs=53.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCe---------------EEEEEEEecCChhhh----h
Q 030856           12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERF----R   72 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~----~   72 (170)
                      |+++|.|++|||||+|++++........|..+.+.......+.+.               ..++.++|+||...-    .
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            589999999999999999998765443444444444433333332               235899999994321    1


Q ss_pred             hh---hhhhhcCCcEEEEEEeCC
Q 030856           73 SL---IPSYIRDSSVAVVVYDVA   92 (170)
Q Consensus        73 ~~---~~~~~~~~d~~i~v~d~~   92 (170)
                      .+   ....++++|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            11   222356899999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.48  E-value=3.7e-14  Score=92.00  Aligned_cols=53  Identities=28%  Similarity=0.217  Sum_probs=46.0

Q ss_pred             EEEEEeCCCCCCCcccCHHHHHHHHHhcC--CeEEEeecCCCCChHHHHHHHHhh
Q 030856          117 IVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       117 ~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      -++|+||.|+...-..+.+...+-+++.+  .+++++|+++|+|++++++|+...
T Consensus       145 DllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~  199 (202)
T COG0378         145 DLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQ  199 (202)
T ss_pred             eEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence            48889999998887777788888888765  699999999999999999998764

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.46  E-value=6.3e-12  Score=84.74  Aligned_cols=154  Identities=19%  Similarity=0.236  Sum_probs=104.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh-------hhhhhhhhc
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIR   80 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~   80 (170)
                      ..-+|+++|.|.+|||||+..+.............+.+..+..+.+++  ..+++.|.||.-+-       ........+
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavAr  138 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVAR  138 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEee
Confidence            356899999999999999999998766544344444566666666655  45889999994321       112333467


Q ss_pred             CCcEEEEEEeCCChhhHH-hHHHHHHHHHHhcC---C-------------------------------------------
Q 030856           81 DSSVAVVVYDVASRQSFL-NTSKWIDEVRTERG---S-------------------------------------------  113 (170)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~---~-------------------------------------------  113 (170)
                      .+|.+++|.|++..+.-. -+...+..+.-...   |                                           
T Consensus       139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl  218 (364)
T KOG1486|consen  139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVL  218 (364)
T ss_pred             cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEE
Confidence            899999999998754433 23344444321111   1                                           


Q ss_pred             -------------------CCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhhC
Q 030856          114 -------------------DVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       114 -------------------~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                                         =++++.|.||+|     +++.++..++++..+-.++  |+.-..|++.+++.+.+.+
T Consensus       219 ~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID-----~vs~eevdrlAr~PnsvVi--SC~m~lnld~lle~iWe~l  287 (364)
T KOG1486|consen  219 FREDCTVDDFIDVIEGNRVYIKCLYVYNKID-----QVSIEEVDRLARQPNSVVI--SCNMKLNLDRLLERIWEEL  287 (364)
T ss_pred             EecCCChHHHHHHHhccceEEEEEEEeeccc-----eecHHHHHHHhcCCCcEEE--EeccccCHHHHHHHHHHHh
Confidence                               136777888888     4678888888888776555  5566688999999887653

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.45  E-value=3.9e-12  Score=89.17  Aligned_cols=138  Identities=14%  Similarity=0.215  Sum_probs=75.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCC----------ccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh-----
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT----------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----   73 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----   73 (170)
                      +++|+++|.+|+|||||+|.|++......          ..++...........-++..+.+.++||||..+...     
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            58999999999999999999998654322          112233333334445567788999999999321100     


Q ss_pred             -hh--------hhh-------------hcCCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCc
Q 030856           74 -LI--------PSY-------------IRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (170)
Q Consensus        74 -~~--------~~~-------------~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~  130 (170)
                       ..        ..+             =.+.|+++|.++.+.. ++..+ ...+..+    ...++++-|+.|+|.....
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~L----s~~vNvIPvIaKaD~lt~~  158 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRL----SKRVNVIPVIAKADTLTPE  158 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHH----TTTSEEEEEESTGGGS-HH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHh----cccccEEeEEecccccCHH
Confidence             00        001             1146899999998742 12111 1222333    3568899999999986543


Q ss_pred             ccC--HHHHHHHHHhcCCeEEEe
Q 030856          131 QVS--IEEGEAKSRELNVMFIET  151 (170)
Q Consensus       131 ~~~--~~~~~~~~~~~~~~~~~~  151 (170)
                      +..  ........+.+++.++..
T Consensus       159 el~~~k~~i~~~l~~~~I~~f~f  181 (281)
T PF00735_consen  159 ELQAFKQRIREDLEENNIKIFDF  181 (281)
T ss_dssp             HHHHHHHHHHHHHHHTT--S---
T ss_pred             HHHHHHHHHHHHHHHcCceeecc
Confidence            321  233444455667755543

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=1.5e-12  Score=98.93  Aligned_cols=157  Identities=20%  Similarity=0.201  Sum_probs=103.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceee----eeeeEEEE--------EeCC----eEEEEEEEecCChh
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIG----IDFLSKTM--------YLED----RTVRLQLWDTAGQE   69 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~----~~~~~~~~--------~~~~----~~~~~~i~D~~g~~   69 (170)
                      ..+..-|+|+|...+|||-|+..+.+.+.......+.+    .++.+...        .-.+    ..--+.++||||++
T Consensus       472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE  551 (1064)
T KOG1144|consen  472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE  551 (1064)
T ss_pred             hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence            44567789999999999999999998766533333322    22222110        0000    11137899999999


Q ss_pred             hhhhhhhhhhcCCcEEEEEEeCCCh---hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc---------------
Q 030856           70 RFRSLIPSYIRDSSVAVVVYDVASR---QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ---------------  131 (170)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~---------------  131 (170)
                      .|..+.......||+.|+|+|+.+.   .+++.+    ..++.   .+.|++|.+||+|..=...               
T Consensus       552 sFtnlRsrgsslC~~aIlvvdImhGlepqtiESi----~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~  624 (1064)
T KOG1144|consen  552 SFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQK  624 (1064)
T ss_pred             hhhhhhhccccccceEEEEeehhccCCcchhHHH----HHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhh
Confidence            9999999999999999999999853   333332    22332   5799999999999741100               


Q ss_pred             --cCH-------HHHHHHHHh-c-------------CCeEEEeecCCCCChHHHHHHHHhh
Q 030856          132 --VSI-------EEGEAKSRE-L-------------NVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       132 --~~~-------~~~~~~~~~-~-------------~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                        +..       .-..+|+.+ +             -+.++++||.+|+||.+|+-+|++.
T Consensus       625 k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~l  685 (1064)
T KOG1144|consen  625 KDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQL  685 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHH
Confidence              000       001111110 0             1367999999999999999998863

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.42  E-value=1.6e-11  Score=88.78  Aligned_cols=155  Identities=16%  Similarity=0.189  Sum_probs=93.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC----CCC-------------CCcc----ceeeeee---eEEEEE-eCCeEEEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYD----KFD-------------NTYQ----ATIGIDF---LSKTMY-LEDRTVRLQ   61 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~----~~~-------------~~~~----~~~~~~~---~~~~~~-~~~~~~~~~   61 (170)
                      .-.+.|+++|+.++|||||+|++.++    ...             .+..    -|+...+   ....+. .++...++.
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            34689999999999999999999987    332             1111    1122222   112222 234567899


Q ss_pred             EEecCChhhhh-------hh----------------------hhhhhc-CCcEEEEEE-eCC--C--hhh-HHhHHHHHH
Q 030856           62 LWDTAGQERFR-------SL----------------------IPSYIR-DSSVAVVVY-DVA--S--RQS-FLNTSKWID  105 (170)
Q Consensus        62 i~D~~g~~~~~-------~~----------------------~~~~~~-~~d~~i~v~-d~~--~--~~~-~~~~~~~~~  105 (170)
                      ++||+|...-.       ..                      .+..+. ++|+.|+|. |.+  +  ++. .+.-..++.
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~  174 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE  174 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence            99999932110       00                      222344 889888888 653  1  122 233355555


Q ss_pred             HHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCC--CChHHHHHHH
Q 030856          106 EVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG--FNIKGCSPTI  166 (170)
Q Consensus       106 ~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~--~~v~~~~~~l  166 (170)
                      .+..   .++|+++++||.|-...  ...+...++...++++++.+|+.+-  +.+..+++.+
T Consensus       175 eLk~---~~kPfiivlN~~dp~~~--et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~v  232 (492)
T TIGR02836       175 ELKE---LNKPFIILLNSTHPYHP--ETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEV  232 (492)
T ss_pred             HHHh---cCCCEEEEEECcCCCCc--hhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHH
Confidence            5554   47999999999994221  2344556677788998888887643  3455555443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.42  E-value=4.7e-12  Score=89.94  Aligned_cols=102  Identities=19%  Similarity=0.051  Sum_probs=62.8

Q ss_pred             EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCH--
Q 030856           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI--  134 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~--  134 (170)
                      ++.+.|+||+|....   .......+|.++++-....   -+.+......+     .+.|.++|+||+|+........  
T Consensus       126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~---~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~  194 (300)
T TIGR00750       126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGT---GDDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR  194 (300)
T ss_pred             CCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCc---cHHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence            467899999995422   2234667888888854332   23333332222     2467799999999865432111  


Q ss_pred             H----HHHHHHHh---cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          135 E----EGEAKSRE---LNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       135 ~----~~~~~~~~---~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      .    ....+...   .+.+++++||+++.|+++++++|.+.
T Consensus       195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~  236 (300)
T TIGR00750       195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEH  236 (300)
T ss_pred             HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence            0    00111111   22469999999999999999999764

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.40  E-value=2.1e-11  Score=92.70  Aligned_cols=119  Identities=12%  Similarity=0.143  Sum_probs=74.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCC-CccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh-------h---hhh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------S---LIP   76 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~---~~~   76 (170)
                      ..++|+++|.+|+||||++|.+++..... ......+..........++  ..+.++||||..+..       .   ...
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik  194 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVK  194 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHH
Confidence            45799999999999999999999976432 2111122222222223333  568999999955421       1   122


Q ss_pred             hhhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCC--CeEEEEEeCCCCCC
Q 030856           77 SYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD--VIIVLVGNKTDLVE  128 (170)
Q Consensus        77 ~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~vvv~nK~D~~~  128 (170)
                      .++.  ..|++|+|..+........-..++..+...++++  ..++||.|+.|...
T Consensus       195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence            2333  5899999988764322222345666666666644  34788889999865

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.39  E-value=3.6e-12  Score=83.21  Aligned_cols=63  Identities=19%  Similarity=0.238  Sum_probs=41.8

Q ss_pred             EEEEEecCChhh----hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCC
Q 030856           59 RLQLWDTAGQER----FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT  124 (170)
Q Consensus        59 ~~~i~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~  124 (170)
                      .+.|+||||...    .......+++.+|++|+|.++++..+-.....+.+....   ....+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~---~~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP---DKSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT---TCSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC---CCCeEEEEEcCC
Confidence            489999999542    346788889999999999999875443333333333322   234488888984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=1.1e-11  Score=95.89  Aligned_cols=120  Identities=22%  Similarity=0.204  Sum_probs=88.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCC----C------------CccceeeeeeeEEEEEeCCe-EEEEEEEecCCh
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD----N------------TYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQ   68 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~----~------------~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~   68 (170)
                      ..+-.+|+|+|+-.+|||||..+++...-.    .            ......+++......+.... .+++.++||||+
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            567789999999999999999998852110    0            01122344444444444444 489999999999


Q ss_pred             hhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 030856           69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK  129 (170)
Q Consensus        69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~  129 (170)
                      -+|.......++-+|+.++|+|+...-..+...-|.+.    ...++|.++++||+|....
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa----~~~~vp~i~fiNKmDR~~a  143 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQA----DKYGVPRILFVNKMDRLGA  143 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHH----hhcCCCeEEEEECcccccc
Confidence            99999999999999999999999876444554555333    3357999999999998643

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.37  E-value=8.7e-12  Score=86.07  Aligned_cols=102  Identities=18%  Similarity=0.072  Sum_probs=66.5

Q ss_pred             EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCH--
Q 030856           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI--  134 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~--  134 (170)
                      ++.+.|++|.|-...   .......+|.++++.-..-.+..+.++.-+-++.        -++|+||.|.......-.  
T Consensus       143 G~DvIIVETVGvGQs---ev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia--------Di~vINKaD~~~A~~a~r~l  211 (323)
T COG1703         143 GYDVIIVETVGVGQS---EVDIANMADTFLVVMIPGAGDDLQGIKAGIMEIA--------DIIVINKADRKGAEKAAREL  211 (323)
T ss_pred             CCCEEEEEecCCCcc---hhHHhhhcceEEEEecCCCCcHHHHHHhhhhhhh--------heeeEeccChhhHHHHHHHH
Confidence            467899999985422   2333456899999888776666777665444433        378889999644321111  


Q ss_pred             HHHHHHH----HhcC--CeEEEeecCCCCChHHHHHHHHhh
Q 030856          135 EEGEAKS----RELN--VMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       135 ~~~~~~~----~~~~--~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      ..+..+.    +..+  .+++.+||.+|+|++++++.+.+.
T Consensus       212 ~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h  252 (323)
T COG1703         212 RSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDH  252 (323)
T ss_pred             HHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHH
Confidence            1111122    1123  389999999999999999998763

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.36  E-value=1.2e-12  Score=89.00  Aligned_cols=151  Identities=17%  Similarity=0.085  Sum_probs=85.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCC-----------CCCccce---------------eeeeeeEEEEEeC------
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-----------DNTYQAT---------------IGIDFLSKTMYLE------   54 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~-----------~~~~~~~---------------~~~~~~~~~~~~~------   54 (170)
                      .+...|+|.|+||+|||||+++|.....           +++...+               .....+.......      
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl  106 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL  106 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence            3568999999999999999998874211           0000000               0011111111111      


Q ss_pred             ------------CeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEe
Q 030856           55 ------------DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGN  122 (170)
Q Consensus        55 ------------~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~n  122 (170)
                                  ..++.+.|++|.|-..-   ......-+|.+++|....-.+..+.++.-+-++        .-++|+|
T Consensus       107 s~~t~~~v~ll~aaG~D~IiiETVGvGQs---E~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVN  175 (266)
T PF03308_consen  107 SRATRDAVRLLDAAGFDVIIIETVGVGQS---EVDIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVN  175 (266)
T ss_dssp             HHHHHHHHHHHHHTT-SEEEEEEESSSTH---HHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE
T ss_pred             cHhHHHHHHHHHHcCCCEEEEeCCCCCcc---HHHHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEe
Confidence                        12356889999884321   233356799999999988776666665544444        2378889


Q ss_pred             CCCCCCCcccCH--HHHHHHHHh----cCCeEEEeecCCCCChHHHHHHHHh
Q 030856          123 KTDLVEKRQVSI--EEGEAKSRE----LNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus       123 K~D~~~~~~~~~--~~~~~~~~~----~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      |.|+......-.  ..+..+...    +..+++.+||.++.|++++++.|.+
T Consensus       176 KaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~  227 (266)
T PF03308_consen  176 KADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDE  227 (266)
T ss_dssp             --SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            999644332211  112222221    1249999999999999999999875

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.35  E-value=2.7e-11  Score=86.17  Aligned_cols=112  Identities=17%  Similarity=0.237  Sum_probs=77.9

Q ss_pred             EEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhh----------HHhHHHHHHHHHHhcC-CCCeEEEEEeCCCC
Q 030856           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQS----------FLNTSKWIDEVRTERG-SDVIIVLVGNKTDL  126 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~----------~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~  126 (170)
                      ..+.++|.+|+...+..|.+++.+++++|||.++++-+.          +..-...+..+..... .+.++++++||.|+
T Consensus       195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL  274 (354)
T KOG0082|consen  195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL  274 (354)
T ss_pred             CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence            678999999999999999999999999999999985322          1122333333433322 67899999999998


Q ss_pred             CCC--------------cc-cCHHHHHHHHHh----------cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          127 VEK--------------RQ-VSIEEGEAKSRE----------LNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       127 ~~~--------------~~-~~~~~~~~~~~~----------~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      .++              .. -..+++..+...          ..+.+..+.|.+..+|+.+|.++.+.
T Consensus       275 FeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~  342 (354)
T KOG0082|consen  275 FEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDT  342 (354)
T ss_pred             HHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHH
Confidence            642              11 233444444332          13455667888889999999887654

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.35  E-value=1e-12  Score=91.55  Aligned_cols=55  Identities=22%  Similarity=0.219  Sum_probs=40.5

Q ss_pred             CeEEEEEeCCCCCCCcccCHHHHHHHHHhc--CCeEEEeecCCCCChHHHHHHHHhh
Q 030856          115 VIIVLVGNKTDLVEKRQVSIEEGEAKSREL--NVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       115 ~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      .+-++|+||+|+........+...+..+..  +.+++++|+++|+|++++.+||.+.
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            456888899999653333344444444443  4699999999999999999999763

>smart00053 DYNc Dynamin, GTPase

Probab=99.35  E-value=5.1e-11  Score=81.49  Aligned_cols=68  Identities=21%  Similarity=0.259  Sum_probs=42.4

Q ss_pred             EEEEEEecCChhh-------------hhhhhhhhhcC-CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeC
Q 030856           58 VRLQLWDTAGQER-------------FRSLIPSYIRD-SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNK  123 (170)
Q Consensus        58 ~~~~i~D~~g~~~-------------~~~~~~~~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK  123 (170)
                      ..+.++|+||...             ...+...|+++ .+++++|+|+...-.-.........+.   ..+.++++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence            3689999999531             23356667774 569999998764211111112222222   246899999999


Q ss_pred             CCCCC
Q 030856          124 TDLVE  128 (170)
Q Consensus       124 ~D~~~  128 (170)
                      .|..+
T Consensus       202 ~D~~~  206 (240)
T smart00053      202 LDLMD  206 (240)
T ss_pred             CCCCC
Confidence            99864

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=2.3e-11  Score=87.75  Aligned_cols=139  Identities=20%  Similarity=0.233  Sum_probs=95.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhc--CC----------CCC--------CccceeeeeeeEEEEEeCCeEEEEEEEec
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMY--DK----------FDN--------TYQATIGIDFLSKTMYLEDRTVRLQLWDT   65 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~--~~----------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~   65 (170)
                      -.++.+.+|+-.|.+|||||-.+|+-  +.          ...        +.....++.+.....+.+.....+.+.||
T Consensus         9 v~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDT   88 (528)
T COG4108           9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDT   88 (528)
T ss_pred             HhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCC
Confidence            35678999999999999999999772  10          000        01123455556666666666788999999


Q ss_pred             CChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC
Q 030856           66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN  145 (170)
Q Consensus        66 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~  145 (170)
                      ||++++..-...-+-.+|..++|+|+...-.-+. .+.+...+.   .++|++-++||.|......  .+...+.....+
T Consensus        89 PGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcrl---R~iPI~TFiNKlDR~~rdP--~ELLdEiE~~L~  162 (528)
T COG4108          89 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCRL---RDIPIFTFINKLDREGRDP--LELLDEIEEELG  162 (528)
T ss_pred             CCccccchhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHhh---cCCceEEEeeccccccCCh--HHHHHHHHHHhC
Confidence            9999999988888999999999999985422222 222222222   5899999999999854333  355555555555


Q ss_pred             CeEEE
Q 030856          146 VMFIE  150 (170)
Q Consensus       146 ~~~~~  150 (170)
                      +..++
T Consensus       163 i~~~P  167 (528)
T COG4108         163 IQCAP  167 (528)
T ss_pred             cceec
Confidence            54443

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.33  E-value=3.7e-12  Score=88.61  Aligned_cols=151  Identities=14%  Similarity=0.106  Sum_probs=93.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh---------hhhhhh
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIP   76 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~   76 (170)
                      ..+..-|+++|..|+|||||+++|.+........-..+.+........++.. .+.+.||.|.-.         |+. .-
T Consensus       175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~A-TL  252 (410)
T KOG0410|consen  175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQA-TL  252 (410)
T ss_pred             cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHH-HH
Confidence            3455679999999999999999999655443322222233333333333333 577889999332         222 22


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe----EEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEee
Q 030856           77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI----IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETS  152 (170)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  152 (170)
                      .....+|.++-|.|+++|+.-+.....+..+....-+..|    ++=|-||.|..+..        .-...++  .+.+|
T Consensus       253 eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~--------~e~E~n~--~v~is  322 (410)
T KOG0410|consen  253 EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE--------VEEEKNL--DVGIS  322 (410)
T ss_pred             HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc--------CccccCC--ccccc
Confidence            2356899999999999986555444444444433212233    45566777753321        1122333  57789


Q ss_pred             cCCCCChHHHHHHHHh
Q 030856          153 AKAGFNIKGCSPTIRR  168 (170)
Q Consensus       153 ~~~~~~v~~~~~~l~~  168 (170)
                      |.+|+|++++.+.+-.
T Consensus       323 altgdgl~el~~a~~~  338 (410)
T KOG0410|consen  323 ALTGDGLEELLKAEET  338 (410)
T ss_pred             cccCccHHHHHHHHHH
Confidence            9999999999988754

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=4e-11  Score=86.65  Aligned_cols=153  Identities=20%  Similarity=0.129  Sum_probs=102.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC---CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      .|+..|.--.|||||++.+.+..-.   +.-....+.+........++  ..+.|+|.||++++-...-..+...|..++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            5788899999999999999986443   33344445555444443333  378999999999988888888889999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHH---hcCCeEEEeecCCCCChHHHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR---ELNVMFIETSAKAGFNIKGCSP  164 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~S~~~~~~v~~~~~  164 (170)
                      |++.++.-..+. .+. ..+....+ ....++|+||+|+.+...+. +..++...   ..+.+++.+|+.+|+|++++.+
T Consensus        80 vV~~deGl~~qt-gEh-L~iLdllg-i~~giivltk~D~~d~~r~e-~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~  155 (447)
T COG3276          80 VVAADEGLMAQT-GEH-LLILDLLG-IKNGIIVLTKADRVDEARIE-QKIKQILADLSLANAKIFKTSAKTGRGIEELKN  155 (447)
T ss_pred             EEeCccCcchhh-HHH-HHHHHhcC-CCceEEEEeccccccHHHHH-HHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence            999964322221 111 22223222 23358888999987543221 11222222   2345889999999999999999


Q ss_pred             HHHhh
Q 030856          165 TIRRL  169 (170)
Q Consensus       165 ~l~~~  169 (170)
                      .|.+.
T Consensus       156 ~l~~L  160 (447)
T COG3276         156 ELIDL  160 (447)
T ss_pred             HHHHh
Confidence            99864

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.32  E-value=1.1e-10  Score=79.73  Aligned_cols=109  Identities=18%  Similarity=0.171  Sum_probs=63.3

Q ss_pred             EEEEEEecCChhhhhh------hhhhhhc--CCcEEEEEEeCC---ChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 030856           58 VRLQLWDTAGQERFRS------LIPSYIR--DSSVAVVVYDVA---SRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL  126 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~------~~~~~~~--~~d~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~  126 (170)
                      ....++||||+-+...      .+...+.  ..-++++++|..   +|.+|-.-.-  -...-....++|.+++.||+|+
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMl--YAcSilyktklp~ivvfNK~Dv  193 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNML--YACSILYKTKLPFIVVFNKTDV  193 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHH--HHHHHHHhccCCeEEEEecccc
Confidence            4688999999654211      1111122  345777888864   3444433222  2222223357999999999998


Q ss_pred             CCCcc----c-CHHHHHHHHH---------------------hcCCeEEEeecCCCCChHHHHHHHHh
Q 030856          127 VEKRQ----V-SIEEGEAKSR---------------------ELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus       127 ~~~~~----~-~~~~~~~~~~---------------------~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      .+..-    . +.+..++-..                     -.++..+-||+.+|.|.+++|..+-+
T Consensus       194 ~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~  261 (366)
T KOG1532|consen  194 SDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDE  261 (366)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHH
Confidence            64310    0 0111111111                     01567899999999999999998765

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=1.2e-10  Score=83.01  Aligned_cols=84  Identities=17%  Similarity=0.193  Sum_probs=54.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEe------------C----CeEEEEEEEecCChh---
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL------------E----DRTVRLQLWDTAGQE---   69 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~----~~~~~~~i~D~~g~~---   69 (170)
                      .++++|+|.|++|||||+|+++.........|..+++.-.....+            .    -....+.++|.+|.-   
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            478999999999999999999987765333343333322221111            1    123578999999822   


Q ss_pred             ----hhhhhhhhhhcCCcEEEEEEeCC
Q 030856           70 ----RFRSLIPSYIRDSSVAVVVYDVA   92 (170)
Q Consensus        70 ----~~~~~~~~~~~~~d~~i~v~d~~   92 (170)
                          .....--.-++.+|+++-|+++.
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence                12222333367899999999987

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.31  E-value=7.7e-12  Score=83.17  Aligned_cols=147  Identities=24%  Similarity=0.334  Sum_probs=89.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh-----hhhhhhcC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----LIPSYIRD   81 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~   81 (170)
                      .+-||+++|.+|+|||++=-.++..... +...++.++++.-.....-| ...+.+||.+|++.+..     .....+++
T Consensus         3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~n   81 (295)
T KOG3886|consen    3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRN   81 (295)
T ss_pred             ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhhee
Confidence            3568999999999999986655543321 22223333333322221211 25689999999885432     34456889


Q ss_pred             CcEEEEEEeCCChhhHHhH---HHHHHHHHHhcCCCCeEEEEEeCCCCCCCc--ccCH----HHHHHHHHhcCCeEEEee
Q 030856           82 SSVAVVVYDVASRQSFLNT---SKWIDEVRTERGSDVIIVLVGNKTDLVEKR--QVSI----EEGEAKSRELNVMFIETS  152 (170)
Q Consensus        82 ~d~~i~v~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~--~~~~----~~~~~~~~~~~~~~~~~S  152 (170)
                      .++++++||++..+--.++   +..++.+.++. |...+.+..+|+|+....  +...    +..+.+.+..++.++++|
T Consensus        82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts  160 (295)
T KOG3886|consen   82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS  160 (295)
T ss_pred             heeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence            9999999999876443333   44444454443 677888889999987543  2222    223333333456778877


Q ss_pred             cCCC
Q 030856          153 AKAG  156 (170)
Q Consensus       153 ~~~~  156 (170)
                      ..+.
T Consensus       161 iwDe  164 (295)
T KOG3886|consen  161 IWDE  164 (295)
T ss_pred             hhhH
Confidence            6654

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=3e-11  Score=91.17  Aligned_cols=118  Identities=19%  Similarity=0.216  Sum_probs=84.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccc-----------------eeeeeeeEEEEE---eCCeEEEEEEEec
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-----------------TIGIDFLSKTMY---LEDRTVRLQLWDT   65 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~-----------------~~~~~~~~~~~~---~~~~~~~~~i~D~   65 (170)
                      +....+|+++|+-++|||+|+.-|..+..+.-..+                 ..++.....+..   .+++.+-+.+.||
T Consensus       125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT  204 (971)
T KOG0468|consen  125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT  204 (971)
T ss_pred             cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence            45568999999999999999999987655422111                 111222222222   2456788999999


Q ss_pred             CChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856           66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        66 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~  127 (170)
                      ||+..+.......+..+|++++++|+.+.-.+..-+.    ++.......|+++|+||.|+.
T Consensus       205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~----ikhaiq~~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERI----IKHAIQNRLPIVVVINKVDRL  262 (971)
T ss_pred             CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHH----HHHHHhccCcEEEEEehhHHH
Confidence            9999999999999999999999999987655544322    222223579999999999963

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.30  E-value=9.6e-11  Score=83.01  Aligned_cols=138  Identities=14%  Similarity=0.233  Sum_probs=88.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCC----------ccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh------
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT----------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF------   71 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------   71 (170)
                      ..++|+++|+.|+|||||+|.|++......          ..++.........+.-++....+.++||||..+.      
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~  101 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC  101 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence            468999999999999999999998744322          2344445555555666677889999999993321      


Q ss_pred             --------hhhhhhhhc--------------CCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856           72 --------RSLIPSYIR--------------DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        72 --------~~~~~~~~~--------------~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~  128 (170)
                              .+....|+.              +.++++|.+..+.. ++..+ ...+..+.    ..+.++-|+.|+|...
T Consensus       102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls----~~vNlIPVI~KaD~lT  176 (373)
T COG5019         102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLS----KRVNLIPVIAKADTLT  176 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHh----cccCeeeeeeccccCC
Confidence                    111111111              46899999987642 23332 22223332    4577888889999875


Q ss_pred             Cccc--CHHHHHHHHHhcCCeEEE
Q 030856          129 KRQV--SIEEGEAKSRELNVMFIE  150 (170)
Q Consensus       129 ~~~~--~~~~~~~~~~~~~~~~~~  150 (170)
                      ..+.  -.+...+....+++++|.
T Consensus       177 ~~El~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         177 DDELAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             HHHHHHHHHHHHHHHHHhCCceeC
Confidence            4433  234455556667777663

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=7.6e-11  Score=79.15  Aligned_cols=159  Identities=16%  Similarity=0.168  Sum_probs=99.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh---hhhhhcCCcEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL---IPSYIRDSSVA   85 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---~~~~~~~~d~~   85 (170)
                      +.+|+++|...+||||+-+..+++-.|.++...... .......+.+.-+.+.+||.||+..+...   ....++++.++
T Consensus        27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflEST-ski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL  105 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLEST-SKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL  105 (347)
T ss_pred             CceEEEEeecccCcchhhheeeeccCCCceeEeecc-CcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence            356999999999999998887777655443221111 11111122234467999999998765442   45568899999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhc--CCCCeEEEEEeCCCCCCC-------cccCHHHHHHHHH----hcCCeEEEee
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTER--GSDVIIVLVGNKTDLVEK-------RQVSIEEGEAKSR----ELNVMFIETS  152 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~vvv~nK~D~~~~-------~~~~~~~~~~~~~----~~~~~~~~~S  152 (170)
                      +||+|+.+ +-++.+......+.+..  .+++.+-+++.|.|-..+       +.+.......++.    ...+.|+.+|
T Consensus       106 ifvIDaQd-dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS  184 (347)
T KOG3887|consen  106 IFVIDAQD-DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS  184 (347)
T ss_pred             EEEEechH-HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence            99999875 33444454444444433  378889999999995422       2222222222222    2234677777


Q ss_pred             cCCCCChHHHHHHHHhhC
Q 030856          153 AKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       153 ~~~~~~v~~~~~~l~~~i  170 (170)
                      ..+. ++-|.|..+++.+
T Consensus       185 IyDH-SIfEAFSkvVQkL  201 (347)
T KOG3887|consen  185 IYDH-SIFEAFSKVVQKL  201 (347)
T ss_pred             ecch-HHHHHHHHHHHHH
Confidence            6654 7888888887653

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.25  E-value=2.2e-11  Score=89.96  Aligned_cols=157  Identities=20%  Similarity=0.350  Sum_probs=118.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ..+++|++|+|..++|||+|+.+++.+.+.....+.-+  .+.+.+..++....+.+.|.+|..     ...|...+|++
T Consensus        27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdav   99 (749)
T KOG0705|consen   27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAV   99 (749)
T ss_pred             ccchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCc-----hhhhhhhccce
Confidence            45689999999999999999999998888655444333  334445567777788888988833     45667789999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCC--CCcccCHHHHHHHHH-hcCCeEEEeecCCCCChHH
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLV--EKRQVSIEEGEAKSR-ELNVMFIETSAKAGFNIKG  161 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~--~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~v~~  161 (170)
                      ||+|...+..+|+.+......+..+.. ..+|+++++++--..  ..+.+...+++.++. ...+.+|++.+.+|.+++.
T Consensus       100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~r  179 (749)
T KOG0705|consen  100 VFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVER  179 (749)
T ss_pred             EEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHH
Confidence            999999999999998887777654443 568888888765332  234444555555554 4567999999999999999


Q ss_pred             HHHHHHhh
Q 030856          162 CSPTIRRL  169 (170)
Q Consensus       162 ~~~~l~~~  169 (170)
                      .|+.+..+
T Consensus       180 vf~~~~~k  187 (749)
T KOG0705|consen  180 VFQEVAQK  187 (749)
T ss_pred             HHHHHHHH
Confidence            99988764

>cd01855 YqeH YqeH

Probab=99.24  E-value=9.3e-11  Score=78.15  Aligned_cols=92  Identities=26%  Similarity=0.326  Sum_probs=64.4

Q ss_pred             hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHH-----HhcC
Q 030856           71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELN  145 (170)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~  145 (170)
                      +..+...+++++|++++|+|++++..-     |...+... ..+.|+++|+||+|+..... ..+....+.     +..+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence            577888899999999999999875321     11122111 24689999999999865332 233333333     2333


Q ss_pred             C---eEEEeecCCCCChHHHHHHHHhh
Q 030856          146 V---MFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       146 ~---~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      .   .++++||++++|+++++++|.+.
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~  123 (190)
T cd01855          97 LKPKDVILISAKKGWGVEELINAIKKL  123 (190)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence            3   68999999999999999999864

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.24  E-value=2.5e-10  Score=76.61  Aligned_cols=145  Identities=13%  Similarity=0.186  Sum_probs=88.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCC---------CccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh-------
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN---------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------   71 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------   71 (170)
                      -.++|+++|.+|.|||||+|.++......         .+..|.........+.-++...++.++||||..++       
T Consensus        45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW  124 (336)
T KOG1547|consen   45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW  124 (336)
T ss_pred             CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence            36899999999999999999998654422         12233444444444555677789999999993321       


Q ss_pred             -------hhhhhhh------------hc--CCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCC-
Q 030856           72 -------RSLIPSY------------IR--DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE-  128 (170)
Q Consensus        72 -------~~~~~~~------------~~--~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~-  128 (170)
                             ......|            +.  +++.++|.+..+. .++.-+ .++++.+.    .-+.++-|+-|.|... 
T Consensus       125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt----~vvNvvPVIakaDtlTl  199 (336)
T KOG1547|consen  125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLT----EVVNVVPVIAKADTLTL  199 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHh----hhheeeeeEeecccccH
Confidence                   1111122            22  4578888887764 233333 22223332    3467888889999643 


Q ss_pred             -CcccCHHHHHHHHHhcCCeEEEeecCCCC
Q 030856          129 -KRQVSIEEGEAKSRELNVMFIETSAKAGF  157 (170)
Q Consensus       129 -~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  157 (170)
                       ++..-.+..++-...+++.+|+--+.+.+
T Consensus       200 eEr~~FkqrI~~el~~~~i~vYPq~~fded  229 (336)
T KOG1547|consen  200 EERSAFKQRIRKELEKHGIDVYPQDSFDED  229 (336)
T ss_pred             HHHHHHHHHHHHHHHhcCcccccccccccc
Confidence             33333455555566778877776655544

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=2.5e-10  Score=78.77  Aligned_cols=158  Identities=16%  Similarity=0.120  Sum_probs=99.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcC----------------CCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYD----------------KFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   69 (170)
                      ..+.+||..+|.-..|||||-.++..-                ..+.+....++++.  ....++-....+...|+||+.
T Consensus         9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITInt--ahveyet~~rhyahVDcPGHa   86 (394)
T COG0050           9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINT--AHVEYETANRHYAHVDCPGHA   86 (394)
T ss_pred             CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceecc--ceeEEecCCceEEeccCCChH
Confidence            457899999999999999998887631                11222223333333  333333333456778999999


Q ss_pred             hhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCcccC---HHHHHHHHHhcC
Q 030856           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVS---IEEGEAKSRELN  145 (170)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~~~~~~---~~~~~~~~~~~~  145 (170)
                      +|-.....-....|+.|+|+++++...-+. +..+...++   -++| +++++||+|+.+..+..   ..+.+++...++
T Consensus        87 DYvKNMItgAaqmDgAILVVsA~dGpmPqT-rEHiLlarq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~  162 (394)
T COG0050          87 DYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYG  162 (394)
T ss_pred             HHHHHHhhhHHhcCccEEEEEcCCCCCCcc-hhhhhhhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcC
Confidence            998877777788999999999987432222 222222222   2454 78889999998644332   345666777776


Q ss_pred             C-----eEEEeecCCCC--------ChHHHHHHHHhh
Q 030856          146 V-----MFIETSAKAGF--------NIKGCSPTIRRL  169 (170)
Q Consensus       146 ~-----~~~~~S~~~~~--------~v~~~~~~l~~~  169 (170)
                      +     |++.-|+..--        .+.+|++++..+
T Consensus       163 f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~y  199 (394)
T COG0050         163 FPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSY  199 (394)
T ss_pred             CCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhc
Confidence            5     66766655321        245666655443

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.23  E-value=4.9e-10  Score=79.95  Aligned_cols=141  Identities=15%  Similarity=0.270  Sum_probs=86.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCC---------ccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh--------
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT---------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF--------   71 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------   71 (170)
                      .++++++|..|.|||||+|.|+......+         ...+.........+.-++..+++++.||||..+.        
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~  100 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR  100 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence            48999999999999999999998744322         1223344444444555677889999999993321        


Q ss_pred             ------hhhhhhh-----------hc--CCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc
Q 030856           72 ------RSLIPSY-----------IR--DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        72 ------~~~~~~~-----------~~--~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~  131 (170)
                            .+....|           +.  +.++++|.+..+.. ++..+ ...+..+    ...++++-|+.|.|.....+
T Consensus       101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l----~~~vNiIPVI~KaD~lT~~E  175 (366)
T KOG2655|consen  101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKL----SKKVNLIPVIAKADTLTKDE  175 (366)
T ss_pred             hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHH----hccccccceeeccccCCHHH
Confidence                  1111112           22  57899999987642 22222 1222222    24688888899999865443


Q ss_pred             cC--HHHHHHHHHhcCCeEEEeecC
Q 030856          132 VS--IEEGEAKSRELNVMFIETSAK  154 (170)
Q Consensus       132 ~~--~~~~~~~~~~~~~~~~~~S~~  154 (170)
                      +.  .....+.+..+++++|....-
T Consensus       176 l~~~K~~I~~~i~~~nI~vf~fp~~  200 (366)
T KOG2655|consen  176 LNQFKKRIRQDIEEHNIKVFDFPTD  200 (366)
T ss_pred             HHHHHHHHHHHHHHcCcceecCCCC
Confidence            32  344455555666665554433

>cd01859 MJ1464 MJ1464

Probab=99.20  E-value=1.2e-10  Score=75.21  Aligned_cols=93  Identities=25%  Similarity=0.251  Sum_probs=63.4

Q ss_pred             hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEE
Q 030856           71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIE  150 (170)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  150 (170)
                      ++.+.++.+.++|++++|+|++++...... .+...+.   ..+.|+++|+||+|+.+....  .....+....+.+++.
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~   75 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL---ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVY   75 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH---hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEE
Confidence            345677788889999999999876432221 1211121   236899999999998532211  1111233445678999


Q ss_pred             eecCCCCChHHHHHHHHhh
Q 030856          151 TSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       151 ~S~~~~~~v~~~~~~l~~~  169 (170)
                      +||+++.|++++++.+.+.
T Consensus        76 iSa~~~~gi~~L~~~l~~~   94 (156)
T cd01859          76 VSAKERLGTKILRRTIKEL   94 (156)
T ss_pred             EEccccccHHHHHHHHHHH
Confidence            9999999999999998764

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK12289 GTPase RsgA; Reviewed

Probab=99.18  E-value=1.4e-10  Score=83.69  Aligned_cols=92  Identities=16%  Similarity=0.233  Sum_probs=67.1

Q ss_pred             hhhhhhhcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEe
Q 030856           73 SLIPSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIET  151 (170)
Q Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (170)
                      .+.+..+.++|.+++|+|+.++. ....+..|+....   ..++|+++|+||+|+....+.  +.........++.++.+
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~---~~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~i  155 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE---STGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFI  155 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH---HCCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEE
Confidence            44555688999999999998775 3445566665542   257999999999998643221  22223334668899999


Q ss_pred             ecCCCCChHHHHHHHHhh
Q 030856          152 SAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       152 S~~~~~~v~~~~~~l~~~  169 (170)
                      |+.++.|++++++.|...
T Consensus       156 SA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        156 SVETGIGLEALLEQLRNK  173 (352)
T ss_pred             EcCCCCCHHHHhhhhccc
Confidence            999999999999988653

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.11  E-value=6.2e-10  Score=78.65  Aligned_cols=88  Identities=15%  Similarity=0.151  Sum_probs=67.7

Q ss_pred             hhhhcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecC
Q 030856           76 PSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK  154 (170)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  154 (170)
                      +..+.++|.+++|+|+.++. ++..+..|+..+..   .++|+++|+||+|+.+..+  ...........+.+++.+|++
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~  147 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAK  147 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECC
Confidence            44578999999999999887 77888888776654   3689999999999865421  122233344567899999999


Q ss_pred             CCCChHHHHHHHHh
Q 030856          155 AGFNIKGCSPTIRR  168 (170)
Q Consensus       155 ~~~~v~~~~~~l~~  168 (170)
                      ++.|+++++.+|..
T Consensus       148 ~g~gi~~L~~~L~~  161 (287)
T cd01854         148 TGEGLDELREYLKG  161 (287)
T ss_pred             CCccHHHHHhhhcc
Confidence            99999999988764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=99.11  E-value=2e-10  Score=78.50  Aligned_cols=156  Identities=15%  Similarity=0.089  Sum_probs=92.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccc-eeeeeeeEEEEEeCCeEEEEEEEecCC----------hhhhhhh
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-TIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRSL   74 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~   74 (170)
                      ...+.++++.|..++|||+|+|-+...+....... ..+.......+.+   .-.+.+.|.||          ..++...
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~~a~y~~~~~~d~~~~  209 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV---GKSWYEVDLPGYGRAGYGFELPADWDKF  209 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec---cceEEEEecCCcccccCCccCcchHhHh
Confidence            45679999999999999999999998765433222 3332222222222   23678889999          2344556


Q ss_pred             hhhhhcCCc---EEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC------ccc-----CHHHHHHH
Q 030856           75 IPSYIRDSS---VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK------RQV-----SIEEGEAK  140 (170)
Q Consensus        75 ~~~~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~------~~~-----~~~~~~~~  140 (170)
                      ...|+.+-+   -+.+++|++-+  ++............  .++|+.+|.||+|....      +..     .....-+.
T Consensus       210 t~~Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge--~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~  285 (320)
T KOG2486|consen  210 TKSYLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE--NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG  285 (320)
T ss_pred             HHHHHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh--cCCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence            666665543   23444555432  22222111111221  47999999999997521      111     11222222


Q ss_pred             HHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856          141 SRELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus       141 ~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      +.....+++.+|+.++.|+++++-.+.+
T Consensus       286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  286 VFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             ceeccCCceeeecccccCceeeeeehhh
Confidence            2333458888999999999998876654

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=2.3e-09  Score=80.26  Aligned_cols=140  Identities=11%  Similarity=0.172  Sum_probs=85.2

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCc
Q 030856            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (170)
Q Consensus         4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   83 (170)
                      ....+++-++++||||+|||||++.|........    .. +.......+.++..++++.++|.  +..+++ ...+-+|
T Consensus        64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~t----i~-~i~GPiTvvsgK~RRiTflEcp~--Dl~~mi-DvaKIaD  135 (1077)
T COG5192          64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQT----ID-EIRGPITVVSGKTRRITFLECPS--DLHQMI-DVAKIAD  135 (1077)
T ss_pred             ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhh----hh-ccCCceEEeecceeEEEEEeChH--HHHHHH-hHHHhhh
Confidence            3456778899999999999999999886432111    11 11111122456778999999993  333333 3456799


Q ss_pred             EEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCe-EEEEEeCCCCCCCcccCHHHHHHHHHh------cCCeEEEeecCC
Q 030856           84 VAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVSIEEGEAKSRE------LNVMFIETSAKA  155 (170)
Q Consensus        84 ~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~-~vvv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~S~~~  155 (170)
                      .+++++|.+-  .|+.-. .++..+..+   +.| ++-|+|+.|+..........-+++-++      .|+.+|.+|...
T Consensus       136 LVlLlIdgnf--GfEMETmEFLnil~~H---GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~  210 (1077)
T COG5192         136 LVLLLIDGNF--GFEMETMEFLNILISH---GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE  210 (1077)
T ss_pred             eeEEEecccc--CceehHHHHHHHHhhc---CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence            9999999773  344433 333333333   455 667789999976443322222222222      267888888664


Q ss_pred             C
Q 030856          156 G  156 (170)
Q Consensus       156 ~  156 (170)
                      +
T Consensus       211 n  211 (1077)
T COG5192         211 N  211 (1077)
T ss_pred             c
Confidence            4

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.09  E-value=1.5e-09  Score=79.99  Aligned_cols=114  Identities=17%  Similarity=0.208  Sum_probs=78.7

Q ss_pred             EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCCh----------hhHHhHHHHHHHHHHh-cCCCCeEEEEEeCCC
Q 030856           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTD  125 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~-~~~~~~~vvv~nK~D  125 (170)
                      ...+.++|++|+...+..|..++.+++++|||+++++-          ..+.+....+..+... .-.+.|++|+.||.|
T Consensus       235 ~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D  314 (389)
T PF00503_consen  235 SRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKID  314 (389)
T ss_dssp             TEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HH
T ss_pred             ccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHH
Confidence            35789999999999999999999999999999998732          1233333333443332 225899999999999


Q ss_pred             CCCC-----------------c-ccCHHHHHHHHHh------------cCCeEEEeecCCCCChHHHHHHHHhhC
Q 030856          126 LVEK-----------------R-QVSIEEGEAKSRE------------LNVMFIETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       126 ~~~~-----------------~-~~~~~~~~~~~~~------------~~~~~~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                      +..+                 . .-+.+.+..+...            ..+.+..++|.+..++..+|+.+.+.|
T Consensus       315 ~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  315 LFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            7421                 0 1234555555432            223567899999999999999987653

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>PRK12288 GTPase RsgA; Reviewed

Probab=99.09  E-value=1.5e-09  Score=78.44  Aligned_cols=88  Identities=16%  Similarity=0.171  Sum_probs=66.8

Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc-CHHHHHHHHHhcCCeEEEeecCCCC
Q 030856           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSRELNVMFIETSAKAGF  157 (170)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~S~~~~~  157 (170)
                      ..++|.+++|++.....++..+..|+.....   .++|+++|+||+|+...... ............+.+++++||+++.
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            4579999999998877788899998765432   46899999999999653321 1122233345667899999999999


Q ss_pred             ChHHHHHHHHhh
Q 030856          158 NIKGCSPTIRRL  169 (170)
Q Consensus       158 ~v~~~~~~l~~~  169 (170)
                      |+++++++|...
T Consensus       195 GideL~~~L~~k  206 (347)
T PRK12288        195 GLEELEAALTGR  206 (347)
T ss_pred             CHHHHHHHHhhC
Confidence            999999998754

>PRK00098 GTPase RsgA; Reviewed

Probab=99.08  E-value=6.9e-10  Score=78.83  Aligned_cols=87  Identities=20%  Similarity=0.231  Sum_probs=64.7

Q ss_pred             hhcCCcEEEEEEeCCChhhHHh-HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCC
Q 030856           78 YIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG  156 (170)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  156 (170)
                      .+.++|.+++|+|+.+++.... +..|+..+..   .++|+++|+||+|+.+... .........+..+.+++++||+++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g  152 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG  152 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence            3589999999999988765444 4666655543   4789999999999863322 122334445567889999999999


Q ss_pred             CChHHHHHHHHh
Q 030856          157 FNIKGCSPTIRR  168 (170)
Q Consensus       157 ~~v~~~~~~l~~  168 (170)
                      .|++++++.+..
T Consensus       153 ~gi~~L~~~l~g  164 (298)
T PRK00098        153 EGLDELKPLLAG  164 (298)
T ss_pred             ccHHHHHhhccC
Confidence            999999988753

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=1.3e-09  Score=77.54  Aligned_cols=122  Identities=20%  Similarity=0.250  Sum_probs=78.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCcc-ceeeeeeeEEEEE------eCCe-----------------------
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ-ATIGIDFLSKTMY------LEDR-----------------------   56 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~-~~~~~~~~~~~~~------~~~~-----------------------   56 (170)
                      ..+.-|+++|+=..||||+++.|+.+.++.... |..+.+.....+.      ++|.                       
T Consensus        56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR  135 (532)
T KOG1954|consen   56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR  135 (532)
T ss_pred             ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence            456779999999999999999999998874322 2222222222211      1111                       


Q ss_pred             ----------EEEEEEEecCChh-----------hhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCC
Q 030856           57 ----------TVRLQLWDTAGQE-----------RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDV  115 (170)
Q Consensus        57 ----------~~~~~i~D~~g~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  115 (170)
                                --.+.|+||||.-           .+....+.+..++|.|+++||...-+--++....+..++.   ..-
T Consensus       136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG---~Ed  212 (532)
T KOG1954|consen  136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG---HED  212 (532)
T ss_pred             HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC---Ccc
Confidence                      0158999999922           2455677788999999999997654333344444444443   345


Q ss_pred             eEEEEEeCCCCCCCcc
Q 030856          116 IIVLVGNKTDLVEKRQ  131 (170)
Q Consensus       116 ~~vvv~nK~D~~~~~~  131 (170)
                      .+-||.||.|+.+.++
T Consensus       213 kiRVVLNKADqVdtqq  228 (532)
T KOG1954|consen  213 KIRVVLNKADQVDTQQ  228 (532)
T ss_pred             eeEEEeccccccCHHH
Confidence            5677779999765433

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=99.07  E-value=1.3e-09  Score=79.32  Aligned_cols=94  Identities=28%  Similarity=0.373  Sum_probs=68.9

Q ss_pred             hhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHH----HHHHh
Q 030856           68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE----AKSRE  143 (170)
Q Consensus        68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~----~~~~~  143 (170)
                      .+++..+...+.+.++++++|+|+.+..     ..|...+.... .+.|+++|+||+|+... ....+...    +.++.
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence            4577888888889999999999987643     22333444433 26789999999998653 33334443    34566


Q ss_pred             cCC---eEEEeecCCCCChHHHHHHHHh
Q 030856          144 LNV---MFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus       144 ~~~---~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      .++   .++.+||+++.|++++++.|.+
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~  150 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKK  150 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHH
Confidence            676   4899999999999999999865

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.03  E-value=1.6e-09  Score=73.59  Aligned_cols=87  Identities=20%  Similarity=0.264  Sum_probs=57.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh-------hhhhhhhhhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRD   81 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~   81 (170)
                      -+|.++|.|.+|||||+..+.+...+ ..+..+.- ...+....+  ...++++.|.||.-+       .........+.
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl-~~vpG~~~y--~gaKiqlldlpgiiegakdgkgrg~qviavart  136 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTL-TTVPGVIRY--KGAKIQLLDLPGIIEGAKDGKGRGKQVIAVART  136 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeE-EEecceEec--cccceeeecCcchhcccccCCCCccEEEEEeec
Confidence            48999999999999999999987665 33333322 222222222  345789999999332       11223334668


Q ss_pred             CcEEEEEEeCCChhhHHh
Q 030856           82 SSVAVVVYDVASRQSFLN   99 (170)
Q Consensus        82 ~d~~i~v~d~~~~~~~~~   99 (170)
                      |+.+++|.|+..|-+-..
T Consensus       137 cnli~~vld~~kp~~hk~  154 (358)
T KOG1487|consen  137 CNLIFIVLDVLKPLSHKK  154 (358)
T ss_pred             ccEEEEEeeccCcccHHH
Confidence            999999999987755443

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.01  E-value=1e-09  Score=69.69  Aligned_cols=53  Identities=23%  Similarity=0.317  Sum_probs=36.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCC-CccceeeeeeeEEEEEeCCeEEEEEEEecCCh
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   68 (170)
                      +++++|.+|+|||||+|++.+..... ...+..+.+  ......++   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKH--FQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccc--eEEEEeCC---CEEEEECCCc
Confidence            89999999999999999999876532 122222222  22333333   4799999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01858 NGP_1 NGP-1

Probab=98.98  E-value=2.3e-09  Score=69.33  Aligned_cols=55  Identities=25%  Similarity=0.266  Sum_probs=36.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   67 (170)
                      +.++|+++|.+|+|||||+|++.+.... ....+..+....  .+....   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQ--YITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEE--EEEcCC---CEEEEECcC
Confidence            5688999999999999999999986543 222233222221  222221   367999998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01858 NGP_1 NGP-1

Probab=98.98  E-value=3.2e-09  Score=68.65  Aligned_cols=89  Identities=18%  Similarity=0.159  Sum_probs=57.0

Q ss_pred             hhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCC
Q 030856           78 YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF  157 (170)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  157 (170)
                      .+..+|++++|.|+.++..-. .......+.. ...+.|+++|+||+|+.++... ......+...+....+++|++.+.
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~-~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~~~   81 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTR-CKHVEEYLKK-EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINNPF   81 (157)
T ss_pred             hhhhCCEEEEEEECCCCcccc-CHHHHHHHHh-ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccccc
Confidence            367899999999998863211 1222222222 2346899999999998643221 122233333333345889999999


Q ss_pred             ChHHHHHHHHhh
Q 030856          158 NIKGCSPTIRRL  169 (170)
Q Consensus       158 ~v~~~~~~l~~~  169 (170)
                      |++++++.+.+.
T Consensus        82 ~~~~L~~~l~~~   93 (157)
T cd01858          82 GKGSLIQLLRQF   93 (157)
T ss_pred             cHHHHHHHHHHH
Confidence            999999998653

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.96  E-value=3.2e-09  Score=75.88  Aligned_cols=158  Identities=17%  Similarity=0.176  Sum_probs=94.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccce--------------eeeeeeEEEEEeCC----------------
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQAT--------------IGIDFLSKTMYLED----------------   55 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~----------------   55 (170)
                      ...++.++..|.-..|||||.-.|..+..++....+              .+.+.....+-+++                
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~  193 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA  193 (527)
T ss_pred             CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence            456799999999999999999988866554221111              11111111111111                


Q ss_pred             -----eEEEEEEEecCChhhhhhhhh-h-hhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856           56 -----RTVRLQLWDTAGQERFRSLIP-S-YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        56 -----~~~~~~i~D~~g~~~~~~~~~-~-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~  128 (170)
                           ..--+.+.|+.|++.|..... . .-+..|..++++.+++.-+  ...+...-+..  .-+.|+++++||+|+..
T Consensus       194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tkEHLgi~~--a~~lPviVvvTK~D~~~  269 (527)
T COG5258         194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTKEHLGIAL--AMELPVIVVVTKIDMVP  269 (527)
T ss_pred             HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhhHhhhhhh--hhcCCEEEEEEecccCc
Confidence                 112478999999998755333 2 2346899999999886532  22222122222  24799999999999864


Q ss_pred             CcccC--HHHHHH----------------------HHH--hcCC-eEEEeecCCCCChHHHHHHHH
Q 030856          129 KRQVS--IEEGEA----------------------KSR--ELNV-MFIETSAKAGFNIKGCSPTIR  167 (170)
Q Consensus       129 ~~~~~--~~~~~~----------------------~~~--~~~~-~~~~~S~~~~~~v~~~~~~l~  167 (170)
                      .....  .++..+                      .+.  ..++ |++.+|+.+|+|++-+.+.+.
T Consensus       270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~  335 (527)
T COG5258         270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL  335 (527)
T ss_pred             HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence            32110  111111                      111  1223 999999999999887665544

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.96  E-value=2e-09  Score=70.40  Aligned_cols=55  Identities=18%  Similarity=0.265  Sum_probs=38.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   67 (170)
                      ..++++++|.||+|||||+|++.+.... ....|..+.......  .+   ..+.++||||
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~--~~---~~~~l~DtPG  171 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVH--LD---KKVKLLDSPG  171 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEE--eC---CCEEEEECcC
Confidence            3489999999999999999999986552 333344433333222  22   2578999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.95  E-value=3.2e-09  Score=74.62  Aligned_cols=86  Identities=20%  Similarity=0.172  Sum_probs=62.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCC---------------eEEEEEEEecCChhh-
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED---------------RTVRLQLWDTAGQER-   70 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~g~~~-   70 (170)
                      .++++++|||.|+||||||+|.+..........|..+++.....+.+..               ....++++|++|.-. 
T Consensus        18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG   97 (391)
T KOG1491|consen   18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG   97 (391)
T ss_pred             CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence            4678999999999999999999999887766667666666655554432               134689999998321 


Q ss_pred             ------hhhhhhhhhcCCcEEEEEEeCC
Q 030856           71 ------FRSLIPSYIRDSSVAVVVYDVA   92 (170)
Q Consensus        71 ------~~~~~~~~~~~~d~~i~v~d~~   92 (170)
                            ....--.-++++|+++-|+++.
T Consensus        98 As~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             cccCcCchHHHHHhhhhccceeEEEEec
Confidence                  2222333466899999988865

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.94  E-value=6.7e-09  Score=74.17  Aligned_cols=159  Identities=14%  Similarity=0.237  Sum_probs=95.6

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccc-----------------------eeeeeeeEEEEEeC------
Q 030856            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-----------------------TIGIDFLSKTMYLE------   54 (170)
Q Consensus         4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~------   54 (170)
                      .+.--.++++++|...+|||||+--|..+..++....                       ..+++.....+.+.      
T Consensus       162 ~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taE  241 (591)
T KOG1143|consen  162 SQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAE  241 (591)
T ss_pred             cccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHH
Confidence            3445579999999999999999998887655432111                       11222222222111      


Q ss_pred             ----CeEEEEEEEecCChhhhhhhhhhhhcC--CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856           55 ----DRTVRLQLWDTAGQERFRSLIPSYIRD--SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        55 ----~~~~~~~i~D~~g~~~~~~~~~~~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~  128 (170)
                          ...--++++|.+|+..|......-+.+  .|..++++++.....+.. ++.+- +...  .++|++++++|+|+..
T Consensus       242 Ei~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLg-l~~A--L~iPfFvlvtK~Dl~~  317 (591)
T KOG1143|consen  242 EIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLG-LIAA--LNIPFFVLVTKMDLVD  317 (591)
T ss_pred             HHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHH-HHHH--hCCCeEEEEEeecccc
Confidence                112358999999999887755544433  577788888765433222 22222 2222  4799999999999875


Q ss_pred             Ccc------------------------cCHHHHHHHHH----hcCCeEEEeecCCCCChHHHHHHH
Q 030856          129 KRQ------------------------VSIEEGEAKSR----ELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus       129 ~~~------------------------~~~~~~~~~~~----~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      ...                        .+.+++-.-+.    ..=.|++.+|+.+|+|++-+...|
T Consensus       318 ~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL  383 (591)
T KOG1143|consen  318 RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL  383 (591)
T ss_pred             chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence            311                        11222222222    222389999999999987655443

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=4.7e-08  Score=74.48  Aligned_cols=146  Identities=21%  Similarity=0.250  Sum_probs=85.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCC-Cccceeee-------------------------------------ee--
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGI-------------------------------------DF--   46 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~-~~~~~~~~-------------------------------------~~--   46 (170)
                      ....||+|.|..++||||++|+++.++.-+ ...+++.+                                     +.  
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            457899999999999999999998654421 11111000                                     00  


Q ss_pred             ---eEEEEEeCCeE-----EEEEEEecCChh---hhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCC
Q 030856           47 ---LSKTMYLEDRT-----VRLQLWDTAGQE---RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDV  115 (170)
Q Consensus        47 ---~~~~~~~~~~~-----~~~~i~D~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  115 (170)
                         .-..+.++...     -.+.+.|.||-+   +..+-...+...+|++|+|.++.+..+... +.++.....   .+.
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~---~Kp  262 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE---EKP  262 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc---cCC
Confidence               00001111111     146788999943   444556666778999999999876543333 444443333   245


Q ss_pred             eEEEEEeCCCCCCCcccCHHHHHHHHHhcC--------CeEEEeecCCC
Q 030856          116 IIVLVGNKTDLVEKRQVSIEEGEAKSRELN--------VMFIETSAKAG  156 (170)
Q Consensus       116 ~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~S~~~~  156 (170)
                      .++++.||+|.....+...++.....+...        =.++.||+++-
T Consensus       263 niFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e~  311 (749)
T KOG0448|consen  263 NIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKEV  311 (749)
T ss_pred             cEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccch
Confidence            577788999986544444444444433332        15677886643

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.92  E-value=7.6e-09  Score=79.42  Aligned_cols=121  Identities=22%  Similarity=0.186  Sum_probs=84.7

Q ss_pred             CCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCC--------------CCccceeeeeeeEEEEEeCCeEEEEEEEecCC
Q 030856            2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFD--------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (170)
Q Consensus         2 ~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   67 (170)
                      .+.....-.+++++..-..|||||.+.|.....-              .+...+.+++.....+..-.+.+.+.++|+||
T Consensus         2 ~~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspg   81 (887)
T KOG0467|consen    2 LQKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPG   81 (887)
T ss_pred             CCCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCC
Confidence            4566677889999999999999999998854221              11223334444444444445667899999999


Q ss_pred             hhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 030856           68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL  126 (170)
Q Consensus        68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~  126 (170)
                      +.+|.+.......-+|+.++++|+...-.-+..    ..+++....+..+++|+||+|.
T Consensus        82 hvdf~sevssas~l~d~alvlvdvvegv~~qt~----~vlrq~~~~~~~~~lvinkidr  136 (887)
T KOG0467|consen   82 HVDFSSEVSSASRLSDGALVLVDVVEGVCSQTY----AVLRQAWIEGLKPILVINKIDR  136 (887)
T ss_pred             ccchhhhhhhhhhhcCCcEEEEeeccccchhHH----HHHHHHHHccCceEEEEehhhh
Confidence            999999999999999999999998753221211    1122222245677888999994

>TIGR00092 GTP-binding protein YchF

Probab=98.91  E-value=8.7e-09  Score=74.41  Aligned_cols=83  Identities=14%  Similarity=0.079  Sum_probs=56.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC-CCCccceeeeeeeEEEEEeCCe---------------EEEEEEEecCChhh---
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQER---   70 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~---   70 (170)
                      ++++|+|.|++|||||++.++.... +....|..+.+.....+.+.+.               ...+.+.|.||...   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7999999999999999999998877 5433344433333333333331               23678999999432   


Q ss_pred             ----hhhhhhhhhcCCcEEEEEEeCC
Q 030856           71 ----FRSLIPSYIRDSSVAVVVYDVA   92 (170)
Q Consensus        71 ----~~~~~~~~~~~~d~~i~v~d~~   92 (170)
                          .....-..++++|+++.|+++.
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                1223334577899999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.89  E-value=4.3e-08  Score=66.55  Aligned_cols=157  Identities=15%  Similarity=0.149  Sum_probs=101.5

Q ss_pred             ceeEEEEcCCCC--CHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            9 KYKLVFLGDQSV--GKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         9 ~~~i~i~G~~~~--GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      +.-++++|..|+  ||.+|+.+|....+..+..+....++..+++........+.+.=.+--+++.-..........+++
T Consensus         4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~v   83 (418)
T KOG4273|consen    4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV   83 (418)
T ss_pred             CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence            456789999998  999999999998887666666666777776544333322322222221222222222233457899


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC-------------------------------------
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK-------------------------------------  129 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~-------------------------------------  129 (170)
                      ++||++...++..+..|+....-..  =-..+.++||.|....                                     
T Consensus        84 mvfdlse~s~l~alqdwl~htdins--fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegss  161 (418)
T KOG4273|consen   84 MVFDLSEKSGLDALQDWLPHTDINS--FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSS  161 (418)
T ss_pred             EEEeccchhhhHHHHhhcccccccc--chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccccc
Confidence            9999999999999999976432211  1235677899997532                                     


Q ss_pred             -------cccCHHHHHHHHHhcCCeEEEeecCCC------------CChHHHHHHHH
Q 030856          130 -------RQVSIEEGEAKSRELNVMFIETSAKAG------------FNIKGCSPTIR  167 (170)
Q Consensus       130 -------~~~~~~~~~~~~~~~~~~~~~~S~~~~------------~~v~~~~~~l~  167 (170)
                             .-.....+.++|.++|+.+++.++.+.            .|++.+|.++.
T Consensus       162 llgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~  218 (418)
T KOG4273|consen  162 LLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALN  218 (418)
T ss_pred             ccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhh
Confidence                   002245678889999999999887433            36667766654

>cd01855 YqeH YqeH

Probab=98.87  E-value=4.3e-09  Score=70.16  Aligned_cols=54  Identities=20%  Similarity=0.322  Sum_probs=36.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCC---------CCCccceeeeeeeEEEEEeCCeEEEEEEEecCC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKF---------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   67 (170)
                      ..+++++|.+|+|||||+|+|.+...         ..+..|..+.+  ......+.   .+.++||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLD--LIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeee--eEEEecCC---CCEEEeCcC
Confidence            46899999999999999999997543         12223332222  22333332   478999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01856 YlqF YlqF

Probab=98.86  E-value=1.1e-08  Score=67.12  Aligned_cols=56  Identities=20%  Similarity=0.261  Sum_probs=37.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCCh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   68 (170)
                      ..++++++|.+|+|||||+|++.+.... ....+..+..  ......+   ..+.++||||.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~--~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKG--IQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEee--eEEEEec---CCEEEEECCCC
Confidence            4579999999999999999999987653 2222222222  2223332   35789999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01856 YlqF YlqF

Probab=98.85  E-value=2.1e-08  Score=65.73  Aligned_cols=97  Identities=16%  Similarity=0.100  Sum_probs=62.3

Q ss_pred             cCChh-hhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHh
Q 030856           65 TAGQE-RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE  143 (170)
Q Consensus        65 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~  143 (170)
                      .||+. .........+.++|++++|+|++++..-... .....    . .+.|+++|+||+|+.+....  ....++...
T Consensus         2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~----~-~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~   73 (171)
T cd01856           2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKI----L-GNKPRIIVLNKADLADPKKT--KKWLKYFES   73 (171)
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhH----h-cCCCEEEEEehhhcCChHHH--HHHHHHHHh
Confidence            34533 3344566678899999999999876432221 11111    1 25789999999998543211  111122233


Q ss_pred             cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          144 LNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       144 ~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      .+..++.+|++++.|++++.+.+.+.
T Consensus        74 ~~~~vi~iSa~~~~gi~~L~~~l~~~   99 (171)
T cd01856          74 KGEKVLFVNAKSGKGVKKLLKAAKKL   99 (171)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHH
Confidence            34578999999999999999988764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01859 MJ1464 MJ1464

Probab=98.84  E-value=1.6e-08  Score=65.28  Aligned_cols=56  Identities=23%  Similarity=0.269  Sum_probs=37.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   67 (170)
                      ...+++++|.+|+|||||+|++.++... .+.++.+.+........++   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            4578999999999999999999976532 2233433332222222222   589999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.83  E-value=3.3e-08  Score=63.78  Aligned_cols=82  Identities=20%  Similarity=0.134  Sum_probs=53.9

Q ss_pred             cEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHH
Q 030856           83 SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGC  162 (170)
Q Consensus        83 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~  162 (170)
                      |++++|+|+.+|.+....  ++.. ......+.|+++|+||+|+....++ .+....+....+..++.+|++++.|++++
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            789999999887554432  2221 1112247899999999998543211 11112233333557899999999999999


Q ss_pred             HHHHHh
Q 030856          163 SPTIRR  168 (170)
Q Consensus       163 ~~~l~~  168 (170)
                      .+.+.+
T Consensus        77 ~~~i~~   82 (155)
T cd01849          77 ESAFTK   82 (155)
T ss_pred             HHHHHH
Confidence            998864

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=5.4e-08  Score=68.72  Aligned_cols=150  Identities=19%  Similarity=0.171  Sum_probs=93.4

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhc---C-------CCC----CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMY---D-------KFD----NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~---~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   70 (170)
                      .+.+++||.-+|.-..|||||-.++..   .       +++    .......+++.....+.+.-......=.|+||+.+
T Consensus        50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD  129 (449)
T KOG0460|consen   50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD  129 (449)
T ss_pred             cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence            356789999999999999999777652   1       111    11122233333333333333334455669999998


Q ss_pred             hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc---cCHHHHHHHHHhcCC-
Q 030856           71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ---VSIEEGEAKSRELNV-  146 (170)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~---~~~~~~~~~~~~~~~-  146 (170)
                      |-.....-....|+.|+|+..+|... ...++.+...++ .+ -..+++++||.|+.+..+   +-.-+++++...+|+ 
T Consensus       130 YIKNMItGaaqMDGaILVVaatDG~M-PQTrEHlLLArQ-VG-V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~  206 (449)
T KOG0460|consen  130 YIKNMITGAAQMDGAILVVAATDGPM-PQTREHLLLARQ-VG-VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD  206 (449)
T ss_pred             HHHHhhcCccccCceEEEEEcCCCCC-cchHHHHHHHHH-cC-CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence            88777777778899999999998532 333433332232 22 234788899999874432   223456667777654 


Q ss_pred             ----eEEEeec---CCCC
Q 030856          147 ----MFIETSA---KAGF  157 (170)
Q Consensus       147 ----~~~~~S~---~~~~  157 (170)
                          |++.=||   .+|.
T Consensus       207 Gd~~PvI~GSAL~ALeg~  224 (449)
T KOG0460|consen  207 GDNTPVIRGSALCALEGR  224 (449)
T ss_pred             CCCCCeeecchhhhhcCC
Confidence                7777554   4554

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=2.1e-08  Score=75.42  Aligned_cols=118  Identities=21%  Similarity=0.261  Sum_probs=83.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCC-----C-----------CccceeeeeeeEEEEEeCCeEEEEEEEecCChhh
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-----N-----------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   70 (170)
                      .+..+|.+.-.-.+||||+-++++.....     .           ......++..+.......+..+++.++||||+-+
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD  116 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD  116 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence            35578899999999999999987742110     0           1112233444444444445578999999999999


Q ss_pred             hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856           71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~  128 (170)
                      +.-..+..++--|+.+++++....-.-+....|.+ +.+   -++|.+.++||+|+..
T Consensus       117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~r---y~vP~i~FiNKmDRmG  170 (721)
T KOG0465|consen  117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKR---YNVPRICFINKMDRMG  170 (721)
T ss_pred             EEEEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHh---cCCCeEEEEehhhhcC
Confidence            88888888899999999999876544444455533 333   3799999999999853

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.81  E-value=2.1e-08  Score=71.00  Aligned_cols=57  Identities=23%  Similarity=0.303  Sum_probs=39.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC-CCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   69 (170)
                      ..++++++|.||+|||||+|++.+... .....+..+....  .+..+.   .+.++||||..
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQ--WIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEE--EEEeCC---cEEEEECCCcC
Confidence            568999999999999999999998765 2333344333332  222222   47899999954

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.80  E-value=2.3e-08  Score=70.42  Aligned_cols=56  Identities=25%  Similarity=0.343  Sum_probs=38.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCCh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   68 (170)
                      ..++++++|.||+|||||+|++.+.... ....+..+...  ..+....   .+.++||||.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQ--QWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecce--EEEEeCC---CEEEEECCCc
Confidence            4689999999999999999999976543 22233333222  2232322   4789999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.79  E-value=9.7e-09  Score=68.86  Aligned_cols=113  Identities=13%  Similarity=0.143  Sum_probs=78.1

Q ss_pred             EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCC----------ChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCC
Q 030856           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA----------SRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTD  125 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D  125 (170)
                      ...+.+.|.+|+..-+..|.+++.+...++|++.++          +...++.-...+..+..+.. .+.+++++.||.|
T Consensus       198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkD  277 (359)
T KOG0085|consen  198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD  277 (359)
T ss_pred             hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhh
Confidence            456789999999988899999999988888876655          33445555566666655543 6789999999999


Q ss_pred             CCCC----------------cccCHHHHHHHHHhc---------CC-eEEEeecCCCCChHHHHHHHHhh
Q 030856          126 LVEK----------------RQVSIEEGEAKSREL---------NV-MFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       126 ~~~~----------------~~~~~~~~~~~~~~~---------~~-~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      +.++                .+.+.+.++++....         .+ .-..+-|.+.+|+.-+|..+.+.
T Consensus       278 lLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDt  347 (359)
T KOG0085|consen  278 LLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDT  347 (359)
T ss_pred             hhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHH
Confidence            8643                233455666665432         12 22335577778999888876543

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.79  E-value=2.6e-06  Score=54.24  Aligned_cols=145  Identities=14%  Similarity=0.167  Sum_probs=75.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecC-Chhh---------------
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA-GQER---------------   70 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-g~~~---------------   70 (170)
                      ...++|++.|+|||||||++.++...-....+ ...  -+....+.-++...-|.+.|+. |...               
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~-kvg--Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY   79 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGY-KVG--GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY   79 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHHhcCc-eee--eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence            34689999999999999999988753221111 111  2222233334455556666665 2110               


Q ss_pred             ----------hhhhhhhhhcCCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHH
Q 030856           71 ----------FRSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEA  139 (170)
Q Consensus        71 ----------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~  139 (170)
                                .....+..+..+|++|+  |--.|  ++.. ..+...+......+.|++.++.+.+..       ...++
T Consensus        80 ~V~v~~le~i~~~al~rA~~~aDvIII--DEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr~-------P~v~~  148 (179)
T COG1618          80 GVNVEGLEEIAIPALRRALEEADVIII--DEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSRH-------PLVQR  148 (179)
T ss_pred             EeeHHHHHHHhHHHHHHHhhcCCEEEE--ecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccCC-------hHHHH
Confidence                      11122233445676654  43322  2222 444455555555678888888777641       11222


Q ss_pred             HHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          140 KSRELNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       140 ~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      + +..+..++.   .+.+|-+.+++.+...
T Consensus       149 i-k~~~~v~v~---lt~~NR~~i~~~Il~~  174 (179)
T COG1618         149 I-KKLGGVYVF---LTPENRNRILNEILSV  174 (179)
T ss_pred             h-hhcCCEEEE---EccchhhHHHHHHHHH
Confidence            3 333333332   3445555777777654

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.78  E-value=1.4e-07  Score=67.60  Aligned_cols=143  Identities=16%  Similarity=0.141  Sum_probs=78.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCC---------Ccc------------ceeeeeeeEEEEE-------------e
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN---------TYQ------------ATIGIDFLSKTMY-------------L   53 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~---------~~~------------~~~~~~~~~~~~~-------------~   53 (170)
                      ..-.++++|++|+||||++..+.......         +..            .-.+..+......             .
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~  192 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA  192 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            35678999999999999999877531111         000            0011111111000             0


Q ss_pred             CCeEEEEEEEecCChhhhhhh----hhhh--------hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEE
Q 030856           54 EDRTVRLQLWDTAGQERFRSL----IPSY--------IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVG  121 (170)
Q Consensus        54 ~~~~~~~~i~D~~g~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~  121 (170)
                      ....+.+.++||||.......    ...+        -...+..++|.|++..  .+.+... .......   -+.-+|+
T Consensus       193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a-~~f~~~~---~~~giIl  266 (318)
T PRK10416        193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQA-KAFHEAV---GLTGIIL  266 (318)
T ss_pred             HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHHH-HHHHhhC---CCCEEEE
Confidence            113357899999996532221    1111        1246788999998843  2222221 2222211   2346777


Q ss_pred             eCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHH
Q 030856          122 NKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGC  162 (170)
Q Consensus       122 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~  162 (170)
                      ||.|....    ...+...+...++|+..++  +|++++++
T Consensus       267 TKlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl  301 (318)
T PRK10416        267 TKLDGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDL  301 (318)
T ss_pred             ECCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence            99995321    2445556677799988887  77777664

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.78  E-value=2e-08  Score=72.06  Aligned_cols=57  Identities=25%  Similarity=0.353  Sum_probs=39.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   69 (170)
                      ..++++++|.|+||||||||+|.+...- ....|..+...+  .+..+.   .+.++||||.-
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q--~i~~~~---~i~LlDtPGii  188 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQ--WIKLDD---GIYLLDTPGII  188 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceE--EEEcCC---CeEEecCCCcC
Confidence            4588999999999999999999998763 333443333333  232333   37899999944

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.77  E-value=2.5e-07  Score=63.19  Aligned_cols=95  Identities=15%  Similarity=0.093  Sum_probs=54.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC--CCCCCc-cceeeeeeeEEEEEeC-CeEEEEEEEecCChhhhhh------hhh
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDNTY-QATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRS------LIP   76 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~--~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~------~~~   76 (170)
                      .+-.-|+++|++++|||+|+|.+.+.  .+.... .+..+.....+..... +....+.++||+|......      ...
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~   84 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL   84 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence            34567899999999999999999998  553221 1111111222221111 2346799999999654322      112


Q ss_pred             hhhcC--CcEEEEEEeCCC-hhhHHhHH
Q 030856           77 SYIRD--SSVAVVVYDVAS-RQSFLNTS  101 (170)
Q Consensus        77 ~~~~~--~d~~i~v~d~~~-~~~~~~~~  101 (170)
                      ..+..  +|.+|+..+... ...++.+.
T Consensus        85 ~~l~~llss~~i~n~~~~~~~~~~~~l~  112 (224)
T cd01851          85 FALATLLSSVLIYNSWETILGDDLAALM  112 (224)
T ss_pred             HHHHHHHhCEEEEeccCcccHHHHHHHH
Confidence            22233  788888777654 33344433

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.76  E-value=2.5e-08  Score=64.31  Aligned_cols=56  Identities=20%  Similarity=0.242  Sum_probs=38.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCC-CCCccceeeeeeeEEEEEeCCeEEEEEEEecCC
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   67 (170)
                      ....+++++|.+|+|||||+|.+.+... .....+..+.+.....  .+   ..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~--~~---~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVK--LD---NKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEE--ec---CCEEEEECCC
Confidence            3568899999999999999999998653 2222333333333222  22   2588999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=1.8e-08  Score=72.96  Aligned_cols=118  Identities=21%  Similarity=0.280  Sum_probs=92.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC--------CCCC--------CccceeeeeeeEEEEEeCCeEEEEEEEecCChhh
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYD--------KFDN--------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~--------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   70 (170)
                      .+-.+|+++..-.+||||.-.++++-        ..+.        ...+..+++.+...+..+.++.++.++||||+.+
T Consensus        35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd  114 (753)
T KOG0464|consen   35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD  114 (753)
T ss_pred             hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence            45578999999999999999998742        1111        1123356677777888888999999999999999


Q ss_pred             hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856           71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~  128 (170)
                      ++-..+.+++--|+++.|||.+..-.-+.+..|.+    ...-++|...++||+|...
T Consensus       115 f~leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~  168 (753)
T KOG0464|consen  115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLA  168 (753)
T ss_pred             EEEEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhh
Confidence            99999999999999999999987655566677733    3335789999999999753

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.74  E-value=7.4e-08  Score=61.13  Aligned_cols=77  Identities=18%  Similarity=0.184  Sum_probs=52.9

Q ss_pred             hhhhcCCcEEEEEEeCCChhhHH--hHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeec
Q 030856           76 PSYIRDSSVAVVVYDVASRQSFL--NTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSA  153 (170)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~  153 (170)
                      ...+..+|++++|+|+.++.+..  .+..++...    ..+.|+++|+||+|+.++..  .....+.....+..++++|+
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa   79 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA   79 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence            44578899999999998875533  233333322    24689999999999854332  23344555566788999999


Q ss_pred             CCCCC
Q 030856          154 KAGFN  158 (170)
Q Consensus       154 ~~~~~  158 (170)
                      .++.+
T Consensus        80 ~~~~~   84 (141)
T cd01857          80 LKENA   84 (141)
T ss_pred             cCCCc
Confidence            98864

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.74  E-value=2e-08  Score=64.51  Aligned_cols=24  Identities=33%  Similarity=0.570  Sum_probs=21.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      -.++++|++|||||||+|+|....
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            567999999999999999999863

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.73  E-value=1.6e-07  Score=65.90  Aligned_cols=93  Identities=16%  Similarity=0.097  Sum_probs=55.8

Q ss_pred             EEEEEEEecCChhhhhhhhh-------hhh-----cCCcEEEEEEeCCCh-hhHHhHHHHHHHHHHhcCCCCeEEEEEeC
Q 030856           57 TVRLQLWDTAGQERFRSLIP-------SYI-----RDSSVAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNK  123 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~-------~~~-----~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~vvv~nK  123 (170)
                      .+.+.++||||.........       ...     ..+|..++|.|++.. +.+....    .+.+..   -+--+|.||
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~----~f~~~~---~~~g~IlTK  226 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAK----VFNEAV---GLTGIILTK  226 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHH----HHHhhC---CCCEEEEEc
Confidence            46789999999654322211       111     138999999998743 2333222    222222   134667799


Q ss_pred             CCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHH
Q 030856          124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGC  162 (170)
Q Consensus       124 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~  162 (170)
                      .|....    ...+...+...++|+..++  +|++++++
T Consensus       227 lDe~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl  259 (272)
T TIGR00064       227 LDGTAK----GGIILSIAYELKLPIKFIG--VGEKIDDL  259 (272)
T ss_pred             cCCCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhC
Confidence            996332    2445556667788888887  77777665

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.72  E-value=8.4e-08  Score=79.42  Aligned_cols=114  Identities=22%  Similarity=0.248  Sum_probs=70.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCc----cceeeee-eeEEEEEeCCeEEEEEEEecCChh--------hhhhhhhhh
Q 030856           12 LVFLGDQSVGKTSIITRFMYDKFDNTY----QATIGID-FLSKTMYLEDRTVRLQLWDTAGQE--------RFRSLIPSY   78 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~   78 (170)
                      .+++|++|+||||+++.- +-.++-..    ..+.+.. .....+...+   ...++||+|..        .....|..+
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~f  189 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLGF  189 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC---CEEEEcCCCccccCCCcccccHHHHHHH
Confidence            589999999999999975 33333111    0110100 0001111112   45689999922        122234444


Q ss_pred             hc---------CCcEEEEEEeCCC-----hhh----HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 030856           79 IR---------DSSVAVVVYDVAS-----RQS----FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK  129 (170)
Q Consensus        79 ~~---------~~d~~i~v~d~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~  129 (170)
                      +.         ..|++|+++|+.+     ++.    -..++..+.++....+-..|+.|+.||+|+...
T Consensus       190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G  258 (1169)
T TIGR03348       190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG  258 (1169)
T ss_pred             HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence            32         4799999999763     221    134577788888888889999999999998643

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.71  E-value=1.8e-07  Score=67.30  Aligned_cols=93  Identities=12%  Similarity=0.065  Sum_probs=55.1

Q ss_pred             EEEEEEecCChhhhhhh----hhhh--hcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc
Q 030856           58 VRLQLWDTAGQERFRSL----IPSY--IRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~  130 (170)
                      +.+.++||+|.......    ....  .-+.|.+++|.|++... ..+.+..    +....   -+--+++||.|...  
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~----f~~~~---~~~giIlTKlD~~~--  293 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQARE----FNEAV---GIDGVILTKVDADA--  293 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHH----HHhcC---CCCEEEEeeecCCC--
Confidence            46899999996532211    1111  22578899999987532 2222222    22211   22456679999743  


Q ss_pred             ccCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 030856          131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKGCS  163 (170)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (170)
                        ....+...+...+.|+..++  +|++++++.
T Consensus       294 --~~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~  322 (336)
T PRK14974        294 --KGGAALSIAYVIGKPILFLG--VGQGYDDLI  322 (336)
T ss_pred             --CccHHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence              22345556666788888887  788887654

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.71  E-value=1e-07  Score=67.19  Aligned_cols=97  Identities=24%  Similarity=0.224  Sum_probs=62.6

Q ss_pred             cCChhh-hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHh
Q 030856           65 TAGQER-FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE  143 (170)
Q Consensus        65 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~  143 (170)
                      .||+.. ........+..+|++++|+|+.+|.+....  ++....    .+.|+++|+||+|+.+....  ....+....
T Consensus         4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~   75 (276)
T TIGR03596         4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPAVT--KQWLKYFEE   75 (276)
T ss_pred             ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHHHH--HHHHHHHHH
Confidence            356442 233456668899999999999876443321  111111    25799999999998542211  111112233


Q ss_pred             cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          144 LNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       144 ~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      .+..++.+|++++.|++++.+.+.+.
T Consensus        76 ~~~~vi~iSa~~~~gi~~L~~~i~~~  101 (276)
T TIGR03596        76 KGIKALAINAKKGKGVKKIIKAAKKL  101 (276)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHH
Confidence            45688999999999999998888653

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.70  E-value=1.2e-08  Score=70.98  Aligned_cols=162  Identities=18%  Similarity=0.172  Sum_probs=97.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC---CCCCCccceeeeeee--------------------------------EEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYD---KFDNTYQATIGIDFL--------------------------------SKTM   51 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~---~~~~~~~~~~~~~~~--------------------------------~~~~   51 (170)
                      .-.++|.-+|....||||+++++.+-   ++..+..+..+....                                ....
T Consensus        36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~  115 (466)
T KOG0466|consen   36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP  115 (466)
T ss_pred             eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence            34689999999999999999987753   111111111110000                                0000


Q ss_pred             EeCC---eEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856           52 YLED---RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        52 ~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~  128 (170)
                      ...+   .-..+.|.|+||++-.....-.-..-.|+.++++..+.+..-....+.+..+.-.  .=..++++-||.|+..
T Consensus       116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM--~LkhiiilQNKiDli~  193 (466)
T KOG0466|consen  116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM--KLKHIIILQNKIDLIK  193 (466)
T ss_pred             CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh--hhceEEEEechhhhhh
Confidence            0011   1135789999998865544333333468888888776432222222222222211  1245788899999976


Q ss_pred             Cccc--CHHHHHHHHHhc---CCeEEEeecCCCCChHHHHHHHHhhC
Q 030856          129 KRQV--SIEEGEAKSREL---NVMFIETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       129 ~~~~--~~~~~~~~~~~~---~~~~~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                      +.+.  ..++.+.|.+.-   +.|++++||.-..|++-+.++|+++|
T Consensus       194 e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI  240 (466)
T KOG0466|consen  194 ESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI  240 (466)
T ss_pred             HHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence            5433  235556666543   56999999999999999999999875

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.68  E-value=2.1e-07  Score=60.22  Aligned_cols=21  Identities=24%  Similarity=0.460  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030856           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~   32 (170)
                      +.++|..|+|||||++++...
T Consensus         3 ~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            578999999999999998865

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK13796 GTPase YqeH; Provisional

Probab=98.68  E-value=2.9e-07  Score=67.31  Aligned_cols=91  Identities=27%  Similarity=0.402  Sum_probs=60.3

Q ss_pred             hhhhhhhhhhcCCc-EEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHH----HHHHhc
Q 030856           70 RFRSLIPSYIRDSS-VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE----AKSREL  144 (170)
Q Consensus        70 ~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~----~~~~~~  144 (170)
                      ++....... ...+ .+++|+|+.+..     ..|...+.+.. .+.|+++|+||+|+... ....++..    .+++..
T Consensus        58 ~~~~~l~~i-~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~  129 (365)
T PRK13796         58 DFLKLLNGI-GDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL  129 (365)
T ss_pred             HHHHHHHhh-cccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence            444444433 4444 999999988742     22333444433 26789999999999642 33333333    335556


Q ss_pred             CC---eEEEeecCCCCChHHHHHHHHh
Q 030856          145 NV---MFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus       145 ~~---~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ++   .++.+||+++.|++++++.|.+
T Consensus       130 g~~~~~v~~vSAk~g~gI~eL~~~I~~  156 (365)
T PRK13796        130 GLRPVDVVLISAQKGHGIDELLEAIEK  156 (365)
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHH
Confidence            66   6899999999999999999865

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.66  E-value=1.5e-07  Score=64.88  Aligned_cols=117  Identities=15%  Similarity=0.272  Sum_probs=70.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCc----cceeeeeeeEEEEEeCCeEEEEEEEecCChhh-------hhh---
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTY----QATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRS---   73 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~---   73 (170)
                      -.++|+.+|..|.|||||++.|++-.+....    .|............-.+-.+++++.||.|..+       |..   
T Consensus        41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd  120 (406)
T KOG3859|consen   41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD  120 (406)
T ss_pred             ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence            3689999999999999999999988775332    23333222233333346678999999999322       111   


Q ss_pred             ----hhhhh-------------h--cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856           74 ----LIPSY-------------I--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        74 ----~~~~~-------------~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~  128 (170)
                          ....|             +  .+.+++++.+..+.. ++..+.-   ...+..+.++.++-|+-|.|...
T Consensus       121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDL---vtmk~LdskVNIIPvIAKaDtis  190 (406)
T KOG3859|consen  121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDL---VTMKKLDSKVNIIPVIAKADTIS  190 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHH---HHHHHHhhhhhhHHHHHHhhhhh
Confidence                11111             1  145788888887752 3333321   11122234577777788998654

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.63  E-value=4.2e-06  Score=63.07  Aligned_cols=82  Identities=18%  Similarity=0.224  Sum_probs=57.5

Q ss_pred             EEEEEecCC-------------hhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCC
Q 030856           59 RLQLWDTAG-------------QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKT  124 (170)
Q Consensus        59 ~~~i~D~~g-------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~  124 (170)
                      +..+.|.||             .+....+...|+.+.++||+|+--.   +.+.-+.....+-..++ .+.-.++|.||.
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTKV  489 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTKV  489 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence            678999999             2334567888899999999998633   23333333333433333 466789999999


Q ss_pred             CCCCCcccCHHHHHHHHHh
Q 030856          125 DLVEKRQVSIEEGEAKSRE  143 (170)
Q Consensus       125 D~~~~~~~~~~~~~~~~~~  143 (170)
                      |+.+..-.++..++.....
T Consensus       490 DlAEknlA~PdRI~kIleG  508 (980)
T KOG0447|consen  490 DLAEKNVASPSRIQQIIEG  508 (980)
T ss_pred             chhhhccCCHHHHHHHHhc
Confidence            9988777788888877654

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.61  E-value=2.4e-07  Score=65.62  Aligned_cols=97  Identities=22%  Similarity=0.200  Sum_probs=62.9

Q ss_pred             cCChhh-hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHh
Q 030856           65 TAGQER-FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE  143 (170)
Q Consensus        65 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~  143 (170)
                      .||+.. ........+..+|++++|+|+.++.+.+.  .++....    .+.|+++|+||+|+.+...  .+...++...
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~   78 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFEE   78 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence            566542 23345566889999999999987644332  1222221    2588999999999853211  1112222234


Q ss_pred             cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          144 LNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       144 ~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      .+.+++.+|++++.|++++.+.+.+.
T Consensus        79 ~~~~vi~vSa~~~~gi~~L~~~l~~~  104 (287)
T PRK09563         79 QGIKALAINAKKGQGVKKILKAAKKL  104 (287)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHH
Confidence            46788999999999999999887653

>PRK12288 GTPase RsgA; Reviewed

Probab=98.60  E-value=1.3e-07  Score=68.50  Aligned_cols=24  Identities=29%  Similarity=0.549  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .++|+|.+|||||||+|+|.+...
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~~~  230 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPEAE  230 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhccccc
Confidence            378999999999999999997643

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.58  E-value=2.1e-06  Score=63.58  Aligned_cols=133  Identities=17%  Similarity=0.136  Sum_probs=70.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc------CCC---CC-Cccc-----------eeeeeeeEEEEEeC-------------
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMY------DKF---DN-TYQA-----------TIGIDFLSKTMYLE-------------   54 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~------~~~---~~-~~~~-----------~~~~~~~~~~~~~~-------------   54 (170)
                      +--|+++|++|+||||++.+|..      .+.   .. .+.+           ..+..+.......+             
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~  179 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK  179 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence            46789999999999999998863      111   01 1110           01111111000000             


Q ss_pred             CeEEEEEEEecCChhhhhhh----hhhh--hcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856           55 DRTVRLQLWDTAGQERFRSL----IPSY--IRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        55 ~~~~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~  127 (170)
                      ...+.+.|+||+|.......    ...+  ....+-+++|.|++-.. ..+.+    ..+...   --+--+|+||.|..
T Consensus       180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a----~~F~~~---~~~~g~IlTKlD~~  252 (429)
T TIGR01425       180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA----KAFKDS---VDVGSVIITKLDGH  252 (429)
T ss_pred             hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH----HHHHhc---cCCcEEEEECccCC
Confidence            12467899999995543221    1111  22467899999987432 22222    222221   13456778999963


Q ss_pred             CCcccCHHHHHHHHHhcCCeEEEee
Q 030856          128 EKRQVSIEEGEAKSRELNVMFIETS  152 (170)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~S  152 (170)
                      .    ..-.+.......+.|+..++
T Consensus       253 a----rgG~aLs~~~~t~~PI~fig  273 (429)
T TIGR01425       253 A----KGGGALSAVAATKSPIIFIG  273 (429)
T ss_pred             C----CccHHhhhHHHHCCCeEEEc
Confidence            2    22334555666677666654

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.57  E-value=5.5e-07  Score=64.74  Aligned_cols=154  Identities=15%  Similarity=0.186  Sum_probs=87.4

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCC------------------ccceeeeeeeEE------------------
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT------------------YQATIGIDFLSK------------------   49 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~------------------~~~~~~~~~~~~------------------   49 (170)
                      +--+.+|+++|...+|||||+-.|.++..++.                  ..++.+.+....                  
T Consensus       130 DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~Ld  209 (641)
T KOG0463|consen  130 DFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLD  209 (641)
T ss_pred             cceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccc
Confidence            34578999999999999999988876544321                  111222221111                  


Q ss_pred             -EEEeCCeEEEEEEEecCChhhhhhhhhhhhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 030856           50 -TMYLEDRTVRLQLWDTAGQERFRSLIPSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL  126 (170)
Q Consensus        50 -~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~  126 (170)
                       .-...+..--++|+|.+|++.|......-+.  -.|...+++-++-. -....++.   +.-.....+|+++|.+|+|+
T Consensus       210 WvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEH---LgLALaL~VPVfvVVTKIDM  285 (641)
T KOG0463|consen  210 WVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEH---LGLALALHVPVFVVVTKIDM  285 (641)
T ss_pred             ceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHh---hhhhhhhcCcEEEEEEeecc
Confidence             1111222235799999999987654332222  24666666665421 11111222   22222357999999999998


Q ss_pred             CCCccc--CHHHHHHHHH--------------------------hcCCeEEEeecCCCCChHHHH
Q 030856          127 VEKRQV--SIEEGEAKSR--------------------------ELNVMFIETSAKAGFNIKGCS  163 (170)
Q Consensus       127 ~~~~~~--~~~~~~~~~~--------------------------~~~~~~~~~S~~~~~~v~~~~  163 (170)
                      ..+..+  +.....++.+                          +.-|++|.+|-.+|.|++-+.
T Consensus       286 CPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLk  350 (641)
T KOG0463|consen  286 CPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLK  350 (641)
T ss_pred             CcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHH
Confidence            754322  1111222222                          223688999999999987643

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.55  E-value=4.8e-06  Score=60.97  Aligned_cols=154  Identities=18%  Similarity=0.238  Sum_probs=89.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC-----------------CCC----CCccceeeeeeeEE---EEEe-CCeEEEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD-----------------KFD----NTYQATIGIDFLSK---TMYL-EDRTVRLQL   62 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~-----------------~~~----~~~~~~~~~~~~~~---~~~~-~~~~~~~~i   62 (170)
                      -.+=|++|||..+|||||++++-..                 ..|    ..+.-|....+.+.   .+.. ++..+++++
T Consensus        16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL   95 (492)
T PF09547_consen   16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL   95 (492)
T ss_pred             CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence            3467899999999999999997742                 111    11222222233322   2223 466789999


Q ss_pred             EecCChh-----hh---------hhhhhhh---------------hc--CCcEEEEEEeCC--C--hhhHHhH-HHHHHH
Q 030856           63 WDTAGQE-----RF---------RSLIPSY---------------IR--DSSVAVVVYDVA--S--RQSFLNT-SKWIDE  106 (170)
Q Consensus        63 ~D~~g~~-----~~---------~~~~~~~---------------~~--~~d~~i~v~d~~--~--~~~~~~~-~~~~~~  106 (170)
                      +|+.|..     .|         ...|..+               +.  ..-++++.-|-+  +  ++.|... .+-+.+
T Consensus        96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E  175 (492)
T PF09547_consen   96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE  175 (492)
T ss_pred             EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence            9998811     00         0001110               11  234677766643  2  3444333 333344


Q ss_pred             HHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCC--CChHHHHHHH
Q 030856          107 VRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG--FNIKGCSPTI  166 (170)
Q Consensus       107 ~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~--~~v~~~~~~l  166 (170)
                      +..   -+.|+++++|-.+-  ......+.+.++..+++++++++++.+-  +.+..+++.+
T Consensus       176 Lk~---igKPFvillNs~~P--~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~v  232 (492)
T PF09547_consen  176 LKE---IGKPFVILLNSTKP--YSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEV  232 (492)
T ss_pred             HHH---hCCCEEEEEeCCCC--CCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHH
Confidence            433   47999999998873  3344567788888999999999887643  3444444443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.54  E-value=8.2e-07  Score=60.81  Aligned_cols=70  Identities=19%  Similarity=0.248  Sum_probs=50.3

Q ss_pred             EEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChh-------hHHhHHHHHHHHHH----hcCCCCeEEEEEeCCCC
Q 030856           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ-------SFLNTSKWIDEVRT----ERGSDVIIVLVGNKTDL  126 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------~~~~~~~~~~~~~~----~~~~~~~~vvv~nK~D~  126 (170)
                      +.++.+|.+|+.+.+..|..++....++|||..++.-.       +-..+++-+..+..    ..-..+.+++++||.|+
T Consensus       202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl  281 (379)
T KOG0099|consen  202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL  281 (379)
T ss_pred             cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence            56899999999999999999999999999999987321       11223332222222    12245778999999997


Q ss_pred             C
Q 030856          127 V  127 (170)
Q Consensus       127 ~  127 (170)
                      .
T Consensus       282 l  282 (379)
T KOG0099|consen  282 L  282 (379)
T ss_pred             H
Confidence            4

>PRK01889 GTPase RsgA; Reviewed

Probab=98.54  E-value=7.5e-07  Score=64.94  Aligned_cols=84  Identities=19%  Similarity=0.177  Sum_probs=56.7

Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCC
Q 030856           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (170)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  158 (170)
                      ..++|.+++|+++..+-....+..++..+..   .+++.++|+||+|+.+......+....+  ..+.+++.+|++++.|
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g~g  184 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDGEG  184 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCCcc
Confidence            5689999999999633333344554444333   3677888999999965321111222222  3467999999999999


Q ss_pred             hHHHHHHHH
Q 030856          159 IKGCSPTIR  167 (170)
Q Consensus       159 v~~~~~~l~  167 (170)
                      ++++..+|.
T Consensus       185 l~~L~~~L~  193 (356)
T PRK01889        185 LDVLAAWLS  193 (356)
T ss_pred             HHHHHHHhh
Confidence            999998875

>PRK12289 GTPase RsgA; Reviewed

Probab=98.53  E-value=1.8e-07  Score=67.77  Aligned_cols=23  Identities=39%  Similarity=0.561  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      .++|+|++|+|||||+|+|.+..
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~  196 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDV  196 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCcc
Confidence            47999999999999999999754

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.51  E-value=2.7e-07  Score=63.87  Aligned_cols=24  Identities=33%  Similarity=0.412  Sum_probs=21.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      -.++++|++|+|||||+|++.+..
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~  144 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSV  144 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhh
Confidence            468999999999999999999754

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.50  E-value=1.9e-06  Score=56.24  Aligned_cols=134  Identities=17%  Similarity=0.239  Sum_probs=67.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEec-CChh--------------------
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT-AGQE--------------------   69 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~g~~--------------------   69 (170)
                      ||++.|++|+|||||+++++..-... ..+..++  .......++...-+.+.|. .|..                    
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v~Gf--~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPVGGF--YTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHT-CGGEEEE--EEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhcc-CCccceE--EeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            68999999999999999988543111 1122222  1122223344444555555 2211                    


Q ss_pred             --hhhh----hhhhhhcCCcEEEEEEeCCChhhHHh-HHHHHHHHHHhcCCCCeEEEEEeCC-CCCCCcccCHHHHHHHH
Q 030856           70 --RFRS----LIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT-DLVEKRQVSIEEGEAKS  141 (170)
Q Consensus        70 --~~~~----~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~vvv~nK~-D~~~~~~~~~~~~~~~~  141 (170)
                        .+..    .....+..+|  ++++|=-.+  ++. ...|.+.+......+.|++.++.+. +.        ...+++.
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~--mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~  145 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGK--MELKSPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIK  145 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---ST--TCCC-CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccch--hhhcCHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHH
Confidence              0111    1111124555  666673322  111 2345555555555678888887776 32        2346677


Q ss_pred             HhcCCeEEEeecCCCCCh
Q 030856          142 RELNVMFIETSAKAGFNI  159 (170)
Q Consensus       142 ~~~~~~~~~~S~~~~~~v  159 (170)
                      +..++.+++++..+.+.+
T Consensus       146 ~~~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  146 RRPDVKIFEVTEENRDAL  163 (168)
T ss_dssp             TTTTSEEEE--TTTCCCH
T ss_pred             hCCCcEEEEeChhHHhhH
Confidence            777899999977766554

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.50  E-value=2.4e-06  Score=62.34  Aligned_cols=140  Identities=12%  Similarity=0.082  Sum_probs=72.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCC--C-Cccceeeeeee---------------EEE-EEe-----------CCeEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFD--N-TYQATIGIDFL---------------SKT-MYL-----------EDRTV   58 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~--~-~~~~~~~~~~~---------------~~~-~~~-----------~~~~~   58 (170)
                      .-.++++|++|+||||++.+|......  . ......+.+.+               ... ...           .....
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~  216 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK  216 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence            457889999999999999998754210  0 11111111111               000 000           01234


Q ss_pred             EEEEEecCChhhhhhhhhh---hhc---CCcEEEEEEeCCC-hhhHHhHHHHHHHHHHhcCCC--CeEEEEEeCCCCCCC
Q 030856           59 RLQLWDTAGQERFRSLIPS---YIR---DSSVAVVVYDVAS-RQSFLNTSKWIDEVRTERGSD--VIIVLVGNKTDLVEK  129 (170)
Q Consensus        59 ~~~i~D~~g~~~~~~~~~~---~~~---~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~--~~~vvv~nK~D~~~~  129 (170)
                      .+.++||+|..........   .+.   ...-.++|++++. .+.+......+..........  -+--+|.||.|... 
T Consensus       217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~-  295 (374)
T PRK14722        217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS-  295 (374)
T ss_pred             CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC-
Confidence            7899999996643322111   122   2345688888875 344444333222222111000  12345669999632 


Q ss_pred             cccCHHHHHHHHHhcCCeEEEee
Q 030856          130 RQVSIEEGEAKSRELNVMFIETS  152 (170)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~S  152 (170)
                         ..-.+...+...++|+..++
T Consensus       296 ---~~G~~l~~~~~~~lPi~yvt  315 (374)
T PRK14722        296 ---NLGGVLDTVIRYKLPVHYVS  315 (374)
T ss_pred             ---CccHHHHHHHHHCcCeEEEe
Confidence               33556666777777666654

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.47  E-value=3.3e-07  Score=64.26  Aligned_cols=22  Identities=32%  Similarity=0.628  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ..+++|++|+|||||+|+|...
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~  187 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPE  187 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCch
Confidence            5689999999999999999974

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=98.46  E-value=1.6e-05  Score=52.42  Aligned_cols=86  Identities=17%  Similarity=0.168  Sum_probs=59.4

Q ss_pred             eEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHH
Q 030856           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE  135 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~  135 (170)
                      ..+.+.++|+|+...  ......+..+|.++++...+. .+...+...++.+...   +.|+.+|+||.|....   ..+
T Consensus        91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~  161 (179)
T cd03110          91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE  161 (179)
T ss_pred             cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence            356789999997542  233455788999999999773 4556666666655543   4678899999996322   345


Q ss_pred             HHHHHHHhcCCeEEE
Q 030856          136 EGEAKSRELNVMFIE  150 (170)
Q Consensus       136 ~~~~~~~~~~~~~~~  150 (170)
                      +.+++++..+++++.
T Consensus       162 ~~~~~~~~~~~~vl~  176 (179)
T cd03110         162 EIEDYCEEEGIPILG  176 (179)
T ss_pred             HHHHHHHHcCCCeEE
Confidence            677788888887653

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.46  E-value=3.4e-07  Score=66.88  Aligned_cols=56  Identities=23%  Similarity=0.393  Sum_probs=36.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC------CCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKF------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   70 (170)
                      .++.++|.+|+|||||+|++.+...      ..+..|..+.+..  ....++   .+.++||||...
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~~~---~~~l~DtPG~~~  216 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPLDD---GHSLYDTPGIIN  216 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEeCC---CCEEEECCCCCC
Confidence            5899999999999999999997532      1222233332222  222222   257999999543

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK13695 putative NTPase; Provisional

Probab=98.46  E-value=7.9e-06  Score=53.71  Aligned_cols=78  Identities=10%  Similarity=0.059  Sum_probs=43.1

Q ss_pred             hcCCcEEEEEEeCCCh-hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCC
Q 030856           79 IRDSSVAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF  157 (170)
Q Consensus        79 ~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  157 (170)
                      +.++++  +++|--.+ +...  ..+...+......+.|++++.+|...       ......+....++.++++   +.+
T Consensus        94 l~~~~~--lllDE~~~~e~~~--~~~~~~l~~~~~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~---~~~  159 (174)
T PRK13695         94 LEEADV--IIIDEIGKMELKS--PKFVKAVEEVLDSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL---TPE  159 (174)
T ss_pred             cCCCCE--EEEECCCcchhhh--HHHHHHHHHHHhCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE---cch
Confidence            445666  57772111 1111  22333333333457899999887532       133455666677777777   444


Q ss_pred             ChHHHHHHHHhhC
Q 030856          158 NIKGCSPTIRRLI  170 (170)
Q Consensus       158 ~v~~~~~~l~~~i  170 (170)
                      |=+++.+.+.++|
T Consensus       160 ~r~~~~~~~~~~~  172 (174)
T PRK13695        160 NRDSLPFEILNRL  172 (174)
T ss_pred             hhhhHHHHHHHHH
Confidence            5567777776643

>PRK13796 GTPase YqeH; Provisional

Probab=98.45  E-value=3.9e-07  Score=66.64  Aligned_cols=56  Identities=23%  Similarity=0.344  Sum_probs=35.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCC------CCccceeeeeeeEEEEEeCCeEEEEEEEecCChh
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFD------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   69 (170)
                      ..++.++|.+|+|||||+|+|......      .+..|.++.+..  .+..++.   ..++||||..
T Consensus       160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~--~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKI--EIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeE--EEEcCCC---cEEEECCCcc
Confidence            357999999999999999999864311      122233333322  2222222   3799999964

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.43  E-value=1.3e-06  Score=71.51  Aligned_cols=115  Identities=20%  Similarity=0.167  Sum_probs=66.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeC-CeEEEEEEEecCChh--------hhhhhhhhh---
Q 030856           12 LVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQE--------RFRSLIPSY---   78 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~--------~~~~~~~~~---   78 (170)
                      -+++|++|+||||++..-- ..++ .......+..... +..++ .-+-.-.++||.|..        .-...|..+   
T Consensus       128 y~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~g-T~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l  205 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPG-TRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL  205 (1188)
T ss_pred             eEEecCCCCCcchHHhccc-ccCcchhhhccccccCCC-CcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence            3789999999999986522 2222 1111111101000 11111 111245788998822        122334433   


Q ss_pred             ------hcCCcEEEEEEeCCC-----hhh----HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856           79 ------IRDSSVAVVVYDVAS-----RQS----FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        79 ------~~~~d~~i~v~d~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~  128 (170)
                            .+..|+||++.|+.+     +..    ...++..++++.....-..|++|++||.|+..
T Consensus       206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence                  235799999999763     111    22356667777777777899999999999865

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.39  E-value=9.2e-06  Score=61.56  Aligned_cols=134  Identities=16%  Similarity=0.145  Sum_probs=70.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCC---Cccceeeeee---------------eEEEE-EeC-----------CeEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDF---------------LSKTM-YLE-----------DRTV   58 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~---~~~~~~~~~~---------------~~~~~-~~~-----------~~~~   58 (170)
                      .-.|+|+|+.|+||||++.+|.......   ........+.               ....+ ...           ...+
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~  429 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY  429 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence            4578999999999999998877521100   0000000000               00000 000           1236


Q ss_pred             EEEEEecCChhhhhhhhhh---hhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC
Q 030856           59 RLQLWDTAGQERFRSLIPS---YIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS  133 (170)
Q Consensus        59 ~~~i~D~~g~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~  133 (170)
                      .+.|+||+|..........   .+.  .....++|++.+.  +...+...+..+..    ..+.-+|+||.|..    ..
T Consensus       430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~----~~~~gvILTKlDEt----~~  499 (559)
T PRK12727        430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH----AKPQGVVLTKLDET----GR  499 (559)
T ss_pred             CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh----hCCeEEEEecCcCc----cc
Confidence            7899999995433221110   011  1234566667653  23333333333332    23456788999962    23


Q ss_pred             HHHHHHHHHhcCCeEEEee
Q 030856          134 IEEGEAKSRELNVMFIETS  152 (170)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~S  152 (170)
                      ...+.......++++..++
T Consensus       500 lG~aLsv~~~~~LPI~yvt  518 (559)
T PRK12727        500 FGSALSVVVDHQMPITWVT  518 (559)
T ss_pred             hhHHHHHHHHhCCCEEEEe
Confidence            4666777778888776664

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=98.38  E-value=1.6e-05  Score=57.13  Aligned_cols=85  Identities=11%  Similarity=0.055  Sum_probs=47.0

Q ss_pred             EEEEEEecCChhhhhhhhhhhhc--------CCcEEEEEEeCCChhhH-HhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856           58 VRLQLWDTAGQERFRSLIPSYIR--------DSSVAVVVYDVASRQSF-LNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~  128 (170)
                      ....++++.|..+.......+..        ..++++.++|+.+-... +.......++..      .-++++||+|+..
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~------AD~IvlnK~Dl~~  164 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAG  164 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh------CCEEEEeccccCC
Confidence            34678899997655554444321        24789999998753221 111111122222      1277789999875


Q ss_pred             CcccCHHHHHHHHHhcC--CeEEEee
Q 030856          129 KRQVSIEEGEAKSRELN--VMFIETS  152 (170)
Q Consensus       129 ~~~~~~~~~~~~~~~~~--~~~~~~S  152 (170)
                      +.    +..++..+..+  ++++.++
T Consensus       165 ~~----~~~~~~l~~lnp~a~i~~~~  186 (318)
T PRK11537        165 EA----EKLRERLARINARAPVYTVV  186 (318)
T ss_pred             HH----HHHHHHHHHhCCCCEEEEec
Confidence            32    44555555443  4666554

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.35  E-value=2.5e-05  Score=56.08  Aligned_cols=88  Identities=30%  Similarity=0.298  Sum_probs=50.8

Q ss_pred             EEEEEEecCChhhhhhhhhhhhc--------CCcEEEEEEeCCChhh-HHhHHHH-HHHHHHhcCCCCeEEEEEeCCCCC
Q 030856           58 VRLQLWDTAGQERFRSLIPSYIR--------DSSVAVVVYDVASRQS-FLNTSKW-IDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~~-~~~~~~~-~~~~~~~~~~~~~~vvv~nK~D~~  127 (170)
                      ....++++.|.-+-......+..        .-|+++-|+|+.+-.. ....... ..++..      .=++++||.|+.
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~Dlv  158 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTDLV  158 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEecccCC
Confidence            34677888885544333333322        3578999999876322 2222222 222222      127788999998


Q ss_pred             CCcccCHHHHHHHHHhcC--CeEEEeec
Q 030856          128 EKRQVSIEEGEAKSRELN--VMFIETSA  153 (170)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~--~~~~~~S~  153 (170)
                      +...  .+..+...+..+  .+++.+|.
T Consensus       159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~  184 (323)
T COG0523         159 DAEE--LEALEARLRKLNPRARIIETSY  184 (323)
T ss_pred             CHHH--HHHHHHHHHHhCCCCeEEEccc
Confidence            7654  345555555554  48888776

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.31  E-value=1e-05  Score=53.03  Aligned_cols=83  Identities=12%  Similarity=0.041  Sum_probs=44.9

Q ss_pred             EEEEEEEecCChhhh----hhhhhhhh--cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc
Q 030856           57 TVRLQLWDTAGQERF----RSLIPSYI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~----~~~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~  130 (170)
                      ...+.+.|++|....    ......+.  ...+.+++|++......   ...+...+....  + ..-+|.||.|.....
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~--~-~~~viltk~D~~~~~  155 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL--G-ITGVILTKLDGDARG  155 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC--C-CCEEEEECCcCCCCc
Confidence            345788999996422    11112222  24899999999865432   222333333332  2 356667999964322


Q ss_pred             ccCHHHHHHHHHhcCCeEE
Q 030856          131 QVSIEEGEAKSRELNVMFI  149 (170)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~  149 (170)
                          ..+...+...++|+.
T Consensus       156 ----g~~~~~~~~~~~p~~  170 (173)
T cd03115         156 ----GAALSIRAVTGKPIK  170 (173)
T ss_pred             ----chhhhhHHHHCcCeE
Confidence                223335666666543

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.31  E-value=1.7e-06  Score=61.40  Aligned_cols=25  Identities=28%  Similarity=0.453  Sum_probs=22.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      -.++++|++|+|||||+|.|.+...
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~  186 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLD  186 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhh
Confidence            5789999999999999999998654

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.30  E-value=2.3e-06  Score=61.02  Aligned_cols=26  Identities=23%  Similarity=0.318  Sum_probs=22.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .-.++++|++|+|||||+|+|.+...
T Consensus       164 gk~~~~~G~sgvGKStlin~l~~~~~  189 (298)
T PRK00098        164 GKVTVLAGQSGVGKSTLLNALAPDLE  189 (298)
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCcC
Confidence            34689999999999999999997644

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=98.30  E-value=6.1e-05  Score=48.68  Aligned_cols=143  Identities=9%  Similarity=0.073  Sum_probs=99.6

Q ss_pred             CCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcC
Q 030856            2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD   81 (170)
Q Consensus         2 ~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   81 (170)
                      +.++..+.-+|+++|..+.++..|.+++......          +.........  .+     .|.  +    ....=..
T Consensus         8 ~klp~ln~atiLLVg~e~~~~~~LA~a~l~~~~~----------~~l~Vh~a~s--LP-----Lp~--e----~~~lRpr   64 (176)
T PF11111_consen    8 DKLPELNTATILLVGTEEALLQQLAEAMLEEDKE----------FKLKVHLAKS--LP-----LPS--E----NNNLRPR   64 (176)
T ss_pred             ccCCCcceeEEEEecccHHHHHHHHHHHHhhccc----------eeEEEEEecc--CC-----Ccc--c----ccCCCce
Confidence            4566778899999999999999999999853210          0011100000  00     111  1    1111236


Q ss_pred             CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 030856           82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG  161 (170)
Q Consensus        82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~  161 (170)
                      .|.|+|++|.....+++.+..-+..+....-.+ .+.++++-....+...+..++..+++..++++++.+.-.+.++...
T Consensus        65 IDlIVFvinl~sk~SL~~ve~SL~~vd~~fflG-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~  143 (176)
T PF11111_consen   65 IDLIVFVINLHSKYSLQSVEASLSHVDPSFFLG-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTS  143 (176)
T ss_pred             eEEEEEEEecCCcccHHHHHHHHhhCChhhhcc-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHH
Confidence            899999999999999999888777765544333 3556667777677788999999999999999999998888877776


Q ss_pred             HHHHHHh
Q 030856          162 CSPTIRR  168 (170)
Q Consensus       162 ~~~~l~~  168 (170)
                      +-+.|.+
T Consensus       144 lAqRLL~  150 (176)
T PF11111_consen  144 LAQRLLR  150 (176)
T ss_pred             HHHHHHH
Confidence            6666654

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=98.29  E-value=1e-06  Score=58.18  Aligned_cols=81  Identities=25%  Similarity=0.202  Sum_probs=42.0

Q ss_pred             EEEEEEecCChhhhhhh---hhh--hhcCCcEEEEEEeCCChhhHHhHHHH-HHHHHHhcCCCCeEEEEEeCCCCCCCcc
Q 030856           58 VRLQLWDTAGQERFRSL---IPS--YIRDSSVAVVVYDVASRQSFLNTSKW-IDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~---~~~--~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~vvv~nK~D~~~~~~  131 (170)
                      ....++++.|..+....   ...  ..-..+.+|.++|+.+-......... ..++..      .=++++||+|+.+.. 
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~------ADvIvlnK~D~~~~~-  157 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF------ADVIVLNKIDLVSDE-  157 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHHH-
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh------cCEEEEeccccCChh-
Confidence            45678899885544443   011  12356899999998764333333222 222322      127778999986544 


Q ss_pred             cCHHHHHHHHHhcC
Q 030856          132 VSIEEGEAKSRELN  145 (170)
Q Consensus       132 ~~~~~~~~~~~~~~  145 (170)
                      ...+..++..+..+
T Consensus       158 ~~i~~~~~~ir~ln  171 (178)
T PF02492_consen  158 QKIERVREMIRELN  171 (178)
T ss_dssp             --HHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHHC
Confidence            12244555555443

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.26  E-value=1.6e-05  Score=59.35  Aligned_cols=136  Identities=15%  Similarity=0.146  Sum_probs=72.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCC----C-----C-CCccce-----------eeeeeeEEEEEe-----------CC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDK----F-----D-NTYQAT-----------IGIDFLSKTMYL-----------ED   55 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~----~-----~-~~~~~~-----------~~~~~~~~~~~~-----------~~   55 (170)
                      ++..|+++|++|+||||.+.++...-    .     . +.+.+.           .+..+.......           ..
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~  173 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF  173 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence            46789999999999999988776321    1     0 111110           011111110000           00


Q ss_pred             eEEEEEEEecCChhhhhhhh----hh--hhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 030856           56 RTVRLQLWDTAGQERFRSLI----PS--YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK  129 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~----~~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~  129 (170)
                      ....+.|+||+|........    ..  .+..+|.+++|+|++...   ........+....  + ..-+|.||.|... 
T Consensus       174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l--~-i~gvIlTKlD~~a-  246 (437)
T PRK00771        174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV--G-IGGIIITKLDGTA-  246 (437)
T ss_pred             hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC--C-CCEEEEecccCCC-
Confidence            12378999999965432211    11  133688999999987532   1112222222211  1 2356679999532 


Q ss_pred             cccCHHHHHHHHHhcCCeEEEeec
Q 030856          130 RQVSIEEGEAKSRELNVMFIETSA  153 (170)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~S~  153 (170)
                         ..-.+...+...+.|+..++.
T Consensus       247 ---~~G~~ls~~~~~~~Pi~fig~  267 (437)
T PRK00771        247 ---KGGGALSAVAETGAPIKFIGT  267 (437)
T ss_pred             ---cccHHHHHHHHHCcCEEEEec
Confidence               235566677777887766654

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.26  E-value=9.3e-06  Score=57.12  Aligned_cols=94  Identities=16%  Similarity=0.204  Sum_probs=67.6

Q ss_pred             hhhhhhhcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEe
Q 030856           73 SLIPSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIET  151 (170)
Q Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (170)
                      .+.+.-..+.|-.++++.+.+|+ +...+..++.....   .++..++++||+|+.+......++........|.+++.+
T Consensus        71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~  147 (301)
T COG1162          71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFV  147 (301)
T ss_pred             ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEe
Confidence            34444455788899999988875 34445555443332   467777889999997655443345566677789999999


Q ss_pred             ecCCCCChHHHHHHHHhh
Q 030856          152 SAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       152 S~~~~~~v~~~~~~l~~~  169 (170)
                      |++++++++++.+++...
T Consensus       148 s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         148 SAKNGDGLEELAELLAGK  165 (301)
T ss_pred             cCcCcccHHHHHHHhcCC
Confidence            999999999999888643

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.25  E-value=1.2e-06  Score=65.03  Aligned_cols=54  Identities=22%  Similarity=0.201  Sum_probs=40.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   67 (170)
                      .+.|++||-|||||||+||+|.+++.- .+..|..+.+++...+.     -.+.+.|+||
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls-----~~v~LCDCPG  368 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS-----PSVCLCDCPG  368 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC-----CCceecCCCC
Confidence            599999999999999999999998663 34445555455444432     1467889999

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.23  E-value=2.4e-06  Score=57.15  Aligned_cols=84  Identities=14%  Similarity=0.055  Sum_probs=47.7

Q ss_pred             EEEEEEecCChhhhhhh----hhhh--hcCCcEEEEEEeCCCh-hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc
Q 030856           58 VRLQLWDTAGQERFRSL----IPSY--IRDSSVAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~  130 (170)
                      +.+.++||+|.......    ...+  ....+-+++|.+++.. +.++....    .....+  . --++.||.|...  
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~----~~~~~~--~-~~lIlTKlDet~--  154 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALA----FYEAFG--I-DGLILTKLDETA--  154 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHH----HHHHSS--T-CEEEEESTTSSS--
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHH----Hhhccc--C-ceEEEEeecCCC--
Confidence            45899999995543221    1111  1257789999998753 22332222    222221  2 244469999632  


Q ss_pred             ccCHHHHHHHHHhcCCeEEEee
Q 030856          131 QVSIEEGEAKSRELNVMFIETS  152 (170)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~S  152 (170)
                        ..-.+...+...+.|+-.+|
T Consensus       155 --~~G~~l~~~~~~~~Pi~~it  174 (196)
T PF00448_consen  155 --RLGALLSLAYESGLPISYIT  174 (196)
T ss_dssp             --TTHHHHHHHHHHTSEEEEEE
T ss_pred             --CcccceeHHHHhCCCeEEEE
Confidence              33556777888888776665

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=98.22  E-value=8.2e-06  Score=42.68  Aligned_cols=45  Identities=16%  Similarity=0.193  Sum_probs=31.0

Q ss_pred             cCCcEEEEEEeCCCh--hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 030856           80 RDSSVAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTD  125 (170)
Q Consensus        80 ~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D  125 (170)
                      .-.++++|++|.+..  .+.+.....+..++... .+.|+++|.||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence            347899999999964  45677777788888876 4899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.21  E-value=6.6e-06  Score=52.60  Aligned_cols=58  Identities=16%  Similarity=0.157  Sum_probs=35.2

Q ss_pred             EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 030856           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD  125 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D  125 (170)
                      .+.+.++||+|...   ....++..+|-++++....-.+.+..++.  ..+      ...-++++||.|
T Consensus        91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~------~~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAIKA--GIM------EIADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHhhh--hHh------hhcCEEEEeCCC
Confidence            45789999988542   22347888998888888662233222221  111      122367779987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=98.17  E-value=1.3e-05  Score=50.70  Aligned_cols=106  Identities=15%  Similarity=0.114  Sum_probs=61.4

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCC
Q 030856           14 FLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS   93 (170)
Q Consensus        14 i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~   93 (170)
                      .-|.+|+|||++--.+...-... ..+..-.+.-   .......+.+.++|+|+..  .......+..+|.++++.+.+ 
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~~~-~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-   77 (139)
T cd02038           5 TSGKGGVGKTNISANLALALAKL-GKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-   77 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-
Confidence            44789999999966554321110 0011100100   0001111678999999753  333456788999999999976 


Q ss_pred             hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856           94 RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~  127 (170)
                      +.++......++.+.... ...++.+|+|+.+..
T Consensus        78 ~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~  110 (139)
T cd02038          78 PTSITDAYALIKKLAKQL-RVLNFRVVVNRAESP  110 (139)
T ss_pred             hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence            445555555555554433 345677889999743

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.16  E-value=3e-05  Score=57.53  Aligned_cols=138  Identities=14%  Similarity=0.108  Sum_probs=71.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCC---CCccceeeeeeeE---------------EEE-Ee-----------CCeEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLS---------------KTM-YL-----------EDRTV   58 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~---~~~~~~~~~~~~~---------------~~~-~~-----------~~~~~   58 (170)
                      .-.++++|+.|+||||++.+|.+....   .........+...               ... ..           .-...
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~  270 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK  270 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence            458999999999999999988753110   0000000000000               000 00           01124


Q ss_pred             EEEEEecCChhhhhh----hhhhhh--cCCcEEEEEEeCCC-hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc
Q 030856           59 RLQLWDTAGQERFRS----LIPSYI--RDSSVAVVVYDVAS-RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        59 ~~~i~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~  131 (170)
                      .+.++||+|......    ....+.  ....-.++|.|++. ...+..+.   .....    --+-=+++||.|...   
T Consensus       271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~---~~f~~----~~~~~~I~TKlDEt~---  340 (420)
T PRK14721        271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVI---SAYQG----HGIHGCIITKVDEAA---  340 (420)
T ss_pred             CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHH---HHhcC----CCCCEEEEEeeeCCC---
Confidence            678999999554222    222221  12346778888873 33333322   22211    122345569999632   


Q ss_pred             cCHHHHHHHHHhcCCeEEEeecCCCCCh
Q 030856          132 VSIEEGEAKSRELNVMFIETSAKAGFNI  159 (170)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~S~~~~~~v  159 (170)
                       ..-.+...+...++++..++  +|.++
T Consensus       341 -~~G~~l~~~~~~~lPi~yvt--~Gq~V  365 (420)
T PRK14721        341 -SLGIALDAVIRRKLVLHYVT--NGQKV  365 (420)
T ss_pred             -CccHHHHHHHHhCCCEEEEE--CCCCc
Confidence             34556667777788776664  44444

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.16  E-value=3.5e-05  Score=60.97  Aligned_cols=140  Identities=16%  Similarity=0.125  Sum_probs=72.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC--CC-ccceeeeeeeE---------------EEE-Ee-----------CCeEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFD--NT-YQATIGIDFLS---------------KTM-YL-----------EDRTVR   59 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~--~~-~~~~~~~~~~~---------------~~~-~~-----------~~~~~~   59 (170)
                      --++++|+.|+||||.+.+|......  .. .....+.+.+.               ... ..           .-..+.
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D  265 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH  265 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence            46799999999999999998854311  00 00011111100               000 00           012346


Q ss_pred             EEEEecCChhhhhh----hhhhh--hcCCcEEEEEEeCCC-hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc
Q 030856           60 LQLWDTAGQERFRS----LIPSY--IRDSSVAVVVYDVAS-RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV  132 (170)
Q Consensus        60 ~~i~D~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~  132 (170)
                      +.++||+|......    .....  ....+-.++|.|.+. .+.+..+...+.   .....+ +-=+|+||.|...    
T Consensus       266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~---~~~~~~-i~glIlTKLDEt~----  337 (767)
T PRK14723        266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYR---HGAGED-VDGCIITKLDEAT----  337 (767)
T ss_pred             EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHh---hcccCC-CCEEEEeccCCCC----
Confidence            89999999433221    11111  123456788888874 333443333222   211111 2345679999632    


Q ss_pred             CHHHHHHHHHhcCCeEEEeecCCCCCh
Q 030856          133 SIEEGEAKSRELNVMFIETSAKAGFNI  159 (170)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~S~~~~~~v  159 (170)
                      ..-.+.......++|+..++  +|++|
T Consensus       338 ~~G~iL~i~~~~~lPI~yit--~GQ~V  362 (767)
T PRK14723        338 HLGPALDTVIRHRLPVHYVS--TGQKV  362 (767)
T ss_pred             CccHHHHHHHHHCCCeEEEe--cCCCC
Confidence            33556667777788776664  44555

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.15  E-value=6.5e-05  Score=54.97  Aligned_cols=134  Identities=18%  Similarity=0.162  Sum_probs=73.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC--C-CCccceeeeeeeEE-----------------EEEe----------CCeE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKF--D-NTYQATIGIDFLSK-----------------TMYL----------EDRT   57 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~--~-~~~~~~~~~~~~~~-----------------~~~~----------~~~~   57 (170)
                      +.-.|+++||.||||||-+-+|.....  . .....-.+.|.+..                 ....          .-..
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~  281 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD  281 (407)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence            356789999999999999988876544  1 11111122221111                 0000          0123


Q ss_pred             EEEEEEecCChhhhhhh----hhhhhcC--CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc
Q 030856           58 VRLQLWDTAGQERFRSL----IPSYIRD--SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~----~~~~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~  131 (170)
                      +.+.++||.|...+...    ...++..  ..-..+|++++..  .+.++..+..+...   ++ --++.||.|..    
T Consensus       282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~---~i-~~~I~TKlDET----  351 (407)
T COG1419         282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF---PI-DGLIFTKLDET----  351 (407)
T ss_pred             CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC---Cc-ceeEEEccccc----
Confidence            57999999996654332    3334333  3455667777632  44555544444321   11 24455999953    


Q ss_pred             cCHHHHHHHHHhcCCeEEEe
Q 030856          132 VSIEEGEAKSRELNVMFIET  151 (170)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~  151 (170)
                      ......-..+...+.|+-.+
T Consensus       352 ~s~G~~~s~~~e~~~PV~Yv  371 (407)
T COG1419         352 TSLGNLFSLMYETRLPVSYV  371 (407)
T ss_pred             CchhHHHHHHHHhCCCeEEE
Confidence            23455666666666665554

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=98.15  E-value=3.7e-06  Score=60.92  Aligned_cols=155  Identities=17%  Similarity=0.197  Sum_probs=91.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCC------------------CC-------------CccceeeeeeeEEEEEeC
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF------------------DN-------------TYQATIGIDFLSKTMYLE   54 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~------------------~~-------------~~~~~~~~~~~~~~~~~~   54 (170)
                      +...+++.++|.-.+||||+-..+.....                  ..             +....-+.......+  .
T Consensus        76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~F--E  153 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYF--E  153 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEE--E
Confidence            45679999999999999998665442100                  00             000001111112222  2


Q ss_pred             CeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCCh---hhHHhH--HHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 030856           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR---QSFLNT--SKWIDEVRTERGSDVIIVLVGNKTDLVEK  129 (170)
Q Consensus        55 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~~~~~~--~~~~~~~~~~~~~~~~~vvv~nK~D~~~~  129 (170)
                      -...++++.|+||+..|-.....-..++|+-++|+++-..   ..|+.-  ......+.+.. .-...++++||+|-..-
T Consensus       154 te~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~-gv~~lVv~vNKMddPtv  232 (501)
T KOG0459|consen  154 TENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GVKHLIVLINKMDDPTV  232 (501)
T ss_pred             ecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh-ccceEEEEEEeccCCcc
Confidence            2335789999999988877777777889999999887432   223332  22223333333 23456777899996431


Q ss_pred             c--ccC----HHHHHHHHHhc------CCeEEEeecCCCCChHHHH
Q 030856          130 R--QVS----IEEGEAKSREL------NVMFIETSAKAGFNIKGCS  163 (170)
Q Consensus       130 ~--~~~----~~~~~~~~~~~------~~~~~~~S~~~~~~v~~~~  163 (170)
                      .  ..-    .+....+.+..      ...|++||..+|.++.+..
T Consensus       233 nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~  278 (501)
T KOG0459|consen  233 NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT  278 (501)
T ss_pred             CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence            1  111    23333344432      2479999999999988753

>TIGR00959 ffh signal recognition particle protein

Probab=98.12  E-value=5.1e-05  Score=56.62  Aligned_cols=87  Identities=13%  Similarity=0.031  Sum_probs=49.5

Q ss_pred             EEEEEEEecCChhhhhhh-hh---hh--hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc
Q 030856           57 TVRLQLWDTAGQERFRSL-IP---SY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~-~~---~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~  130 (170)
                      .+.+.|+||+|....... ..   .+  .-..+.+++|+|.+...   ........+....  + ..-+|.||.|...  
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v--~-i~giIlTKlD~~~--  253 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL--G-LTGVVLTKLDGDA--  253 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC--C-CCEEEEeCccCcc--
Confidence            356899999995432221 11   11  23578899999987432   2222323333222  1 2355679999532  


Q ss_pred             ccCHHHHHHHHHhcCCeEEEeec
Q 030856          131 QVSIEEGEAKSRELNVMFIETSA  153 (170)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~S~  153 (170)
                        ....+...+...++|+..++.
T Consensus       254 --~~G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       254 --RGGAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             --cccHHHHHHHHHCcCEEEEeC
Confidence              223367777778887776654

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK10867 signal recognition particle protein; Provisional

Probab=98.12  E-value=4e-05  Score=57.20  Aligned_cols=86  Identities=10%  Similarity=0.010  Sum_probs=47.6

Q ss_pred             EEEEEEecCChhhhhhh----hhhh--hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc
Q 030856           58 VRLQLWDTAGQERFRSL----IPSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~  131 (170)
                      +.+.|+||+|.......    ...+  .-..+.+++|.|....   +........+....  + ..-+|.||.|-.. + 
T Consensus       184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~--~-i~giIlTKlD~~~-r-  255 (433)
T PRK10867        184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL--G-LTGVILTKLDGDA-R-  255 (433)
T ss_pred             CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC--C-CCEEEEeCccCcc-c-
Confidence            56899999995432111    1111  1256788999997643   22222222333221  1 2355669999532 1 


Q ss_pred             cCHHHHHHHHHhcCCeEEEeec
Q 030856          132 VSIEEGEAKSRELNVMFIETSA  153 (170)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~S~  153 (170)
                        .-.+...+...++|+..++.
T Consensus       256 --gG~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        256 --GGAALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             --ccHHHHHHHHHCcCEEEEeC
Confidence              23366677777887766654

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.11  E-value=5.8e-05  Score=56.98  Aligned_cols=138  Identities=14%  Similarity=0.113  Sum_probs=70.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCC--C-ccceeeeeee---------------EEEE-Ee-----------CCeEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDN--T-YQATIGIDFL---------------SKTM-YL-----------EDRTVR   59 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~--~-~~~~~~~~~~---------------~~~~-~~-----------~~~~~~   59 (170)
                      --++++|+.|+||||++.+|.......  . .......+.+               .... ..           .-....
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d  336 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH  336 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence            458999999999999999988532110  0 0001111110               0000 00           001235


Q ss_pred             EEEEecCChhhhhhh---hhhhhcC---CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC
Q 030856           60 LQLWDTAGQERFRSL---IPSYIRD---SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS  133 (170)
Q Consensus        60 ~~i~D~~g~~~~~~~---~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~  133 (170)
                      ..++||+|.......   ....+..   ..-.++|+|.+..  ...+........    ....--+|+||.|..    ..
T Consensus       337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~--~~~l~~i~~~f~----~~~~~g~IlTKlDet----~~  406 (484)
T PRK06995        337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH--GDTLNEVVQAYR----GPGLAGCILTKLDEA----AS  406 (484)
T ss_pred             eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc--HHHHHHHHHHhc----cCCCCEEEEeCCCCc----cc
Confidence            789999994432211   1111221   1236778887632  222222222221    122345567999953    23


Q ss_pred             HHHHHHHHHhcCCeEEEeecCCCCCh
Q 030856          134 IEEGEAKSRELNVMFIETSAKAGFNI  159 (170)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~S~~~~~~v  159 (170)
                      ...+...+...++++..++  +|++|
T Consensus       407 ~G~~l~i~~~~~lPI~yvt--~GQ~V  430 (484)
T PRK06995        407 LGGALDVVIRYKLPLHYVS--NGQRV  430 (484)
T ss_pred             chHHHHHHHHHCCCeEEEe--cCCCC
Confidence            4566777888888777664  45555

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.09  E-value=2.6e-05  Score=57.17  Aligned_cols=134  Identities=17%  Similarity=0.162  Sum_probs=70.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCC---------CCCccc------------eeeeeeeEEEE--E----e---C-CeE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKF---------DNTYQA------------TIGIDFLSKTM--Y----L---E-DRT   57 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~---------~~~~~~------------~~~~~~~~~~~--~----~---~-~~~   57 (170)
                      +..|+++|++|+||||++.+|.....         ..+..+            ..+..+.....  .    +   . ...
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~  320 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR  320 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence            46899999999999999999864211         000000            00111110000  0    0   0 012


Q ss_pred             EEEEEEecCChhhhhh----hhhhhhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc
Q 030856           58 VRLQLWDTAGQERFRS----LIPSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~  131 (170)
                      +.+.|+||+|......    .....+.  ..+.+++|.|++-.  ...+...+..+..    --+--+++||.|...   
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~----~~idglI~TKLDET~---  391 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD----IHIDGIVFTKFDETA---  391 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC----CCCCEEEEEcccCCC---
Confidence            5789999999643221    1222222  35678888887522  2232333333322    122345569999643   


Q ss_pred             cCHHHHHHHHHhcCCeEEEee
Q 030856          132 VSIEEGEAKSRELNVMFIETS  152 (170)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~S  152 (170)
                       ..-.+...+...++|+..++
T Consensus       392 -k~G~iLni~~~~~lPIsyit  411 (436)
T PRK11889        392 -SSGELLKIPAVSSAPIVLMT  411 (436)
T ss_pred             -CccHHHHHHHHHCcCEEEEe
Confidence             34556667777788766664

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.08  E-value=7.8e-05  Score=55.75  Aligned_cols=90  Identities=14%  Similarity=0.108  Sum_probs=49.5

Q ss_pred             EEEEEEecCChhhhh----hhhhhhhc---CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc
Q 030856           58 VRLQLWDTAGQERFR----SLIPSYIR---DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~  130 (170)
                      +.+.++||+|.....    .....++.   ...-..+|++++-.  ...+...+..+..   -+ +--++.||.|...  
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~---~~-~~~vI~TKlDet~--  371 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSR---LP-LDGLIFTKLDETS--  371 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCC---CC-CCEEEEecccccc--
Confidence            578999999964332    12233333   23466777887632  2233332222221   11 1246679999632  


Q ss_pred             ccCHHHHHHHHHhcCCeEEEeecCCCCCh
Q 030856          131 QVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (170)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~v  159 (170)
                        ....+...+...++++..++  +|.++
T Consensus       372 --~~G~i~~~~~~~~lPv~yit--~Gq~V  396 (424)
T PRK05703        372 --SLGSILSLLIESGLPISYLT--NGQRV  396 (424)
T ss_pred             --cccHHHHHHHHHCCCEEEEe--CCCCC
Confidence              23457777888888777664  34443

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=98.07  E-value=1.1e-05  Score=56.75  Aligned_cols=60  Identities=20%  Similarity=0.294  Sum_probs=38.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCC------CCccceeeeeeeEEEEEeCCeEEEEEEEecCCh
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   68 (170)
                      ..++++.++|.||+|||||+|++......      ....|..+..+..... +... -.+.+.||||.
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~ir-i~~r-p~vy~iDTPGi  206 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIR-ISHR-PPVYLIDTPGI  206 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheE-eccC-CceEEecCCCc
Confidence            45789999999999999999988753221      2223334433333222 2222 24789999993

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=98.06  E-value=6.4e-05  Score=44.96  Aligned_cols=82  Identities=11%  Similarity=0.118  Sum_probs=50.0

Q ss_pred             EEEEc-CCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEe
Q 030856           12 LVFLG-DQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (170)
Q Consensus        12 i~i~G-~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   90 (170)
                      |++.| ..|+||||+...+........ .+..-     ..  .+ ..+.+.++|+|+....  .....+..+|.++++.+
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~~-~~vl~-----~d--~d-~~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARRG-KRVLL-----ID--LD-PQYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhCC-CcEEE-----Ee--CC-CCCCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence            56776 669999999776654322111 11111     11  11 1167899999986532  23366778999999998


Q ss_pred             CCChhhHHhHHHHHH
Q 030856           91 VASRQSFLNTSKWID  105 (170)
Q Consensus        91 ~~~~~~~~~~~~~~~  105 (170)
                      .+ ..++.....+++
T Consensus        71 ~~-~~s~~~~~~~~~   84 (104)
T cd02042          71 PS-PLDLDGLEKLLE   84 (104)
T ss_pred             CC-HHHHHHHHHHHH
Confidence            75 456666665555

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.02  E-value=9.8e-05  Score=54.01  Aligned_cols=136  Identities=15%  Similarity=0.201  Sum_probs=70.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC---------CCCccce------------eeeeeeEEEE--Ee-------C-Ce
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKF---------DNTYQAT------------IGIDFLSKTM--YL-------E-DR   56 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~---------~~~~~~~------------~~~~~~~~~~--~~-------~-~~   56 (170)
                      +.-.++++|+.|+||||++.++.....         ..+..+.            .+..+.....  ..       . ..
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~  284 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN  284 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence            345689999999999999988774211         0010000            1111110000  00       0 02


Q ss_pred             EEEEEEEecCChhhhhh----hhhhhhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc
Q 030856           57 TVRLQLWDTAGQERFRS----LIPSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~  130 (170)
                      .+.+.++||+|......    ....+..  ..+.+++|.+.+.  ....+...+...    ..--+--+|.||.|..   
T Consensus       285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f----~~l~i~glI~TKLDET---  355 (407)
T PRK12726        285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKL----AEIPIDGFIITKMDET---  355 (407)
T ss_pred             CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhc----CcCCCCEEEEEcccCC---
Confidence            35789999999743322    1222222  3466677776542  223333322221    1112335567999963   


Q ss_pred             ccCHHHHHHHHHhcCCeEEEeec
Q 030856          131 QVSIEEGEAKSRELNVMFIETSA  153 (170)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~S~  153 (170)
                       ...-.+...+...++|+..+|.
T Consensus       356 -~~~G~~Lsv~~~tglPIsylt~  377 (407)
T PRK12726        356 -TRIGDLYTVMQETNLPVLYMTD  377 (407)
T ss_pred             -CCccHHHHHHHHHCCCEEEEec
Confidence             2345667778888887766653

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=98.00  E-value=0.00011  Score=42.97  Aligned_cols=96  Identities=16%  Similarity=0.136  Sum_probs=54.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh-hhhhhcCCcEEEEEEe
Q 030856           12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-IPSYIRDSSVAVVVYD   90 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~d~~i~v~d   90 (170)
                      +++.|.+|+||||+...+...-.... .+..-         .+    .+.++|+++....... .......+|.++++.+
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g-~~v~~---------~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRG-KRVLL---------ID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCC-CeEEE---------EC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            67889999999999888775432111 11111         11    6889999986532221 1455668899999998


Q ss_pred             CCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEe
Q 030856           91 VASRQSFLNTSKWIDEVRTER-GSDVIIVLVGN  122 (170)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~n  122 (170)
                      ... .++.............. ....+..++.|
T Consensus        68 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vv~N   99 (99)
T cd01983          68 PEA-LAVLGARRLTEVVLELAIEGLRPVGVVVN   99 (99)
T ss_pred             Cch-hhHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence            764 33334333322222222 23445555544

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.99  E-value=4.9e-05  Score=56.98  Aligned_cols=126  Identities=22%  Similarity=0.222  Sum_probs=77.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC------------CCC--ccceeeeeeeEEEEE----------------eCCeE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKF------------DNT--YQATIGIDFLSKTMY----------------LEDRT   57 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~------------~~~--~~~~~~~~~~~~~~~----------------~~~~~   57 (170)
                      +-.++.++.....|||||-..|..+..            .+.  .....+++.....+.                .++..
T Consensus        18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~   97 (842)
T KOG0469|consen   18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG   97 (842)
T ss_pred             ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence            446778899999999999998874311            100  001111111111111                13446


Q ss_pred             EEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC-CCcccCHHH
Q 030856           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV-EKRQVSIEE  136 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~-~~~~~~~~~  136 (170)
                      +-+.++|.||+-++++.....++-.|+.+.|+|+.+.--.+.-...    ++..++.+.-++++||.|.. -+-++..++
T Consensus        98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVL----rQA~~ERIkPvlv~NK~DRAlLELq~~~Ee  173 (842)
T KOG0469|consen   98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVL----RQAIAERIKPVLVMNKMDRALLELQLSQEE  173 (842)
T ss_pred             eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHH----HHHHHhhccceEEeehhhHHHHhhcCCHHH
Confidence            7899999999999999999999999999999998764322222222    22223345556778999964 123444444


Q ss_pred             H
Q 030856          137 G  137 (170)
Q Consensus       137 ~  137 (170)
                      .
T Consensus       174 L  174 (842)
T KOG0469|consen  174 L  174 (842)
T ss_pred             H
Confidence            3

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.99  E-value=5e-05  Score=50.68  Aligned_cols=109  Identities=14%  Similarity=0.135  Sum_probs=57.7

Q ss_pred             EEEEEecCChhhhhh-------hhhhhhcC--C-cEEEEEEeCCC-hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856           59 RLQLWDTAGQERFRS-------LIPSYIRD--S-SVAVVVYDVAS-RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        59 ~~~i~D~~g~~~~~~-------~~~~~~~~--~-d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~  127 (170)
                      ...++|.||+-+...       ..++ ++.  - =.++++.+..= -++...+...+..+.....-.+|-+=|++|+|+.
T Consensus        99 dylifDcPGQIELytH~pVm~~iv~h-l~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLl  177 (273)
T KOG1534|consen   99 DYLIFDCPGQIELYTHLPVMPQIVEH-LKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLL  177 (273)
T ss_pred             CEEEEeCCCeeEEeecChhHHHHHHH-HhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHh
Confidence            467899999765322       1111 121  1 13445555321 1222333333444444334578888888999986


Q ss_pred             CCcc--------------------cC---------HHHHHHHHHhcCC-eEEEeecCCCCChHHHHHHHHh
Q 030856          128 EKRQ--------------------VS---------IEEGEAKSRELNV-MFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus       128 ~~~~--------------------~~---------~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ..+.                    ..         ......+...++. .|++..+.+.++++.++..|-.
T Consensus       178 k~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~  248 (273)
T KOG1534|consen  178 KDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDD  248 (273)
T ss_pred             hhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHH
Confidence            4310                    00         0111122223444 7888888888888888877643

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.99  E-value=8.1e-06  Score=43.76  Aligned_cols=23  Identities=13%  Similarity=0.225  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      ..+|.|+.|+|||||++++..--
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999987543

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.98  E-value=0.00013  Score=54.07  Aligned_cols=134  Identities=20%  Similarity=0.201  Sum_probs=68.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCC-C-C--------Cccc------------eeeeeeeEEE------EEeCCeEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKF-D-N--------TYQA------------TIGIDFLSKT------MYLEDRTVRL   60 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~-~-~--------~~~~------------~~~~~~~~~~------~~~~~~~~~~   60 (170)
                      ..-++++|++|+||||++.+|..... . .        +..+            ..+.......      .......+.+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence            45688999999999999998874210 0 0        0000            0111111000      0001124578


Q ss_pred             EEEecCChhhhhh----hhhhhhc-----CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc
Q 030856           61 QLWDTAGQERFRS----LIPSYIR-----DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        61 ~i~D~~g~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~  131 (170)
                      .++||+|......    ....++.     ...-.++|.|++..  .+.+........ .   --+--+|.||.|-..   
T Consensus       303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f~-~---~~~~glIlTKLDEt~---  373 (432)
T PRK12724        303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKAYE-S---LNYRRILLTKLDEAD---  373 (432)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHHHHHHHHHhc-C---CCCCEEEEEcccCCC---
Confidence            9999999643211    1222222     13467888888743  222222222221 1   122345569999632   


Q ss_pred             cCHHHHHHHHHhcCCeEEEee
Q 030856          132 VSIEEGEAKSRELNVMFIETS  152 (170)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~S  152 (170)
                       ..-.+...+...+.|+..++
T Consensus       374 -~~G~il~i~~~~~lPI~ylt  393 (432)
T PRK12724        374 -FLGSFLELADTYSKSFTYLS  393 (432)
T ss_pred             -CccHHHHHHHHHCCCEEEEe
Confidence             23446667777788766664

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.97  E-value=7.3e-06  Score=59.29  Aligned_cols=57  Identities=19%  Similarity=0.284  Sum_probs=40.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCCh
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   68 (170)
                      .+.++++|+|-|++||||+||+|...... ....|+.+...+...  .+.   .+.+.|.||.
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~--Ldk---~i~llDsPgi  307 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVK--LDK---KIRLLDSPGI  307 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhhee--ccC---CceeccCCce
Confidence            56799999999999999999999987763 333444443222222  222   5788999993

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.97  E-value=0.00013  Score=45.91  Aligned_cols=26  Identities=23%  Similarity=0.431  Sum_probs=22.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      ...+.+.|++|+|||++++.+.....
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            45789999999999999999986643

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.96  E-value=0.00031  Score=51.87  Aligned_cols=140  Identities=13%  Similarity=0.091  Sum_probs=73.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-----CCccce--------------------eeeeeeEEEEE-------eCC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-----NTYQAT--------------------IGIDFLSKTMY-------LED   55 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-----~~~~~~--------------------~~~~~~~~~~~-------~~~   55 (170)
                      .+-.|+++|++|+||||.+.++......     ......                    .+..+......       -..
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~  252 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS  252 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence            3467899999999999999887642110     000000                    11111110000       001


Q ss_pred             eEEEEEEEecCChhhhhh----hhhhhhcCC--c-EEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856           56 RTVRLQLWDTAGQERFRS----LIPSYIRDS--S-VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~----~~~~~~~~~--d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~  128 (170)
                      ..+.+.++||+|......    ....++...  + -.++|.|++..  ...+...+....   . --+-=+++||.|...
T Consensus       253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~---~-~~~~~~I~TKlDet~  326 (388)
T PRK12723        253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFS---P-FSYKTVIFTKLDETT  326 (388)
T ss_pred             CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhc---C-CCCCEEEEEeccCCC
Confidence            235789999999554221    122233322  3 57889998753  233333322221   1 112345569999532


Q ss_pred             CcccCHHHHHHHHHhcCCeEEEeecCCCCCh
Q 030856          129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (170)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v  159 (170)
                          ..-.+...+...+.|+..++  +|+++
T Consensus       327 ----~~G~~l~~~~~~~~Pi~yit--~Gq~v  351 (388)
T PRK12723        327 ----CVGNLISLIYEMRKEVSYVT--DGQIV  351 (388)
T ss_pred             ----cchHHHHHHHHHCCCEEEEe--CCCCC
Confidence                33556666777777766553  44555

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.95  E-value=8.8e-06  Score=50.07  Aligned_cols=22  Identities=14%  Similarity=0.332  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999864

...

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.91  E-value=8.5e-06  Score=59.09  Aligned_cols=85  Identities=21%  Similarity=0.131  Sum_probs=52.2

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCC-ccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh--hhhhhhhcC
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR--SLIPSYIRD   81 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~~~~~~~~   81 (170)
                      .+.+.+.|+++|.|++||||+||.|...+.... ..+..+   ..++.  ---..++.++|+||.-...  +.....+  
T Consensus       303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGET---KVWQY--ItLmkrIfLIDcPGvVyps~dset~ivL--  375 (572)
T KOG2423|consen  303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGET---KVWQY--ITLMKRIFLIDCPGVVYPSSDSETDIVL--  375 (572)
T ss_pred             cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcc---hHHHH--HHHHhceeEecCCCccCCCCCchHHHHh--
Confidence            356789999999999999999999998876532 222211   11111  0012368899999954322  2222232  


Q ss_pred             CcEEEEEEeCCChhhH
Q 030856           82 SSVAVVVYDVASRQSF   97 (170)
Q Consensus        82 ~d~~i~v~d~~~~~~~   97 (170)
                       -+++-|=.+.+|+.+
T Consensus       376 -kGvVRVenv~~pe~y  390 (572)
T KOG2423|consen  376 -KGVVRVENVKNPEDY  390 (572)
T ss_pred             -hceeeeeecCCHHHH
Confidence             356667777776543

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.91  E-value=5.2e-05  Score=54.98  Aligned_cols=92  Identities=17%  Similarity=0.237  Sum_probs=51.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccc---------------------eeeeeeeEEEEE-------------e
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA---------------------TIGIDFLSKTMY-------------L   53 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~---------------------~~~~~~~~~~~~-------------~   53 (170)
                      ++--|.++|-.|+||||.+-++........+.+                     ...+.++.....             .
T Consensus       100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f  179 (483)
T KOG0780|consen  100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF  179 (483)
T ss_pred             CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence            445678999999999999887764211111000                     011112211110             1


Q ss_pred             CCeEEEEEEEecCChhhhhhhhhhh------hcCCcEEEEEEeCCChhhHHh
Q 030856           54 EDRTVRLQLWDTAGQERFRSLIPSY------IRDSSVAVVVYDVASRQSFLN   99 (170)
Q Consensus        54 ~~~~~~~~i~D~~g~~~~~~~~~~~------~~~~d~~i~v~d~~~~~~~~~   99 (170)
                      ....+.+.|.||+|........-..      .-+.|-+|||.|++-...-+.
T Consensus       180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~  231 (483)
T KOG0780|consen  180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEA  231 (483)
T ss_pred             HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHH
Confidence            2345789999999965432221111      235799999999886544333

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.90  E-value=0.00033  Score=46.17  Aligned_cols=25  Identities=16%  Similarity=0.213  Sum_probs=21.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      =.++++|+.|+|||||++.+.+-..
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~~   50 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQLI   50 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCC
Confidence            4689999999999999999887643

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK07261 topology modulation protein; Provisional

Probab=97.89  E-value=1.1e-05  Score=52.85  Aligned_cols=23  Identities=17%  Similarity=0.431  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .+|+|+|++|+|||||.+.+...
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            37999999999999999998754

>PRK08118 topology modulation protein; Reviewed

Probab=97.89  E-value=1.2e-05  Score=52.47  Aligned_cols=23  Identities=17%  Similarity=0.431  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .+|+|+|++|||||||.+.|...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999988854

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.85  E-value=0.0001  Score=46.09  Aligned_cols=25  Identities=20%  Similarity=0.385  Sum_probs=21.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      .--|++.|+.|+|||||++.+...-
T Consensus        22 ~~~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        22 GTVVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            3468899999999999999998764

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.85  E-value=1.5e-05  Score=52.56  Aligned_cols=23  Identities=17%  Similarity=0.517  Sum_probs=21.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ++|+|+|+||+||||+.++|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999876

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.85  E-value=0.00016  Score=43.55  Aligned_cols=103  Identities=15%  Similarity=0.126  Sum_probs=59.8

Q ss_pred             EEEE-cCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEe
Q 030856           12 LVFL-GDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (170)
Q Consensus        12 i~i~-G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   90 (170)
                      |+++ +..|+||||+.-.+...-.......+.     ........ ...+.+.|+|+...  ......+..+|.++++.+
T Consensus         2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~-----l~d~d~~~-~~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~   73 (106)
T cd03111           2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVL-----LVDLDLQF-GDDYVVVDLGRSLD--EVSLAALDQADRVFLVTQ   73 (106)
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEE-----EEECCCCC-CCCEEEEeCCCCcC--HHHHHHHHHcCeEEEEec
Confidence            3444 567899999866655332211011111     11111111 11689999998653  234456788999999988


Q ss_pred             CCChhhHHhHHHHHHHHHHhcCC-CCeEEEEEeC
Q 030856           91 VASRQSFLNTSKWIDEVRTERGS-DVIIVLVGNK  123 (170)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~vvv~nK  123 (170)
                      .+ ..++..+..+++.+.....+ ...+.+|+|+
T Consensus        74 ~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          74 QD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             CC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            65 45677777777776655433 4556677775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.84  E-value=0.0002  Score=50.61  Aligned_cols=105  Identities=17%  Similarity=0.262  Sum_probs=61.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh----------------
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------------   69 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------------   69 (170)
                      ..+-.+++++|++|.|||++++++.....+.. .+.             ...+++...++|...                
T Consensus        58 ~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~-------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP  123 (302)
T PF05621_consen   58 RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DED-------------AERIPVVYVQMPPEPDERRFYSAILEALGAP  123 (302)
T ss_pred             ccCCCceEEecCCCCcHHHHHHHHHHHCCCCC-CCC-------------CccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence            34457799999999999999999997654321 111             011234444444311                


Q ss_pred             --------hhhhhhhhhhcCCcEEEEEEeCCCh---hhHHhHHHHHHHHHHhcC-CCCeEEEEEeCC
Q 030856           70 --------RFRSLIPSYIRDSSVAVVVYDVASR---QSFLNTSKWIDEVRTERG-SDVIIVLVGNKT  124 (170)
Q Consensus        70 --------~~~~~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~  124 (170)
                              .........++....=++++|=-+.   -+....+..++.++.... -.+|+|.||++-
T Consensus       124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~  190 (302)
T PF05621_consen  124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE  190 (302)
T ss_pred             cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence                    1223344567778888888884321   223334444444444332 478999998753

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.83  E-value=0.00042  Score=50.46  Aligned_cols=21  Identities=24%  Similarity=0.444  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030856           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~   32 (170)
                      .++.|.-|+|||||+++++..
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         7 TIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            467799999999999999854

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.83  E-value=1.6e-05  Score=50.34  Aligned_cols=21  Identities=19%  Similarity=0.477  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030856           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~   32 (170)
                      |+++|+|||||||+++.+...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999998843

...

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.81  E-value=0.00025  Score=49.81  Aligned_cols=134  Identities=18%  Similarity=0.180  Sum_probs=71.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCC---------C-C-----------ccceeeeeeeEEEEE---------e-CCeE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFD---------N-T-----------YQATIGIDFLSKTMY---------L-EDRT   57 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~---------~-~-----------~~~~~~~~~~~~~~~---------~-~~~~   57 (170)
                      .-+++++|++|+||||++..+......         . .           +....+..+......         . ....
T Consensus        75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~  154 (270)
T PRK06731         75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR  154 (270)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence            368999999999999998877543110         0 0           000011111110000         0 0123


Q ss_pred             EEEEEEecCChhhhhh----hhhhhh--cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc
Q 030856           58 VRLQLWDTAGQERFRS----LIPSYI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~  131 (170)
                      +.+.++||+|......    ....++  ...+-+++|.|++..  .+....++..+..    -.+--++.||.|...   
T Consensus       155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~----~~~~~~I~TKlDet~---  225 (270)
T PRK06731        155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD----IHIDGIVFTKFDETA---  225 (270)
T ss_pred             CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC----CCCCEEEEEeecCCC---
Confidence            5789999999653221    112222  245678899997632  2233333333322    122355669999643   


Q ss_pred             cCHHHHHHHHHhcCCeEEEee
Q 030856          132 VSIEEGEAKSRELNVMFIETS  152 (170)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~S  152 (170)
                       ..-.+...+...+.|+..++
T Consensus       226 -~~G~~l~~~~~~~~Pi~~it  245 (270)
T PRK06731        226 -SSGELLKIPAVSSAPIVLMT  245 (270)
T ss_pred             -CccHHHHHHHHHCcCEEEEe
Confidence             23456667777788776664

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.80  E-value=1.3e-05  Score=52.03  Aligned_cols=22  Identities=32%  Similarity=0.546  Sum_probs=17.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ||+|+|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999865

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.80  E-value=1.9e-05  Score=53.63  Aligned_cols=24  Identities=13%  Similarity=0.159  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      -++|+|++|||||||+|-+-+-..
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld~   56 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLDK   56 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcccC
Confidence            478999999999999998775443

>KOG3929 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.79  E-value=3.7e-06  Score=57.58  Aligned_cols=146  Identities=14%  Similarity=0.175  Sum_probs=82.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCC-eEEEEEEEecCChhhhhhhhhhhhc----
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIR----   80 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~----   80 (170)
                      ...+..|++.|..+.  |++|++.+.+.-.. ..++...++......-.+ ..--..+|+.+|......+...-+.    
T Consensus        42 ~~~E~~I~~~Gn~~~--tt~I~~~FdR~e~~-~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l  118 (363)
T KOG3929|consen   42 EKFEFFIGSKGNGGK--TTIILRCFDRDEPP-KPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTL  118 (363)
T ss_pred             ccceeEEEEecCCce--eEeehhhcCcccCC-CCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccch
Confidence            345677888887665  89999988765432 245555555544443333 2223589999996654443332222    


Q ss_pred             CCcEEEEEEeCCChhh-HHhHHHHHHHHHHh------------------------------------c-CCCCeEEEEEe
Q 030856           81 DSSVAVVVYDVASRQS-FLNTSKWIDEVRTE------------------------------------R-GSDVIIVLVGN  122 (170)
Q Consensus        81 ~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~------------------------------------~-~~~~~~vvv~n  122 (170)
                      ..=.+|++.|+++++. |-.+...++.++++                                    + .-.+|+++|+.
T Consensus       119 ~~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgs  198 (363)
T KOG3929|consen  119 RTFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGS  198 (363)
T ss_pred             hhhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEecc
Confidence            1236788999998754 22222222111100                                    0 11578999999


Q ss_pred             CCCCCCCcc-----cCHHHHHHHHHhcCCeEEEeecC
Q 030856          123 KTDLVEKRQ-----VSIEEGEAKSRELNVMFIETSAK  154 (170)
Q Consensus       123 K~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~S~~  154 (170)
                      |.|.....+     -...-.+..|..+|...+-.|++
T Consensus       199 KYDvFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSsk  235 (363)
T KOG3929|consen  199 KYDVFQDFESEKRKHICKTLRFVAHYYGAALLMFSSK  235 (363)
T ss_pred             chhhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence            999765322     22333445555666655555554

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.79  E-value=2.5e-05  Score=43.19  Aligned_cols=22  Identities=14%  Similarity=0.368  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 030856           12 LVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~~   33 (170)
                      |++.|++|+||||+.+.+...-
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999988653

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>TIGR00235 udk uridine kinase

Probab=97.76  E-value=3.4e-05  Score=52.19  Aligned_cols=27  Identities=15%  Similarity=0.162  Sum_probs=22.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      +.+..-|+|+|++|+|||||++.+.+.
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            345578999999999999999998753

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.76  E-value=3.3e-05  Score=52.81  Aligned_cols=23  Identities=17%  Similarity=0.286  Sum_probs=20.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 030856           12 LVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      |+++|++|+|||||++-+.+-..
T Consensus        32 vsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            78999999999999999887443

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.75  E-value=2.5e-05  Score=52.32  Aligned_cols=24  Identities=17%  Similarity=0.250  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .++|+||+|||||||++.+-+-..
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE~   53 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLEE   53 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCcC
Confidence            578999999999999998875443

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.75  E-value=0.00026  Score=47.59  Aligned_cols=23  Identities=13%  Similarity=0.234  Sum_probs=19.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 030856           12 LVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      |+|+|++||||||+++.+.....
T Consensus         4 ilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhh
Confidence            78999999999999999876543

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=97.73  E-value=0.00034  Score=50.86  Aligned_cols=27  Identities=15%  Similarity=0.304  Sum_probs=23.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .+.+|+|+|++|||||||++++...-.
T Consensus       161 ~~~nilI~G~tGSGKTTll~aLl~~i~  187 (344)
T PRK13851        161 GRLTMLLCGPTGSGKTTMSKTLISAIP  187 (344)
T ss_pred             cCCeEEEECCCCccHHHHHHHHHcccC
Confidence            357899999999999999999987543

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.73  E-value=3.3e-05  Score=48.57  Aligned_cols=24  Identities=13%  Similarity=0.210  Sum_probs=21.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      =.++|+|+.|+|||||++.+.+..
T Consensus        12 ~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   12 EIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEccCCCccccceeeecccc
Confidence            368999999999999999988764

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK10646 ADP-binding protein; Provisional

Probab=97.72  E-value=0.00038  Score=44.55  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      -|++.|+-|+|||||.+.+...--
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~Lg   53 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQALG   53 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            478999999999999999987543

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.72  E-value=4.5e-05  Score=49.87  Aligned_cols=26  Identities=15%  Similarity=0.179  Sum_probs=22.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ....-++|+|++|||||||++++...
T Consensus         4 ~~~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          4 TMIPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             CCceEEEEECCCCChHHHHHHHHHHH
Confidence            34457899999999999999999865

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=97.70  E-value=0.00033  Score=50.74  Aligned_cols=27  Identities=22%  Similarity=0.326  Sum_probs=23.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      ...+|+|+|++|||||||++++...-.
T Consensus       159 ~~~nili~G~tgSGKTTll~aL~~~ip  185 (332)
T PRK13900        159 SKKNIIISGGTSTGKTTFTNAALREIP  185 (332)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHHhhCC
Confidence            367999999999999999999986543

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=97.68  E-value=0.00026  Score=50.97  Aligned_cols=25  Identities=20%  Similarity=0.420  Sum_probs=22.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      +.+|+|.|++|||||||+++|...-
T Consensus       144 ~~nilI~G~tGSGKTTll~aL~~~i  168 (323)
T PRK13833        144 RLNIVISGGTGSGKTTLANAVIAEI  168 (323)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999998753

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.67  E-value=0.0002  Score=48.63  Aligned_cols=21  Identities=19%  Similarity=0.390  Sum_probs=17.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 030856           10 YKLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~   30 (170)
                      +--+++|||||||||..+...
T Consensus         3 fgqvVIGPPgSGKsTYc~g~~   23 (290)
T KOG1533|consen    3 FGQVVIGPPGSGKSTYCNGMS   23 (290)
T ss_pred             cceEEEcCCCCCccchhhhHH
Confidence            346899999999999977544

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.65  E-value=5.3e-05  Score=47.31  Aligned_cols=26  Identities=15%  Similarity=0.224  Sum_probs=22.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFD   35 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~   35 (170)
                      -.++++|++|+|||+++..+......
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            47899999999999999999876554

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK14530 adenylate kinase; Provisional

Probab=97.65  E-value=5.1e-05  Score=51.60  Aligned_cols=22  Identities=18%  Similarity=0.360  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~   31 (170)
                      .+|+|+|+|||||||+.+.|..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998864

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.64  E-value=4.6e-05  Score=47.20  Aligned_cols=21  Identities=24%  Similarity=0.259  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030856           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~   32 (170)
                      |+|.|.+||||||+.+.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998855

...

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.63  E-value=6.9e-05  Score=49.09  Aligned_cols=25  Identities=16%  Similarity=0.218  Sum_probs=21.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      =.++|+|++|+|||||+|-+.+-..
T Consensus        26 e~vAi~GpSGaGKSTLLnLIAGF~~   50 (231)
T COG3840          26 EIVAILGPSGAGKSTLLNLIAGFET   50 (231)
T ss_pred             cEEEEECCCCccHHHHHHHHHhccC
Confidence            4689999999999999998876444

>PRK06217 hypothetical protein; Validated

Probab=97.63  E-value=5.5e-05  Score=50.15  Aligned_cols=23  Identities=13%  Similarity=0.237  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .+|+|+|.+||||||+.++|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998864

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.62  E-value=6.8e-05  Score=50.76  Aligned_cols=26  Identities=15%  Similarity=0.231  Sum_probs=23.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .+...|+|.|++|||||||.+.+...
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            36789999999999999999998764

>PRK03839 putative kinase; Provisional

Probab=97.62  E-value=5.7e-05  Score=49.90  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      +|+++|+||+||||+.+++...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988754

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.62  E-value=0.00015  Score=44.70  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      --|++-|+-|+|||||.+.+...-
T Consensus        16 ~vi~L~GdLGaGKTtf~r~l~~~l   39 (123)
T PF02367_consen   16 DVILLSGDLGAGKTTFVRGLARAL   39 (123)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHc
Confidence            457888999999999999988654

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.61  E-value=5.7e-05  Score=47.66  Aligned_cols=21  Identities=29%  Similarity=0.699  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030856           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~   32 (170)
                      |+|+|++|+|||||++.+...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999865

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.61  E-value=6.1e-05  Score=50.07  Aligned_cols=23  Identities=17%  Similarity=0.371  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      .++|+|++|+|||||++.+....
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            68999999999999999997653

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=97.61  E-value=0.00043  Score=43.82  Aligned_cols=25  Identities=20%  Similarity=0.251  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      --|++-|+-|+|||||.+.+...-.
T Consensus        26 ~Vv~L~GdLGAGKTtf~rgi~~~Lg   50 (149)
T COG0802          26 DVVLLSGDLGAGKTTLVRGIAKGLG   50 (149)
T ss_pred             CEEEEEcCCcCChHHHHHHHHHHcC
Confidence            4577889999999999999887644

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.59  E-value=6.8e-05  Score=51.53  Aligned_cols=26  Identities=27%  Similarity=0.664  Sum_probs=22.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ...++++++|++|||||+|+..++..
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHh
Confidence            45689999999999999999988854

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK08233 hypothetical protein; Provisional

Probab=97.59  E-value=7.7e-05  Score=49.19  Aligned_cols=24  Identities=17%  Similarity=0.192  Sum_probs=21.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ..-|+|.|.+|||||||.++|...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            467889999999999999999864

>PRK04195 replication factor C large subunit; Provisional

Probab=97.59  E-value=0.0016  Score=49.76  Aligned_cols=25  Identities=36%  Similarity=0.482  Sum_probs=21.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      .-.+++.|++|+||||+++.+....
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el   63 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDY   63 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            4568899999999999999997653

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=97.59  E-value=0.00066  Score=47.70  Aligned_cols=23  Identities=17%  Similarity=0.287  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      .|+|.|++|+||||+++.+....
T Consensus        82 lilisG~tGSGKTT~l~all~~i  104 (264)
T cd01129          82 IILVTGPTGSGKTTTLYSALSEL  104 (264)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhh
Confidence            48999999999999999987654

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.59  E-value=0.00053  Score=45.57  Aligned_cols=25  Identities=16%  Similarity=0.352  Sum_probs=21.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      .-.++++|++|+|||||++.+.+..
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4578999999999999999988654

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.58  E-value=6.1e-05  Score=49.67  Aligned_cols=22  Identities=14%  Similarity=0.255  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .++|+|++|||||||++.+...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998765

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.58  E-value=7e-05  Score=44.90  Aligned_cols=21  Identities=24%  Similarity=0.544  Sum_probs=18.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 030856           10 YKLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~   30 (170)
                      -.++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            457999999999999999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=97.57  E-value=0.00037  Score=47.47  Aligned_cols=103  Identities=11%  Similarity=0.113  Sum_probs=62.8

Q ss_pred             EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCCh--hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCH
Q 030856           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI  134 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~  134 (170)
                      .+.+.|.|+.|...  ......+..+|.+|+=.-.+..  +.-.....|+..+.+..++++|.-|+.|++.....+. ..
T Consensus        83 ~~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~~~~-~~  159 (231)
T PF07015_consen   83 GFDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAARLTR-AQ  159 (231)
T ss_pred             CCCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcchhhH-HH
Confidence            35789999998653  2344556689999987666632  2223335566666666678899999999997431111 11


Q ss_pred             HHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 030856          135 EEGEAKSRELNVMFIETSAKAGFNIKGCSP  164 (170)
Q Consensus       135 ~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~  164 (170)
                      ....++..  ++|++.+...+..-..+++.
T Consensus       160 ~~~~e~~~--~lpvl~t~l~eR~Af~~m~~  187 (231)
T PF07015_consen  160 RIISEQLE--SLPVLDTELHERDAFRAMFS  187 (231)
T ss_pred             HHHHHHHh--cCCccccccccHHHHHHHHH
Confidence            12222222  47888877776665555544

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.55  E-value=7.6e-05  Score=46.39  Aligned_cols=22  Identities=18%  Similarity=0.312  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 030856           12 LVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~~   33 (170)
                      |++.|++|+|||++++.+...-
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6899999999999999988653

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.55  E-value=8e-05  Score=47.15  Aligned_cols=22  Identities=23%  Similarity=0.557  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .|+|+|+.|+|||||+..|+..
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998854

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.55  E-value=0.0001  Score=49.80  Aligned_cols=26  Identities=23%  Similarity=0.369  Sum_probs=21.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .+..-|+|+|++|+|||||+++|...
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            35567888999999999999999754

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.55  E-value=0.00093  Score=51.27  Aligned_cols=83  Identities=12%  Similarity=0.073  Sum_probs=42.8

Q ss_pred             cEEEEEEeCCC---hhhHHhHHHHHHHHHHhcCCCC-eEEEEEeCCCCCCCcc------cCH--HHHHHHHHhcCCeEEE
Q 030856           83 SVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDV-IIVLVGNKTDLVEKRQ------VSI--EEGEAKSRELNVMFIE  150 (170)
Q Consensus        83 d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~-~~vvv~nK~D~~~~~~------~~~--~~~~~~~~~~~~~~~~  150 (170)
                      --+|+|=|+-+   .++ ..+...+......  ... |+|+|++-+|......      ...  ....++....++..+.
T Consensus       133 ~kvILVEDlPN~~~~~~-~~f~~~L~~~l~~--~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~  209 (519)
T PF03215_consen  133 KKVILVEDLPNVFHRDT-SRFREALRQYLRS--SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIK  209 (519)
T ss_pred             ceEEEeeccccccchhH-HHHHHHHHHHHHc--CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEE
Confidence            34566656543   222 3444444433332  234 9999999665322111      011  1123444556677777


Q ss_pred             eecCCCCChHHHHHHHHh
Q 030856          151 TSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus       151 ~S~~~~~~v~~~~~~l~~  168 (170)
                      ..+.....+...+..|++
T Consensus       210 FNpIa~T~mkKaL~rI~~  227 (519)
T PF03215_consen  210 FNPIAPTFMKKALKRILK  227 (519)
T ss_pred             ecCCCHHHHHHHHHHHHH
Confidence            777766666666666553

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.54  E-value=0.0055  Score=40.16  Aligned_cols=84  Identities=12%  Similarity=0.005  Sum_probs=50.6

Q ss_pred             EEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHH
Q 030856           59 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE  138 (170)
Q Consensus        59 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~  138 (170)
                      .+.++|+|+....  .....+..+|.+|++.+.+. .++..+...+..+...  ......+|.|+.+.....  ..+..+
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~~--~~~~~~  136 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL--GIKVVGVIVNRVRPDMVE--GGDMVE  136 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc--CCceEEEEEeCCcccccc--hhhHHH
Confidence            6899999975432  34455688999999998763 4555555555555442  223567888999853221  122234


Q ss_pred             HHHHhcCCeEE
Q 030856          139 AKSRELNVMFI  149 (170)
Q Consensus       139 ~~~~~~~~~~~  149 (170)
                      .+.+..+.+++
T Consensus       137 ~~~~~~~~~v~  147 (179)
T cd02036         137 DIEEILGVPLL  147 (179)
T ss_pred             HHHHHhCCCEE
Confidence            44455566544

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.54  E-value=8.4e-05  Score=48.69  Aligned_cols=25  Identities=24%  Similarity=0.511  Sum_probs=21.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      -.-+++.||+|+|||||+++|....
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc
Confidence            3557889999999999999999776

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.54  E-value=8e-05  Score=49.11  Aligned_cols=22  Identities=23%  Similarity=0.545  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      -|+++|++|+|||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4789999999999999999875

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.54  E-value=0.00094  Score=43.42  Aligned_cols=25  Identities=16%  Similarity=0.179  Sum_probs=21.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      =.++++|+.|+|||||++.+.+...
T Consensus        27 e~~~l~G~nGsGKSTLl~~i~G~~~   51 (163)
T cd03216          27 EVHALLGENGAGKSTLMKILSGLYK   51 (163)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3678999999999999999987643

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.53  E-value=7.5e-05  Score=50.11  Aligned_cols=21  Identities=19%  Similarity=0.378  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030856           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~   32 (170)
                      |+|.|++|||||||.+.+...
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998764

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.53  E-value=7.9e-05  Score=51.66  Aligned_cols=21  Identities=19%  Similarity=0.256  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030856           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~   32 (170)
                      ++++|+.|+|||||++.+.+-
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            589999999999999998863

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.52  E-value=8.2e-05  Score=49.35  Aligned_cols=22  Identities=14%  Similarity=0.261  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ..|+++|++||||||+++.+..
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999873

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=97.52  E-value=0.00057  Score=49.25  Aligned_cols=25  Identities=20%  Similarity=0.534  Sum_probs=22.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ..-+++|+|++|+|||||++++...
T Consensus       147 ~~~~ilI~G~tGSGKTTll~aL~~~  171 (319)
T PRK13894        147 AHRNILVIGGTGSGKTTLVNAIINE  171 (319)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999999865

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.51  E-value=9.7e-05  Score=48.62  Aligned_cols=23  Identities=22%  Similarity=0.434  Sum_probs=20.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      .-.++++|+.|+|||||++.+..
T Consensus        21 G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          21 NVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhh
Confidence            35789999999999999998863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=97.51  E-value=0.00068  Score=48.48  Aligned_cols=24  Identities=17%  Similarity=0.487  Sum_probs=21.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      +-+++|+|++|+||||+++++...
T Consensus       132 ~~~ilI~G~tGSGKTTll~al~~~  155 (299)
T TIGR02782       132 RKNILVVGGTGSGKTTLANALLAE  155 (299)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999865

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.50  E-value=0.00013  Score=50.09  Aligned_cols=26  Identities=23%  Similarity=0.360  Sum_probs=22.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ...++|+++|+|||||||+...+...
T Consensus         4 ~~~mrIvl~G~PGsGK~T~a~~La~~   29 (229)
T PTZ00088          4 KGPLKIVLFGAPGVGKGTFAEILSKK   29 (229)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            34578999999999999999988753

>PRK14532 adenylate kinase; Provisional

Probab=97.49  E-value=0.0001  Score=49.00  Aligned_cols=23  Identities=22%  Similarity=0.501  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ++|+++|+|||||||+..++...
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~~   23 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVEE   23 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999998753

>PRK14531 adenylate kinase; Provisional

Probab=97.49  E-value=0.00011  Score=48.69  Aligned_cols=23  Identities=30%  Similarity=0.514  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .+|+++|+|||||||+...+...
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~   25 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAA   25 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988653

>PRK00625 shikimate kinase; Provisional

Probab=97.49  E-value=0.00011  Score=48.32  Aligned_cols=23  Identities=26%  Similarity=0.251  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ++|+++|.+||||||+.+.+...
T Consensus         1 ~~I~LiG~pGsGKTT~~k~La~~   23 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAKF   23 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999988643

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.48  E-value=0.0004  Score=47.26  Aligned_cols=45  Identities=31%  Similarity=0.352  Sum_probs=30.9

Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 030856           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL  126 (170)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~  126 (170)
                      .+++|.+|.|.|.+. +++....+ +.++....+ =.++.+|+||.|-
T Consensus       153 ~~~vD~vivVvDpS~-~sl~taer-i~~L~~elg-~k~i~~V~NKv~e  197 (255)
T COG3640         153 IEGVDLVIVVVDPSY-KSLRTAER-IKELAEELG-IKRIFVVLNKVDE  197 (255)
T ss_pred             ccCCCEEEEEeCCcH-HHHHHHHH-HHHHHHHhC-CceEEEEEeeccc
Confidence            568999999999874 34444333 344444442 3789999999995

>PRK01889 GTPase RsgA; Reviewed

Probab=97.48  E-value=0.00018  Score=52.66  Aligned_cols=25  Identities=20%  Similarity=0.539  Sum_probs=21.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      -+++++|.+|+|||||+|.+.+...
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~~  220 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEEV  220 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhcc
Confidence            4789999999999999999997543

>PRK13949 shikimate kinase; Provisional

Probab=97.48  E-value=0.00011  Score=48.10  Aligned_cols=22  Identities=18%  Similarity=0.403  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      +|+++|++|+||||+.+.+...
T Consensus         3 ~I~liG~~GsGKstl~~~La~~   24 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARE   24 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999987753

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.48  E-value=0.00011  Score=46.40  Aligned_cols=22  Identities=18%  Similarity=0.365  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .|+++|++|+|||+|++.+...
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~   22 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAAL   22 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4799999999999999988754

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.48  E-value=0.00011  Score=50.03  Aligned_cols=21  Identities=14%  Similarity=0.393  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~   31 (170)
                      -|+++|++|+|||||++.+-+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            479999999999999999886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	170
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		2e-67
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		5e-67
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		7e-67
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		3e-66
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		5e-66
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		5e-66
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		2e-65
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		1e-55
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		2e-31
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		2e-31
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		3e-31
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		5e-31
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		6e-31
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		6e-31
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		8e-31
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		9e-31
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		1e-30
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		1e-30
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		1e-30
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		2e-30
2efc_B	181	Ara7-GdpATVPS9A Length = 181		2e-30
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		2e-30
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		2e-30
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		3e-30
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		4e-30
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		6e-30
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		7e-30
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		5e-29
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		6e-29
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		6e-29
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		7e-29
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		1e-28
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		2e-28
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		3e-28
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		4e-28
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		8e-28
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		2e-27
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		2e-27
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		4e-27
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		4e-27
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		5e-27
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		5e-27
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		7e-27
4fmc_B	171	Espg-Rab1 Complex Length = 171		8e-27
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		9e-27
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		9e-27
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		1e-26
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		1e-26
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		1e-26
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		2e-26
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		2e-26
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		2e-26
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		3e-26
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		3e-26
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		3e-26
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		4e-26
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		4e-26
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		5e-26
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		5e-26
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		6e-26
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		6e-26
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		7e-26
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		1e-25
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		1e-25
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		1e-25
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		1e-25
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		2e-25
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		2e-25
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		3e-25
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		3e-25
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		3e-25
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		3e-25
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		5e-25
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		5e-25
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		6e-25
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		1e-24
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		2e-24
1vg1_A	185	Gdp-bound Rab7 Length = 185		2e-24
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		4e-24
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		5e-24
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		5e-24
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		5e-24
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		6e-24
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		1e-23
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		1e-23
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		1e-23
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		2e-23
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		4e-23
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		5e-23
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		1e-22
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-22
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-22
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		6e-22
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		6e-22
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		8e-22
4fmc_F	117	Espg-Rab1 Complex Length = 117		4e-21
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		4e-21
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		7e-21
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		8e-21
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		9e-21
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		1e-20
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		1e-20
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		3e-20
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		1e-19
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		1e-19
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		4e-19
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		2e-18
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		3e-17
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		1e-15
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		9e-15
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		1e-14
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		1e-14
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		2e-14
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		2e-14
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		2e-14
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		2e-14
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		2e-14
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-14
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		4e-14
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		4e-14
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		5e-14
1byu_A	216	Canine Gdp-Ran Length = 216		5e-14
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		5e-14
2bku_A	177	Kap95p:rangtp Complex Length = 177		6e-14
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		6e-14
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		8e-14
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		8e-14
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		9e-14
3icq_B	171	Karyopherin Nuclear State Length = 171		9e-14
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		1e-13
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-13
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		1e-13
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		1e-13
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		1e-13
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-13
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		1e-13
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		1e-13
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		2e-13
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		2e-13
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		2e-13
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		2e-13
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		2e-13
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		3e-13
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		3e-13
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		3e-13
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		8e-13
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		1e-12
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		1e-12
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		4e-12
1mh1_A	186	Small G-Protein Length = 186		5e-12
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		5e-12
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		5e-12
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		6e-12
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		6e-12
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		7e-12
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		8e-12
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		9e-12
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		1e-11
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		1e-11
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		1e-11
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		1e-11
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		1e-11
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		1e-11
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		1e-11
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		1e-11
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		1e-11
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		2e-11
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		2e-11
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		2e-11
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		2e-11
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		2e-11
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		2e-11
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		2e-11
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		2e-11
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		2e-11
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		2e-11
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		2e-11
1s1c_A	183	Crystal Structure Of The Complex Between The Human		2e-11
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		2e-11
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		3e-11
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		3e-11
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		3e-11
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		3e-11
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		3e-11
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		3e-11
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		3e-11
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		4e-11
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		5e-11
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		7e-11
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		7e-11
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		7e-11
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		7e-11
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-10
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-10
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		1e-10
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		1e-10
4q21_A	189	Molecular Switch For Signal Transduction: Structura		2e-10
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		3e-10
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		3e-10
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		3e-10
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		3e-10
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		3e-10
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		3e-10
1wq1_R	166	Ras-Rasgap Complex Length = 166		3e-10
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		3e-10
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		3e-10
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		4e-10
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		4e-10
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		4e-10
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		4e-10
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		4e-10
6q21_A	171	Molecular Switch For Signal Transduction: Structura		4e-10
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		4e-10
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		4e-10
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		4e-10
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		4e-10
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		4e-10
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		4e-10
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		5e-10
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		5e-10
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		5e-10
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		5e-10
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		6e-10
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		6e-10
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		8e-10
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		8e-10
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		8e-10
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		8e-10
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		8e-10
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		8e-10
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		9e-10
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		9e-10
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		9e-10
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		9e-10
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		1e-09
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		1e-09
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		1e-09
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-09
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		1e-09
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		1e-09
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		1e-09
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		1e-09
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		1e-09
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-09
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		2e-09
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		2e-09
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		2e-09
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		2e-09
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		3e-09
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		3e-09
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		3e-09
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		3e-09
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		3e-09
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-09
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		3e-09
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		4e-09
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		4e-09
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		4e-09
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		4e-09
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		5e-09
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		5e-09
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		5e-09
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		5e-09
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		5e-09
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		5e-09
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		5e-09
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		5e-09
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		6e-09
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		6e-09
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		6e-09
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		7e-09
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		7e-09
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		1e-08
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		1e-08
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		2e-08
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		2e-08
2kb0_A	178	Cdc42(T35a) Length = 178		2e-08
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		2e-08
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		4e-08
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		4e-08
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		4e-08
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		7e-08
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		8e-08
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		8e-08
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		2e-07
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		2e-07
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		3e-06
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		4e-06
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		4e-06
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		2e-05
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		3e-05
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		4e-05
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		8e-05
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		8e-05
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-04
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		4e-04
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		7e-04

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  251 bits (641), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 122/156 (78%), Positives = 134/156 (85%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWD
Sbjct: 2   SPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 61
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 62  TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 121
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 122 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 157

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  249 bits (636), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 121/152 (79%), Positives = 132/152 (86%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ
Sbjct: 1   KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 60
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           ERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKTDL +
Sbjct: 61  ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 120
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 121 KRQVSIEEGERKAKELNVMFIETSAKAGYNVK 152

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  249 bits (635), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 122/156 (78%), Positives = 133/156 (85%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 10  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 69
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIR               SF  TSKWID+VRTERGSDVII+LVGNKT
Sbjct: 70  TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKT 129
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVS EEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 130 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 165

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  246 bits (629), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 121/156 (77%), Positives = 133/156 (85%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 2   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 61
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAG ERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 62  TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 121
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 122 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 157

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  246 bits (628), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 120/156 (76%), Positives = 133/156 (85%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 68
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAG ERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 69  TAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  246 bits (628), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 121/156 (77%), Positives = 133/156 (85%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 12  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 71
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAG ERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 72  TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 131
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 132 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 167

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  244 bits (623), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/153 (76%), Positives = 131/153 (85%)
Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
            K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG
Sbjct: 1   GKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 60
Query: 68  QERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127
           QERFRSLIPSYIR               SF  TSKWID+VRTERGSDVII+LVGNKTDL 
Sbjct: 61  QERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLA 120
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           +KRQ++IEEGE +++EL+VMFIETSAK G+N+K
Sbjct: 121 DKRQITIEEGEQRAKELSVMFIETSAKTGYNVK 153

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  211 bits (538), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 118/152 (77%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           KYKLVFLG+Q+VGKTSIITRF YD FDN YQ+TIGIDFLSKT+YL++  VRLQLWDTAGQ
Sbjct: 1   KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQ 60
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           ERFRSLIPSYIR             RQSF NT+KWI ++  ERG DVII LVGNKTDL +
Sbjct: 61  ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD 120
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            R+V+ EEG  K++E N  F ETSAKAG NIK
Sbjct: 121 LRKVTYEEGXQKAQEYNTXFHETSAKAGHNIK 152

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  131 bits (329), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 96/156 (61%)
Query: 4   VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
            S + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++++ L+D TV+ ++W
Sbjct: 3   ASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIW 62
Query: 64  DTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNK 123
           DTAGQER+ SL P Y R             +++F     W+ E++ +    ++I L GNK
Sbjct: 63  DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNK 122
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
            DL  KR V  EE +A + + +++F+ETSAK   N+
Sbjct: 123 ADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNV 158

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  131 bits (329), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/152 (42%), Positives = 97/152 (63%), Gaps = 1/152 (0%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD SVGKT ++ RF    F     +TIG+DF  KT+ ++ + V+LQ+WDTAGQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             R SFL+   WI++VR   GS+++ +L+GNK+DL E 
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149
Query: 130 RQVSIEEGEAKSRELNVMF-IETSAKAGFNIK 160
           R+VS+ E ++ +   +++  IETSAK   N++
Sbjct: 150 REVSLAEAQSLAEHYDILCAIETSAKDSSNVE 181

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  130 bits (328), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 97/157 (61%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D + ++Y +TIG+DF  +T+ LE++TV+LQ+WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             R SF N  +WI E+      +V  +LVGNK DLV K
Sbjct: 70  RFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSK 129
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166
           R V+ +EG   +    + FIETSAK  +N++    T+
Sbjct: 130 RVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTM 166

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  130 bits (326), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 99/161 (61%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  +Y R              +SF N   WI  +     +DV  +++GNK D+ +K
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           RQVS E GE  + +  + F+ETSAKA  N++    T+ R I
Sbjct: 129 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  129 bits (325), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 99/161 (61%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  +Y R              +SF N   WI  +     +DV  +++GNK D+ +K
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           RQVS E GE  + +  + F+ETSAKA  N++    T+ R I
Sbjct: 127 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  129 bits (325), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 94/153 (61%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 1   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 60
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R               +F     W+ E++ +   +++I L GNK DL
Sbjct: 61  GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 120
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             KR V  +E +A + + +++F+ETSAK   N+
Sbjct: 121 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNV 153

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  129 bits (324), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 95/153 (62%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 5   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL
Sbjct: 65  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 124
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             KR V  +E ++ + + +++F+ETSAK   N+
Sbjct: 125 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 157

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  129 bits (324), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 95/153 (62%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 4   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             KR V  +E ++ + + +++F+ETSAK   N+
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 156

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 94/153 (61%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+  VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 4   ICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             KR V  +E ++ + + +++F+ETSAK   N+
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 156

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 92/152 (60%), Gaps = 3/152 (1%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV LG+ +VGK+SI+ RF+ + F    + TIG  FL++ + + + TV+ ++WDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE-- 128
           F SL P Y R              QSF+    W+ E+  +   D+II LVGNK D ++  
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 129 -KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
            +R+V+ EEGE  + E  ++F ETSAK G N+
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENV 156

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 94/153 (61%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+  VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 4   ICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             KR V  +E ++ + + +++F+ETSAK   N+
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 156

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 94/153 (61%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+  VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 4   ICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             KR V  +E ++ + + +++F+ETSAK   N+
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 156

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 93/150 (62%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV LGD   GK+S++ RF+ D+F    ++TIG  F S+T+ + D TV+ ++WDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           + SL P Y R             + SF    KW+ E++ +   ++++ L GNK+DL++ R
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           +V+ E+ +  ++E  + F+ETSAK   N+K
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVK 163

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 94/153 (61%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 5   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL
Sbjct: 65  GQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 124
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             KR V  +E ++ + + +++F ETSAK   N+
Sbjct: 125 ANKRAVDFQEAQSYADDNSLLFXETSAKTSXNV 157

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  127 bits (320), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 94/153 (61%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+  VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 4   ICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             KR V  +E ++ + + +++F+ETSAK   N+
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 156

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  127 bits (319), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 94/153 (61%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+  VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 4   ICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             KR V  +E ++ + + +++F+ETSAK   N+
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 156

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  127 bits (318), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 94/154 (61%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++ ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDT
Sbjct: 2   SICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDT 61
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125
           AG ER+ SL P Y R               +F     W+ E++ +   +++I L GNK D
Sbjct: 62  AGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKAD 121
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           L  KR V  +E +A + + +++F+ETSAK   N+
Sbjct: 122 LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNV 155

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  126 bits (317), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 94/154 (61%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++ ++KLV LG+ +VGK+S++ RF+  +F    ++TI   FL++T+ L+D TV+ ++WDT
Sbjct: 2   SICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDT 61
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125
           AGQER+ SL P Y R               +F     W+ E++ +   +++I L GNK D
Sbjct: 62  AGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKAD 121
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           L  KR V  +E +A + + +++F+ETSAK   N+
Sbjct: 122 LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNV 155

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  126 bits (316), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 94/153 (61%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 3   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           G ER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL
Sbjct: 63  GLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 122
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             KR V  +E ++ + + +++F+ETSAK   N+
Sbjct: 123 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNV 155

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  123 bits (308), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 98/160 (61%), Gaps = 1/160 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQLWDTAGQER
Sbjct: 9   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 68
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           FR++  +Y R              ++F N  +W   V      +  ++LVGNK+D+ E R
Sbjct: 69  FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR 127
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
            V+ ++GEA ++EL + FIE+SAK   N+     T+ +LI
Sbjct: 128 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 167

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  123 bits (308), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 98/160 (61%), Gaps = 1/160 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQLWDTAGQER
Sbjct: 22  KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           FR++  +Y R              ++F N  +W   V      +  ++LVGNK+D+ E R
Sbjct: 82  FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR 140
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
            V+ ++GEA ++EL + FIE+SAK   N+     T+ +LI
Sbjct: 141 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  123 bits (308), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 96/151 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
            FRS+  SY R             R++F + + W+++ R    S+++I+L+GNK+DL  +
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 141
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  EEGEA +RE  ++F+ETSAK   N++
Sbjct: 142 RDVKREEGEAFAREHGLIFMETSAKTACNVE 172

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  122 bits (307), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 96/151 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 11  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 70
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
            FRS+  SY R             R +F + + W+++ R    S+++I+L+GNK+DL  +
Sbjct: 71  SFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESR 130
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R+V  EEGEA +RE  ++F+ETSAK   N++
Sbjct: 131 REVKKEEGEAFAREHGLIFMETSAKTASNVE 161

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  122 bits (305), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 98/160 (61%), Gaps = 1/160 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQ+WDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           FR++  +Y R              ++F N  +W   V      +  ++LVGNK+D+ E R
Sbjct: 65  FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR 123
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
            V+ ++GEA ++EL + FIE+SAK   N+     T+ +LI
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 98/160 (61%), Gaps = 1/160 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQLWDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           FR++  +Y R              ++F N  +W   V      +  ++LVGNK+D  E R
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETR 123
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
            V+ ++GEA ++EL + FIE+SAK   N+     T+ +LI
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  120 bits (302), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 88/156 (56%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           SA+ + K+  LGD  VGK+SI+ RF+ D FD+    TIG  F++KT+   +   +  +WD
Sbjct: 19  SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERF SL P Y R             + SF    KW+ E++     ++++ + GNK 
Sbjct: 79  TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKC 138
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL + R+V +++ +  +  +  + +ETSAK   NI+
Sbjct: 139 DLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIE 174

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  120 bits (301), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 98/160 (61%), Gaps = 1/160 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQ+WDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           FR++  +Y R              ++F N  +W   V      +  ++LVGNK+D  E R
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETR 123
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
            V+ ++GEA ++EL + FIE+SAK   N+     T+ +LI
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  119 bits (298), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 92/160 (57%)
Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           + P  +   +KL+ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++L
Sbjct: 14  LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKL 73
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           Q+WDTAGQER+R++  +Y R             ++SF     W  +++T    +  ++LV
Sbjct: 74  QIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILV 133
Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           GNK DL ++R V  E+G   + +L   F E SAK   N+K
Sbjct: 134 GNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVK 173

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +K++ +GD  VGKT ++ RF    F   T+ +T+GIDF +K + ++   V+LQ+WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           ERFRS+  +Y R             + SF N   W+ E+      DV ++L+GNK D   
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           +R V  E+GE  ++E  + F+ETSAK G N+
Sbjct: 131 ERVVKREDGEKLAKEYGLPFMETSAKTGLNV 161

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/151 (40%), Positives = 88/151 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ +    V+LQ+WDTAGQE
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R              +SF    +W+ E+     + VI VLVGNK DL E+
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 146
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R+VS +  E  S   ++ ++ETSAK   N++
Sbjct: 147 REVSQQRAEEFSEAQDMYYLETSAKESDNVE 177

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  117 bits (292), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 98/157 (62%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 21  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R               ++ N  +W+ E+R    S+++I+LVGNK+DL   
Sbjct: 81  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 140
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166
           R V  +E  A + +  + FIETSA    N++    TI
Sbjct: 141 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 177

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  117 bits (292), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 91/153 (59%)
Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           A +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAG
Sbjct: 5   ALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 64
Query: 68  QERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127
           QERFR++  SY R             ++SF N  +W+ E+      +V  +LVGNK DL 
Sbjct: 65  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            K+ V     +  +  L + F+ETSAK   N++
Sbjct: 125 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 157

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  116 bits (291), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 98/157 (62%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R               ++ N  +W+ E+R    S+++I+LVGNK+DL   
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166
           R V  +E  A + +  + FIETSA    N++    TI
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  116 bits (291), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 90/151 (59%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++SF N  +W+ E+      +V  +LVGNK DL  K
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           + V     +  +  L + F+ETSAK   N++
Sbjct: 137 KVVDYTTAKEFADSLGIPFLETSAKNATNVE 167

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  116 bits (290), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 90/151 (59%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 26  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++SF N  +W+ E+      +V  +LVGNK DL  K
Sbjct: 86  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 145
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           + V     +  +  L + F+ETSAK   N++
Sbjct: 146 KVVDYTTAKEFADSLGIPFLETSAKNATNVE 176

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  116 bits (290), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 90/151 (59%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++SF N  +W+ E+      +V  +LVGNK DL  K
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           + V     +  +  L + F+ETSAK   N++
Sbjct: 127 KVVDYTTAKEFADSLGIPFLETSAKNATNVE 157

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  115 bits (289), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 96/151 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R +  +Y R               ++ N  +W+ E+R    S+++I+LVGNK+DL   
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  +E  A + + N+ FIETSA    N++
Sbjct: 126 RAVPTDEARAFAEKNNLSFIETSALDSTNVE 156

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  115 bits (289), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 89/151 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK  ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++SF N  +W+ E+      +V  +LVGNK DL  K
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           + V     +  +  L + F+ETSAK   N++
Sbjct: 137 KVVDYTTAKEFADSLGIPFLETSAKNATNVE 167

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 90/151 (59%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++SF N  +W+ E+      +V  +LVGNK DL  K
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           + V     +  +  L + F+ETSAK   N++
Sbjct: 154 KVVDYTTAKEFADSLGIPFLETSAKNATNVE 184

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++S+ N  +W+ E+      +V  +LVGNK+DL  K
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           + V     +  +  L + F+ETSAK   N++
Sbjct: 130 KVVDNTTAKEFADSLGIPFLETSAKNATNVE 160

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 91/151 (60%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++S+ N  +W+ E+      +V  +LVGNK+DL  K
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           + V     +  +  L + F+ETSAK   N++
Sbjct: 130 KVVDNTTAKEFADSLGIPFLETSAKNATNVE 160

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 89/150 (59%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           FR++  SY R             ++SF N  +W+ E+      +V  +LVGNK DL  K+
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            V     +  +  L + F+ETSAK   N++
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVE 150

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 92/150 (61%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++T+ +E + ++ Q+WDTAGQE
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R               S+ N + W+ E+R     +V + L+GNK+DL   
Sbjct: 74  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL 133
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           R V  EE +  ++E  ++F ETSA    N+
Sbjct: 134 RAVPTEESKTFAQENQLLFTETSALNSENV 163

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 85/155 (54%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           +L + K+  LGD  VGK+SI+ RF+ D FD     TIG  F++KT+  ++   +  +WDT
Sbjct: 2   SLRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 61
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125
           AGQERFR+L P Y R              ++F     W+ E+R      +++ + GNK D
Sbjct: 62  AGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 121
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           L + R+V   + +  +  ++ +F+ETSAK   NI 
Sbjct: 122 LTDVREVMERDAKDYADSIHAIFVETSAKNAININ 156

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  114 bits (285), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 91/161 (56%), Gaps = 3/161 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++LQ+WDTAGQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R              +SF     W  +++T    +  ++LVGNK D+ ++
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           R VS E G   +  L   F E SAK   N+K    T  RL+
Sbjct: 126 RVVSSERGRQLADHLGFEFFEASAKDNINVK---QTFERLV 163

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  114 bits (284), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 84/145 (57%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R+  +KF++ +  T+G  FL+K + +  + V L +WDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RF +L P Y R               SF     W+ E+R   G+++ + +VGNK DL ++
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 130 RQVSIEEGEAKSRELNVMFIETSAK 154
           R VSI+E E+ +  +      TSAK
Sbjct: 127 RHVSIQEAESYAESVGAKHYHTSAK 151

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  114 bits (284), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 85/156 (54%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           SAL + K+  LGD  VGK+SI+ RF+ D FD     TIG  F++KT+  ++   +  +WD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAG ERFR+L P Y R              ++F     W+ E+R      +++ + GNK 
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKC 121
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL + R+V   + +  +  ++ +F+ETSAK   NI 
Sbjct: 122 DLTDVREVMERDAKDYADSIHAIFVETSAKNAININ 157

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  114 bits (284), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 97/157 (61%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R               ++ N  +W+ E+R    S+++I+LVGNK+DL   
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166
           R V  +E  A + +  + FIETSA    N++    TI
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  113 bits (283), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 97/157 (61%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 9   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R               ++ N  +W+ E+R    S+++I+LVGNK+DL   
Sbjct: 69  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166
           R V  +E  A + +  + FIETSA    N++    TI
Sbjct: 129 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 165

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  113 bits (283), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 89/151 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  ++ V+LQ+WDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R              +SF     W  +++T    +  ++LVGNK D+ E+
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  E+G+  + +L   F E SAK   +++
Sbjct: 144 RVVPTEKGQLLAEQLGFDFFEASAKENISVR 174

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  113 bits (282), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 91/161 (56%), Gaps = 1/161 (0%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+S++ RF  + F  +Y  TIG+DF  +T+ +    V+LQ+WDTAGQE
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  +Y R              +SF+N  +W+ E+  +   DV  +LVGNK D  E+
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI-NQNCDDVCRILVGNKNDDPER 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           + V  E+    + ++ +   ETSAK   N++     I  L+
Sbjct: 129 KVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  113 bits (282), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 96/157 (61%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R               ++ N  +W+ E+R    S+++I LVGNK+DL   
Sbjct: 66  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 125
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166
           R V  +E  A + +  + FIETSA    N++    TI
Sbjct: 126 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 162

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  113 bits (282), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 97/152 (63%), Gaps = 1/152 (0%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQ 68
           +K+V +GD  VGK+++++RF  D+F+   ++TIG++F +K++ L++ + ++ Q+WDTAGQ
Sbjct: 8   FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           ER+R++  +Y R             + SF N  KW+ E+R    S+++I+LVGNK+DL  
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKH 127
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            R ++  +    +++  + FIETSA    N++
Sbjct: 128 LRVINDNDATQYAKKEKLAFIETSALEATNVE 159

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  112 bits (281), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 96/157 (61%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R               ++ N  +W+ E+R    S+++I LVGNK+DL   
Sbjct: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 131
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI 166
           R V  +E  A + +  + FIETSA    N++    TI
Sbjct: 132 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 168

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 89/151 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++SF N  +W+ E+      +V  +LVG K DL  K
Sbjct: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTK 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           + V     +  +  L + F+ETSAK   N++
Sbjct: 129 KVVDYTTAKEFADSLGIPFLETSAKNATNVE 159

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 93/161 (57%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+  VGK+ ++ RF  D + N Y +TIG+DF  KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 22  FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++SF     W+ E+     S V+ +LVGNK DL +K
Sbjct: 82  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 141
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           R V  +  +  +    + F+ETSA    N++    T+ R I
Sbjct: 142 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 86/161 (53%), Gaps = 6/161 (3%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S+   YK+V  GD +VGK+S + R   ++F     AT+G+DF  KT+ ++     LQLWD
Sbjct: 24  SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWD 83
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERFRS+  SY R              +SFLN  +W+D +       V I+LVGNK 
Sbjct: 84  TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKA 143
Query: 125 DLVE------KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           D+ +      ++ V    GE  +     +F ETSAK G NI
Sbjct: 144 DIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI 184

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 93/161 (57%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+  VGK+ ++ RF  D + N Y +TIG+DF  KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++SF     W+ E+     S V+ +LVGNK DL +K
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           R V  +  +  +    + F+ETSA    N++    T+ R I
Sbjct: 129 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 93/161 (57%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+  VGK+ ++ RF  D + N Y +TIG+DF  KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++SF     W+ E+     S V+ +LVGNK DL +K
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           R V  +  +  +    + F+ETSA    N++    T+ R I
Sbjct: 129 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 95/161 (59%), Gaps = 4/161 (2%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G    GK+ ++ +F+ +KF      TIG++F S+ + +  +TV+LQ+WDTAGQE
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R             R+++ + + W+ + RT    +++++L GNK DL  +
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK----GCSPTI 166
           R+V+  E    ++E  +MF+ETSA  G N++     C+ TI
Sbjct: 146 REVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 91/159 (57%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           AP +    +K + +GD  VGK+ ++ +F   KF      TIG++F ++ + +  + ++LQ
Sbjct: 8   APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ 67
Query: 62  LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVG 121
           +WDTAGQERFR++  SY R             R ++ + S W+ + R     + +I+L+G
Sbjct: 68  IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 127
Query: 122 NKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           NK DL  +R V+ EE +  + E  ++F+E SAK G N++
Sbjct: 128 NKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVE 166

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 93/161 (57%), Gaps = 3/161 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  D+F+   ++TIG++F ++T+ +E++ ++ Q+WDTAG E
Sbjct: 11  FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLE 70
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R               S+ N + W+ E+R     +V + L+GNK+DL   
Sbjct: 71  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHL 130
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           R V  +E +  + E  ++F ETSA    N        R LI
Sbjct: 131 RAVPTDEAKNFAMENQMLFTETSA---LNSDNVDKAFRELI 168

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 83/145 (57%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R+  +KF++ +  T+   FL+K + +  + V L +WDTAGQE
Sbjct: 21  FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 80
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RF +L P Y R               SF     W+ E+R   G+++ + +VGNK DL ++
Sbjct: 81  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 140
Query: 130 RQVSIEEGEAKSRELNVMFIETSAK 154
           R VSI+E E+ +  +      TSAK
Sbjct: 141 RHVSIQEAESYAESVGAKHYHTSAK 165

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  110 bits (275), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 83/145 (57%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R+  +KF++ +  T+   FL+K + +  + V L +WDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RF +L P Y R               SF     W+ E+R   G+++ + +VGNK DL ++
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 130 RQVSIEEGEAKSRELNVMFIETSAK 154
           R VSI+E E+ +  +      TSAK
Sbjct: 127 RHVSIQEAESYAESVGAKHYHTSAK 151

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  110 bits (274), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 92/159 (57%), Gaps = 1/159 (0%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           +P  A  K +++ +G + VGKTS++ RF  D F    ++T+G+DF  KT+ L  + +RLQ
Sbjct: 19  SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQ 78
Query: 62  LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVG 121
           +WDTAGQERF S+  +Y R             +++F +  KW+  +      D  ++LVG
Sbjct: 79  IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG 138
Query: 122 NKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNI 159
           NK D    R+++ ++GE  ++++  M F E SAK  FN+
Sbjct: 139 NKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNV 177

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  110 bits (274), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 91/161 (56%), Gaps = 3/161 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++LQ+WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R              +SF     W  +++T    +  ++LVGNK D  ++
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDE 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           R VS E G   +  L   F E SAK   N+K    T  RL+
Sbjct: 129 RVVSSERGRQLADHLGFEFFEASAKDNINVK---QTFERLV 166

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  110 bits (274), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 87/149 (58%), Gaps = 2/149 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           L   K++ +G+  VGK+S++ RF  D FD    ATIG+DF  KT+ ++    +L +WDTA
Sbjct: 13  LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTA 72
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTD 125
           GQERFR+L PSY R             R +F+    W++E+ T    +D++  LVGNK D
Sbjct: 73  GQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID 132
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
             E R+V   EG   +R+ + +FIE SAK
Sbjct: 133 -KENREVDRNEGLKFARKHSXLFIEASAK 160

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 92/163 (56%), Gaps = 6/163 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K + ++DR V +Q+WDTAGQER
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS----DVIIVLVGNKTDL 126
           F+SL  ++ R               +F     W DE   +       +   V++GNK DL
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
Query: 127 VEKRQVSIEEGEAKS-RELNVMFIETSAKAGFNIKGCSPTIRR 168
            E RQV+ +  +A    + N+ + ETSAK   N++    TI R
Sbjct: 130 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 90/159 (56%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           AP +    +K + +GD  VGK+ ++ +F   KF      TIG++F ++ + +  + ++LQ
Sbjct: 23  APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ 82
Query: 62  LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVG 121
           +WDTAGQ RFR++  SY R             R ++ + S W+ + R     + +I+L+G
Sbjct: 83  IWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 142
Query: 122 NKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           NK DL  +R V+ EE +  + E  ++F+E SAK G N++
Sbjct: 143 NKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVE 181

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 92/163 (56%), Gaps = 6/163 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K + ++DR V +Q+WDTAGQER
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS----DVIIVLVGNKTDL 126
           F+SL  ++ R               +F     W DE   +       +   V++GNK DL
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
Query: 127 VEKRQVSIEEGEAKS-RELNVMFIETSAKAGFNIKGCSPTIRR 168
            E RQV+ +  +A    + N+ + ETSAK   N++    TI R
Sbjct: 130 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  107 bits (266), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 91/163 (55%), Gaps = 6/163 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K + ++DR V +Q+WDTAGQER
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS----DVIIVLVGNKTDL 126
           F+SL  ++ R               +F     W DE   +       +   V++GNK D 
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDF 129
Query: 127 VEKRQVSIEEGEAKS-RELNVMFIETSAKAGFNIKGCSPTIRR 168
            E RQV+ +  +A    + N+ + ETSAK   N++    TI R
Sbjct: 130 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  107 bits (266), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 88/151 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G+   GK+ ++ +F+  KF +    TIG++F SK + +  + V+LQ+WDTAGQE
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R             R+++   + W+ + R     +++I+L GNK DL   
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 130
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R+V+  E    ++E  +MF+ETSA  G N++
Sbjct: 131 REVTFLEASRFAQENELMFLETSALTGENVE 161

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  106 bits (265), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 94/161 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT++++RF  ++F +  + TIG++F ++T+ L    V+ Q+WDTAG E
Sbjct: 11  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R              Q++    +W+ E+     + ++++LVGNK+DL + 
Sbjct: 71  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 130
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           R+V  EE    +    ++F+ETSA    N++    T+ + I
Sbjct: 131 REVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 171

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  106 bits (265), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 94/161 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT++++RF  ++F +  + TIG++F ++T+ L    V+ Q+WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R              Q++    +W+ E+     + ++++LVGNK+DL + 
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           R+V  EE    +    ++F+ETSA    N++    T+ + I
Sbjct: 146 REVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  106 bits (265), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 98/178 (55%), Gaps = 10/178 (5%)
Query: 2   APVSALAK---YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTV 58
            P+ +  K   +K++ LGD  VGK+S++ R++ +KFD+    TIG++FL+K + ++   V
Sbjct: 1   GPLGSAGKSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFV 60
Query: 59  RLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDE----VRTERGSD 114
            +Q+WDTAGQERFRSL   + R              QSF N S W  E       +    
Sbjct: 61  TMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPES 120
Query: 115 VIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKGC-SPTIRRLI 170
              V++GNKTD+ E RQVS EE +A  ++  +  + ETSAK   N+       +RR++
Sbjct: 121 FPFVILGNKTDIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRIL 177

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/176 (37%), Positives = 97/176 (55%), Gaps = 9/176 (5%)
Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA  S+L  +K++ LGD  VGK+S++ R++ +KFD     TIG++FL+K + ++   V +
Sbjct: 3   MAGKSSL--FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTM 60
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDE----VRTERGSDVI 116
           Q+WDTAGQERFRSL   + R              QSF N S W  E       +      
Sbjct: 61  QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP 120
Query: 117 IVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKGC-SPTIRRLI 170
            V++GNK D+ E RQVS EE +A  R+  +  + ETSAK   N+       +RR++
Sbjct: 121 FVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 175

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/176 (37%), Positives = 97/176 (55%), Gaps = 9/176 (5%)
Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA  S+L  +K++ LGD  VGK+S++ R++ +KFD     TIG++FL+K + ++   V +
Sbjct: 1   MAGKSSL--FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTM 58
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDE----VRTERGSDVI 116
           Q+WDTAGQERFRSL   + R              QSF N S W  E       +      
Sbjct: 59  QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP 118
Query: 117 IVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKGC-SPTIRRLI 170
            V++GNK D+ E RQVS EE +A  R+  +  + ETSAK   N+       +RR++
Sbjct: 119 FVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 91/163 (55%), Gaps = 6/163 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K + ++DR V +Q+WDTAG ER
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLER 69
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS----DVIIVLVGNKTDL 126
           F+SL  ++ R               +F     W DE   +       +   V++GNK DL
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
Query: 127 VEKRQVSIEEGEAKS-RELNVMFIETSAKAGFNIKGCSPTIRR 168
            E RQV+ +  +A    + N+ + ETSAK   N++    TI R
Sbjct: 130 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 88/151 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G+   GK+ ++ +F+  KF +    TIG++F SK + +  + V+LQ+WDTAGQE
Sbjct: 12  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R             R+++   + W+ + R     +++I+L GNK DL   
Sbjct: 72  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 131
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R+V+  E    ++E  +MF+ETSA  G +++
Sbjct: 132 REVTFLEASRFAQENELMFLETSALTGEDVE 162

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  103 bits (258), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +G+ +VGK+S+I R+    F   Y+ TIG+DFL + + + D  VRL LWDTAGQE 
Sbjct: 7   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           F ++  +Y R             R+SF   S W ++V  E G D+   LV NK DL++  
Sbjct: 67  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDS 125
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNI 159
            +  EE E  ++ L + F  TS K   N+
Sbjct: 126 CIKNEEAEGLAKRLKLRFYRTSVKEDLNV 154

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  103 bits (257), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 11/171 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +    +           V L
Sbjct: 27  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVL 119
           QLWDTAGQERFRSL  ++ R             +QSFLN   W+ +++      +  IVL
Sbjct: 87  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 146
Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           +GNK DL ++R+V+  +    + +  + + ETSA  G N++    T+  LI
Sbjct: 147 IGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 87/151 (57%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G+   GK+ ++ +F+  KF +    TIG++F SK + +  + V+LQ+WDTAG E
Sbjct: 9   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R             R+++   + W+ + R     +++I+L GNK DL   
Sbjct: 69  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R+V+  E    ++E  +MF+ETSA  G +++
Sbjct: 129 REVTFLEASRFAQENELMFLETSALTGEDVE 159

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 91/171 (53%), Gaps = 11/171 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +  + +           V L
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVL 119
           QLWDTAG ERFRSL  ++ R             +QSFLN   W+ +++      +  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 132
Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           +GNK DL ++R+V+  +    + +  + + ETSA  G N++    T+  LI
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 91/171 (53%), Gaps = 11/171 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +  + +           V L
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVL 119
           QLWDTAG ERFRSL  ++ R             +QSFLN   W+ +++      +  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 132
Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           +GNK DL ++R+V+  +    + +  + + ETSA  G N++    T+  LI
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 99.8 bits (247), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +  + +           V L
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVL 119
           QLWDTAG ERFRSL  ++ R             +QSFLN   W  +++      +  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132
Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           +GNK DL ++R+V+  +    + +  + + ETSA  G N++    T+  LI
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 99.8 bits (247), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +  + +           V L
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVL 119
           QLWDTAG ERFRSL  ++ R             +QSFLN   W  +++      +  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132
Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           +GNK DL ++R+V+  +    + +  + + ETSA  G N++    T+  LI
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLI 183

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 99.4 bits (246), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 87/171 (50%), Gaps = 11/171 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE----------DRTVRL 60
           K + LGD  VGKTS++ ++   KF++ +  T+GIDF  K +              + + L
Sbjct: 13  KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS-DVIIVL 119
           QLWDTAG ERFRSL  ++ R              QSFLN   WI +++    S +  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVL 132
Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
            GNK+DL ++R V  EE    + +  + + ETSA  G NI      +  LI
Sbjct: 133 CGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 71/115 (61%)
Query: 12  LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71
           L+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQERF
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 72  RSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           R++  SY R             ++SF N  +W+ E+      +V  +LVGNK DL
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 97.1 bits (240), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 86/154 (55%), Gaps = 6/154 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGK+S++ R++ +KFD+    TIG++FL++ + ++ R V LQ+WDTAGQER
Sbjct: 9   KVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQER 68
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDE----VRTERGSDVIIVLVGNKTDL 126
           F+SL   + R             RQSF N   W  E       +       V++GNK D 
Sbjct: 69  FKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVD- 127
Query: 127 VEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNI 159
            E RQV+ EE +    E  +  ++ETSAK   N+
Sbjct: 128 KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNV 161

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 96.3 bits (238), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 81/147 (55%), Gaps = 2/147 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT +  RF   +F +  +ATIG+DF  + + ++   +++QLWDTAGQE
Sbjct: 30  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 89
Query: 70  RFR-SLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLV 127
           RFR S++  Y R               SF +   WI+E +     +D+  +LVGNK DL 
Sbjct: 90  RFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 149
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAK 154
              QV  +  +  +   +    ETSAK
Sbjct: 150 SAIQVPTDLAQKFADTHSXPLFETSAK 176

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 96.3 bits (238), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 81/147 (55%), Gaps = 2/147 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT +  RF   +F +  +ATIG+DF  + + ++   +++QLWDTAGQE
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 70  RFR-SLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLV 127
           RFR S++  Y R               SF +   WI+E +     +D+  +LVGNK DL 
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAK 154
              QV  +  +  +   ++   ETSAK
Sbjct: 141 SAIQVPTDLAQKFADTHSMPLFETSAK 167

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 95.9 bits (237), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 93/156 (59%), Gaps = 2/156 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           ++LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + D
Sbjct: 10  NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 68
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
           TAGQE + ++  +Y R              +SF  T+ + +++ R +   +V  +LVGNK
Sbjct: 69  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 128
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           +DL +KRQVS+EE + ++ + NV ++ETSAK   N+
Sbjct: 129 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANV 164

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 93/156 (59%), Gaps = 2/156 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           ++LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + D
Sbjct: 14  NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 72
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
           TAGQE + ++  +Y R              +SF  T+ + +++ R +   +V  +LVGNK
Sbjct: 73  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 132
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           +DL +KRQVS+EE + ++ + NV ++ETSAK   N+
Sbjct: 133 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANV 168

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 93/156 (59%), Gaps = 2/156 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           ++LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + D
Sbjct: 2   NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 60
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
           TAGQE + ++  +Y R              +SF  T+ + +++ R +   +V  +LVGNK
Sbjct: 61  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 120
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           +DL +KRQVS+EE + ++ + NV ++ETSAK   N+
Sbjct: 121 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANV 156

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 92/155 (59%), Gaps = 2/155 (1%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           +LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + DT
Sbjct: 1   SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDT 59
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKT 124
           AGQE + ++  +Y R              +SF  T+ + +++ R +   +V  +LVGNK+
Sbjct: 60  AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 119
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           DL +KRQVS+EE + ++ + NV ++ETSAK   N+
Sbjct: 120 DLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANV 154

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 87/166 (52%), Gaps = 9/166 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQE 69
           K++ LGD  VGKTS++ R++ DK+   Y+ATIG DFL+K + ++ D+   +Q+WDTAGQE
Sbjct: 10  KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSD----VIIVLVGNKTD 125
           RF+SL  ++ R               SF N   W DE       +       V++GNK D
Sbjct: 70  RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 129
Query: 126 LVEKRQVSIEEGE---AKSRELNVMFIETSAKAGFNIKGCSPTIRR 168
             E +++  E+     AKS     +F+ TSAK   N+      I R
Sbjct: 130 AEESKKIVSEKSAQELAKSLGDIPLFL-TSAKNAINVDTAFEEIAR 174

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 92/156 (58%), Gaps = 2/156 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           ++LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + D
Sbjct: 2   NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 60
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
           TAG E + ++  +Y R              +SF  T+ + +++ R +   +V  +LVGNK
Sbjct: 61  TAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 120
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           +DL +KRQVS+EE + ++ + NV ++ETSAK   N+
Sbjct: 121 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANV 156

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 90.5 bits (223), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 92/157 (58%), Gaps = 3/157 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S+LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + D
Sbjct: 3   SSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 61
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVI-IVLVGN 122
           TAG E + ++  +Y R              +SF  T+++ +++ R +   D I +++VGN
Sbjct: 62  TAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGN 121
Query: 123 KTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           K+DL E+RQV +EE  +K+ E  V ++ETSAK   N+
Sbjct: 122 KSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANV 158

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 90/155 (58%), Gaps = 3/155 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + DTA
Sbjct: 1   LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVI-IVLVGNKT 124
           G E + ++  +Y R              +SF  T+++ +++ R +   D I +++VGNK+
Sbjct: 60  GLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKS 119
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           DL E+RQV +EE  +K+ E  V ++ETSAK   N+
Sbjct: 120 DLEERRQVPVEEARSKAEEWGVQYVETSAKTRANV 154

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 84/191 (43%), Gaps = 40/191 (20%)
Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------- 56
           + YK V LG+ SVGK+SI+ R   D F      TIG  F +  + L D            
Sbjct: 6   SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKN 65
Query: 57  --------------------------TVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXX 90
                                      ++  +WDTAGQER+ S++P Y R          
Sbjct: 66  NNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFD 125
Query: 91  XXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIE 150
                +      W+++++    S+ II+LV NK D   K QV I E +  +++ N++FI+
Sbjct: 126 ISNSNTLDRAKTWVNQLKI--SSNYIIILVANKIDK-NKFQVDILEVQKYAQDNNLLFIQ 182
Query: 151 TSAKAGFNIKG 161
           TSAK G NIK 
Sbjct: 183 TSAKTGTNIKN 193

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 88/167 (52%), Gaps = 2/167 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S   KY+LV +G   VGK+++  +F+   F   Y  TI  D  +K   ++DR  RL + D
Sbjct: 1   SMQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILD 59
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
           TAGQE F ++   Y+R             R SF    K+  ++ R +   +  ++L+GNK
Sbjct: 60  TAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNK 119
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
            DL  +RQV+ EEG+  +R+L V ++E SAK   N+      + R+I
Sbjct: 120 ADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 76.3 bits (186), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 78/163 (47%), Gaps = 14/163 (8%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + +   TV L LWDTAGQE 
Sbjct: 10  KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGATVNLGLWDTAGQED 68
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P   R             + S+ N S KWI E++      V IVLVG K DL + 
Sbjct: 69  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIVLVGTKLDLRDD 127
Query: 130 RQVSIEEGEA------KSRELNVM-----FIETSAKAGFNIKG 161
           +Q  I+   A      +  EL  +     +IE S+K+  N+KG
Sbjct: 128 KQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKG 170

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 15  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D +
Sbjct: 75  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 131
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           + R+V     +AKS    R+ N+ + + SAK+ +N +
Sbjct: 132 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 163

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D +
Sbjct: 70  EKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 126
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           + R+V     +AKS    R+ N+ + + SAK+ +N +
Sbjct: 127 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 158

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D +
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 126
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           + R+V     +AKS    R+ N+ + + SAK+ +N +
Sbjct: 127 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 158

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 3   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D +
Sbjct: 63  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 119
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           + R+V     +AKS    R+ N+ + + SAK+ +N +
Sbjct: 120 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 151

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D +
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 126
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           + R+V     +AKS    R+ N+ + + SAK+ +N +
Sbjct: 127 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 158

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D +
Sbjct: 70  EKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 126
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           + R+V     +AKS    R+ N+ + + SAK+ +N +
Sbjct: 127 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 158

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ 
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 127
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           +++       +AKS    R+ N+ + + SAK+ +N +
Sbjct: 128 DRKV------KAKSIVFHRKKNLQYYDISAKSNYNFE 158

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
            + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT
Sbjct: 1   GMTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 59
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKT 124
           AGQE + ++   Y+R              +SF +   + +++ R +   DV +VLVGNK+
Sbjct: 60  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKS 119
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           DL   R V  ++ +  +R   + FIETSAK
Sbjct: 120 DL-PSRTVDTKQAQDLARSYGIPFIETSAK 148

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 78/163 (47%), Gaps = 14/163 (8%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++  TV L LWDTAGQE 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGNTVNLGLWDTAGQED 66
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P   R             + S+ N + KWI E+R      V I+LVG K DL + 
Sbjct: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDD 125
Query: 130 RQVSIEEGEA------KSREL-----NVMFIETSAKAGFNIKG 161
           +Q  I+   A      +  EL     + ++IE S+K   N+K 
Sbjct: 126 KQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKA 168

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E++  L   Y               R ++ N   W  D VR     ++ IVL GNK D +
Sbjct: 70  EKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 126
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           + R+V     +AKS    R+ N+ + + SAK+ +N +
Sbjct: 127 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 158

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV LG   VGK+++  +F+   F + Y  TI  D   K + ++ +   L++ DTA
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIE-DSYRKQVEVDCQQCMLEILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E+F ++   Y++             + +F +     +++ R +   DV ++LVGNK D
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNIK 160
           L ++R V  E+G+  +R+  N  F+E+SAK+  N+ 
Sbjct: 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVN 155

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y  T+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D +
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 126
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           + R+V     +AKS    R+ N+ + + SAK+ +N +
Sbjct: 127 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 158

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTAGQ
Sbjct: 4   EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQ 62
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLV 127
           E + ++   Y+R              +SF +   + +++ R +   DV +VLVGNK DL 
Sbjct: 63  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL- 121
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAK 154
             R V  ++ +  +R   + FIETSAK
Sbjct: 122 PSRTVDTKQAQDLARSYGIPFIETSAK 148

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y  T+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ 
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 127
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           +++       +AKS    R+ N+ + + SAK+ +N +
Sbjct: 128 DRKV------KAKSIVFHRKKNLQYYDISAKSNYNFE 158

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 13/156 (8%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD   GKT+ + R +  +F+  Y ATIG++    + Y     ++  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLVE 128
           +F  L   Y               R ++ N   W  D VR     ++ IVL GNK D V+
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD-VK 129
Query: 129 KRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           +R+V     +AK+    R+ N+ + + SAK+ +N +
Sbjct: 130 ERKV-----KAKTITFHRKKNLQYYDISAKSNYNFE 160

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 72.8 bits (177), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 84/155 (54%), Gaps = 3/155 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTA
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E+F ++   Y++             + +F +     +++ R +   DV ++LVGNK D
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNI 159
           L ++R V  E+G+  +R+  N  F+E+SAK+  N+
Sbjct: 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINV 154

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 72.8 bits (177), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 75/162 (46%), Gaps = 4/162 (2%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLW 63
           S + + K+V LGD + GKTS+ T F  + F   Y+ TIG+DF  + + L  +  V LQ+W
Sbjct: 2   SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61
Query: 64  DTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKW---IDEVRTERGSDVIIVLV 120
           D  GQ     ++  YI               QSF N   W   + +V  E  +  ++ LV
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121
Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGC 162
           GNK DL   R +  E+     +E        SAK G ++  C
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC 163

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 72.8 bits (177), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 13/156 (8%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD   GKT+ + R +  +F+  Y ATIG++    + Y     ++  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLVE 128
           +F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ E
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKE 123
Query: 129 KRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           ++       +AK+    R+ N+ + + SAK+ +N +
Sbjct: 124 RKV------KAKTITFHRKKNLQYYDISAKSNYNFE 153

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 72.8 bits (177), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 13/156 (8%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD   GKT+ + R +  +F+  Y ATIG++    + Y     ++  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLVE 128
           +F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ E
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKE 122
Query: 129 KRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           ++       +AK+    R+ N+ + + SAK+ +N +
Sbjct: 123 RKV------KAKTITFHRKKNLQYYDISAKSNYNFE 152

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKTS++  +  + +   Y  T   D  S  + ++ R VRLQL DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT-AFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           F  L P                   SF N S KW+ E+R        I+LVG ++DL E 
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRC-HCPKAPIILVGTQSDLRED 139
Query: 130 RQVSIEEGEAKSREL 144
            +V IE  + K + +
Sbjct: 140 VKVLIELDKCKEKPV 154

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 3/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G + VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAG 
Sbjct: 12  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 71
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ 
Sbjct: 72  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 129
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           +++       +AKS    R+ N+ + + SAK+ +N +
Sbjct: 130 DRKV------KAKSIVFHRKKNLQYYDISAKSNYNFE 160

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAG 
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 69
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D +
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 126
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           + R+V     +AKS    R+ N+ + + SAK+ +N +
Sbjct: 127 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 158

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  + +  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 15  QFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D +
Sbjct: 75  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 131
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           + R+V     +AKS    R+ N+ + + SAK+ +N +
Sbjct: 132 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 163

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
            ++ +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ D
Sbjct: 1   GSMREYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILD 59
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
           TAG E+F ++   Y++             + +F +     +++ R +   DV ++LVGNK
Sbjct: 60  TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNK 119
Query: 124 TDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNI 159
            DL ++R V  E+G+  +R+  N  F+E+SAK+  N+
Sbjct: 120 CDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINV 156

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAG 
Sbjct: 6   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 65
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ 
Sbjct: 66  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 123
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           +++       +AKS    R+ N+ + + SAK+ +N +
Sbjct: 124 DRKV------KAKSIVFHRKKNLQYYDISAKSNYNFE 154

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-GRTVESRQAQDLARSYGIPYIETSAK 147

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 84/155 (54%), Gaps = 3/155 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTA
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E+F ++   Y++             + +F +     +++ R +   DV ++LVGNK D
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNI 159
           L ++R V  E+G+  +R+  N  F+E+SAK+  N+
Sbjct: 120 LEDERVVGKEQGQNLARQWNNCAFLESSAKSKINV 154

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 19/176 (10%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRF--MYDKFD--------NTYQATIGIDFLSKTMYLED 55
            +  Y++V +G+Q VGK+++   F  ++D  D        +TY+ T+ +D  S T+ L  
Sbjct: 3   GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL-- 60
Query: 56  RTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS-D 114
               L +W+  G+  +  L    ++             R SF   S+   ++R  R + D
Sbjct: 61  ----LDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED 114
Query: 115 VIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           + I+LVGNK+DLV  R+VS+ EG A +   +  FIETSA    N+K     I R +
Sbjct: 115 IPIILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 19/162 (11%)
Query: 10  YKLVFLGDQSVGKTSIITRF--MYDKFD--------NTYQATIGIDFLSKTMYLEDRTVR 59
           Y++V +G+Q VGK+++   F  ++D  D        +TY+ T+ +D  S T+ L      
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL------ 60
Query: 60  LQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS-DVIIV 118
           L +W+  G+  +  L    ++             R SF   S+   ++R  R + D+ I+
Sbjct: 61  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 119 LVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           LVGNK+DLV  R+VS+ EG A +   +  FIETSA    N+K
Sbjct: 119 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 160

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 19/176 (10%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRF--MYDKFD--------NTYQATIGIDFLSKTMYLED 55
            +  Y++V +G+Q VGK+++   F  ++D  D        +TY+ T+ +D  S T+ L  
Sbjct: 3   GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL-- 60
Query: 56  RTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS-D 114
               L +W+  G+  +  L    ++             R SF   S+   ++R  R + D
Sbjct: 61  ----LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED 114
Query: 115 VIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           + I+LVGNK+DLV  R+VS+ EG A +   +  FIETSA    N+K     I R +
Sbjct: 115 IPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 19/162 (11%)
Query: 10  YKLVFLGDQSVGKTSIITRF--MYDKFD--------NTYQATIGIDFLSKTMYLEDRTVR 59
           Y++V +G+Q VGK+++   F  ++D  D        +TY+ T+ +D  S T+ L      
Sbjct: 38  YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL------ 91
Query: 60  LQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS-DVIIV 118
           L +W+  G+  +  L    ++             R SF   S+   ++R  R + D+ I+
Sbjct: 92  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 149
Query: 119 LVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           LVGNK+DLV  R+VS+ EG A +   +  FIETSA    N+K
Sbjct: 150 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 191

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 3/151 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAG 67
           YK+  +GD  VGKT+ I R +  +F+  Y AT+G        +L+D+   ++  +WDTAG
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGA-VNHPVTFLDDQGNVIKFNVWDTAG 70
Query: 68  QERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127
           QE+   L   Y               R +  N ++W+ E +   G++  IV+  NK D+ 
Sbjct: 71  QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158
            ++++S +      +  N  + E SAK   N
Sbjct: 131 NRQKISKKLVMEVLKGKNYEYFEISAKTAHN 161

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 69.7 bits (169), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 75/152 (49%), Gaps = 7/152 (4%)
Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           A+ KL   G   VGK++++ RF+  +F   Y  T+   +  +   ++D  V +++ DTAG
Sbjct: 27  AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAG 85
Query: 68  QERFRSLIPSYIRXXXXXXXXXXXXXRQSF---LNTSKWIDEVRTERGSDVIIVLVGNKT 124
           QE        ++R             R SF   L     +DE++  +  +V ++LVGNK 
Sbjct: 86  QEDTIQR-EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPK--NVTLILVGNKA 142
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAG 156
           DL   RQVS EEGE  + EL   F E SA  G
Sbjct: 143 DLDHSRQVSTEEGEKLATELACAFYECSACTG 174

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 12/161 (7%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 11  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAGQED 69
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P   R             + S+ N   KW+ E+R     +V IVLVG K DL + 
Sbjct: 70  YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLRDD 128
Query: 130 RQ--------VSIEEGEAKSRELN-VMFIETSAKAGFNIKG 161
           +         ++  +GE   +++    +IE S+K   N+K 
Sbjct: 129 KGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKA 169

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 14/171 (8%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++  TV L LWDTAGQE 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P   R             + S+ N   KW+ E++      + IVLVG K DL + 
Sbjct: 67  YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELK-HYAPGIPIVLVGTKLDLRDD 125
Query: 130 RQ----------VSIEEGEAKSRELN-VMFIETSAKAGFNIKGCSPTIRRL 169
           +Q          ++  +GE   + +  V ++E S+K   N+K    T  R+
Sbjct: 126 KQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRV 176

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 4/157 (2%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++A Y++V LGD  VGKTS+ + F   K +      +G D   +T+ ++     L + DT
Sbjct: 1   SMALYRVVLLGDPGVGKTSLASLFA-GKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDT 59
Query: 66  AGQERFRSLIP--SYIRXXXXXXXXXXXXXRQSFLNTSKW-IDEVRTERGSDVIIVLVGN 122
              E+        S ++             R SF + S+  I   RT +   V I+LVGN
Sbjct: 60  WEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGN 119
Query: 123 KTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           K DL   R+VS+EEG A +   +  FIETSA    N+
Sbjct: 120 KADLARCREVSVEEGRACAVVFDCKFIETSATLQHNV 156

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 124
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 67
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 68  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 126
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 127 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 163

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 74/151 (49%), Gaps = 2/151 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +G   VGK+++  +F+   F + Y  TI  D  +K   ++    RL + DTAGQE
Sbjct: 10  HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQE 68
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVE 128
            F ++   Y+R             RQSF    K   ++ R +   D  +VLVGNK DL  
Sbjct: 69  EFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 128
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           +RQV   E  A     +V + E SAK   N+
Sbjct: 129 QRQVPRSEASAFGASHHVAYFEASAKLRLNV 159

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 66.2 bits (160), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           SA  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWD
Sbjct: 5   SAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWD 63
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P                   S  N   KW  EV+     +V I+LVGNK
Sbjct: 64  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNK 122
Query: 124 TDL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
            DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 123 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 166

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 66.2 bits (160), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 149
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 24  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 82
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 83  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 141
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 142 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 178

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 73
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 74  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 132
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 133 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 169

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P                   SF N  +KW  EVR        I+LVG K DL + 
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRDD 123
Query: 130 R------------QVSIEEGEAKSREL-NVMFIETSA 153
           +             ++  +G A +RE+ +V ++E SA
Sbjct: 124 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSA 160

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P                   SF N  +KW  EVR        I+LVG K DL + 
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRDD 123
Query: 130 R------------QVSIEEGEAKSREL-NVMFIETSA 153
           +             ++  +G A +RE+ +V ++E SA
Sbjct: 124 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSA 160

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P                   SF N  +KW  EVR        I+LVG K DL + 
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRDD 122
Query: 130 R------------QVSIEEGEAKSREL-NVMFIETSA 153
           +             ++  +G A +RE+ +V ++E SA
Sbjct: 123 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSA 159

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 87/170 (51%), Gaps = 3/170 (1%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
            P+ ++ +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L 
Sbjct: 1   GPLGSMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLD 59
Query: 62  LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLV 120
           + DTAGQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLV
Sbjct: 60  ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLV 119
Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           GNK DL   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 GNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 87/170 (51%), Gaps = 3/170 (1%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
            P+ ++ +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L 
Sbjct: 1   GPLGSMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLD 59
Query: 62  LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLV 120
           + DTAGQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLV
Sbjct: 60  ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLV 119
Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           GNK DL   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 GNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S +   K V +GD +VGK  ++  +  + F   Y  T+  D  S  + ++ + V L LWD
Sbjct: 6   SGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWD 64
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P                   SF N  +KW  EVR     +  I+LVG K
Sbjct: 65  TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTK 123
Query: 124 TDL------VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
            DL      +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 124 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 166

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 8/148 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG +SVGK+S+  +F+  +F ++Y  TI   F +K + +  +   LQL DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSF----LNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           +     +Y                +SF    +   K +D V   +   + I+LVGNK DL
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGNKKDL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAK 154
             +R +S EEG+A +   N  F+E+SAK
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAK 151

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   S+ N  +KW  EVR    S  II LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E++ V ++E SA
Sbjct: 123 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 159

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 11  KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQED 69
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   S+ N  +KW  EVR    S  II LVG K DL   
Sbjct: 70  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDD 128
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E++ V ++E SA
Sbjct: 129 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 165

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 8/148 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG +SVGK+S+  +F+  +F ++Y  TI   F +K + +  +   LQL DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSF----LNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           +     +Y                +SF    +   K +D V   +   + I+LVGNK DL
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGNKKDL 118
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAK 154
             +R +S EEG+A +   N  F+E+SAK
Sbjct: 119 HMERVISYEEGKALAESWNAAFLESSAK 146

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 12  KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQED 70
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   S+ N  +KW  EVR    S  II LVG K DL   
Sbjct: 71  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDD 129
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E++ V ++E SA
Sbjct: 130 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 166

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 3/153 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++   G   VGK+S++ RF+   F  +Y  T+  D   + +  +     LQ+ DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDKSICTLQITDTTGSH 62
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLV 127
           +F ++    I              RQS        +++   +G    + I+LVGNK D  
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             R+V   E EA +R     F+ETSAK   N+K
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVK 155

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 8/148 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG +SVGK+S+  +F+  +F ++Y  TI   F +K + +  +   LQL DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSF----LNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           +     +Y                +SF    +   K +D V   +   + I+LVGNK DL
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGNKKDL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAK 154
             +R +S EEG+A +   N  F+E+SAK
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAK 151

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 4   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDT 62
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 63  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 121
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 122 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 164

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 4   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 62
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 63  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 121
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 122 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 164

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 3   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 61
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 62  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 120
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 121 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 163

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 2   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 60
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 162

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 5   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 63
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 64  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 122
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 123 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 3   AAIRKKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDT 61
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 62  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 120
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 121 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 163

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 22  AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDT 80
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 81  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 139
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  ++   ++E SAK
Sbjct: 140 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 4   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 62
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 63  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 121
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 122 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 164

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 7   LAKY-KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           L +Y K+V LG + VGKTS+  +F+  +F   Y  T+   + SK + L      L L DT
Sbjct: 21  LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDT 79
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKT 124
           AGQ+ +  L  S+I                SF        ++    G + V +VLVGNK 
Sbjct: 80  AGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKA 139
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           DL  +R+V   EG+  +      F+E+SA+
Sbjct: 140 DLSPEREVQAVEGKKLAESWGATFMESSAR 169

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 22  AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDT 80
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 81  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVGNKK 139
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  ++   ++E SAK
Sbjct: 140 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +     Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNALPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 149
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 66
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 67  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 125
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 126 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 162

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 90
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 149
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
            + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT
Sbjct: 1   GMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 59
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKT 124
           AGQE + ++   Y+R              +SF +   + +++ R +   DV +VLVGNK+
Sbjct: 60  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKS 119
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           DL   R V  ++ +  +R   + FIETSAK
Sbjct: 120 DL-PSRTVDTKQAQDLARSYGIPFIETSAK 148

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
            + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT
Sbjct: 1   GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 59
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKT 124
           AGQE + ++   Y+R              +SF +   + +++ R +   DV +VLVGNK+
Sbjct: 60  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKS 119
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           DL   R V  ++ +  +R   + FIETSAK
Sbjct: 120 DL-PSRTVDTKQAQDLARSYGIPFIETSAK 148

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 86/170 (50%), Gaps = 3/170 (1%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
            P+ ++ +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L 
Sbjct: 1   GPLGSMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLD 59
Query: 62  LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLV 120
           + DTAG E + ++   Y+R              +SF +  ++ +++ R +   DV +VLV
Sbjct: 60  ILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLV 119
Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           GNK DL   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 GNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 3/131 (2%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++ + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 22  SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDT 80
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW+ EV+     +V I+LV NK 
Sbjct: 81  AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKK 139
Query: 125 DLVEKRQVSIE 135
           DL     V  E
Sbjct: 140 DLRSDEHVRTE 150

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++ +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT
Sbjct: 7   SMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 65
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKT 124
           AGQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK 
Sbjct: 66  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKC 125
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           DL   R V   + +  +R   + +IETSAK
Sbjct: 126 DLA-ARTVESRQAQDLARSYGIPYIETSAK 154

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 2   AAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 60
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 162

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 76/148 (51%), Gaps = 8/148 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG +SVGK+S+  +F+  +F ++   TI   F +K + +  +   LQL DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSF----LNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           +     +Y                +SF    +   K +D V   +   + I+LVGNK DL
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGNKKDL 121
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAK 154
             +R +S EEG+A +   N  F+E+SAK
Sbjct: 122 HMERVISYEEGKALAESWNAAFLESSAK 149

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 2   AAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDT 60
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 162

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 2   AAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 60
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 162

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 2/153 (1%)
Query: 3   PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQL 62
           P   L  YKLV +GD  VGK+++  +F    F + Y  TI   +L  T  ++++   L +
Sbjct: 12  PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTE-IDNQWAILDV 70
Query: 63  WDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVG 121
            DTAGQE F ++   Y+R             + SF +  ++   + R +      ++LV 
Sbjct: 71  LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 130
Query: 122 NKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           NK DL+  R+V+ ++G+  + + N+ +IETSAK
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 163

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 3/166 (1%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
            + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT
Sbjct: 18  GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 76
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKT 124
           AGQE + ++   Y+R              +SF + + + +++ R +   DV +VLVGNK 
Sbjct: 77  AGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKC 136
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           DL   R V  ++    ++   + FIETSAK    ++    T+ R I
Sbjct: 137 DL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 2   AAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDT 60
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  ++   ++E SAK
Sbjct: 120 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 162

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 81/150 (54%), Gaps = 2/150 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YK+V LG   VGK+++  +F+   F   Y  TI  DF  K + ++     L++ DTA
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E+F S+   YI+             +QSF +     D++ R +R   V ++LVGNK D
Sbjct: 60  GTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKA 155
           L  +R+VS  EG A + E    F+ETSAK+
Sbjct: 120 LESEREVSSSEGRALAEEWGCPFMETSAKS 149

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 3/167 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S + +YKLV +G   VGK+++  + + + F + Y  +I  D   K + ++  T  L + D
Sbjct: 5   SDMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIE-DSYRKQVVIDGETCLLDILD 63
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
           TAGQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK
Sbjct: 64  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 123
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
            DL   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 124 CDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
            + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT
Sbjct: 18  GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 76
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKT 124
           AG E + ++   Y+R              +SF +   + +++ R +   DV +VLVGNK 
Sbjct: 77  AGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKC 136
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           DL   R V  ++ +  +R   + FIETSAK
Sbjct: 137 DL-PSRTVDTKQAQDLARSYGIPFIETSAK 165

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 16/158 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   S  N   KW  EV+     +V I+LVGNK DL   
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 127 ---------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
                    +++  V  EEG   +  +    ++E SAK
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 160

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK ++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 16/158 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   S  N   KW  EV+     +V I+LVGNK DL   
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 127 ---------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
                    +++  V  EEG   +  +    ++E SAK
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 160

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 4   VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
           +SA+   K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+
Sbjct: 5   ISAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLF 63
Query: 64  DTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGN 122
           DTAGQE +  L P                   SF N   KW+ E+ T        +LVG 
Sbjct: 64  DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGT 122
Query: 123 KTDL------VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
           + DL      +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 166

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  D F   Y  T+  D  + ++ +  +   L L+DTAGQE 
Sbjct: 20  KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQED 78
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   +W+ E++ E   +V  +L+G + DL   
Sbjct: 79  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK-EYAPNVPFLLIGTQIDLRDD 137
Query: 127 ---------VEKRQVSIEEGEAKSRELN-VMFIETSA 153
                    ++++ + +E+G+  ++E+    ++E SA
Sbjct: 138 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA 174

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 2   AAIRKKLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVAD-IEVDGKQVELALWDT 60
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +    P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 61  AGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL 126
           DL
Sbjct: 120 DL 121

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Query: 3   PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQL 62
           P   L  YKLV +GD  VGK+++  +F    F   Y  TI   +L  T  ++++   L +
Sbjct: 12  PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHTE-IDNQWAILDV 70
Query: 63  WDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVG 121
            DTAGQE F ++   Y+R             + SF +  ++   + R +      ++LV 
Sbjct: 71  LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 130
Query: 122 NKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           NK DL+  R+V+ ++G+  + + N+ +IETSAK
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 163

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGN+ D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Query: 3   PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQL 62
           P   L  YKLV +GD  VGK+++  +F    F   Y  TI   +L  T  ++++   L +
Sbjct: 7   PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTE-IDNQWAILDV 65
Query: 63  WDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVG 121
            DTAGQE F ++   Y+R             + SF +  ++   + R +      ++LV 
Sbjct: 66  LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 125
Query: 122 NKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           NK DL+  R+V+ ++G+  + + N+ +IETSAK
Sbjct: 126 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 158

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 3/162 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YK++ LG   VGK+++    ++   ++  +A        +++ ++     L ++D   Q+
Sbjct: 3   YKVLLLGAPGVGKSALAR--IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQD 60
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLVE 128
             R L    +              + SF   S+   ++R  R +D V I+LVGNK+DLV 
Sbjct: 61  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
            R+VS++EG A +   +  FIETSA    N++     + R I
Sbjct: 121 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 3/168 (1%)
Query: 4   VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
           VS  + YK++ LG   VGK+++    ++   ++  +A        +++ ++     L ++
Sbjct: 2   VSDESVYKVLLLGAPGVGKSALAR--IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVY 59
Query: 64  DTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSD-VIIVLVGN 122
           D   Q+  R L    +              + SF   S+   ++R  R +D V I+LVGN
Sbjct: 60  DIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGN 119
Query: 123 KTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           K+DLV  R+VS++EG A +   +  FIETSA    N++     + R I
Sbjct: 120 KSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 73/154 (47%), Gaps = 8/154 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD +VGKT ++  F   +    Y  T+  +F S  M  ++    L LWDTAGQE 
Sbjct: 25  KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEE 83
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE- 128
           +  L P                 R SF N S KW  E++    +    VLVG K DL + 
Sbjct: 84  YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT-AKTVLVGLKVDLRKD 142
Query: 129 -KRQVSIEEGEAKSRELN-VMFIETS--AKAGFN 158
               V+ +EG+   ++L  V +IE S  AK G N
Sbjct: 143 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN 176

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 215
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF +  +KW  EVR     +  I+LVG K DL   
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 274
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  +I  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 215
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF +  +KW  EVR     +  I+LVG K DL   
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 274
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI   +  K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESY-RKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 215
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF +  +KW  EVR     +  I+LVG K DL   
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 274
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Query: 3   PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQL 62
           P   L  YKLV +GD  VGK+++  +F    F + Y  TI  D   K   ++++   L +
Sbjct: 12  PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIE-DSYRKHTEIDNQWAILDV 70
Query: 63  WDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVG 121
            DTAGQE F ++   Y+R             + SF +  ++   + R +      ++LV 
Sbjct: 71  LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 130
Query: 122 NKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           NK DL+  R+V+ ++G+  + + N+ +IETSAK
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 163

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + +  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 3/162 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YK++ LG   VGK+++    ++   ++  +A        +++ ++     L ++D   Q+
Sbjct: 8   YKVLLLGAPGVGKSALAR--IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQD 65
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLVE 128
             R L    +              + SF   S+   ++R  R +D V I+LVGNK+DLV 
Sbjct: 66  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 125
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
            R+VS++EG A +   +  FIETSA    N++     + R I
Sbjct: 126 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 73/154 (47%), Gaps = 8/154 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD +VGKT ++  F   +    Y  T+  +F S  M  ++    L LWDTAGQE 
Sbjct: 24  KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEE 82
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE- 128
           +  L P                 R SF N S KW  E++    +    VLVG K DL + 
Sbjct: 83  YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT-AKTVLVGLKVDLRKD 141
Query: 129 -KRQVSIEEGEAKSRELN-VMFIETS--AKAGFN 158
               V+ +EG+   ++L  V +IE S  AK G N
Sbjct: 142 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN 175

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT 
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTG 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV +GD + GKT ++      +F   Y  T+  ++++  + ++ R V L LWDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVAD-VEVDGRRVELALWDTAGQED 70
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P                   S  N   KWI EV       V I+LVG K DL   
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEV-LHFCQGVPIILVGCKVDLRND 129
Query: 130 RQ------------VSIEEGEAKSRELNVM-FIETSAKAGFNIK 160
            Q            V+ +EG++ + ++    + E SAK G+ ++
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVR 173

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD   GKTS++  F    F  +Y  T+   ++   + ++ + V L +WDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQDD 94
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P +                 SF N  ++W  EV       V I++VG KTDL + 
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLRKD 153
Query: 130 RQ------------VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
           +             V+   G+  +R +  V ++E SA+   N+ 
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVH 197

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G+E + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT 
Sbjct: 1   MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTT 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE   ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++     L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGEICLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
            QE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  AQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
            QE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  AQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 77/176 (43%), Gaps = 35/176 (19%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 71  FRSLIP-SYIRXXXXXXXXXXXX------------------XRQSFLNT-SKWIDEVRTE 110
           +  L P SY +                                 SF N  +KW  EVR  
Sbjct: 66  YDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR-H 124
Query: 111 RGSDVIIVLVGNKTDL------VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +  I+LVG K DL      +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 125 HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 180

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F +    TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK+D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 16/163 (9%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S +   K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+D
Sbjct: 2   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFD 60
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P                   SF N   KW+ E+ T        +LVG +
Sbjct: 61  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQ 119
Query: 124 TDL------VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
            DL      +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 120 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 162

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 16/158 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGLED 68
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   S  N   KW  EV+     +V I+LVGNK DL   
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 127 ---------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
                    +++  V  EEG   +  +    ++E SAK
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 16/163 (9%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S +   K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+D
Sbjct: 2   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFD 60
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P                   SF N   KW+ E+ T        +LVG +
Sbjct: 61  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQ 119
Query: 124 TDL------VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
            DL      +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 120 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 162

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 16/163 (9%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S +   K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+D
Sbjct: 1   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFD 59
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P                   SF N   KW+ E+ T        +LVG +
Sbjct: 60  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQ 118
Query: 124 TDL------VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
            DL      +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 119 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 161

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETXLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L   R V   + +  +R   + +IETSAK    ++    T+ R I
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 73
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 74  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 132
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 133 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 169

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 64
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 65  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 123
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 124 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 160

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVXIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 67
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 126
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 163

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 65
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 124
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 161

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 16/163 (9%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S +   K V +GD +VGK  ++  +  +KF + Y  T+  D  + T+ +      L L+D
Sbjct: 6   SGMQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFD 64
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P                   SF N   KW+ E+ T        +LVG +
Sbjct: 65  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQ 123
Query: 124 TDL------VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
            DL      +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 124 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 166

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 4/141 (2%)
Query: 22  KTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRX 81
           K+S++ RF+   F +TY  TI  D   + +  +     LQ+ DT G  +F ++    I  
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIE-DTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 82  XXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS--DVIIVLVGNKTDLVEKRQVSIEEGEA 139
                       +QS          +   +GS  D+ ++LVGNK D  + R+V   E +A
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQA 138
Query: 140 KSRELNVMFIETSAKAGFNIK 160
            ++E    F+ETSAK  +N+K
Sbjct: 139 VAQEWKCAFMETSAKMNYNVK 159

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ LG+  VGK+++   F   + DN ++     D   + + ++   V L ++D   Q 
Sbjct: 13  FKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 72
Query: 70  RFRSLIPSY-IRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLV 127
                +  + ++             R+SF    + +  +R  R   D+ ++LVGNK+DL 
Sbjct: 73  DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 132
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             R+VS+EEG   +  L+   IETSA    N +
Sbjct: 133 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTR 165

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 8/158 (5%)
Query: 4   VSALAKYKLVFLGDQSVGKTSIITRFMY--DKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           ++A  + K+  +G+ +VGK+++I+ F     KF   Y  T G++ +   + + D TV ++
Sbjct: 15  ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVE 74
Query: 62  LW--DTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWID---EVRTERGSDVI 116
           L+  DTAG + ++  I  Y                +SF +   W +     R +R   + 
Sbjct: 75  LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR 134
Query: 117 IVLVGNKTDLVEKR-QVSIEEGEAKSRELNVMFIETSA 153
            VLV NKTDL  +R QV ++  +  +    + F + SA
Sbjct: 135 AVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSA 172

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y   +  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLRDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAG E 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGLED 67
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 126
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 163

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +K  + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKLPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGLED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 18/167 (10%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           AP   +A+ KLV +GD   GKT+++     D +  TY  T+  ++ +  +  E++ V L 
Sbjct: 3   APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 61
Query: 62  LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS--KWIDEVRTERGSDVIIVL 119
           LWDT+G   + ++ P                 R   ++++  KW  E+  +      ++L
Sbjct: 62  LWDTSGSPYYDNVRP-LCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLL 119
Query: 120 VGNKTDL------------VEKRQVSIEEGEAKSRELNV-MFIETSA 153
           +G KTDL             ++  +S E+G A +++L   +++E SA
Sbjct: 120 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 166

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 18/167 (10%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           AP   +A+ KLV +GD   GKT+++     D +  TY  T+  ++ +  +  E++ V L 
Sbjct: 4   APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 62
Query: 62  LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS--KWIDEVRTERGSDVIIVL 119
           LWDT+G   + ++ P                 R   ++++  KW  E+  +      ++L
Sbjct: 63  LWDTSGSPYYDNVRP-LCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLL 120
Query: 120 VGNKTDL------------VEKRQVSIEEGEAKSRELNV-MFIETSA 153
           +G KTDL             ++  +S E+G A +++L   +++E SA
Sbjct: 121 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 167

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 18/167 (10%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           AP   +A+ KLV +GD   GKT+++     D +  TY  T+  ++ +  +  E++ V L 
Sbjct: 20  APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 78
Query: 62  LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS--KWIDEVRTERGSDVIIVL 119
           LWDT+G   + ++ P                 R   ++++  KW  E+  +      ++L
Sbjct: 79  LWDTSGSPYYDNVRP-LCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLL 136
Query: 120 VGNKTDL------------VEKRQVSIEEGEAKSRELNV-MFIETSA 153
           +G KTDL             ++  +S E+G A +++L   +++E SA
Sbjct: 137 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 183

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+  VGK+++   F   + D+ ++     D   + + ++   V L ++D   Q 
Sbjct: 3   FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62
Query: 70  RFRSLIPSY-IRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLV 127
                +  + ++             R+SF    + +  +R  R   D+ ++LVGNK+DL 
Sbjct: 63  DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             R+VS+EEG   +  L+   IETSA    N +
Sbjct: 123 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTR 155

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+  VGK+++   F   + D+ ++     D   + + ++   V L ++D   Q 
Sbjct: 24  FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83
Query: 70  RFRSLIPSY-IRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLV 127
                +  + ++             R+SF    + +  +R  R   D+ ++LVGNK+DL 
Sbjct: 84  DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 143
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             R+VS+EEG   +  L+   IETSA    N +
Sbjct: 144 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTR 176

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 20/161 (12%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L LWDT+G 
Sbjct: 28  KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 86
Query: 69  ERFRSLIP-SYIRXXXXXXXXXXXXXRQSFLNT--SKWIDEVRTERGSDVIIVLVGNKTD 125
             + ++ P SY               R   L++   KW  E++ E   +  ++LVG K+D
Sbjct: 87  PYYDNVRPLSY--PDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSD 143
Query: 126 -------LVE---KRQ--VSIEEGEAKSRELNVM-FIETSA 153
                  LVE    RQ  VS ++G   ++++    +IE SA
Sbjct: 144 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 184

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 20/161 (12%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L LWDT+G 
Sbjct: 7   KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 65
Query: 69  ERFRSLIP-SYIRXXXXXXXXXXXXXRQSFLNT--SKWIDEVRTERGSDVIIVLVGNKTD 125
             + ++ P SY               R   L++   KW  E++ E   +  ++LVG K+D
Sbjct: 66  PYYDNVRPLSY--PDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSD 122
Query: 126 -------LVE---KRQ--VSIEEGEAKSRELNVM-FIETSA 153
                  LVE    RQ  VS ++G   ++++    +IE SA
Sbjct: 123 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 20/161 (12%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L LWDT+G 
Sbjct: 23  KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 81
Query: 69  ERFRSLIP-SYIRXXXXXXXXXXXXXRQSFLNT--SKWIDEVRTERGSDVIIVLVGNKTD 125
             + ++ P SY               R   L++   KW  E++ E   +  ++LVG K+D
Sbjct: 82  PYYDNVRPLSY--PDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSD 138
Query: 126 -------LVE---KRQ--VSIEEGEAKSRELNVM-FIETSA 153
                  LVE    RQ  VS ++G   ++++    +IE SA
Sbjct: 139 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 179

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDN--TYQATIGIDFLSKTMYLEDRTVR---LQLWDT 65
           KL  +G+   GKT+++ +    K  +     AT+GID     + + D+  R   L +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSK-WIDEVRTERGSDVIIVLVGNKT 124
           AG+E F S  P +                Q+ ++  K W+  ++  R S   ++LVG   
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKA-RASSSPVILVGTHL 120
Query: 125 DLVEKRQ 131
           D+ +++Q
Sbjct: 121 DVSDEKQ 127

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDN--TYQATIGIDFLSKTMYLEDRTVR---LQLW 63
           + KL  +G+   GKT+++ +    K  +     AT+GID     + + D+  R   L +W
Sbjct: 2   RXKLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 64  DTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSK-WIDEVRTERGSDVIIVLVGN 122
           D AG+E F S  P +                Q+ ++  K W+  ++  R S   ++LVG 
Sbjct: 62  DFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKA-RASSSPVILVGT 120
Query: 123 KTDLVEKRQ 131
             D+ +++Q
Sbjct: 121 HLDVSDEKQ 129

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 16/157 (10%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L+ LG  + GKT+I+ +F  +  D T   T+G +   KT  LE R  +L +WD  GQ
Sbjct: 16  ELRLLMLGLDNAGKTTILKKFNGEDID-TISPTLGFNI--KT--LEHRGFKLNIWDVGGQ 70
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDLV 127
           +  RS   +Y               RQ   +  + +  +   ER +   +++  NK DL 
Sbjct: 71  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL- 129
Query: 128 EKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKGCS 163
                    G   S  +  V+ +++     + I+GCS
Sbjct: 130 --------PGALSSNAIREVLELDSIRSHHWCIQGCS 158

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L+ LG  + GKT+I+ +F  +  D T   T+G +   KT  LE R  +L +WD  GQ
Sbjct: 18  ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNI--KT--LEHRGFKLNIWDVGGQ 72
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDL 126
           +  RS   +Y               RQ   +  + +  +   ER +   +++  NK DL
Sbjct: 73  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L+ LG  + GKT+I+ +F  +  D T   T+G +   KT  LE R  +L +WD  GQ
Sbjct: 18  ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNI--KT--LEHRGFKLNIWDVGGQ 72
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDL 126
           +  RS   +Y               RQ   +  + +  +   ER +   +++  NK DL
Sbjct: 73  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 1  MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
          + P  +  + +L  +G Q  GKT+ +      +F+     T+G +    T       V +
Sbjct: 14 LVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTI 69
Query: 61 QLWDTAGQERFRSLIPSYIR 80
          +LWD  GQ RFRS+   Y R
Sbjct: 70 KLWDIGGQPRFRSMWERYCR 89

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 5/127 (3%)
Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           + P  +  + +L  +G Q  GKT+ +      +F      T+G +    T       V +
Sbjct: 14  LVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT----KGNVTI 69
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           ++WD  GQ RFRS+   Y R             R+    +   +  +  +     I VLV
Sbjct: 70  KIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLV 129
Query: 121 -GNKTDL 126
            GNK DL
Sbjct: 130 LGNKRDL 136

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 5/150 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
            L  LG +  GK+++  +F+  +F + Y   +  D  S    ++ + V L++ DTA  + 
Sbjct: 23  NLAILGRRGAGKSALTVKFLTKRFISEYDPNLE-DTYSSEETVDHQPVHLRVMDTADLDT 81
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVR---TERGSDVIIVLVGNKTDLV 127
            R+    Y+              RQSF ++S +++ +     E    +  +L+GNK D+ 
Sbjct: 82  PRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA 140
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGF 157
           + RQV+  EG A +     +F E SA   F
Sbjct: 141 QYRQVTKAEGVALAGRFGCLFFEVSACLDF 170

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	170
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	9e-96
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-95
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	6e-91
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-90
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-89
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	2e-89
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	2e-85
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-83
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-83
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	2e-76
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-74
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	3e-74
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	1e-72
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	2e-72
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	9e-72
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-70
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-70
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	4e-70
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-69
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-69
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-69
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	2e-69
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	3e-69
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	5e-69
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	5e-69
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	6e-69
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	7e-69
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	8e-69
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-68
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-68
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-68
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	2e-68
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	2e-68
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	3e-68
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	5e-68
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	6e-68
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-67
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	2e-67
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	4e-67
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	4e-67
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	5e-67
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	6e-67
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	2e-66
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	2e-66
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	4e-66
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	4e-65
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	5e-65
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	1e-64
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	5e-64
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	1e-63
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	2e-63
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	5e-63
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	1e-62
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	3e-62
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	8e-62
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	1e-61
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	8e-61
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	5e-60
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	1e-58
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	2e-58
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	5e-58
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	9e-58
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	1e-57
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	7e-57
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	2e-56
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	9e-56
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	1e-55
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	6e-55
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	2e-50
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	4e-48
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	4e-47
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	2e-42
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	2e-41
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	2e-41
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	2e-41
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	4e-41
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	4e-40
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	7e-40
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	9e-40
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	4e-38
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	7e-38
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	3e-37
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	1e-36
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	1e-24
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	2e-24
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	6e-17
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	3e-15
3llu_A	196	RAS-related GTP-binding protein C; structural geno	1e-14
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	3e-12
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	3e-12
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	4e-12
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	5e-12
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	7e-12
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	2e-11
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	2e-11
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	3e-11
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	3e-11
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	5e-11
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	6e-11
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	6e-11
2fh5_B	214	SR-beta, signal recognition particle receptor beta	2e-10
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	2e-10
1nrj_B	218	SR-beta, signal recognition particle receptor beta	8e-10
2ged_A	193	SR-beta, signal recognition particle receptor beta	8e-10
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	3e-08
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	1e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-07
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	9e-04

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  273 bits (701), Expect = 9e-96
 Identities = 131/154 (85%), Positives = 144/154 (93%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA
Sbjct: 12  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 71

Query: 67  GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQERFRSLIPSYIRDS+VAVVVYD+ +  SF  TSKWID+VRTERGSDVII+LVGNKTDL
Sbjct: 72  GQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL 131

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            +KRQVS EEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 132 SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 165

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  274 bits (704), Expect = 1e-95
 Identities = 130/156 (83%), Positives = 145/156 (92%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 12  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 71

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAG ERFRSLIPSYIRDS+VAVVVYD+ +  SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 72  TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 131

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 132 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 167

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  262 bits (671), Expect = 6e-91
 Identities = 61/160 (38%), Positives = 98/160 (61%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           +   SA+ + K+  LGD  VGK+SI+ RF+ D FD+    TIG  F++KT+   +   + 
Sbjct: 15  VPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKF 74

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
            +WDTAGQERF SL P Y R S+ AV+VYD+  + SF    KW+ E++     ++++ + 
Sbjct: 75  LIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIA 134

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           GNK DL + R+V +++ +  +  +  + +ETSAK   NI+
Sbjct: 135 GNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIE 174

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  260 bits (668), Expect = 1e-90
 Identities = 62/152 (40%), Positives = 103/152 (67%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
             KLV LGD   GK+S++ RF+ D+F    ++TIG  F S+T+ + D TV+ ++WDTAGQ
Sbjct: 12  NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 71

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           ER+ SL P Y R ++ A++V+DV ++ SF    KW+ E++ +   ++++ L GNK+DL++
Sbjct: 72  ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD 131

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            R+V+ E+ +  ++E  + F+ETSAK   N+K
Sbjct: 132 ARKVTAEDAQTYAQENGLFFMETSAKTATNVK 163

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  258 bits (661), Expect = 1e-89
 Identities = 60/156 (38%), Positives = 94/156 (60%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           SAL + K+  LGD  VGK+SI+ RF+ D FD     TIG  F++KT+  ++   +  +WD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAG ERFR+L P Y R S+ A++VYD+   ++F     W+ E+R      +++ + GNK 
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKC 121

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL + R+V   + +  +  ++ +F+ETSAK   NI 
Sbjct: 122 DLTDVREVMERDAKDYADSIHAIFVETSAKNAININ 157

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  257 bits (659), Expect = 2e-89
 Identities = 62/156 (39%), Positives = 105/156 (67%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WD
Sbjct: 2   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQER+ SL P Y R +  A+VVYD+ + +SF     W+ E++ +   +++I L GNK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL  KR V  +E ++ + + +++F+ETSAK   N+ 
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVN 157

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  247 bits (633), Expect = 2e-85
 Identities = 61/151 (40%), Positives = 96/151 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R+  +KF++ +  T+G  FL+K + +  + V L +WDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RF +L P Y RDS+ A++VYD+    SF     W+ E+R   G+++ + +VGNK DL ++
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R VSI+E E+ +  +      TSAK    I+
Sbjct: 127 RHVSIQEAESYAESVGAKHYHTSAKQNKGIE 157

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  242 bits (621), Expect = 1e-83
 Identities = 57/151 (37%), Positives = 86/151 (56%), Gaps = 1/151 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K+V +G+ +VGK+S+I R+    F   Y+ TIG+DFL + + + D  VRL LWDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
            F ++  +Y R +   V+V+    R+SF   S W ++V  E   D+   LV NK DL++ 
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDD 124

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             +  EE E  ++ L + F  TS K   N+ 
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVS 155

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  243 bits (622), Expect = 1e-83
 Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 4/158 (2%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAG 67
           + K+V LGD + GKTS+ T F  + F   Y+ TIG+DF  + + L     V LQ+WD  G
Sbjct: 6   QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGG 65

Query: 68  QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKW---IDEVRTERGSDVIIVLVGNKT 124
           Q     ++  YI  +   ++VYD+ + QSF N   W   + +V  E  +  ++ LVGNK 
Sbjct: 66  QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKI 125

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGC 162
           DL   R +  E+     +E        SAK G ++  C
Sbjct: 126 DLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC 163

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  226 bits (577), Expect = 2e-76
 Identities = 58/155 (37%), Positives = 91/155 (58%), Gaps = 4/155 (2%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K + ++DR V +Q+WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRT----ERGSDVIIVLVGNKTD 125
           RF+SL  ++ R +   V+V+DV +  +F     W DE           +   V++GNK D
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           L  ++  +         + N+ + ETSAK   N++
Sbjct: 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  220 bits (564), Expect = 1e-74
 Identities = 64/157 (40%), Positives = 90/157 (57%), Gaps = 6/157 (3%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YK+V  GD +VGK+S + R   ++F     AT+G+DF  KT+ ++     LQLWDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV-- 127
           RFRS+  SY R +   +++YDV   +SFLN  +W+D +       V I+LVGNK D+   
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148

Query: 128 ----EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
                ++ V    GE  +     +F ETSAK G NI 
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIV 185

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  220 bits (562), Expect = 3e-74
 Identities = 67/152 (44%), Positives = 105/152 (69%), Gaps = 1/152 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD SVGKT ++ RF    F     +TIG+DF  KT+ ++ + V+LQ+WDTAGQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R ++ A++ YD+  R SFL+   WI++VR   GS+++ +L+GNK+DL E 
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149

Query: 130 RQVSIEEGEAKSRELNVM-FIETSAKAGFNIK 160
           R+VS+ E ++ +   +++  IETSAK   N++
Sbjct: 150 REVSLAEAQSLAEHYDILCAIETSAKDSSNVE 181

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  215 bits (548), Expect = 1e-72
 Identities = 69/157 (43%), Positives = 102/157 (64%), Gaps = 3/157 (1%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           +   KLV LG+ +VGK+SI+ RF+ + F    + TIG  FL++ + + + TV+ ++WDTA
Sbjct: 1   VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60

Query: 67  GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQERF SL P Y R++  A+VVYDV   QSF+    W+ E+  +   D+II LVGNK D 
Sbjct: 61  GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDX 120

Query: 127 VE---KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           ++   +R+V+ EEGE  + E  ++F ETSAK G N+ 
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVN 157

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  216 bits (552), Expect = 2e-72
 Identities = 44/151 (29%), Positives = 82/151 (54%), Gaps = 3/151 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +F  L   Y   +  A++++DV SR ++ N   W  ++      ++ IVL GNK D+ ++
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 134

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           +     +     R+ N+ + + SAK+ +N +
Sbjct: 135 KVK--AKSIVFHRKKNLQYYDISAKSNYNFE 163

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  214 bits (546), Expect = 9e-72
 Identities = 48/171 (28%), Positives = 88/171 (51%), Gaps = 11/171 (6%)

Query: 1   MAPVSALAKY--KLVFLGDQSVGKTSIITRFMY--DKFDNTYQATIGIDFLSKTMYLEDR 56
           + P+   A    K+  +G+ +VGK+++I+ F     KF   Y  T G++ +   + + D 
Sbjct: 10  VKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDT 69

Query: 57  TVRLQLW--DTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-- 112
           TV ++L+  DTAG + ++  I  Y      A++V+DV+S +SF +   W + +++ R   
Sbjct: 70  TVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDR 129

Query: 113 -SDVIIVLVGNKTDLVEKR-QVSIEEGEAKSRELNVMFIETSAKA-GFNIK 160
              +  VLV NKTDL  +R QV ++  +  +    + F + SA   G +  
Sbjct: 130 ERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDAD 180

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  210 bits (537), Expect = 1e-70
 Identities = 60/151 (39%), Positives = 98/151 (64%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++LQ+WDTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +   +++YD+A+++SF     W  +++T    +  ++LVGNK DL ++
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  E+G   + +L   F E SAK   N+K
Sbjct: 143 RVVPAEDGRRLADDLGFEFFEASAKENINVK 173

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  211 bits (540), Expect = 1e-70
 Identities = 46/152 (30%), Positives = 81/152 (53%), Gaps = 1/152 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIG-IDFLSKTMYLEDRTVRLQLWDTAGQ 68
           YK+  +GD  VGKT+ I R +  +F+  Y AT+G ++     +  +   ++  +WDTAGQ
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           E+   L   Y   +S A++ +DV SR +  N ++W+ E +   G++  IV+  NK D+  
Sbjct: 72  EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           ++++S +      +  N  + E SAK   N  
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFG 163

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  208 bits (532), Expect = 4e-70
 Identities = 39/155 (25%), Positives = 76/155 (49%), Gaps = 2/155 (1%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
             +K++ +G+  VGK+++   F   + D+ ++     D   + + ++   V L ++D   
Sbjct: 1   GVFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWE 60

Query: 68  QERFRSLIPS-YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTD 125
           Q      +    ++     ++V+ V  R+SF    + +  +R  R    + ++LVGNK+D
Sbjct: 61  QGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSD 120

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           L   R+VS+EEG   +  L+   IETSA    N +
Sbjct: 121 LARSREVSLEEGRHLAGTLSCKHIETSAALHHNTR 155

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  208 bits (532), Expect = 1e-69
 Identities = 63/151 (41%), Positives = 96/151 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+  VGK+ ++ RF  D + N Y +TIG+DF  KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R S   ++VYDV  ++SF     W+ E+     S V+ +LVGNK DL +K
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  +  +  +    + F+ETSA    N++
Sbjct: 129 RVVEYDVAKEFADANKMPFLETSALDSTNVE 159

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  207 bits (530), Expect = 1e-69
 Identities = 61/158 (38%), Positives = 91/158 (57%), Gaps = 7/158 (4%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQ 68
            K++ LGD  VGKTS++ R++ DK+   Y+ATIG DFL+K + ++ D+   +Q+WDTAGQ
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRT----ERGSDVIIVLVGNKT 124
           ERF+SL  ++ R +   V+VYDV +  SF N   W DE               V++GNK 
Sbjct: 69  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 128

Query: 125 DLVE-KRQVSIEEGEAKSRELNVM-FIETSAKAGFNIK 160
           D  E K+ VS +  +  ++ L  +    TSAK   N+ 
Sbjct: 129 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVD 166

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  207 bits (530), Expect = 1e-69
 Identities = 55/151 (36%), Positives = 104/151 (68%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +  A++VYD+A   ++ N  +W+ E+R    S+++I+LVGNK+DL   
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  +E  A + +  + FIETSA    N++
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVE 180

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  208 bits (531), Expect = 2e-69
 Identities = 62/151 (41%), Positives = 97/151 (64%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R +   +VVYDV  ++SF N  +W+ E+      +V  +LVGNK DL  K
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           + V     +  +  L + F+ETSAK   N++
Sbjct: 154 KVVDYTTAKEFADSLGIPFLETSAKNATNVE 184

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  206 bits (527), Expect = 3e-69
 Identities = 55/151 (36%), Positives = 97/151 (64%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   KF      TIG++F ++ + +  + ++LQ+WDTAGQE
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R ++ A++VYD+  R ++ + S W+ + R     + +I+L+GNK DL  +
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 135

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V+ EE +  + E  ++F+E SAK G N++
Sbjct: 136 RDVTYEEAKQFAEENGLLFLEASAKTGENVE 166

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  206 bits (527), Expect = 5e-69
 Identities = 57/151 (37%), Positives = 98/151 (64%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G+   GK+ ++ +F+  KF +    TIG++F SK + +  + V+LQ+WDTAGQE
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R ++ A++VYD+ SR+++   + W+ + R     +++I+L GNK DL   
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 130

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R+V+  E    ++E  +MF+ETSA  G N++
Sbjct: 131 REVTFLEASRFAQENELMFLETSALTGENVE 161

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  207 bits (528), Expect = 5e-69
 Identities = 63/151 (41%), Positives = 95/151 (62%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ +    V+LQ+WDTAGQE
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R ++  ++ YD+   +SF    +W+ E+     + VI VLVGNK DL E+
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 146

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R+VS +  E  S   ++ ++ETSAK   N++
Sbjct: 147 REVSQQRAEEFSEAQDMYYLETSAKESDNVE 177

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  206 bits (527), Expect = 6e-69
 Identities = 51/151 (33%), Positives = 98/151 (64%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT++++RF  ++F +  + TIG++F ++T+ L    V+ Q+WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +  A++V+D+   Q++    +W+ E+     + ++++LVGNK+DL + 
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R+V  EE    +    ++F+ETSA    N++
Sbjct: 146 REVPTEEARMFAENNGLLFLETSALDSTNVE 176

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  206 bits (527), Expect = 7e-69
 Identities = 57/151 (37%), Positives = 101/151 (66%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G    GK+ ++ +F+ +KF      TIG++F S+ + +  +TV+LQ+WDTAGQE
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R ++ A++VYD+ SR+++ + + W+ + RT    +++++L GNK DL  +
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R+V+  E    ++E  +MF+ETSA  G N++
Sbjct: 146 REVTFLEASRFAQENELMFLETSALTGENVE 176

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  207 bits (528), Expect = 8e-69
 Identities = 56/161 (34%), Positives = 103/161 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++T+ +E + ++ Q+WDTAGQE
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +  A++VYD++   S+ N + W+ E+R     +V + L+GNK+DL   
Sbjct: 74  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL 133

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           R V  EE +  ++E  ++F ETSA    N+      +   I
Sbjct: 134 RAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTI 174

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  205 bits (525), Expect = 1e-68
 Identities = 62/151 (41%), Positives = 97/151 (64%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R +   +VVYDV  ++SF N  +W+ E+      +V  +LVGNK DL  K
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           + V     +  +  L + F+ETSAK   N++
Sbjct: 137 KVVDYTTAKEFADSLGIPFLETSAKNATNVE 167

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  205 bits (525), Expect = 1e-68
 Identities = 57/151 (37%), Positives = 105/151 (69%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R +  +Y R +  A++VYD+A   ++ N  +W+ E+R    S+++I+LVGNK+DL   
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  +E  A + + N+ FIETSA    N++
Sbjct: 126 RAVPTDEARAFAEKNNLSFIETSALDSTNVE 156

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  205 bits (523), Expect = 1e-68
 Identities = 65/151 (43%), Positives = 103/151 (68%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  +Y R +   ++VYD+ + +SF N   WI  +     +DV  +++GNK D+ +K
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           RQVS E GE  + +  + F+ETSAKA  N++
Sbjct: 129 RQVSKERGEKLALDYGIKFMETSAKANINVE 159

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  205 bits (524), Expect = 2e-68
 Identities = 57/151 (37%), Positives = 94/151 (62%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++LQ+WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +   +++YD+ + +SF     W  +++T    +  ++LVGNK D+ ++
Sbjct: 69  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 128

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R VS E G   +  L   F E SAK   N+K
Sbjct: 129 RVVSSERGRQLADHLGFEFFEASAKDNINVK 159

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  205 bits (523), Expect = 2e-68
 Identities = 59/151 (39%), Positives = 105/151 (69%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
            FRS+  SY R ++ A++VYD+  R++F + + W+++ R    S+++I+L+GNK+DL  +
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 141

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  EEGEA +RE  ++F+ETSAK   N++
Sbjct: 142 RDVKREEGEAFAREHGLIFMETSAKTACNVE 172

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  204 bits (522), Expect = 3e-68
 Identities = 57/151 (37%), Positives = 97/151 (64%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  ++ V+LQ+WDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +   +++YD+ + +SF     W  +++T    +  ++LVGNK D+ E+
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  E+G+  + +L   F E SAK   +++
Sbjct: 144 RVVPTEKGQLLAEQLGFDFFEASAKENISVR 174

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  204 bits (521), Expect = 5e-68
 Identities = 61/190 (32%), Positives = 95/190 (50%), Gaps = 40/190 (21%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTV--------- 58
           + YK V LG+ SVGK+SI+ R   D F      TIG  F +  + L D  +         
Sbjct: 6   SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKN 65

Query: 59  ----------------------------RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90
                                       +  +WDTAGQER+ S++P Y R ++ A+VV+D
Sbjct: 66  NNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFD 125

Query: 91  VASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIE 150
           +++  +      W+++++    S+ II+LV NK D   K QV I E +  +++ N++FI+
Sbjct: 126 ISNSNTLDRAKTWVNQLKIS--SNYIIILVANKIDK-NKFQVDILEVQKYAQDNNLLFIQ 182

Query: 151 TSAKAGFNIK 160
           TSAK G NIK
Sbjct: 183 TSAKTGTNIK 192

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  203 bits (519), Expect = 6e-68
 Identities = 63/161 (39%), Positives = 99/161 (61%), Gaps = 1/161 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+S++ RF  + F  +Y  TIG+DF  +T+ +    V+LQ+WDTAGQE
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  +Y R +   +VVYDV S +SF+N  +W+ E+  +   DV  +LVGNK D  E+
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEIN-QNCDDVCRILVGNKNDDPER 128

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           + V  E+    + ++ +   ETSAK   N++     I  L+
Sbjct: 129 KVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  202 bits (516), Expect = 1e-67
 Identities = 65/161 (40%), Positives = 105/161 (65%), Gaps = 1/161 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQ+WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  +Y R +   ++VYD+   ++F N  +W   V      +  ++LVGNK+D+ E 
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ET 122

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           R V+ ++GEA ++EL + FIE+SAK   N+     T+ +LI
Sbjct: 123 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  202 bits (516), Expect = 2e-67
 Identities = 64/162 (39%), Positives = 101/162 (62%), Gaps = 1/162 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +K++ +GD  VGKT ++ RF    F   T+ +T+GIDF +K + ++   V+LQ+WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           ERFRS+  +Y RD+   +++YDV ++ SF N   W+ E+      DV ++L+GNK D   
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           +R V  E+GE  ++E  + F+ETSAK G N+      I + +
Sbjct: 131 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  202 bits (515), Expect = 4e-67
 Identities = 56/162 (34%), Positives = 97/162 (59%), Gaps = 1/162 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            +++ +G + VGKTS++ RF  D F    ++T+G+DF  KT+ L  + +RLQ+WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RF S+  +Y R +   ++VYD+  +++F +  KW+  +      D  ++LVGNK D    
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD 146

Query: 130 RQVSIEEGEAKSRELN-VMFIETSAKAGFNIKGCSPTIRRLI 170
           R+++ ++GE  ++++  + F E SAK  FN+      +   I
Sbjct: 147 REITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  202 bits (515), Expect = 4e-67
 Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 2/153 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+  VGK+++   F   + D+ ++     D   + + ++   V L ++D   Q 
Sbjct: 24  FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83

Query: 70  RFRSLIPS-YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLV 127
                +    ++     ++V+ V  R+SF    + +  +R  R    + ++LVGNK+DL 
Sbjct: 84  DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 143

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             R+VS+EEG   +  L+   IETSA    N +
Sbjct: 144 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTR 176

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  202 bits (516), Expect = 5e-67
 Identities = 67/161 (41%), Positives = 105/161 (65%), Gaps = 1/161 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQLWDTAGQE
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  +Y R +   ++VYDV   ++F N  +W   V      +  ++LVGNK+D+ E 
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ET 139

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           R V+ ++GEA ++EL + FIE+SAK   N+     T+ +LI
Sbjct: 140 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  200 bits (512), Expect = 6e-67
 Identities = 65/164 (39%), Positives = 96/164 (58%), Gaps = 8/164 (4%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA  S+L  +K++ LGD  VGK+S++ R++ +KFD     TIG++FL+K + ++   V +
Sbjct: 1   MAGKSSL--FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTM 58

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRT----ERGSDVI 116
           Q+WDTAGQERFRSL   + R S   ++ + V   QSF N S W  E       +      
Sbjct: 59  QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP 118

Query: 117 IVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNI 159
            V++GNK D+  +RQVS EE +A  R+     + ETSAK   N+
Sbjct: 119 FVILGNKIDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  200 bits (510), Expect = 2e-66
 Identities = 63/152 (41%), Positives = 97/152 (63%), Gaps = 2/152 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ +G+  VGK+S++ RF  D FD    ATIG+DF  KT+ ++    +L +WDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVE 128
           RFR+L PSY R +   ++VYDV  R +F+    W++E+ T    +D++ +LVGNK D  E
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK-E 134

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            R+V   EG   +R+ +++FIE SAK    ++
Sbjct: 135 NREVDRNEGLKFARKHSMLFIEASAKTCDGVQ 166

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  199 bits (509), Expect = 2e-66
 Identities = 55/151 (36%), Positives = 89/151 (58%), Gaps = 2/151 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT +  RF   +F +  +ATIG+DF  + + ++   +++QLWDTAGQE
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80

Query: 70  RFR-SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLV 127
           RFR S++  Y R+    V VYD+ +  SF +   WI+E +     +D+  +LVGNK DL 
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158
              QV  +  +  +   ++   ETSAK   +
Sbjct: 141 SAIQVPTDLAQKFADTHSMPLFETSAKNPND 171

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  200 bits (510), Expect = 4e-66
 Identities = 63/172 (36%), Positives = 100/172 (58%), Gaps = 11/172 (6%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVR 59
            KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +    +           V 
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85

Query: 60  LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRT-ERGSDVIIV 118
           LQLWDTAGQERFRSL  ++ RD+   ++++D+ S+QSFLN   W+ +++      +  IV
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145

Query: 119 LVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L+GNK DL ++R+V+  +    + +  + + ETSA  G N++    T+  LI
Sbjct: 146 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  197 bits (502), Expect = 4e-65
 Identities = 61/162 (37%), Positives = 93/162 (57%), Gaps = 11/162 (6%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE----------DRTVR 59
            K + LGD  VGKTS++ ++   KF++ +  T+GIDF  K +              + + 
Sbjct: 12  IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71

Query: 60  LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS-DVIIV 118
           LQLWDTAG ERFRSL  ++ RD+   ++++D+ + QSFLN   WI +++    S +  IV
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131

Query: 119 LVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           L GNK+DL ++R V  EE    + +  + + ETSA  G NI 
Sbjct: 132 LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNIS 173

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  195 bits (499), Expect = 5e-65
 Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 3/154 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
            Y++   G   VGK+S++ RF+   F  +Y  T+   +  + +  +     LQ+ DT G 
Sbjct: 3   DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGS 61

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS--DVIIVLVGNKTDL 126
            +F ++    I      ++VY + SRQS        +++   +G    + I+LVGNK D 
Sbjct: 62  HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE 121

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
              R+V   E EA +R     F+ETSAK   N+K
Sbjct: 122 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVK 155

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  194 bits (496), Expect = 1e-64
 Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 3/154 (1%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           + YK++ LG   VGK+++   F     D       G  +  +++ ++     L ++D   
Sbjct: 1   SVYKVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWE 58

Query: 68  QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDL 126
           Q+  R L    +      V+VY V  + SF   S+   ++R  R +D V I+LVGNK+DL
Sbjct: 59  QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL 118

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           V  R+VS++EG A +   +  FIETSA    N++
Sbjct: 119 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQ 152

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  193 bits (493), Expect = 5e-64
 Identities = 38/166 (22%), Positives = 78/166 (46%), Gaps = 15/166 (9%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNT--YQATIGIDFLSKTMYLED---RTVRLQLW 63
           + KL+ +G+   GKT+++ + M  K  +     AT+GID     + + D   R + L +W
Sbjct: 2   RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61

Query: 64  DTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSK-WIDEVRTERGSDVIIVLVGN 122
           D AG+E F S  P ++   ++ + VYD++  Q+ ++  K W+  ++  R S   ++LVG 
Sbjct: 62  DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIK-ARASSSPVILVGT 120

Query: 123 KTDLVEKRQ---VSIEEGEAKSRELNVMFI-----ETSAKAGFNIK 160
             D+ +++Q      +  +    +     I       + +    + 
Sbjct: 121 HLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALA 166

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  193 bits (493), Expect = 1e-63
 Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 2/157 (1%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
             +   K+V LG + VGKTS+  +F+  +F   Y  T+   + SK + L      L L D
Sbjct: 20  PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVD 78

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNK 123
           TAGQ+ +  L  S+I      V+VY V S  SF        ++    G   V +VLVGNK
Sbjct: 79  TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNK 138

Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            DL  +R+V   EG+  +      F+E+SA+     +
Sbjct: 139 ADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQ 175

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  191 bits (489), Expect = 2e-63
 Identities = 50/153 (32%), Positives = 92/153 (60%), Gaps = 2/153 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
            +K++ +G   VGK+++  +FMYD+F   Y+ T    +  K + L+   V++ + DTAGQ
Sbjct: 18  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQ 76

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLV 127
           E + ++  +Y R     + V+ +   +SF  T+ + +++   +  + V  +LVGNK+DL 
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           +KRQVS+EE + ++ + NV ++ETSAK   N+ 
Sbjct: 137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVD 169

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  190 bits (486), Expect = 5e-63
 Identities = 52/155 (33%), Positives = 95/155 (61%), Gaps = 2/155 (1%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           +LA +K++ +G   VGK+++  +FMYD+F   Y+ T    +  K + L+   V++ + DT
Sbjct: 1   SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDT 59

Query: 66  AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKT 124
           AGQE + ++  +Y R     + V+ +   +SF  T+ + +++   +  + V  +LVGNK+
Sbjct: 60  AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 119

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           DL +KRQVS+EE + ++ + NV ++ETSAK   N+
Sbjct: 120 DLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANV 154

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  191 bits (486), Expect = 1e-62
 Identities = 48/166 (28%), Positives = 88/166 (53%), Gaps = 9/166 (5%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRF--MYDKFDNTYQATIGIDFLSKTMYLEDRTV 58
           ++  S    Y++V +G+Q VGK+++   F  ++D  D+  +     D   +T+ ++  + 
Sbjct: 29  ISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLG-EDTYERTLMVDGESA 87

Query: 59  R---LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD- 114
               L +W+  G+  +  L    ++     ++VY +  R SF   S+   ++R  R ++ 
Sbjct: 88  TIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED 145

Query: 115 VIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           + I+LVGNK+DLV  R+VS+ EG A +   +  FIETSA    N+K
Sbjct: 146 IPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 191

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  188 bits (480), Expect = 3e-62
 Identities = 53/155 (34%), Positives = 88/155 (56%), Gaps = 2/155 (1%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YK+V LG   VGK+++  +F+   F   Y  TI  DF  K + ++     L++ DTA
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTA 59

Query: 67  GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTD 125
           G E+F S+   YI++    ++VY + ++QSF +     D++   +  + V ++LVGNK D
Sbjct: 60  GTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           L  +R+VS  EG A + E    F+ETSAK+   + 
Sbjct: 120 LESEREVSSSEGRALAEEWGCPFMETSAKSKTMVD 154

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  188 bits (479), Expect = 8e-62
 Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 5/161 (3%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           M         K+  LG +SVGK+S+  +F+  +F ++Y  TI   F +K + +  +   L
Sbjct: 1   MPQSK---SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHL 56

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVL 119
           QL DTAGQ+ +     +Y  D +  ++VY V S +SF        ++    G   + I+L
Sbjct: 57  QLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIML 116

Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           VGNK DL  +R +S EEG+A +   N  F+E+SAK      
Sbjct: 117 VGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAV 157

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  187 bits (477), Expect = 1e-61
 Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 4/158 (2%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++A Y++V LGD  VGKTS+ + F   +  + +   +G D   +T+ ++     L + DT
Sbjct: 1   SMALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDT 59

Query: 66  AGQERFRSLIP--SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGN 122
              E+        S ++  S  V+VY +A R SF + S+   ++R    +D V I+LVGN
Sbjct: 60  WEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGN 119

Query: 123 KTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           K DL   R+VS+EEG A +   +  FIETSA    N+ 
Sbjct: 120 KADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVA 157

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  186 bits (474), Expect = 8e-61
 Identities = 50/152 (32%), Positives = 92/152 (60%), Gaps = 2/152 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G   VGK+++  +FMYD+F   Y+ T    +  K + L+   V++ + DTAGQE
Sbjct: 15  HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQE 73

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLVE 128
            + ++  +Y R     + V+ +   +SF  T+ + +++   +  + V  +LVGNK+DL +
Sbjct: 74  DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 133

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           KRQVS+EE + ++ + NV ++ETSAK   N+ 
Sbjct: 134 KRQVSVEEAKNRAEQWNVNYVETSAKTRANVD 165

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  183 bits (467), Expect = 5e-60
 Identities = 53/160 (33%), Positives = 80/160 (50%), Gaps = 3/160 (1%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           M P      +KLV +G   VGK+++  +F+   F + Y  TI  D  +K   ++    RL
Sbjct: 2   MDP-PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARL 59

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVL 119
            + DTAGQE F ++   Y+R     ++V+ +  RQSF    K   ++   +  D   +VL
Sbjct: 60  DILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVL 119

Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           VGNK DL  +RQV   E  A     +V + E SAK   N+
Sbjct: 120 VGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNV 159

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  180 bits (458), Expect = 1e-58
 Identities = 49/154 (31%), Positives = 84/154 (54%), Gaps = 2/154 (1%)

Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
            P   L  YKLV +GD  VGK+++  +F    F + Y  TI  D   K   ++++   L 
Sbjct: 11  VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILD 69

Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLV 120
           + DTAGQE F ++   Y+R     ++VY V  + SF +  ++   +   +  +   ++LV
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
            NK DL+  R+V+ ++G+  + + N+ +IETSAK
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 163

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  180 bits (458), Expect = 2e-58
 Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 4/153 (2%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++V  G   VGK+S++ RF+   F +TY  TI   +  + +  +     LQ+ DT G  
Sbjct: 9   YRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSH 67

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVR--TERGSDVIIVLVGNKTDLV 127
           +F ++    I      ++V+ V S+QS          +        D+ ++LVGNK D  
Sbjct: 68  QFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET 127

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           + R+V   E +A ++E    F+ETSAK  +N+K
Sbjct: 128 Q-REVDTREAQAVAQEWKCAFMETSAKMNYNVK 159

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  178 bits (454), Expect = 5e-58
 Identities = 48/171 (28%), Positives = 88/171 (51%), Gaps = 7/171 (4%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRT---VRL 60
             +  Y++V +G+Q VGK+++   F       ++    +G D   +T+ ++  +   + L
Sbjct: 2   FGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILL 61

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVL 119
            +W+  G+  +  L    ++     ++VY +  R SF   S+   ++R  R ++ + I+L
Sbjct: 62  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119

Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           VGNK+DLV  R+VS+ EG A +   +  FIETSA    N+K     I R +
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  177 bits (451), Expect = 9e-58
 Identities = 45/154 (29%), Positives = 85/154 (55%), Gaps = 3/154 (1%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F +    TI   +  K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTA 59

Query: 67  GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ ++++  + SD V +VLVGNK+D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD 119

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           L   R V   + +  +R   + +IETSAK    +
Sbjct: 120 L-AARTVESRQAQDLARSYGIPYIETSAKTRQGV 152

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  187 bits (476), Expect = 1e-57
 Identities = 34/162 (20%), Positives = 68/162 (41%), Gaps = 12/162 (7%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL--------EDRTV 58
           L + K+  +GD   GKTS++ + + + FD     T G++ ++K            E +  
Sbjct: 39  LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKEC 98

Query: 59  RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV 118
               WD  GQE   +    ++  SSV +++ D    ++  N   W+  +  + G    ++
Sbjct: 99  LFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDS---RTDSNKHYWLRHIE-KYGGKSPVI 154

Query: 119 LVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           +V NK D      +  ++   +   +   F   S K G  ++
Sbjct: 155 VVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVE 196

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  175 bits (447), Expect = 7e-57
 Identities = 46/157 (29%), Positives = 85/157 (54%), Gaps = 3/157 (1%)

Query: 4   VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
              + +YKLV +G   VGK+++  + + + F + Y  TI   +  K + ++  T  L + 
Sbjct: 16  FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDIL 74

Query: 64  DTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGN 122
           DTAGQE + ++   Y+R     + V+ + + +SF + + + ++++  + SD V +VLVGN
Sbjct: 75  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGN 134

Query: 123 KTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           K DL   R V  ++    ++   + FIETSAK    +
Sbjct: 135 KCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGV 170

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  174 bits (444), Expect = 2e-56
 Identities = 46/155 (29%), Positives = 84/155 (54%), Gaps = 3/155 (1%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
              +YKLV +G   VGK+++  + + + F + Y  TI   +  K + ++  T  L + DT
Sbjct: 1   GSTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDT 59

Query: 66  AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKT 124
           AGQE + ++   Y+R     + V+ + + +SF +   + ++++  + S+ V +VLVGNK 
Sbjct: 60  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKC 119

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           DL   R V  ++ +  +R   + FIETSAK    +
Sbjct: 120 DL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGV 153

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  172 bits (438), Expect = 9e-56
 Identities = 46/153 (30%), Positives = 89/153 (58%), Gaps = 3/153 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YKLV LG   VGK+++  +F+   F   Y  TI   +  K + ++ +   L++ DTAG 
Sbjct: 3   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGT 61

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLV 127
           E+F ++   Y+++     +VY + ++ +F +     +++   + ++ V ++LVGNK DL 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121

Query: 128 EKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNI 159
           ++R V  E+G+  +R+  N  F+E+SAK+  N+
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINV 154

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  172 bits (439), Expect = 1e-55
 Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 3/147 (2%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KL   G   VGK++++ RF+  +F   Y  T+   +      ++D  V +++ DTAGQ
Sbjct: 28  EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQ 86

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLV 127
           E        ++R     V+VYD+  R SF       + +   +    V ++LVGNK DL 
Sbjct: 87  EDTIQR-EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 145

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAK 154
             RQVS EEGE  + EL   F E SA 
Sbjct: 146 HSRQVSTEEGEKLATELACAFYECSAC 172

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  170 bits (434), Expect = 6e-55
 Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 5/149 (3%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +  L  LG +  GK+++  +F+  +F + Y   +   + S    ++ + V L++ DTA  
Sbjct: 21  EVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADL 79

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKW---IDEVRTERGSDVIIVLVGNKTD 125
           +  R+    Y+  +   +VVY V SRQSF ++S +   +     E    +  +L+GNK D
Sbjct: 80  DTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLD 138

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           + + RQV+  EG A +     +F E SA 
Sbjct: 139 MAQYRQVTKAEGVALAGRFGCLFFEVSAC 167

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  158 bits (403), Expect = 2e-50
 Identities = 29/155 (18%), Positives = 63/155 (40%), Gaps = 11/155 (7%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + K+  +G+ S GK++++ R++   +     +  G  F  K + ++ ++  L + D  G 
Sbjct: 20  ELKVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGGRF-KKEIVVDGQSYLLLIRDEGGP 77

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLV 127
              +     +       V V+ +    SF     +   + + R +  + +VLVG +  + 
Sbjct: 78  PELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132

Query: 128 E--KRQVSIEEGEAKSRELNVM-FIETSAKAGFNI 159
               R +        S +L    + ET A  G N+
Sbjct: 133 AANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV 167

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  153 bits (388), Expect = 4e-48
 Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 13/161 (8%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
            ++ + +L  LGD   GK+S+I RF+   +    + T   +   K M ++ +T  + + +
Sbjct: 3   RSIPELRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTES-EQYKKEMLVDGQTHLVLIRE 60

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-----VIIVL 119
            AG    +     +   +   + V+ +    SF   S+   ++ + RG       + +V 
Sbjct: 61  EAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVG 115

Query: 120 VGNKTDLVEKRQVSIEEGEA-KSRELNVMFIETSAKAGFNI 159
             ++      R V      A  +      + ET A  G N+
Sbjct: 116 TQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNV 156

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  150 bits (382), Expect = 4e-47
 Identities = 52/154 (33%), Positives = 80/154 (51%), Gaps = 6/154 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD +VGKT ++  F   +    Y  T+  +F S  M  ++    L LWDTAGQE 
Sbjct: 25  KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEE 83

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P    DS V ++ + V +R SF N ++KW  E++         VLVG K DL + 
Sbjct: 84  YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIK-HYIDTAKTVLVGLKVDLRKD 142

Query: 130 RQ--VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
               V+ +EG+   ++L  V +IE S+ A   + 
Sbjct: 143 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN 176

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  139 bits (351), Expect = 2e-42
 Identities = 55/168 (32%), Positives = 87/168 (51%), Gaps = 14/168 (8%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           SA    K V +GD +VGKT ++  +  + F   Y  T+  +F S  + +   TV L LWD
Sbjct: 4   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWD 62

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P   R + V ++ + + S+ S+ N + KWI E++      V IVLVG K
Sbjct: 63  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIVLVGTK 121

Query: 124 TDLVEKRQ----------VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
            DL + +Q          ++  +GE   + +    +IE S+K+  N+K
Sbjct: 122 LDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVK 169

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  137 bits (346), Expect = 2e-41
 Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 16/164 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQED 90

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVE- 128
           +  L P     + V ++ + + S  SF N  +KW  EVR     +  I+LVG K DL + 
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 149

Query: 129 -----------KRQVSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
                         ++  +G A ++E+  V ++E SA     +K
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 193

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  137 bits (346), Expect = 2e-41
 Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 12/169 (7%)

Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           + +S     K V +GD +VGKT ++  +  +KF   Y  T+  D  S  + ++ + V L 
Sbjct: 2   SHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLG 60

Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLV 120
           LWDTAGQE +  L P   R + + V+ + + S+ S+ N   KW+ E+R     +V IVLV
Sbjct: 61  LWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLV 119

Query: 121 GNKTDLVE--------KRQVSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
           G K DL +           ++  +GE   +++    +IE S+K   N+K
Sbjct: 120 GTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVK 168

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  136 bits (345), Expect = 2e-41
 Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 16/166 (9%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++  F  D+F   Y  T+  +     + ++ + V L LWDTAGQ
Sbjct: 25  RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTAGQ 83

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLV 127
           E +  L P    D+ V ++ + + S  S  N   KW  EV+     +V I+LVGNK DL 
Sbjct: 84  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 142

Query: 128 E------------KRQVSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
           +            +  V  EEG   +  ++   ++E SAK    ++
Sbjct: 143 QDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVR 188

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  136 bits (344), Expect = 4e-41
 Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 16/164 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD   GKTS++  F    F  +Y  T+   +    + ++ + V L +WDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDD 94

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P +  D+SV ++ +DV S  SF N  ++W  EV       V I++VG KTDL + 
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN-HFCKKVPIIVVGCKTDLRKD 153

Query: 130 RQ------------VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
           +             V+   G+  +R +  V ++E SA+   N+ 
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVH 197

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  133 bits (336), Expect = 4e-40
 Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 16/173 (9%)

Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           A  +     K V +GD +VGKTS++  +  + +   Y  T   D  S  + ++ R VRLQ
Sbjct: 13  AGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQ 71

Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLV 120
           L DTAGQ+ F  L P    ++ + ++ + V S  SF N   KW+ E+R        I+LV
Sbjct: 72  LCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIR-CHCPKAPIILV 130

Query: 121 GNKTDLVEKRQ------------VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
           G ++DL E  +            V  E  +  + E+    +IE SA    N+K
Sbjct: 131 GTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLK 183

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  132 bits (335), Expect = 7e-40
 Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 16/170 (9%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
            ++ + KLV +GD + GKT ++  F  D+F   Y  T+  ++    + ++ + V L LWD
Sbjct: 21  QSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWD 79

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P    D+ V ++ + V S  S  N   KW+ EV+     +V I+LV NK
Sbjct: 80  TAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANK 138

Query: 124 TDLVEKRQ------------VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
            DL                 V  ++G A +  +    ++E SAK    ++
Sbjct: 139 KDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVR 188

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  132 bits (333), Expect = 9e-40
 Identities = 41/164 (25%), Positives = 81/164 (49%), Gaps = 16/164 (9%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L LWDT+G 
Sbjct: 7   KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 65

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLV 127
             + ++ P    DS   ++ +D++  ++  +   KW  E++ E   +  ++LVG K+DL 
Sbjct: 66  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSDLR 124

Query: 128 E------------KRQVSIEEGEAKSRELN-VMFIETSAKAGFN 158
                        +  VS ++G   ++++    +IE SA    N
Sbjct: 125 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  127 bits (322), Expect = 4e-38
 Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 16/164 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVE- 128
           +  L P     + V+++ + + S  SF N  +KW  EVR     +  I+LVG K DL + 
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 124

Query: 129 -----------KRQVSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
                         ++  +G A ++E+  V ++E SA     +K
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 168

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  127 bits (321), Expect = 7e-38
 Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 16/174 (9%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA        K V +GD +VGKT ++  +  D F   Y  T+  D  + ++ +  +   L
Sbjct: 10  MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLL 68

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVL 119
            L+DTAGQE +  L P     + V ++ + V +  SF N   +W+ E++ E   +V  +L
Sbjct: 69  GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK-EYAPNVPFLL 127

Query: 120 VGNKTDLVEKRQ------------VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
           +G + DL +  +            + +E+G+  ++E+    ++E SA     +K
Sbjct: 128 IGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLK 181

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  126 bits (318), Expect = 3e-37
 Identities = 43/172 (25%), Positives = 84/172 (48%), Gaps = 17/172 (9%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           M P   + K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L
Sbjct: 21  MDPNQNV-KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIEL 78

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVL 119
            LWDT+G   + ++ P    DS   ++ +D++  ++  +   KW  E++ E   +  ++L
Sbjct: 79  SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLL 137

Query: 120 VGNKTDLVE------------KRQVSIEEGEAKSRELN-VMFIETSAKAGFN 158
           VG K+DL              +  VS ++G   ++++    +IE SA    N
Sbjct: 138 VGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  124 bits (314), Expect = 1e-36
 Identities = 45/174 (25%), Positives = 86/174 (49%), Gaps = 17/174 (9%)

Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           AP   +A+ KLV +GD   GKT+++     D +  TY  T+  ++ +  +  E++ V L 
Sbjct: 20  APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 78

Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLV 120
           LWDT+G   + ++ P    DS   ++ +D++  ++  +   KW  E+  +      ++L+
Sbjct: 79  LWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL-DYCPSTRVLLI 137

Query: 121 GNKTDLVE------------KRQVSIEEGEAKSRELN-VMFIETSAKAG-FNIK 160
           G KTDL              +  +S E+G A +++L   +++E SA     +I 
Sbjct: 138 GCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIH 191

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 94.7 bits (235), Expect = 1e-24
 Identities = 30/209 (14%), Positives = 66/209 (31%), Gaps = 66/209 (31%)

Query: 16  GDQSVGKTSIITRFMYDKFDNTYQATI----GIDFLSKTM--------------YLEDRT 57
           G   +GK+ +  RF+    D  +          DF  + +                +   
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 58  VRLQLW-------DTAGQERFRSLIPSYIRDSSV-------------------------- 84
            ++ +        D   Q    + +  YI+ ++                           
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 85  -----------AVVVYDVAS--RQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKR 130
                       ++  DV+    ++F +  K++  +  +       IV+V  K D   +R
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER 214

Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNI 159
            +      A S++ N+  +ETSA++  N+
Sbjct: 215 YIRDAHTFALSKK-NLQVVETSARSNVNV 242

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 95.8 bits (238), Expect = 2e-24
 Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 16/165 (9%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDL-- 126
            +  L P     + V ++ + + S  SF +  +KW  EVR     +  I+LVG K DL  
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRD 273

Query: 127 --------VEKRQ--VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
                    EK+   ++  +G A ++E+  V ++E SA     +K
Sbjct: 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 318

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 73.2 bits (180), Expect = 6e-17
 Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 23/171 (13%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-----------TIGIDFLSKTM-YLEDR 56
            +K+V+ G    GKT+ + +++Y K     +            T+  DFL   +  ++  
Sbjct: 14  NFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGF 72

Query: 57  TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD------VASRQSFLNTSKWIDEVRTE 110
             R  L+   GQ  + +     +R     V V D       A+ +S  N  + + E    
Sbjct: 73  KTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLT 132

Query: 111 RGSDVIIVLVGNKTDLVEKRQVSIEE-GEAKSRELNVMFIETSAKAGFNIK 160
                I++ V NK DL     + +E        E     +E  A  G  + 
Sbjct: 133 LDDVPIVIQV-NKRDL--PDALPVEMVRAVVDPEGKFPVLEAVATEGKGVF 180

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 70.8 bits (173), Expect = 3e-15
 Identities = 38/181 (20%), Positives = 65/181 (35%), Gaps = 22/181 (12%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
             KL+ +G    GK+S+ +    +          ATI ++            + L LWD 
Sbjct: 3   GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF---LGNMTLNLWDC 59

Query: 66  AGQERF-----RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER--GSDVIIV 118
            GQ+ F             +   V + V+DV S +   +   +   ++  R    D  I 
Sbjct: 60  GGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIF 119

Query: 119 LVGNKTDLV--EKRQVSIEEGEAKSREL-------NVMFIETSAKAGFNIKGCSPTIRRL 169
           ++ +K DLV  +KR+   +       E        N++   TS       K  S  +  L
Sbjct: 120 VLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSL 179

Query: 170 I 170
           I
Sbjct: 180 I 180

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 67.3 bits (164), Expect = 1e-14
 Identities = 30/181 (16%), Positives = 62/181 (34%), Gaps = 23/181 (12%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           K +++ +G +  GK+SI     +    N     ++T  I    K        V  Q+WD 
Sbjct: 20  KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIY---KDDISNSSFVNFQIWDF 76

Query: 66  AGQERFRSL---IPSYIRDSSVAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLV 120
            GQ  F           R +   + V D      ++       + +           V +
Sbjct: 77  PGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFI 136

Query: 121 GNKTDLV--EKRQVSIEEGEAKSRE---------LNVMFIETSAKAGFNIKGCSPTIRRL 169
            +K D +  + +  +  +   ++ +         L++ F  TS       +  S  +++L
Sbjct: 137 -HKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIFEAFSKVVQKL 195

Query: 170 I 170
           I
Sbjct: 196 I 196

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 60.3 bits (147), Expect = 3e-12
 Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 31/167 (18%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG    GKT+I+ R    +   T   TIG  F  +T  +  + ++ Q+WD  G 
Sbjct: 7   EMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVET--VTYKNLKFQVWDLGGL 61

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE--------RGSDVIIVLV 120
              R     Y  ++   + V D   R         I   ++E             I+V+ 
Sbjct: 62  TSIRPYWRCYYSNTDAVIYVVDSCDRD-------RIGISKSELVAMLEEEELRKAILVVF 114

Query: 121 GNKTDLVEKRQVSIEE-------GEAKSRELNVMFIETSAKAGFNIK 160
            NK D+  ++ ++  E          K R+  +   +TSA  G  + 
Sbjct: 115 ANKQDM--EQAMTSSEMANSLGLPALKDRKWQIF--KTSATKGTGLD 157

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 60.7 bits (148), Expect = 3e-12
 Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 26/165 (15%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L  +G Q  GKT+ +      +F+     T+G  F  +   +    V ++LWD  GQ
Sbjct: 22  EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRK--ITKGNVTIKLWDIGGQ 77

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE--------RGSDVIIVLV 120
            RFRS+   Y R  S  V + D A ++        I+  + E        +   + ++++
Sbjct: 78  PRFRSMWERYCRGVSAIVYMVDAADQE-------KIEASKNELHNLLDKPQLQGIPVLVL 130

Query: 121 GNKTDLVEKRQVS-IEEG----EAKSRELNVMFIETSAKAGFNIK 160
           GNK DL        + E       + RE+       S K   NI 
Sbjct: 131 GNKRDLPGALDEKELIEKMNLSAIQDREICCY--SISCKEKDNID 173

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 60.3 bits (147), Expect = 4e-12
 Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 31/167 (18%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K +++ LG  + GKTSI+ R        T   T+G     +T  L+ + +  ++WD  GQ
Sbjct: 22  KIRVLMLGLDNAGKTSILYRLHLGDVVTT-VPTVG--VNLET--LQYKNISFEVWDLGGQ 76

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE--------RGSDVIIVLV 120
              R     Y  D+   + V D   R         +   + E             ++++ 
Sbjct: 77  TGVRPYWRCYFSDTDAVIYVVDSTDRD-------RMGVAKHELYALLDEDELRKSLLLIF 129

Query: 121 GNKTDLVEKRQVSIEE-------GEAKSRELNVMFIETSAKAGFNIK 160
            NK DL      S  E           +R   ++  ++S+K G  + 
Sbjct: 130 ANKQDL--PDAASEAEIAEQLGVSSIMNRTWTIV--KSSSKTGDGLV 172

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 59.9 bits (146), Expect = 5e-12
 Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 13/158 (8%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L+ LG  + GKT+I+ +F  +  D     T+G  F  KT  LE R  +L +WD  GQ
Sbjct: 18  ELRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLG--FNIKT--LEHRGFKLNIWDVGGQ 72

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLV 127
           +  RS   +Y   +   + V D A RQ   +  + +  +   ER +   +++  NK DL 
Sbjct: 73  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132

Query: 128 EKRQVS-IEEG----EAKSRELNVMFIETSAKAGFNIK 160
                + I+E       +S    +     SA  G ++ 
Sbjct: 133 GALSCNAIQEALELDSIRSHHWRI--QGCSAVTGEDLL 168

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 60.0 bits (146), Expect = 7e-12
 Identities = 34/160 (21%), Positives = 70/160 (43%), Gaps = 17/160 (10%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ +G  + GKT+I+ +    +   T   TIG  F  +T  +E + +   +WD  GQ
Sbjct: 29  QMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVET--VEYKNICFTVWDVGGQ 83

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLV 127
           ++ R L   Y +++   + V D   R+    ++  + ++  E    D ++++  NK D+ 
Sbjct: 84  DKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDM- 142

Query: 128 EKRQVSIEE-------GEAKSRELNVMFIETSAKAGFNIK 160
               + + E          +SR   V    T A  G  + 
Sbjct: 143 -PNAMPVSELTDKLGLQHLRSRTWYVQ--ATCATQGTGLY 179

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 39/158 (24%), Positives = 74/158 (46%), Gaps = 13/158 (8%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG  + GKT+++ +   +   +    T G  F  K+  ++ +  +L +WD  GQ
Sbjct: 16  EVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQG--FNIKS--VQSQGFKLNVWDIGGQ 70

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLV 127
            + R    SY  ++ + + V D A R+ F  T + + E+   E+ S V +++  NK DL+
Sbjct: 71  RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130

Query: 128 EKRQVS-IEEG----EAKSRELNVMFIETSAKAGFNIK 160
                S I EG      + R   +     SA  G  ++
Sbjct: 131 TAAPASEIAEGLNLHTIRDRVWQIQ--SCSALTGEGVQ 166

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 13/157 (8%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            +++ LG    GKT+I+ R    +   T + TIG  F  +T  L  + ++L +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIG--FNVET--LSYKNLKLNVWDLGGQT 73

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVE 128
             R     Y  D++  + V D   +      SK +  +  E    D  +++  NK D   
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ-- 131

Query: 129 KRQVSIEE-----GEAKSRELNVMFIETSAKAGFNIK 160
              +S  E        + ++ +   + +SA  G  I 
Sbjct: 132 PGALSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 58.0 bits (141), Expect = 3e-11
 Identities = 34/160 (21%), Positives = 69/160 (43%), Gaps = 17/160 (10%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++K++ +G  + GKT+I+ +F  ++  +T   TIG     +   +     R  +WD  GQ
Sbjct: 21  EHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEE--IVINNTRFLMWDIGGQ 75

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLV 127
           E  RS   +Y  ++   +VV D   R+    T + + ++   E      +++  NK D+ 
Sbjct: 76  ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV- 134

Query: 128 EKRQVSIEE-------GEAKSRELNVMFIETSAKAGFNIK 160
            K  +++ E          K  + ++      A  G  + 
Sbjct: 135 -KECMTVAEISQFLKLTSIKDHQWHIQ--ACCALTGEGLC 171

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 57.6 bits (140), Expect = 3e-11
 Identities = 35/165 (21%), Positives = 68/165 (41%), Gaps = 31/165 (18%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ +G  + GKT+I+ +    +   T   TIG  F  +T  +E + +   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVET--VEYKNISFTVWDVGGQDK 56

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE--------RGSDVIIVLVGN 122
            R L   Y +++   + V D   R+        ++E R E           D ++++  N
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRER-------VNEAREELMRMLAEDELRDAVLLVFAN 109

Query: 123 KTDLVEKRQVSIEE-------GEAKSRELNVMFIETSAKAGFNIK 160
           K DL     ++  E          + R   +    T A +G  + 
Sbjct: 110 KQDL--PNAMNAAEITDKLGLHSLRHRNWYIQ--ATCATSGDGLY 150

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 57.7 bits (140), Expect = 5e-11
 Identities = 30/161 (18%), Positives = 66/161 (40%), Gaps = 15/161 (9%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-TIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           +  ++ LG  + GKT+II +       +     TIG  F  +    +  ++   ++D +G
Sbjct: 21  EVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEK--FKSSSLSFTVFDMSG 76

Query: 68  QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE---RGSDVIIVLVGNKT 124
           Q R+R+L   Y ++    + V D + R   +   + +D +      +   + I+   NK 
Sbjct: 77  QGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKM 136

Query: 125 DLVEKRQVS-IEEG----EAKSRELNVMFIETSAKAGFNIK 160
           DL +      + +       K +  ++    + A  G  ++
Sbjct: 137 DLRDAVTSVKVSQLLCLENIKDKPWHIC--ASDAIKGEGLQ 175

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 57.3 bits (139), Expect = 6e-11
 Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 6/119 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
             KLVFLG  + GKT+++     D+       T+     S+   L    +    +D  G 
Sbjct: 25  TGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLH--PTSEE--LTIAGMTFTTFDLGGH 79

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDL 126
            + R +  +Y+   +  V + D A  +  L + + +D +   E  ++V I+++GNK D 
Sbjct: 80  IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDR 138

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 57.3 bits (139), Expect = 6e-11
 Identities = 34/160 (21%), Positives = 69/160 (43%), Gaps = 17/160 (10%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++K++ +G  + GKT+I+ +F  ++  +T   TIG     +   +     R  +WD  GQ
Sbjct: 16  EHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEE--IVINNTRFLMWDIGGQ 70

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLV 127
           E  RS   +Y  ++   +VV D   R+    T + + ++   E      +++  NK D+ 
Sbjct: 71  ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV- 129

Query: 128 EKRQVSIEE-------GEAKSRELNVMFIETSAKAGFNIK 160
            K  +++ E          K  + ++      A  G  + 
Sbjct: 130 -KECMTVAEISQFLKLTSIKDHQWHIQ--ACCALTGEGLC 166

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 13/126 (10%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTM-YLEDRTVRLQLWDTAG 67
           +  ++F+G    GKT +  R +  ++ +T Q +I     S       +R   L L D  G
Sbjct: 7   QRAVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSIT--DSSAIYKVNNNRGNSLTLIDLPG 63

Query: 68  QERFR-SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDE-----VRTERGSDVIIVLV- 120
            E  R  L+  +   +   V V D A+ Q  +      +      + +    +   +L+ 
Sbjct: 64  HESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVA--EFLYQVLIDSMALKNSPSLLIA 121

Query: 121 GNKTDL 126
            NK D+
Sbjct: 122 CNKQDI 127

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 20/126 (15%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
             KL+FLG  + GKT+++     D+     Q T      S+   L    ++   +D  G 
Sbjct: 23  HGKLLFLGLDNAGKTTLLHMLKNDRLATL-QPTWH--PTSEE--LAIGNIKFTTFDLGGH 77

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE--------RGSDVIIVLV 120
            + R L   Y  + +  V + D A  +         DE R E           DV  V++
Sbjct: 78  IQARRLWKDYFPEVNGIVFLVDAADPE-------RFDEARVELDALFNIAELKDVPFVIL 130

Query: 121 GNKTDL 126
           GNK D 
Sbjct: 131 GNKIDA 136

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 54.8 bits (132), Expect = 8e-10
 Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 19/131 (14%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
            +  ++  G Q+ GKTS++T    D    T   +     LS   Y       + L D  G
Sbjct: 11  YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE--PLSAADY---DGSGVTLVDFPG 64

Query: 68  QERFRSLIPSYIRDSSVAV--VVY--DVASRQSFLNTSK-------WIDEVRTERGSDVI 116
             + R  +  Y++  +  V  +++  D       L T+         I E   E G D++
Sbjct: 65  HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 124

Query: 117 IVLVGNKTDLV 127
           I    NK++L 
Sbjct: 125 I--ACNKSELF 133

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 54.4 bits (131), Expect = 8e-10
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 23/130 (17%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
            ++  G Q+ GKTS++T    D    T   +     LS   Y       + L D  G  +
Sbjct: 50  SIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE--PLSAADY---DGSGVTLVDFPGHVK 103

Query: 71  FRSLIPSYIRDSSVAV--VVYDVASRQSFLNTSKWIDEVRTE----------RGSDVIIV 118
            R  +  Y++  +  V  +++ V S        K +                   + I +
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMVDS----TVDPKKLTTTAEFLVDILSITESSCENGIDI 159

Query: 119 LV-GNKTDLV 127
           L+  NK++L 
Sbjct: 160 LIACNKSELF 169

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 50.8 bits (121), Expect = 3e-08
 Identities = 26/178 (14%), Positives = 57/178 (32%), Gaps = 25/178 (14%)

Query: 12  LVFLGDQSVGKTSIITRFMYDKFDNTY----QATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           ++ +G +  GK+SI  + ++           ++T        +       + L + +  G
Sbjct: 2   VLLMGVRRCGKSSIC-KVVFHNMQPLDTLYLESTSNPSLEHFSTL-----IDLAVMELPG 55

Query: 68  QERFRSL---IPSYIRDSSVAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNK 123
           Q  +           +     V V D      + +     I E   +    + I ++ +K
Sbjct: 56  QLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHK 115

Query: 124 TDLVE-----------KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
            D +             ++   E  E     + V F  TS       +  S  +++LI
Sbjct: 116 VDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDHSIYEAFSRIVQKLI 173

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 48.7 bits (116), Expect = 1e-07
 Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 31/167 (18%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ +G  + GKT+I+ +    +   T   TIG  F  +T  +E + +   +WD  GQ
Sbjct: 165 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVET--VEYKNISFTVWDVGGQ 219

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE--------RGSDVIIVLV 120
           ++ R L   Y +++   + V D   R+        ++E R E           D ++++ 
Sbjct: 220 DKIRPLWRHYFQNTQGLIFVVDSNDRE-------RVNEAREELMRMLAEDELRDAVLLVF 272

Query: 121 GNKTDLVEKRQVSIEE-------GEAKSRELNVMFIETSAKAGFNIK 160
            NK DL     ++  E          + R  N     T A +G  + 
Sbjct: 273 ANKQDL--PNAMNAAEITDKLGLHSLRHR--NWYIQATCATSGDGLY 315

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 37.1 bits (87), Expect = 9e-04
 Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 20/112 (17%)

Query: 58  VRLQLWDTAGQ-------ERF---RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV 107
           + L + DTAG        ER    R+     I  +   + + D  +    ++ ++   E 
Sbjct: 52  MPLHIIDTAGLREASDEVERIGIERAW--QEIEQADRVLFMVD-GTTTDAVDPAEIWPEF 108

Query: 108 RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
                + + I +V NK D+  +     E             I  SA+ G  +
Sbjct: 109 IARLPAKLPITVVRNKADITGETLGMSEVNGHA-------LIRLSARTGEGV 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	170
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	100.0
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	100.0
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	100.0
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	100.0
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	100.0
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	100.0
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	100.0
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	100.0
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	100.0
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	100.0
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	100.0
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	100.0
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	100.0
3llu_A	196	RAS-related GTP-binding protein C; structural geno	100.0
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	100.0
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	100.0
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	100.0
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	100.0
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	100.0
2wji_A	165	Ferrous iron transport protein B homolog; membrane	100.0
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.98
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.98
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.97
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.97
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.97
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.97
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.97
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.97
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.97
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.97
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.97
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.97
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.97
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.97
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.96
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.96
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.96
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.96
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.96
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.96
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.96
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.96
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.95
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.95
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.95
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.95
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.95
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.94
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.94
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.93
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.93
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.93
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.93
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.93
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.93
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.93
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.93
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.93
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.93
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.92
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.92
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.92
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.92
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.92
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.92
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.92
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.92
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.92
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.92
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.91
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.91
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.91
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.91
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.91
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.91
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.9
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.9
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.9
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.9
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.9
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.9
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.9
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.9
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.9
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.9
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.9
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.89
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.89
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.88
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.88
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.88
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.88
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.87
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.87
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.87
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.85
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.85
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.85
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.85
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.85
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.84
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.84
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.84
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.83
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.83
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.83
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.83
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.82
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.82
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.8
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.79
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.78
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.77
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.77
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.77
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.73
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.73
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.72
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.71
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.7
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.69
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.68
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.68
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.66
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.66
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.61
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.6
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.54
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.54
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.52
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.44
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.27
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.26
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.23
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.21
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.2
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.18
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.12
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.11
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.07
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.83
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.81
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.8
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.74
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.67
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.66
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.59
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.58
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.5
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.48
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.36
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.36
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.17
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.12
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.97
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.97
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.87
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.86
2xxa_A	433	Signal recognition particle protein; protein trans	97.82
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.82
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.81
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.8
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.74
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.74
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.72
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.72
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.7
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.7
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.7
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.68
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.68
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.67
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.65
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.65
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.64
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.63
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.63
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.62
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.61
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.61
3end_A	307	Light-independent protochlorophyllide reductase ir	97.61
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.6
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.59
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.59
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.59
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.58
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.58
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.58
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.57
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.56
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.56
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.56
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.56
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.56
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.55
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.55
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.55
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.53
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.53
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.53
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.52
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.52
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.51
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.51
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.5
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.5
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.49
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.49
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.49
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.49
1g6h_A	257	High-affinity branched-chain amino acid transport	97.49
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.49
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.49
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.48
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.48
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.48
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.47
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.47
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.47
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.47
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.47
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.47
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.46
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.46
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.46
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.46
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.45
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.45
3uc9_A	233	Increased recombination centers protein 6; rossman	97.45
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.45
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.45
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.45
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.44
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.44
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.44
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.44
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.44
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.43
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.43
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.43
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.42
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.42
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.42
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.42
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.42
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.41
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.41
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.41
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.41
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.4
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.4
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.4
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.4
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.39
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.38
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.38
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.38
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.38
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.37
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.37
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.36
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.36
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.36
3co5_A	143	Putative two-component system transcriptional RES	97.35
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.34
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.33
1via_A	175	Shikimate kinase; structural genomics, transferase	97.33
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.32
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.32
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.31
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.31
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.31
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.31
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.3
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.3
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.29
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.29
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.29
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.29
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.28
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.28
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.28
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.27
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.27
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.26
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.26
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.26
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.25
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.25
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.25
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.25
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.25
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.25
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.24
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.24
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.24
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.24
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.24
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.24
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.23
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.22
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.22
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.22
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.21
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.2
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.2
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.19
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.18
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.17
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.17
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.17
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.16
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.16
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.16
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.15
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.14
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.12
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	97.12
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	97.11
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	97.11
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.07
2og2_A	359	Putative signal recognition particle receptor; nuc	97.07
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.07
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.07
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.05
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.05
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.04
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.04
3bos_A	242	Putative DNA replication factor; P-loop containing	97.04
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.04
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.04
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.03
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.03
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.02
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	97.01
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.0
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.99
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.99
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.98
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.97
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.97
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.96
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.94
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.94
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.93
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.93
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.92
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.91
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.9
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.86
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.85
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.85
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.85
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.85
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.84
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.84
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.84
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.84
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.84
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.84
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.83
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.82
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.82
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.81
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.81
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.8
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.79
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.79
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.77
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.77
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.76
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.75
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.74
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.73
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.73
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.72
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.72
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.71
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.7
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.7
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.7
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.7
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.69
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.68
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.66
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.66
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.65
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.65
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.64
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.63
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.63
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.61
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.6
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.59
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.58
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.58
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.57
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.57
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.56
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.55
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.55
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.53
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.52
2qgz_A	308	Helicase loader, putative primosome component; str	96.52
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.52
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.51
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.49
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	96.48
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.47
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.46
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.43
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	96.42
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.42
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.41
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.41
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.4
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.4
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.39
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.39

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=6.2e-45  Score=245.34  Aligned_cols=165  Identities=78%  Similarity=1.166  Sum_probs=146.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      +.+++||+++|.+|||||||++++..+.+...+.||.+.++.......++..+++.||||+|+++|..+...++++++++
T Consensus        10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~   89 (216)
T 4dkx_A           10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA   89 (216)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred             CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence            46789999999999999999999999999999999999999999998999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      ++|||++++++|+.+..|+..+.....+++|++||+||+|+.+.+.+..++++++++.++++|++|||++|.||+++|+.
T Consensus        90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~  169 (216)
T 4dkx_A           90 VVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRR  169 (216)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHH
Confidence            99999999999999999999999888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhC
Q 030856          166 IRRLI  170 (170)
Q Consensus       166 l~~~i  170 (170)
                      |++.|
T Consensus       170 i~~~i  174 (216)
T 4dkx_A          170 VAAAL  174 (216)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            98764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=1.5e-38  Score=207.00  Aligned_cols=165  Identities=38%  Similarity=0.752  Sum_probs=151.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      +.++++|+++|++|+|||||++++.++.+...+.++.+.++.......++..+.+.+||+||++.+...+..++.++|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            34679999999999999999999999888877788888888777888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      ++|||++++++++.+..|+..+.....++.|+++|+||+|+..++.+..++++.++...+++++++||++|.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  162 (170)
T 1r2q_A           83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998887788999999999999877788889999999999999999999999999999999


Q ss_pred             HHhhC
Q 030856          166 IRRLI  170 (170)
Q Consensus       166 l~~~i  170 (170)
                      |.+.+
T Consensus       163 i~~~~  167 (170)
T 1r2q_A          163 IAKKL  167 (170)
T ss_dssp             HHHTS
T ss_pred             HHHHH
Confidence            98764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.3e-39  Score=213.89  Aligned_cols=163  Identities=39%  Similarity=0.633  Sum_probs=151.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .+.+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+|||||.+.+...+..++..+|+++
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  103 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI  103 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            45699999999999999999999999888888888888888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      +|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...++++++|||++|.|++++|++|
T Consensus       104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l  183 (201)
T 2ew1_A          104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL  183 (201)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988776789999999999998778888899999999999999999999999999999999


Q ss_pred             Hhh
Q 030856          167 RRL  169 (170)
Q Consensus       167 ~~~  169 (170)
                      .+.
T Consensus       184 ~~~  186 (201)
T 2ew1_A          184 ACR  186 (201)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=1.1e-38  Score=211.71  Aligned_cols=166  Identities=36%  Similarity=0.679  Sum_probs=148.4

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCc
Q 030856            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (170)
Q Consensus         4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   83 (170)
                      ....+.+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|
T Consensus        16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   95 (191)
T 2a5j_A           16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA   95 (191)
T ss_dssp             CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence            34456899999999999999999999999887777788887887778888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 030856           84 VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCS  163 (170)
Q Consensus        84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (170)
                      ++++|||++++++++.+..|+..+......+.|+++|+||+|+...+.+..++++.+++..+++++++||+++.|++++|
T Consensus        96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  175 (191)
T 2a5j_A           96 GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF  175 (191)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999988777789999999999998777888899999999999999999999999999999


Q ss_pred             HHHHhh
Q 030856          164 PTIRRL  169 (170)
Q Consensus       164 ~~l~~~  169 (170)
                      ++|.+.
T Consensus       176 ~~l~~~  181 (191)
T 2a5j_A          176 INTAKE  181 (191)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999864

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=6.5e-39  Score=214.47  Aligned_cols=164  Identities=41%  Similarity=0.699  Sum_probs=143.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ....++|+++|.+|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|++
T Consensus        26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (201)
T 2hup_A           26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA  105 (201)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence            34579999999999999999999999988777788888788888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCCChHHHHH
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKGCSP  164 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~~~~~  164 (170)
                      |+|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++++++...++ ++++|||++|.|++++|+
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  185 (201)
T 2hup_A          106 ILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFL  185 (201)
T ss_dssp             EEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999999887767899999999999988788888999999999999 999999999999999999


Q ss_pred             HHHhh
Q 030856          165 TIRRL  169 (170)
Q Consensus       165 ~l~~~  169 (170)
                      +|.+.
T Consensus       186 ~l~~~  190 (201)
T 2hup_A          186 RVATE  190 (201)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=1.5e-38  Score=208.60  Aligned_cols=166  Identities=33%  Similarity=0.624  Sum_probs=152.1

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCc
Q 030856            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (170)
Q Consensus         4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   83 (170)
                      ....+.++|+++|.+|+|||||++++.+..+...+.++.+.++.......++..+.+.+||+||++.+...+..+++++|
T Consensus        10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (179)
T 1z0f_A           10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (179)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence            34456799999999999999999999999888777888887877777888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 030856           84 VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCS  163 (170)
Q Consensus        84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (170)
                      ++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++..+++++++||++|.|++++|
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  169 (179)
T 1z0f_A           90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF  169 (179)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999988877789999999999998778888899999999999999999999999999999


Q ss_pred             HHHHhh
Q 030856          164 PTIRRL  169 (170)
Q Consensus       164 ~~l~~~  169 (170)
                      ++|.+.
T Consensus       170 ~~l~~~  175 (179)
T 1z0f_A          170 LEAAKK  175 (179)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999875

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=2.9e-38  Score=207.73  Aligned_cols=166  Identities=39%  Similarity=0.703  Sum_probs=151.9

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   84 (170)
                      ...+.++|+++|++|+|||||++++.+..+...+.++.+.++.......++..+.+.+||+||++.+...+..++.++|+
T Consensus         8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   87 (181)
T 2efe_B            8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   87 (181)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred             CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence            34567999999999999999999999998887777888878878888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 030856           85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSP  164 (170)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~  164 (170)
                      +++|||++++.+++.+..|+..+.....++.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|+
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  167 (181)
T 2efe_B           88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY  167 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            99999999999999999999999888777899999999999988888888999999999999999999999999999999


Q ss_pred             HHHhhC
Q 030856          165 TIRRLI  170 (170)
Q Consensus       165 ~l~~~i  170 (170)
                      +|.+.+
T Consensus       168 ~l~~~~  173 (181)
T 2efe_B          168 EIARRL  173 (181)
T ss_dssp             HHHHTC
T ss_pred             HHHHHH
Confidence            998764

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=3.6e-38  Score=205.14  Aligned_cols=163  Identities=44%  Similarity=0.763  Sum_probs=150.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      ++++|+++|++|+|||||++++.+..+...+.++.+.++.......++..+.+.+||+||++.+...+..++.++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            56899999999999999999999998887788888888888888888888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC---cccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK---RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSP  164 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~  164 (170)
                      |||++++.+++.+..|+..+.....++.|+++|+||+|+...   +++..++++.++...+++++++||++|.|++++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999998887778999999999998765   67788889999999999999999999999999999


Q ss_pred             HHHhhC
Q 030856          165 TIRRLI  170 (170)
Q Consensus       165 ~l~~~i  170 (170)
                      +|.+.+
T Consensus       162 ~l~~~i  167 (170)
T 1ek0_A          162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHH
Confidence            998764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=4.1e-38  Score=209.51  Aligned_cols=163  Identities=39%  Similarity=0.664  Sum_probs=153.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ...+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++..+|+++
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   93 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   93 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence            45699999999999999999999999988888889888888888888998899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      +|||++++++++.+..|+..+......+.|+++|+||+|+...+.+..++++.++...+++++++||++|.|++++|++|
T Consensus        94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l  173 (196)
T 3tkl_A           94 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM  173 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988877889999999999999888899999999999999999999999999999999999


Q ss_pred             Hhh
Q 030856          167 RRL  169 (170)
Q Consensus       167 ~~~  169 (170)
                      .+.
T Consensus       174 ~~~  176 (196)
T 3tkl_A          174 AAE  176 (196)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=2.5e-38  Score=208.99  Aligned_cols=164  Identities=35%  Similarity=0.627  Sum_probs=151.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ..+.++|+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|++
T Consensus         7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   86 (186)
T 2bme_A            7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   86 (186)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence            45679999999999999999999999988888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      ++|||++++++++.+..|+..+......+.|+++|+||+|+...+.+..++++.++...+++++++||++|.|++++|++
T Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  166 (186)
T 2bme_A           87 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ  166 (186)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999999999999988877778999999999999877788889999999999999999999999999999999


Q ss_pred             HHhh
Q 030856          166 IRRL  169 (170)
Q Consensus       166 l~~~  169 (170)
                      |.+.
T Consensus       167 l~~~  170 (186)
T 2bme_A          167 CARK  170 (186)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9864

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=3.7e-39  Score=212.50  Aligned_cols=164  Identities=41%  Similarity=0.693  Sum_probs=123.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ....++|+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (183)
T 2fu5_C            5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   84 (183)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence            35679999999999999999999999888778888888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      ++|||++++++++.+..|+..+.....++.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  164 (183)
T 2fu5_C           85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT  164 (183)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998876678999999999999887888889999999999999999999999999999999


Q ss_pred             HHhh
Q 030856          166 IRRL  169 (170)
Q Consensus       166 l~~~  169 (170)
                      |.+.
T Consensus       165 l~~~  168 (183)
T 2fu5_C          165 LARD  168 (183)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9864

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=5.8e-38  Score=204.25  Aligned_cols=164  Identities=37%  Similarity=0.682  Sum_probs=151.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .+.++|+++|++|+|||||++++.+..+...+.++.+.++........+....+.+||+||.+.+......++.++|+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            46799999999999999999999999888788888888887788888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      +|||++++.+++.+..|+..+.....++.|+++|+||+|+...+++..++++.++...+++++++||++|.|++++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i  163 (170)
T 1z0j_A           84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            99999999999999999999988777889999999999998878888899999999999999999999999999999999


Q ss_pred             HhhC
Q 030856          167 RRLI  170 (170)
Q Consensus       167 ~~~i  170 (170)
                      .+.+
T Consensus       164 ~~~i  167 (170)
T 1z0j_A          164 SRRI  167 (170)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            8764

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=3.2e-38  Score=209.12  Aligned_cols=165  Identities=36%  Similarity=0.670  Sum_probs=151.2

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   84 (170)
                      .....++|+++|.+|+|||||++++.+..+...+.++.+.++........+..+.+.+||+||++.+...+..++..+|+
T Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   97 (189)
T 2gf9_A           18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG   97 (189)
T ss_dssp             TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred             ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence            34557999999999999999999999998877778888878877777788888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 030856           85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSP  164 (170)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~  164 (170)
                      +++|||++++++++.+..|+..+......+.|+++|+||+|+...+.+..++++++++..+++++++||++|.|++++|+
T Consensus        98 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  177 (189)
T 2gf9_A           98 FLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFE  177 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999999999887667899999999999988788888899999999999999999999999999999


Q ss_pred             HHHhh
Q 030856          165 TIRRL  169 (170)
Q Consensus       165 ~l~~~  169 (170)
                      +|.+.
T Consensus       178 ~l~~~  182 (189)
T 2gf9_A          178 RLVDV  182 (189)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=2.7e-38  Score=212.07  Aligned_cols=168  Identities=39%  Similarity=0.639  Sum_probs=153.1

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhc
Q 030856            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (170)
Q Consensus         1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   80 (170)
                      |++ .....++|+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.
T Consensus         1 M~~-~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   79 (206)
T 2bcg_Y            1 MNS-EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYR   79 (206)
T ss_dssp             --C-CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGT
T ss_pred             CCc-ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhcc
Confidence            543 3456799999999999999999999999988888888888888888888888899999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 030856           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~  160 (170)
                      ++|++++|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++++.++...+++++++||++|.|++
T Consensus        80 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  159 (206)
T 2bcg_Y           80 GSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVE  159 (206)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHH
T ss_pred             CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence            99999999999999999999999999988777789999999999998888888899999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 030856          161 GCSPTIRRL  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      ++|++|.+.
T Consensus       160 ~l~~~l~~~  168 (206)
T 2bcg_Y          160 DAFLTMARQ  168 (206)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999864

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.3e-38  Score=209.59  Aligned_cols=165  Identities=38%  Similarity=0.701  Sum_probs=151.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ..+.+||+++|++|+|||||++++.+..+...+.++.+.++.......++....+.+||+||.+.+...+..++.++|++
T Consensus        20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   99 (192)
T 2fg5_A           20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA   99 (192)
T ss_dssp             -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence            45689999999999999999999999988777788888888777787888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      ++|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++..+++++++||+++.|+++++++
T Consensus       100 ilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  179 (192)
T 2fg5_A          100 VIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQG  179 (192)
T ss_dssp             EEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence            99999999999999999999998877678999999999999877788889999999999999999999999999999999


Q ss_pred             HHhhC
Q 030856          166 IRRLI  170 (170)
Q Consensus       166 l~~~i  170 (170)
                      |.+.+
T Consensus       180 l~~~i  184 (192)
T 2fg5_A          180 ISRQI  184 (192)
T ss_dssp             HHHTC
T ss_pred             HHHHH
Confidence            98764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=4.8e-38  Score=206.20  Aligned_cols=165  Identities=79%  Similarity=1.176  Sum_probs=152.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      +.++++|+++|++|+|||||++++.+..+...+.++.+.++.......++..+.+.+||+||.+.+...+..++.++|++
T Consensus        11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   90 (179)
T 2y8e_A           11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA   90 (179)
T ss_dssp             -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            35679999999999999999999999888888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      ++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...+++++++||++|.|+++++++
T Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  170 (179)
T 2y8e_A           91 VVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR  170 (179)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988877678999999999999887888889999999999999999999999999999999


Q ss_pred             HHhhC
Q 030856          166 IRRLI  170 (170)
Q Consensus       166 l~~~i  170 (170)
                      |.+.+
T Consensus       171 l~~~~  175 (179)
T 2y8e_A          171 VAAAL  175 (179)
T ss_dssp             HHHTC
T ss_pred             HHHHH
Confidence            98764

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=1.1e-38  Score=207.69  Aligned_cols=163  Identities=37%  Similarity=0.654  Sum_probs=144.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .+.++|+++|++|+|||||++++.+..+...+.++.+.++.......++..+.+.+||+||++.+...+..+++++|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI   83 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence            56799999999999999999999999888778888888888788888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      +|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  163 (170)
T 1z08_A           84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            99999999999999999999887766789999999999998878888899999999999999999999999999999999


Q ss_pred             Hhh
Q 030856          167 RRL  169 (170)
Q Consensus       167 ~~~  169 (170)
                      .+.
T Consensus       164 ~~~  166 (170)
T 1z08_A          164 CKR  166 (170)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=7.5e-38  Score=206.22  Aligned_cols=164  Identities=30%  Similarity=0.511  Sum_probs=149.2

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   84 (170)
                      ...+.+||+++|++|+|||||++++.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++.++|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   92 (183)
T 3kkq_A           14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG   92 (183)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            456789999999999999999999999988888888877665 6667788888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecC-CCCChHHH
Q 030856           85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK-AGFNIKGC  162 (170)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~-~~~~v~~~  162 (170)
                      +++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++++.+++.++++++++||+ ++.|++++
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l  172 (183)
T 3kkq_A           93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKT  172 (183)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHH
Confidence            999999999999999999999887643 3689999999999998888999999999999999999999999 99999999


Q ss_pred             HHHHHhh
Q 030856          163 SPTIRRL  169 (170)
Q Consensus       163 ~~~l~~~  169 (170)
                      |++|.+.
T Consensus       173 ~~~l~~~  179 (183)
T 3kkq_A          173 FHDLVRV  179 (183)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999875

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.9e-38  Score=209.90  Aligned_cols=166  Identities=34%  Similarity=0.615  Sum_probs=144.2

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCc
Q 030856            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (170)
Q Consensus         4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   83 (170)
                      .+....++|+++|.+|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||.+.+...+..++.++|
T Consensus        21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  100 (192)
T 2il1_A           21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK  100 (192)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred             cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence            34556899999999999999999999998887777888888888888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhc-CCeEEEeecCCCCChHHH
Q 030856           84 VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKGC  162 (170)
Q Consensus        84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~v~~~  162 (170)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++..++++.+++.. +++++++||++|.|++++
T Consensus       101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  180 (192)
T 2il1_A          101 GIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEI  180 (192)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHH
Confidence            9999999999999999999999888877678999999999999887888888899999885 789999999999999999


Q ss_pred             HHHHHhh
Q 030856          163 SPTIRRL  169 (170)
Q Consensus       163 ~~~l~~~  169 (170)
                      |++|.+.
T Consensus       181 ~~~l~~~  187 (192)
T 2il1_A          181 FLKLVDD  187 (192)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999865

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=8.7e-38  Score=207.47  Aligned_cols=169  Identities=37%  Similarity=0.605  Sum_probs=149.4

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeee-EEEEEeCCe---------EEEEEEEecCChhh
Q 030856            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFL-SKTMYLEDR---------TVRLQLWDTAGQER   70 (170)
Q Consensus         1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~g~~~   70 (170)
                      |++......++|+++|++|+|||||++++.+..+...+.++.+.++. ......++.         .+.+.+||+||.+.
T Consensus         3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   82 (195)
T 3bc1_A            3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER   82 (195)
T ss_dssp             ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred             CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence            55555677899999999999999999999998888777888887776 555555555         78999999999999


Q ss_pred             hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEE
Q 030856           71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFI  149 (170)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  149 (170)
                      +...+..++.++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++++++...+++++
T Consensus        83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  162 (195)
T 3bc1_A           83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYF  162 (195)
T ss_dssp             GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEE
Confidence            999999999999999999999999999999999999887765 6899999999999987778888999999999999999


Q ss_pred             EeecCCCCChHHHHHHHHhh
Q 030856          150 ETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       150 ~~S~~~~~~v~~~~~~l~~~  169 (170)
                      ++||+++.|++++|++|.+.
T Consensus       163 ~~Sa~~~~~v~~l~~~l~~~  182 (195)
T 3bc1_A          163 ETSAANGTNISHAIEMLLDL  182 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999864

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.7e-38  Score=207.62  Aligned_cols=164  Identities=32%  Similarity=0.617  Sum_probs=150.4

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ..+.++|+++|++|+|||||++++.+..+...+.++.+.++.......++..+.+.+||+||.+.+...+..++.++|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v  101 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA  101 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            34579999999999999999999999988877788888888777787888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++++.++...+++++++||++|.|++++|++
T Consensus       102 i~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  181 (193)
T 2oil_A          102 LLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFET  181 (193)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988776678999999999999877788889999999999999999999999999999999


Q ss_pred             HHhh
Q 030856          166 IRRL  169 (170)
Q Consensus       166 l~~~  169 (170)
                      |.+.
T Consensus       182 l~~~  185 (193)
T 2oil_A          182 VLKE  185 (193)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9865

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=9.6e-38  Score=206.83  Aligned_cols=165  Identities=34%  Similarity=0.585  Sum_probs=148.4

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh-hhhhhhhcCCcE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRDSSV   84 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~   84 (170)
                      ..+.+||+++|.+|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||.+.+. .++..+++++|+
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~   96 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA   96 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence            4567999999999999999999999998888888888888888888888888999999999999988 889999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCC---CChH
Q 030856           85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG---FNIK  160 (170)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~---~~v~  160 (170)
                      +|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..++++.++...+++++++||+++   .|++
T Consensus        97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~  176 (189)
T 1z06_A           97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE  176 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence            999999999999999999999988875 468999999999999887888889999999999999999999999   9999


Q ss_pred             HHHHHHHhhC
Q 030856          161 GCSPTIRRLI  170 (170)
Q Consensus       161 ~~~~~l~~~i  170 (170)
                      ++|++|.+.+
T Consensus       177 ~l~~~l~~~i  186 (189)
T 1z06_A          177 AIFMTLAHKL  186 (189)
T ss_dssp             HHHHHHC---
T ss_pred             HHHHHHHHHH
Confidence            9999998753

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=9.7e-38  Score=205.09  Aligned_cols=163  Identities=39%  Similarity=0.675  Sum_probs=148.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ..+.++|+++|++|+|||||++++.+......+.++.+.+.....+..++..+.+.+||+||.+.+...+..++.++|++
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   85 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV   85 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence            45679999999999999999999999988888888888888888888889889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      ++|||++++++++.+..|+..+.... ++.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  164 (181)
T 3tw8_B           86 IVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNC  164 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999987765 58999999999999888888889999999999999999999999999999999


Q ss_pred             HHhh
Q 030856          166 IRRL  169 (170)
Q Consensus       166 l~~~  169 (170)
                      |.+.
T Consensus       165 l~~~  168 (181)
T 3tw8_B          165 ITEL  168 (181)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9875

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=3.4e-38  Score=207.56  Aligned_cols=164  Identities=32%  Similarity=0.422  Sum_probs=147.5

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   84 (170)
                      +..+.++|+++|++|+|||||++++.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++.++|+
T Consensus         2 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   80 (181)
T 3t5g_A            2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING   80 (181)
T ss_dssp             CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred             CCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence            345789999999999999999999998888888888887666 6667788888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 030856           85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCS  163 (170)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (170)
                      +++|||++++++++.+..|+..+..... .+.|+++|+||+|+...+.+..++++.+++..+++++++||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  160 (181)
T 3t5g_A           81 YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF  160 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Confidence            9999999999999999999998877654 579999999999998888999999999999999999999999999999999


Q ss_pred             HHHHhh
Q 030856          164 PTIRRL  169 (170)
Q Consensus       164 ~~l~~~  169 (170)
                      ++|.+.
T Consensus       161 ~~l~~~  166 (181)
T 3t5g_A          161 RRIILE  166 (181)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999875

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=1.7e-37  Score=207.72  Aligned_cols=163  Identities=35%  Similarity=0.642  Sum_probs=150.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ...+||+++|++|+|||||++++.+..+...+.++.+.++.......++..+.+.+||+||.+.+...+..++.++|++|
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   85 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI   85 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence            45799999999999999999999999887777888888888778888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      +|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.++...+++++++||++|.|++++|++|
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  165 (203)
T 1zbd_A           86 LMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL  165 (203)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999988766789999999999998888888899999999999999999999999999999999


Q ss_pred             Hhh
Q 030856          167 RRL  169 (170)
Q Consensus       167 ~~~  169 (170)
                      .+.
T Consensus       166 ~~~  168 (203)
T 1zbd_A          166 VDV  168 (203)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=5.2e-38  Score=209.93  Aligned_cols=163  Identities=36%  Similarity=0.645  Sum_probs=140.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .+.+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||.+.+...+..+++++|++|
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  102 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL  102 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence            45799999999999999999999998887777888887888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      +|||++++++++.+..|+..+......+.|+++|+||+|+...+.+..++++.+++..++++++|||++|.|++++|++|
T Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l  182 (200)
T 2o52_A          103 LVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKC  182 (200)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988777789999999999998778888899999999999999999999999999999999


Q ss_pred             Hhh
Q 030856          167 RRL  169 (170)
Q Consensus       167 ~~~  169 (170)
                      .+.
T Consensus       183 ~~~  185 (200)
T 2o52_A          183 ART  185 (200)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            865

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.4e-37  Score=204.35  Aligned_cols=164  Identities=39%  Similarity=0.675  Sum_probs=142.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   84 (170)
                      ..+.++|+++|++|+|||||++++.+..+. ..+.++.+.++.......++..+.+.+||+||++.+...+..++.++|+
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   86 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   86 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence            456799999999999999999999998875 5667888888887777888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 030856           85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSP  164 (170)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~  164 (170)
                      +++|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++++.+++..+++++++||+++.|++++|+
T Consensus        87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  166 (180)
T 2g6b_A           87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT  166 (180)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999887767899999999999988888888999999999999999999999999999999


Q ss_pred             HHHhh
Q 030856          165 TIRRL  169 (170)
Q Consensus       165 ~l~~~  169 (170)
                      +|.+.
T Consensus       167 ~l~~~  171 (180)
T 2g6b_A          167 AIAKE  171 (180)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99864

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.8e-39  Score=211.96  Aligned_cols=163  Identities=35%  Similarity=0.646  Sum_probs=151.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ...+||+++|.+|+|||||++++.+..+...+.++.+.++.......++..+.+.+||+||++.+...+..++.++|+++
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  100 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI  100 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence            45799999999999999999999999888888888888888888888888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      +|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|++|
T Consensus       101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  180 (191)
T 3dz8_A          101 LMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERL  180 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999988777789999999999998888889999999999999999999999999999999999


Q ss_pred             Hhh
Q 030856          167 RRL  169 (170)
Q Consensus       167 ~~~  169 (170)
                      .+.
T Consensus       181 ~~~  183 (191)
T 3dz8_A          181 VDA  183 (191)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=7.5e-38  Score=203.72  Aligned_cols=161  Identities=40%  Similarity=0.736  Sum_probs=142.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      ..++|+++|++|+|||||++++.+..+...+.++.+.++.......++..+.+.+||+||++.+...+..++.++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            46899999999999999999999998887888888888887888888888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR  167 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (170)
                      |||++++++++.+..|+..+......+.|+++|+||+|+ ..+.+..++++.+++..+++++++||++|.|++++|++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  160 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  160 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999999998887778999999999998 5566778889999999999999999999999999999998


Q ss_pred             hh
Q 030856          168 RL  169 (170)
Q Consensus       168 ~~  169 (170)
                      +.
T Consensus       161 ~~  162 (170)
T 1g16_A          161 KL  162 (170)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=5.1e-38  Score=209.21  Aligned_cols=166  Identities=25%  Similarity=0.345  Sum_probs=141.6

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh-hhhhhhcCC
Q 030856            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRDS   82 (170)
Q Consensus         4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~   82 (170)
                      .+....++|+++|++|||||||++++.+......+.++.+.+.....+.+++..+.+.+||++|.+.+.. +...++..+
T Consensus        18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~   97 (195)
T 3cbq_A           18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG   97 (195)
T ss_dssp             ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred             CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence            3455679999999999999999999986544333445555566666777888899999999999987765 777889999


Q ss_pred             cEEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 030856           83 SVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG  161 (170)
Q Consensus        83 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~  161 (170)
                      |++|+|||++++++|+.+..|+..+..... .+.|+++|+||+|+...+.+..++++.+++..++++++|||++|.|+++
T Consensus        98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~  177 (195)
T 3cbq_A           98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE  177 (195)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHH
Confidence            999999999999999999999999877654 5799999999999988888888999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 030856          162 CSPTIRRL  169 (170)
Q Consensus       162 ~~~~l~~~  169 (170)
                      +|++|++.
T Consensus       178 lf~~l~~~  185 (195)
T 3cbq_A          178 LFEGAVRQ  185 (195)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999875

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=9.5e-38  Score=202.87  Aligned_cols=162  Identities=35%  Similarity=0.610  Sum_probs=149.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ...++|+++|++|+|||||++++.+..+...+.++.+.++.......++..+.+.+||+||++.+...+..++.++|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999999888888888888888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      +|||++++++++.+..|+..+.... .+.|+++|+||+|+.+.+.+..++++.+++..+++++++||+++.|+++++++|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  161 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL  161 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence            9999999999999999999887766 689999999999998777888899999999999999999999999999999999


Q ss_pred             Hhh
Q 030856          167 RRL  169 (170)
Q Consensus       167 ~~~  169 (170)
                      .+.
T Consensus       162 ~~~  164 (168)
T 1z2a_A          162 AEK  164 (168)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=6e-38  Score=209.42  Aligned_cols=165  Identities=40%  Similarity=0.642  Sum_probs=137.7

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   84 (170)
                      ...+.++|+++|++|+|||||++++.+..+...+.++.+.++.......++..+.+.+||+||.+.+...+..++.++|+
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  103 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG  103 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence            44567999999999999999999999998877778888878877888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC------CCcccCHHHHHHHHHhcCCeEEEeecCCCCC
Q 030856           85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV------EKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (170)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  158 (170)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+.      ..+.+..++++.++...+++++++||++|.|
T Consensus       104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g  183 (199)
T 2p5s_A          104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN  183 (199)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence            9999999999999999999999887766789999999999986      4567788899999999999999999999999


Q ss_pred             hHHHHHHHHhh
Q 030856          159 IKGCSPTIRRL  169 (170)
Q Consensus       159 v~~~~~~l~~~  169 (170)
                      ++++|++|.+.
T Consensus       184 v~el~~~l~~~  194 (199)
T 2p5s_A          184 IVEAVLHLARE  194 (199)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999875

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=1.6e-37  Score=204.11  Aligned_cols=164  Identities=31%  Similarity=0.461  Sum_probs=147.2

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   84 (170)
                      ++.+.++|+++|.+|+|||||++++.+..+...+.++.+..+. .....++..+.+.+||+||++.+...+..++.++|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   83 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   83 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence            4567899999999999999999999999887777788776655 556678888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 030856           85 AVVVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCS  163 (170)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (170)
                      +++|||++++++++.+..|+..+... ...+.|+++|+||+|+...+.+..++++.++...+++++++||++|.|++++|
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  163 (181)
T 2fn4_A           84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  163 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence            99999999999999999999888554 34689999999999998878888899999999999999999999999999999


Q ss_pred             HHHHhh
Q 030856          164 PTIRRL  169 (170)
Q Consensus       164 ~~l~~~  169 (170)
                      ++|.+.
T Consensus       164 ~~l~~~  169 (181)
T 2fn4_A          164 EQLVRA  169 (181)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999865

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=5.6e-38  Score=205.88  Aligned_cols=164  Identities=32%  Similarity=0.468  Sum_probs=145.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCC-eEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   84 (170)
                      ..+.++|+++|++|+|||||++++.+..+...+.++.+.++....+..++ ..+.+.+||+||++.+...+..++.++|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            45789999999999999999999999888777778887777777777776 67899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcC--CCCe-EEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 030856           85 AVVVYDVASRQSFLNTSKWIDEVRTERG--SDVI-IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG  161 (170)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~-~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~  161 (170)
                      +++|||++++++++.+..|+..+.....  .+.| +++|+||+|+.+.+.+..++++.+++..+++++++||++|.|+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL  162 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            9999999999999999999888876432  2444 899999999987778888999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 030856          162 CSPTIRRL  169 (170)
Q Consensus       162 ~~~~l~~~  169 (170)
                      +|++|.+.
T Consensus       163 l~~~l~~~  170 (178)
T 2hxs_A          163 CFQKVAAE  170 (178)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999875

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=8.1e-38  Score=206.96  Aligned_cols=164  Identities=26%  Similarity=0.390  Sum_probs=140.7

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCc
Q 030856            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (170)
Q Consensus         4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   83 (170)
                      ....+.+||+++|++|+|||||++++.++.+...+.++.+..+ ......++..+.+.+|||||++.+... ..++.++|
T Consensus        16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~   93 (187)
T 3c5c_A           16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH   93 (187)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred             hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence            3456789999999999999999999999988877788877555 445667888899999999999988775 67899999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHHhc---CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeec-CCCCCh
Q 030856           84 VAVVVYDVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSA-KAGFNI  159 (170)
Q Consensus        84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~-~~~~~v  159 (170)
                      ++++|||++++++++.+..|+..+....   ..+.|+++|+||+|+...+.+..++++++++..++++++||| ++|.|+
T Consensus        94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv  173 (187)
T 3c5c_A           94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHV  173 (187)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccH
Confidence            9999999999999999999999887764   258999999999999887888899999999999999999999 899999


Q ss_pred             HHHHHHHHhh
Q 030856          160 KGCSPTIRRL  169 (170)
Q Consensus       160 ~~~~~~l~~~  169 (170)
                      +++|++|.+.
T Consensus       174 ~~lf~~l~~~  183 (187)
T 3c5c_A          174 QHVFHEAVRE  183 (187)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999875

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-37  Score=210.88  Aligned_cols=163  Identities=34%  Similarity=0.649  Sum_probs=142.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ...++|+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+|||||++.+...+..++..+|++|
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi   90 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence            45699999999999999999999999888777888888888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++++.++...+++++++||+++.|++++|++|
T Consensus        91 lV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  170 (223)
T 3cpj_B           91 IVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL  170 (223)
T ss_dssp             EEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988766789999999999998777888889999999999999999999999999999999


Q ss_pred             Hhh
Q 030856          167 RRL  169 (170)
Q Consensus       167 ~~~  169 (170)
                      .+.
T Consensus       171 ~~~  173 (223)
T 3cpj_B          171 INT  173 (223)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            865

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=3.3e-37  Score=200.14  Aligned_cols=161  Identities=30%  Similarity=0.515  Sum_probs=143.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      ++++|+++|++|+|||||++++.++.+...+.++.+..+ ......++..+.+.+||+||++.+...+..++.++|++++
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            579999999999999999999999888777777777544 3555677788899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhc-CCeEEEeecCCCCChHHHHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      |||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++++.+++.. +++++++||++|.|+++++++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence            999999999999999998887754 368999999999999887888889999999988 789999999999999999999


Q ss_pred             HHhh
Q 030856          166 IRRL  169 (170)
Q Consensus       166 l~~~  169 (170)
                      |.+.
T Consensus       161 l~~~  164 (167)
T 1c1y_A          161 LVRQ  164 (167)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9875

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=8.1e-37  Score=200.17  Aligned_cols=163  Identities=38%  Similarity=0.612  Sum_probs=144.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ..+.++|+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            35679999999999999999999999988888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCCcccCHHHHHHHHH-hcCCeEEEeecCCCCChH
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-ELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~v~  160 (170)
                      ++|||++++.+++.+..|+..+.....    .+.|+++|+||+|+. .+.+..++++.+++ ..+++++++||++|.|++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  162 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA  162 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence            999999999999999999999877654    678999999999987 56677888899988 667899999999999999


Q ss_pred             HHHHHHHhh
Q 030856          161 GCSPTIRRL  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      ++|++|.+.
T Consensus       163 ~l~~~l~~~  171 (177)
T 1wms_A          163 AAFEEAVRR  171 (177)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999875

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=2.8e-37  Score=200.95  Aligned_cols=161  Identities=26%  Similarity=0.374  Sum_probs=131.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh-hhhhhhcCCcEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRDSSVAVV   87 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i~   87 (170)
                      .+||+++|++|+|||||++++.+........++.+.+........++..+.+.+||+||.+.+.. ....++.++|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            47999999999999999999998776655556666677777788889999999999999988876 67778899999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      |||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            9999999999999999999887764 489999999999998888899999999999999999999999999999999999


Q ss_pred             Hhh
Q 030856          167 RRL  169 (170)
Q Consensus       167 ~~~  169 (170)
                      .+.
T Consensus       162 ~~~  164 (169)
T 3q85_A          162 VRQ  164 (169)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.9e-37  Score=204.64  Aligned_cols=167  Identities=26%  Similarity=0.436  Sum_probs=146.0

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhc
Q 030856            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (170)
Q Consensus         1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   80 (170)
                      |++++..+.++|+++|++|+|||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++.
T Consensus        10 m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   88 (194)
T 2atx_A           10 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP   88 (194)
T ss_dssp             CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCT
T ss_pred             cCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcC
Confidence            4455556789999999999999999999999988777777776444 445667778889999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcCC-
Q 030856           81 DSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-  146 (170)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-  146 (170)
                      ++|++++|||++++++++.+. .|+..+.... ++.|+++|+||+|+...            +.+..+++..+++..++ 
T Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  167 (194)
T 2atx_A           89 MTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGAC  167 (194)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCS
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCc
Confidence            999999999999999999987 7888887764 58999999999999753            46778999999999998 


Q ss_pred             eEEEeecCCCCChHHHHHHHHhh
Q 030856          147 MFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       147 ~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      ++++|||++|.|++++|++|.+.
T Consensus       168 ~~~~~Sa~~g~gi~~l~~~l~~~  190 (194)
T 2atx_A          168 CYVECSALTQKGLKTVFDEAIIA  190 (194)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHH
T ss_pred             EEEEeeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999999875

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=2.7e-37  Score=208.43  Aligned_cols=164  Identities=27%  Similarity=0.463  Sum_probs=142.9

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCc
Q 030856            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (170)
Q Consensus         4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   83 (170)
                      ....+.+||+++|.+|+|||||++++.++.+...+.++.+.++ ......++..+.+.+||++|++.+..++..++.++|
T Consensus        22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  100 (214)
T 3q3j_B           22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD  100 (214)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence            3456789999999999999999999999998888888887665 455667778889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHh-HHHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcCC-eEE
Q 030856           84 VAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFI  149 (170)
Q Consensus        84 ~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~  149 (170)
                      ++|+|||++++++++. +..|+..+.... ++.|+++|+||+|+.+.            +.+..++++.+++.+++ +++
T Consensus       101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  179 (214)
T 3q3j_B          101 AVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYL  179 (214)
T ss_dssp             EEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEE
Confidence            9999999999999999 689999888775 68999999999999753            67889999999999999 999


Q ss_pred             EeecCCCCC-hHHHHHHHHhh
Q 030856          150 ETSAKAGFN-IKGCSPTIRRL  169 (170)
Q Consensus       150 ~~S~~~~~~-v~~~~~~l~~~  169 (170)
                      +|||++|.| ++++|++|.+.
T Consensus       180 e~SA~~g~g~v~~lf~~l~~~  200 (214)
T 3q3j_B          180 EGSAFTSEKSIHSIFRTASML  200 (214)
T ss_dssp             ECCTTTCHHHHHHHHHHHHHH
T ss_pred             EeccCCCcccHHHHHHHHHHH
Confidence            999999998 99999999874

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.6e-37  Score=204.68  Aligned_cols=166  Identities=33%  Similarity=0.451  Sum_probs=143.6

Q ss_pred             CCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcC
Q 030856            2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD   81 (170)
Q Consensus         2 ~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   81 (170)
                      ..+...+.++|+++|.+|+|||||++++.++.+...+.++.+..+ ......++..+.+.+||+||.+. ...+..++..
T Consensus        21 ~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~   98 (196)
T 2atv_A           21 QSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRW   98 (196)
T ss_dssp             ------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHH
T ss_pred             hccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhcc
Confidence            345567789999999999999999999999988777777777544 44566788889999999999887 7788889999


Q ss_pred             CcEEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCC-Ch
Q 030856           82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF-NI  159 (170)
Q Consensus        82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-~v  159 (170)
                      +|++++|||++++++++.+..|+..+..... .+.|+++|+||+|+...+.+..++++.+++..++++++|||++|. |+
T Consensus        99 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi  178 (196)
T 2atv_A           99 GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNI  178 (196)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCH
Confidence            9999999999999999999999988877543 689999999999998878888899999999999999999999999 99


Q ss_pred             HHHHHHHHhh
Q 030856          160 KGCSPTIRRL  169 (170)
Q Consensus       160 ~~~~~~l~~~  169 (170)
                      +++|++|.+.
T Consensus       179 ~~l~~~l~~~  188 (196)
T 2atv_A          179 TEIFYELCRE  188 (196)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999875

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=7.1e-37  Score=198.58  Aligned_cols=162  Identities=33%  Similarity=0.556  Sum_probs=142.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ++.++|+++|++|+|||||++++.+..+...+.++.+..+ ......++..+.+.+||+||.+.+...+..++.++|+++
T Consensus         2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   80 (168)
T 1u8z_A            2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   80 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence            4579999999999999999999999888777777766444 344567788889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      +|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+++..++++.+++..+++++++||++|.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (168)
T 1u8z_A           81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence            99999999999999999999887664 58999999999999887788889999999999999999999999999999999


Q ss_pred             HHhh
Q 030856          166 IRRL  169 (170)
Q Consensus       166 l~~~  169 (170)
                      |.+.
T Consensus       161 l~~~  164 (168)
T 1u8z_A          161 LMRE  164 (168)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9875

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=1.6e-36  Score=202.90  Aligned_cols=163  Identities=37%  Similarity=0.646  Sum_probs=144.5

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeE--------------------------
Q 030856            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT--------------------------   57 (170)
Q Consensus         4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------   57 (170)
                      |+..+.++|+++|++|+|||||+++|.+..+...+.++.+.++....+..++..                          
T Consensus         2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (208)
T 3clv_A            2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN   81 (208)
T ss_dssp             CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence            345678999999999999999999999998887888888877777776666544                          


Q ss_pred             -----------EEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 030856           58 -----------VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL  126 (170)
Q Consensus        58 -----------~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~  126 (170)
                                 ..+.+||+||++.+......++..+|++++|||++++.+++.+..|+..+....  +.|+++|+||+| 
T Consensus        82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-  158 (208)
T 3clv_A           82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-  158 (208)
T ss_dssp             ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-
T ss_pred             ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-
Confidence                       789999999999999999999999999999999999999999999999988765  399999999999 


Q ss_pred             CCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      ...+.+..++++++++..+++++++||++|.|++++|++|.+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  201 (208)
T 3clv_A          159 KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEE  201 (208)
T ss_dssp             CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Confidence            5667788899999999999999999999999999999999875

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-37  Score=208.47  Aligned_cols=165  Identities=32%  Similarity=0.449  Sum_probs=141.3

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCc
Q 030856            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (170)
Q Consensus         4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   83 (170)
                      ++..+.+||+++|.+|+|||||++++.+..+...+.++.+..+ ......++..+.+.+|||||.+.+...+..++.++|
T Consensus        19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   97 (201)
T 3oes_A           19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH   97 (201)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred             CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence            4456789999999999999999999999988877778877655 555556667789999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHH
Q 030856           84 VAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGC  162 (170)
Q Consensus        84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~  162 (170)
                      ++++|||++++++++.+..|+..+..... .+.|+++|+||+|+...+.+..++++.+++..+++++++||++|.|++++
T Consensus        98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  177 (201)
T 3oes_A           98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI  177 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence            99999999999999999999998876543 57899999999999888889999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 030856          163 SPTIRRL  169 (170)
Q Consensus       163 ~~~l~~~  169 (170)
                      |++|.+.
T Consensus       178 ~~~l~~~  184 (201)
T 3oes_A          178 FTKVIQE  184 (201)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999875

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=3.1e-37  Score=208.46  Aligned_cols=164  Identities=38%  Similarity=0.637  Sum_probs=146.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCe----------EEEEEEEecCChhhhhhhh
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRLQLWDTAGQERFRSLI   75 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~g~~~~~~~~   75 (170)
                      ..+.+||+++|++|+|||||++++.+..+...+.++.+.++....+.+++.          .+.+.+||+||++.+...+
T Consensus        22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~  101 (217)
T 2f7s_A           22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT  101 (217)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence            355799999999999999999999998887777888887777777666655          7889999999999999999


Q ss_pred             hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecC
Q 030856           76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK  154 (170)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  154 (170)
                      ..++..+|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+.+..+++++++...++++++|||+
T Consensus       102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  181 (217)
T 2f7s_A          102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAA  181 (217)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTT
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECC
Confidence            9999999999999999999999999999887766544 679999999999998877888899999999999999999999


Q ss_pred             CCCChHHHHHHHHhh
Q 030856          155 AGFNIKGCSPTIRRL  169 (170)
Q Consensus       155 ~~~~v~~~~~~l~~~  169 (170)
                      ++.|++++|++|.+.
T Consensus       182 ~g~gi~~l~~~l~~~  196 (217)
T 2f7s_A          182 TGQNVEKAVETLLDL  196 (217)
T ss_dssp             TTBTHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
Confidence            999999999999875

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.4e-36  Score=201.92  Aligned_cols=162  Identities=39%  Similarity=0.682  Sum_probs=147.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .+.++|+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|+++
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   92 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   92 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            46799999999999999999999999888888888888888888888888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      +|||++++.+++.+..|+..+..... .+.|+++|+||+|+. .+.+..+++..+++..+++++++||+++.|++++|++
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  171 (195)
T 1x3s_A           93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE  171 (195)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999999999998877543 579999999999984 4567788899999999999999999999999999999


Q ss_pred             HHhh
Q 030856          166 IRRL  169 (170)
Q Consensus       166 l~~~  169 (170)
                      |.+.
T Consensus       172 l~~~  175 (195)
T 1x3s_A          172 LVEK  175 (195)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9875

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=9.8e-37  Score=201.29  Aligned_cols=159  Identities=19%  Similarity=0.336  Sum_probs=139.0

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCc
Q 030856            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (170)
Q Consensus         4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   83 (170)
                      +...+.+||+++|++|+|||||++++.++.+...+.++.+ .+ ...+.+++..+.+.+|||+|++.+.     ++.++|
T Consensus        15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~   87 (184)
T 3ihw_A           15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD   87 (184)
T ss_dssp             -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred             CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence            3456789999999999999999999999988777767633 33 4677788889999999999988766     778899


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCC--CCcccCHHHHHHHHHhcC-CeEEEeecCCCCCh
Q 030856           84 VAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLV--EKRQVSIEEGEAKSRELN-VMFIETSAKAGFNI  159 (170)
Q Consensus        84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v  159 (170)
                      ++++|||++++++++.+..|+..+..... .+.|+++|+||+|+.  ..+.+..++++.++..++ +++++|||++|.|+
T Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv  167 (184)
T 3ihw_A           88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV  167 (184)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence            99999999999999999999999987654 579999999999984  567788899999999997 89999999999999


Q ss_pred             HHHHHHHHhh
Q 030856          160 KGCSPTIRRL  169 (170)
Q Consensus       160 ~~~~~~l~~~  169 (170)
                      +++|++|.+.
T Consensus       168 ~~lf~~l~~~  177 (184)
T 3ihw_A          168 ERVFQDVAQK  177 (184)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999875

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=1.4e-36  Score=202.06  Aligned_cols=162  Identities=31%  Similarity=0.479  Sum_probs=143.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ..+.+||+++|.+|+|||||++++.+..+...+.++.+..+. .....++..+.+.+|||||++.+...+..++.++|++
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   98 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV   98 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence            356799999999999999999999999988788888876555 4566788889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC--cccCHHHHHHHHHhcCCe-EEEeecCCCCChHH
Q 030856           86 VVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK--RQVSIEEGEAKSRELNVM-FIETSAKAGFNIKG  161 (170)
Q Consensus        86 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~v~~  161 (170)
                      ++|||++++++++.+ ..|+..+.... ++.|+++|+||+|+...  +.+..++++.+++..++. ++++||++|.|+++
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  177 (194)
T 3reg_A           99 LLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE  177 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHH
Confidence            999999999999997 77877777654 68999999999998753  678889999999999997 99999999999999


Q ss_pred             HHHHHHhh
Q 030856          162 CSPTIRRL  169 (170)
Q Consensus       162 ~~~~l~~~  169 (170)
                      +|++|.+.
T Consensus       178 l~~~l~~~  185 (194)
T 3reg_A          178 VFEKSVDC  185 (194)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999875

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.6e-36  Score=204.31  Aligned_cols=162  Identities=41%  Similarity=0.726  Sum_probs=147.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ...++|+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++..+|+++
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   97 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII   97 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            45799999999999999999999999888788888888888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+ ..+.+..++++.++...+++++++||+++.|++++|++|
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  176 (213)
T 3cph_A           98 LVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  176 (213)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999998877678999999999998 556677888899999999999999999999999999999


Q ss_pred             Hhh
Q 030856          167 RRL  169 (170)
Q Consensus       167 ~~~  169 (170)
                      .+.
T Consensus       177 ~~~  179 (213)
T 3cph_A          177 AKL  179 (213)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=5.7e-37  Score=198.84  Aligned_cols=161  Identities=34%  Similarity=0.511  Sum_probs=144.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      ++++|+++|++|+|||||++++.++.+...+.++.+. ........++....+.+||+||++.+...+..++.++|++++
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            5699999999999999999999998887776676653 335666778888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      |||++++.+++.+..|+..+..... .+.|+++|+||+|+...+++..++++.+++..+++++++||++|.|+++++++|
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  160 (167)
T 1kao_A           81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence            9999999999999999988877654 689999999999998778888899999999999999999999999999999999


Q ss_pred             Hhh
Q 030856          167 RRL  169 (170)
Q Consensus       167 ~~~  169 (170)
                      .+.
T Consensus       161 ~~~  163 (167)
T 1kao_A          161 VRQ  163 (167)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=2.4e-36  Score=202.44  Aligned_cols=164  Identities=32%  Similarity=0.555  Sum_probs=146.3

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   84 (170)
                      +..+.++|+++|++|+|||||++++.+..+...+.++.+..+ ......++..+.+.+||+||.+.+...+..++..+|+
T Consensus        10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   88 (206)
T 2bov_A           10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   88 (206)
T ss_dssp             -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence            345679999999999999999999999888777777776444 4556678888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 030856           85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCS  163 (170)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (170)
                      +++|||++++++++.+..|+..+..... .+.|+++|+||+|+...+++..++++.++..++++++++||++|.|++++|
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  168 (206)
T 2bov_A           89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF  168 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999999999999887654 589999999999998878888899999999999999999999999999999


Q ss_pred             HHHHhh
Q 030856          164 PTIRRL  169 (170)
Q Consensus       164 ~~l~~~  169 (170)
                      ++|.+.
T Consensus       169 ~~l~~~  174 (206)
T 2bov_A          169 FDLMRE  174 (206)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999865

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.6e-36  Score=198.36  Aligned_cols=162  Identities=33%  Similarity=0.440  Sum_probs=132.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh--hhhhhhhhhcCCcE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--FRSLIPSYIRDSSV   84 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~d~   84 (170)
                      .+.++|+++|++|+|||||++++.+......+ ++.+.+........++..+.+.+||+||.+.  +......++..+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            45799999999999999999999988765432 3455566666777888888999999999887  56677788899999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 030856           85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCS  163 (170)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (170)
                      +++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+++..++++.++...+++++++||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            999999999999999999988887653 3579999999999998888888889999999999999999999999999999


Q ss_pred             HHHHhh
Q 030856          164 PTIRRL  169 (170)
Q Consensus       164 ~~l~~~  169 (170)
                      ++|.+.
T Consensus       161 ~~l~~~  166 (175)
T 2nzj_A          161 EGVVRQ  166 (175)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999865

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=1.6e-36  Score=203.44  Aligned_cols=167  Identities=40%  Similarity=0.656  Sum_probs=145.6

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhc
Q 030856            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (170)
Q Consensus         1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   80 (170)
                      |.. ...+.++|+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.
T Consensus         1 M~~-~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   79 (207)
T 1vg8_A            1 MTS-RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYR   79 (207)
T ss_dssp             -------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGT
T ss_pred             CCc-ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHh
Confidence            444 3567899999999999999999999999888888888888888888888888899999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCCcccCHHHHHHHHH-hcCCeEEEeecCC
Q 030856           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-ELNVMFIETSAKA  155 (170)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~  155 (170)
                      ++|++|+|||++++.+++.+..|+..+.....    .+.|+++|+||+|+. .+.+..++++.++. ..+++++++||++
T Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  158 (207)
T 1vg8_A           80 GADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKE  158 (207)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTT
T ss_pred             CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCC
Confidence            99999999999999999999999998877653    478999999999987 55667788888887 6778999999999


Q ss_pred             CCChHHHHHHHHhh
Q 030856          156 GFNIKGCSPTIRRL  169 (170)
Q Consensus       156 ~~~v~~~~~~l~~~  169 (170)
                      |.|++++|++|.+.
T Consensus       159 g~gi~~l~~~l~~~  172 (207)
T 1vg8_A          159 AINVEQAFQTIARN  172 (207)
T ss_dssp             TBSHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999999999875

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=2e-36  Score=199.79  Aligned_cols=164  Identities=32%  Similarity=0.555  Sum_probs=144.8

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   84 (170)
                      ...+.+||+++|++|+|||||++++.+..+...+.++.+..+ ......++..+.+.+||+||++.+...+..++..+|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (187)
T 2a9k_A           14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   92 (187)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence            345679999999999999999999999888777777766444 4455677888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 030856           85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCS  163 (170)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (170)
                      +++|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++++.+++.++++++++||+++.|++++|
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  172 (187)
T 2a9k_A           93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF  172 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence            9999999999999999999999887664 589999999999998877888899999999999999999999999999999


Q ss_pred             HHHHhh
Q 030856          164 PTIRRL  169 (170)
Q Consensus       164 ~~l~~~  169 (170)
                      ++|.+.
T Consensus       173 ~~l~~~  178 (187)
T 2a9k_A          173 FDLMRE  178 (187)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999875

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=6.7e-37  Score=201.24  Aligned_cols=168  Identities=38%  Similarity=0.607  Sum_probs=131.7

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeC-CeEEEEEEEecCChhhhhhhhhhhh
Q 030856            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYI   79 (170)
Q Consensus         1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~   79 (170)
                      |+. ...+.++|+++|++|+|||||++++.+..+...+.++.+.++....+..+ +....+.+||+||++.+...+..++
T Consensus         1 Ms~-~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   79 (182)
T 1ky3_A            1 MSS-RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFY   79 (182)
T ss_dssp             -------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCS
T ss_pred             CCc-ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHh
Confidence            443 44678999999999999999999999998887888888877777777666 5567899999999999999999999


Q ss_pred             cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC----CCCeEEEEEeCCCCCC-CcccCHHHHHHHHH-hcCCeEEEeec
Q 030856           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVE-KRQVSIEEGEAKSR-ELNVMFIETSA  153 (170)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~vvv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~S~  153 (170)
                      .++|++++|||++++.+++.+..|+..+.....    .+.|+++|+||+|+.. .+.+..++++.++. ..+++++++||
T Consensus        80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  159 (182)
T 1ky3_A           80 RGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSA  159 (182)
T ss_dssp             TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBT
T ss_pred             hcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEec
Confidence            999999999999999999999999998877653    6799999999999853 45567888888888 56789999999


Q ss_pred             CCCCChHHHHHHHHhh
Q 030856          154 KAGFNIKGCSPTIRRL  169 (170)
Q Consensus       154 ~~~~~v~~~~~~l~~~  169 (170)
                      ++|.|++++|++|.+.
T Consensus       160 ~~~~gi~~l~~~l~~~  175 (182)
T 1ky3_A          160 KNAINVDTAFEEIARS  175 (182)
T ss_dssp             TTTBSHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHH
Confidence            9999999999999875

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=1.6e-36  Score=196.85  Aligned_cols=160  Identities=30%  Similarity=0.421  Sum_probs=120.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      +.+||+++|++|+|||||++++.+.... ...++.+..+ ......++..+.+.+||+||++.+...+..++..+|++++
T Consensus         1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   78 (166)
T 3q72_A            1 SVYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVI   78 (166)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEE
Confidence            3589999999999999999999876553 2233333333 4556678888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      |||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++++.++...+++++++||++|.|++++|++|
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  158 (166)
T 3q72_A           79 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV  158 (166)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Confidence            999999999999999999887753 3689999999999998888899999999999999999999999999999999999


Q ss_pred             Hhh
Q 030856          167 RRL  169 (170)
Q Consensus       167 ~~~  169 (170)
                      .+.
T Consensus       159 ~~~  161 (166)
T 3q72_A          159 VRQ  161 (166)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=2.5e-36  Score=198.10  Aligned_cols=159  Identities=20%  Similarity=0.358  Sum_probs=134.7

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCc
Q 030856            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (170)
Q Consensus         4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   83 (170)
                      |...+.+||+++|++|+|||||++++.++.+.. +.++.+.. ....+..++..+.+.+||+||++.     ..+++++|
T Consensus         2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d   74 (178)
T 2iwr_A            2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWAD   74 (178)
T ss_dssp             CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCS
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCC
Confidence            345678999999999999999999999988765 66776633 356667788889999999999875     46788899


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHHhc---CCCCeEEEEEeCCCCC--CCcccCHHHHHHHHHhc-CCeEEEeecCCCC
Q 030856           84 VAVVVYDVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLV--EKRQVSIEEGEAKSREL-NVMFIETSAKAGF  157 (170)
Q Consensus        84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~vvv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~  157 (170)
                      ++++|||++++++++.+..|+..+....   .++.|+++|+||+|+.  ..+.+..+++++++... +++++++||++|.
T Consensus        75 ~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  154 (178)
T 2iwr_A           75 AVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGL  154 (178)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTB
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccC
Confidence            9999999999999999999766655443   3689999999999984  45678889999999886 6899999999999


Q ss_pred             ChHHHHHHHHhh
Q 030856          158 NIKGCSPTIRRL  169 (170)
Q Consensus       158 ~v~~~~~~l~~~  169 (170)
                      |++++|++|.+.
T Consensus       155 ~i~~lf~~l~~~  166 (178)
T 2iwr_A          155 NVDRVFQEVAQK  166 (178)
T ss_dssp             THHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999999999864

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=2.2e-37  Score=207.66  Aligned_cols=163  Identities=28%  Similarity=0.466  Sum_probs=109.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC--CCCCCccceeeeeeeEEEEEeCCe--EEEEEEEecCChhhhhhhhhhhhcCC
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAGQERFRSLIPSYIRDS   82 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~   82 (170)
                      ...++|+++|++|+|||||++++.+.  .+...+.++.+.++....+..++.  .+.+.+||+||.+.+...+..++.++
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            45689999999999999999999998  666777788877777777777776  88999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHhHHHHHHHHHHhcC---CCCeEEEEEeCCCCCC-CcccCHHHHHHHHHhcCCeEEEeecCC-CC
Q 030856           83 SVAVVVYDVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVE-KRQVSIEEGEAKSRELNVMFIETSAKA-GF  157 (170)
Q Consensus        83 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~vvv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~-~~  157 (170)
                      |++++|||++++.+++.+..|+..+.....   .+.|+++|+||+|+.. .+.+..++++.+++.++++++++||++ +.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999999988775   6899999999999987 778888999999999999999999999 99


Q ss_pred             ChHHHHHHHHhh
Q 030856          158 NIKGCSPTIRRL  169 (170)
Q Consensus       158 ~v~~~~~~l~~~  169 (170)
                      |++++|++|.+.
T Consensus       178 gi~~l~~~i~~~  189 (208)
T 2yc2_C          178 DADAPFLSIATT  189 (208)
T ss_dssp             --CHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999999999874

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.3e-36  Score=203.04  Aligned_cols=164  Identities=29%  Similarity=0.413  Sum_probs=136.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh-hhhhhhhhhcCCc
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRDSS   83 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d   83 (170)
                      ....+||+++|.+|||||||++++.+.... ....++.+.++....+.+++..+.+.+|||+|.+. +..+...++..+|
T Consensus        34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~  113 (211)
T 2g3y_A           34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD  113 (211)
T ss_dssp             -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence            456799999999999999999999964331 22234466666677777888889999999999876 4556677788999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHH
Q 030856           84 VAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGC  162 (170)
Q Consensus        84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~  162 (170)
                      ++|+|||++++++|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..++++.++..+++++++|||++|.|++++
T Consensus       114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~el  193 (211)
T 2g3y_A          114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL  193 (211)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            9999999999999999999988776542 357999999999999877888888888999999999999999999999999


Q ss_pred             HHHHHhh
Q 030856          163 SPTIRRL  169 (170)
Q Consensus       163 ~~~l~~~  169 (170)
                      |++|++.
T Consensus       194 f~~l~~~  200 (211)
T 2g3y_A          194 FEGIVRQ  200 (211)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999864

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.6e-36  Score=195.11  Aligned_cols=162  Identities=29%  Similarity=0.461  Sum_probs=141.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      +.++|+++|++|+|||||++++.++.+...+.++.+..+ ......++..+.+.+||+||.+.+...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            468999999999999999999999887766667766444 3445567778899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      |||++++++++.+..|+..+.....  ++.|+++|+||+|+...+++..++++.++...+++++++||++|.|++++|++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            9999999999999999888776543  57999999999999887888888899999999999999999999999999999


Q ss_pred             HHhhC
Q 030856          166 IRRLI  170 (170)
Q Consensus       166 l~~~i  170 (170)
                      |.+.+
T Consensus       161 l~~~~  165 (172)
T 2erx_A          161 LLNLE  165 (172)
T ss_dssp             HHHTC
T ss_pred             HHHHH
Confidence            98753

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=1.1e-35  Score=196.62  Aligned_cols=161  Identities=30%  Similarity=0.517  Sum_probs=140.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .++++|+++|++|+|||||++++.+..+...+.++.. +........++..+.+.+||+||++.+...+..++.++|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            4579999999999999999999999888777666664 455566667888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      +|||++++++++.+..|+..+..... .+.|+++|+||+|+. .+....+.++.+++..+++++++||++|.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  159 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT  159 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999998877543 689999999999986 4566788899999999999999999999999999999


Q ss_pred             HHhh
Q 030856          166 IRRL  169 (170)
Q Consensus       166 l~~~  169 (170)
                      |.+.
T Consensus       160 l~~~  163 (189)
T 4dsu_A          160 LVRE  163 (189)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9875

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=3.5e-36  Score=198.58  Aligned_cols=162  Identities=24%  Similarity=0.462  Sum_probs=140.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ....++|+++|++|+|||||++++.+..+...+.++.+..+ ......++..+.+.+||+||++.+...+..++.++|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            46789999999999999999999999988777778777555 34556777888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcC-CeEEEe
Q 030856           86 VVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELN-VMFIET  151 (170)
Q Consensus        86 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~  151 (170)
                      ++|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.            +.+..++++.+++.++ +++++|
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  161 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  161 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence            999999999999998 78888887654 58999999999998742            5678889999999988 699999


Q ss_pred             ecC-CCCChHHHHHHHHhh
Q 030856          152 SAK-AGFNIKGCSPTIRRL  169 (170)
Q Consensus       152 S~~-~~~~v~~~~~~l~~~  169 (170)
                      ||+ ++.|++++|++|.+.
T Consensus       162 Sa~~~~~gi~~l~~~i~~~  180 (184)
T 1m7b_A          162 SALQSENSVRDIFHVATLA  180 (184)
T ss_dssp             BTTTBHHHHHHHHHHHHHH
T ss_pred             eecCCCcCHHHHHHHHHHH
Confidence            999 689999999999875

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=1.6e-36  Score=204.29  Aligned_cols=165  Identities=33%  Similarity=0.527  Sum_probs=142.6

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCC
Q 030856            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS   82 (170)
Q Consensus         3 ~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   82 (170)
                      .|...+.++|+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..++.++
T Consensus         3 ~m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   81 (212)
T 2j0v_A            3 HMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGA   81 (212)
T ss_dssp             CCSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTC
T ss_pred             CCCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCC
Confidence            45667889999999999999999999999888777777776444 44566778889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCcc--------cCHHHHHHHHHhcCC-eEEEee
Q 030856           83 SVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--------VSIEEGEAKSRELNV-MFIETS  152 (170)
Q Consensus        83 d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~S  152 (170)
                      |++++|||++++++++.+. .|+..+.... ++.|+++|+||+|+...+.        +..++++.++..+++ +++++|
T Consensus        82 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (212)
T 2j0v_A           82 DIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECS  160 (212)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEcc
Confidence            9999999999999999986 7888887765 5899999999999876544        377888999999996 999999


Q ss_pred             cCCCCChHHHHHHHHhh
Q 030856          153 AKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       153 ~~~~~~v~~~~~~l~~~  169 (170)
                      |++|.|++++|++|.+.
T Consensus       161 a~~g~gi~~l~~~l~~~  177 (212)
T 2j0v_A          161 SKTQQNVKAVFDTAIKV  177 (212)
T ss_dssp             TTTCTTHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999999999864

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=7.5e-36  Score=196.92  Aligned_cols=161  Identities=30%  Similarity=0.505  Sum_probs=141.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ++.++|+++|++|+|||||++++.+..+...+.++.+..+ ......++..+.+.+||+||++.+...+..++.++|+++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            5679999999999999999999999888777777766433 455667888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcCC-eEEEee
Q 030856           87 VVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETS  152 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  152 (170)
                      +|||++++.+++.+. .|+..+.... ++.|+++|+||+|+...            +.+..+++..+++..++ ++++||
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence            999999999999987 7888887765 48999999999998653            56778889999999997 999999


Q ss_pred             cCCCCChHHHHHHHHhh
Q 030856          153 AKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       153 ~~~~~~v~~~~~~l~~~  169 (170)
                      |++|.|++++|++|.+.
T Consensus       161 a~~g~gi~~l~~~l~~~  177 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIRA  177 (186)
T ss_dssp             TTTCTTHHHHHHHHHHH
T ss_pred             CCCccCHHHHHHHHHHH
Confidence            99999999999999875

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=8.1e-36  Score=199.27  Aligned_cols=163  Identities=33%  Similarity=0.487  Sum_probs=134.7

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   84 (170)
                      ...+.++|+++|++|+|||||++++.+..+...+.++.+..+ ......++..+.+.+||+||.+.+...+..++.++|+
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI   94 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence            345689999999999999999999999887777777776443 4556678888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCC------------CcccCHHHHHHHHHhcCC-eEEE
Q 030856           85 AVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIE  150 (170)
Q Consensus        85 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~  150 (170)
                      +++|||++++++++.+. .|+..+.... ++.|+++|+||+|+..            .+.+..+++..++...++ ++++
T Consensus        95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  173 (201)
T 2q3h_A           95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE  173 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence            99999999999999996 7888887765 5899999999999875            356778899999999998 9999


Q ss_pred             eecCCCCChHHHHHHHHhh
Q 030856          151 TSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       151 ~S~~~~~~v~~~~~~l~~~  169 (170)
                      |||++|.|++++|++|.+.
T Consensus       174 ~Sa~~g~gi~~l~~~l~~~  192 (201)
T 2q3h_A          174 CSALTQKNLKEVFDAAIVA  192 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHH
T ss_pred             EecCCCCCHHHHHHHHHHH
Confidence            9999999999999999864

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=3.8e-36  Score=201.55  Aligned_cols=162  Identities=24%  Similarity=0.464  Sum_probs=141.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ....+||+++|++|+|||||++++.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..++.++|++
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  103 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV  103 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence            35679999999999999999999999988877778877555 34556677888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCC------------CcccCHHHHHHHHHhcC-CeEEEe
Q 030856           86 VVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELN-VMFIET  151 (170)
Q Consensus        86 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~  151 (170)
                      |+|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+            .+.+..++++.+++.++ +++++|
T Consensus       104 ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  182 (205)
T 1gwn_A          104 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  182 (205)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence            999999999999998 78888887664 5899999999999864            25678889999999988 699999


Q ss_pred             ecC-CCCChHHHHHHHHhh
Q 030856          152 SAK-AGFNIKGCSPTIRRL  169 (170)
Q Consensus       152 S~~-~~~~v~~~~~~l~~~  169 (170)
                      ||+ ++.|++++|++|.+.
T Consensus       183 SAk~~~~gv~~lf~~l~~~  201 (205)
T 1gwn_A          183 SALQSENSVRDIFHVATLA  201 (205)
T ss_dssp             CTTTCHHHHHHHHHHHHHH
T ss_pred             eeccCCcCHHHHHHHHHHH
Confidence            999 689999999999875

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=2.4e-36  Score=204.25  Aligned_cols=164  Identities=29%  Similarity=0.467  Sum_probs=142.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeC-CeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   84 (170)
                      ....+||+++|.+|+|||||++++.++.+...+.++.+........... +..+.+.+|||||.+.+...+..++.++|+
T Consensus         8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (218)
T 4djt_A            8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG   87 (218)
T ss_dssp             --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred             ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence            4567999999999999999999999988877777777766666665444 344889999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 030856           85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSP  164 (170)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~  164 (170)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+.+..++...+++++++||++|.|++++|+
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  167 (218)
T 4djt_A           88 AILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFL  167 (218)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Confidence            99999999999999999999999888777799999999999988778888999999999999999999999999999999


Q ss_pred             HHHhh
Q 030856          165 TIRRL  169 (170)
Q Consensus       165 ~l~~~  169 (170)
                      +|.+.
T Consensus       168 ~l~~~  172 (218)
T 4djt_A          168 HLARI  172 (218)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=1.8e-35  Score=195.91  Aligned_cols=164  Identities=29%  Similarity=0.500  Sum_probs=131.8

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCc
Q 030856            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (170)
Q Consensus         4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   83 (170)
                      .+.++.++|+++|.+|+|||||++++.++.+...+.++.+.. .......++..+.+.+||+||.+.+...+..++..+|
T Consensus        16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   94 (190)
T 3con_A           16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE   94 (190)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC-----------CTTCS
T ss_pred             ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceE-EEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCC
Confidence            345678999999999999999999999988776666666533 3455667788889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHH
Q 030856           84 VAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGC  162 (170)
Q Consensus        84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~  162 (170)
                      ++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. +....++++++++..+++++++||+++.|++++
T Consensus        95 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  173 (190)
T 3con_A           95 GFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDA  173 (190)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            99999999999999999999988877654 5799999999999866 566788999999999999999999999999999


Q ss_pred             HHHHHhh
Q 030856          163 SPTIRRL  169 (170)
Q Consensus       163 ~~~l~~~  169 (170)
                      +++|.+.
T Consensus       174 ~~~l~~~  180 (190)
T 3con_A          174 FYTLVRE  180 (190)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999864

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.3e-38  Score=212.71  Aligned_cols=164  Identities=39%  Similarity=0.669  Sum_probs=140.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .+.+||+++|.+|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..++.++|+++
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  110 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII  110 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence            45799999999999999999999999888888888888888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      +|||++++++++.+..|+..+......+.|+++|+||+|+...+.+..++++.++...+++++++||++|.|++++|++|
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l  190 (199)
T 3l0i_B          111 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM  190 (199)
T ss_dssp             ECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999977766789999999999998877777778889999999999999999999999999999


Q ss_pred             HhhC
Q 030856          167 RRLI  170 (170)
Q Consensus       167 ~~~i  170 (170)
                      .+.+
T Consensus       191 ~~~l  194 (199)
T 3l0i_B          191 AAEI  194 (199)
T ss_dssp             TTTT
T ss_pred             HHHH
Confidence            8754

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=100.00  E-value=1.2e-35  Score=198.96  Aligned_cols=163  Identities=30%  Similarity=0.487  Sum_probs=139.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ..+.+||+++|.+|+|||||++++.+..+...+.++.+ +........++..+.+.+|||||.+.+...+..++.++|++
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  105 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  105 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            35679999999999999999999999888777777765 44555666778888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCc------------ccCHHHHHHHHHhcCC-eEEEe
Q 030856           86 VVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSRELNV-MFIET  151 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~  151 (170)
                      ++|||++++.+++.+. .|+..+.... ++.|+++|+||+|+...+            .+..+++..+++..++ ++++|
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  184 (204)
T 4gzl_A          106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence            9999999999999997 7888887765 689999999999987653            3778889999999997 69999


Q ss_pred             ecCCCCChHHHHHHHHhhC
Q 030856          152 SAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       152 S~~~~~~v~~~~~~l~~~i  170 (170)
                      ||++|.|++++|++|.+.+
T Consensus       185 SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             CTTTCTTHHHHHHHHHHTT
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998864

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=2.8e-35  Score=196.80  Aligned_cols=161  Identities=32%  Similarity=0.530  Sum_probs=141.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ..++||+++|.+|+|||||++++.+..+...+.++.+.++. ..+..++..+.+.+||+||++.+...+..++.++|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            45799999999999999999999999888777777775554 34567788889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcCC-eEEEee
Q 030856           87 VVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETS  152 (170)
Q Consensus        87 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  152 (170)
                      +|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.            +.+..++++.+++..++ ++++||
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS  180 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence            99999999999998 67877776654 58999999999999765            45778889999999998 999999


Q ss_pred             cCCCCChHHHHHHHHhh
Q 030856          153 AKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       153 ~~~~~~v~~~~~~l~~~  169 (170)
                      |++|.|++++|++|.+.
T Consensus       181 A~~g~gi~~l~~~i~~~  197 (201)
T 2gco_A          181 AKTKEGVREVFEMATRA  197 (201)
T ss_dssp             TTTCTTHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999999999875

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=5.6e-35  Score=189.17  Aligned_cols=160  Identities=29%  Similarity=0.495  Sum_probs=140.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      +.++|+++|++|+|||||++++.+......+.++.+.. .......++..+.+.+||+||.+.+...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   80 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence            46899999999999999999999988776666666533 34555677888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      |||++++.+++.+..|+..+..... .+.|+++|+||+|+.. +....++++++++..+++++++||++|.|+++++++|
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (166)
T 2ce2_X           81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999998877654 4799999999999876 5667888999999999999999999999999999999


Q ss_pred             Hhh
Q 030856          167 RRL  169 (170)
Q Consensus       167 ~~~  169 (170)
                      .+.
T Consensus       160 ~~~  162 (166)
T 2ce2_X          160 VRE  162 (166)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=1.1e-35  Score=200.48  Aligned_cols=161  Identities=30%  Similarity=0.525  Sum_probs=121.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .+.++|+++|.+|+|||||++++.+..+...+.++....+ ......++..+.+.+|||||++.+...+..++.++|+++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            4679999999999999999999999887777777765433 455667888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCc------------ccCHHHHHHHHHhcCC-eEEEee
Q 030856           87 VVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSRELNV-MFIETS  152 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S  152 (170)
                      +|||++++++++.+. .|+..+.... ++.|+++|+||+|+...+            .+..++++.+++..++ ++++||
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  189 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS  189 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence            999999999999986 7888887654 679999999999997653            6777888999999998 999999


Q ss_pred             cCCCCChHHHHHHHHhh
Q 030856          153 AKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       153 ~~~~~~v~~~~~~l~~~  169 (170)
                      |++|.|++++|++|.+.
T Consensus       190 A~~g~gi~el~~~l~~~  206 (214)
T 2j1l_A          190 ARLHDNVHAVFQEAAEV  206 (214)
T ss_dssp             TTTTBSHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999999999875

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=1.5e-36  Score=199.77  Aligned_cols=164  Identities=35%  Similarity=0.543  Sum_probs=126.2

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCc
Q 030856            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (170)
Q Consensus         4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   83 (170)
                      +...+.+||+++|++|+|||||++++.++.+...+.++.+..+. .....++..+.+.+||+||++.+...+..++.++|
T Consensus         3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   81 (182)
T 3bwd_D            3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGAD   81 (182)
T ss_dssp             ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCS
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCC
Confidence            44567899999999999999999999998877777777654332 23345566778899999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCcc----------cCHHHHHHHHHhcCC-eEEEe
Q 030856           84 VAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQ----------VSIEEGEAKSRELNV-MFIET  151 (170)
Q Consensus        84 ~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~  151 (170)
                      ++++|||++++++++.+. .|+..+.... ++.|+++|+||+|+.+.+.          +..++++.+++..++ ++++|
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  160 (182)
T 3bwd_D           82 VFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIEC  160 (182)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEE
Confidence            999999999999999997 6888887765 4899999999999876544          477888999999997 99999


Q ss_pred             ecCCCCChHHHHHHHHhh
Q 030856          152 SAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       152 S~~~~~~v~~~~~~l~~~  169 (170)
                      ||++|.|++++|++|.+.
T Consensus       161 Sa~~~~gi~~l~~~l~~~  178 (182)
T 3bwd_D          161 SSKSQENVKGVFDAAIRV  178 (182)
T ss_dssp             CTTTCTTHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            999999999999999875

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.2e-35  Score=196.78  Aligned_cols=161  Identities=32%  Similarity=0.536  Sum_probs=135.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ..++||+++|.+|+|||||++++.+..+...+.++.+..+.. ....++..+.+.+|||||++.+...+..++.++|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            467899999999999999999999998877777777655543 3567788889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcCC-eEEEee
Q 030856           87 VVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETS  152 (170)
Q Consensus        87 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S  152 (170)
                      +|||++++++++.+ ..|+..+.... ++.|+++|+||+|+...            +.+..+++..++...++ ++++||
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            99999999999998 67877777654 68999999999998754            45778888999999998 999999


Q ss_pred             cCCCCChHHHHHHHHhh
Q 030856          153 AKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       153 ~~~~~~v~~~~~~l~~~  169 (170)
                      |++|.|++++|++|.+.
T Consensus       181 A~~g~gi~el~~~l~~~  197 (207)
T 2fv8_A          181 AKTKEGVREVFETATRA  197 (207)
T ss_dssp             TTTCTTHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999999999875

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=100.00  E-value=3.9e-36  Score=203.65  Aligned_cols=164  Identities=27%  Similarity=0.525  Sum_probs=144.8

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCC
Q 030856            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS   82 (170)
Q Consensus         3 ~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   82 (170)
                      +......+||+++|.+|+|||||+++++.+.+...+.++.+.+........++..+.+.+|||||++.+...+..++.++
T Consensus         9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   88 (221)
T 3gj0_A            9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA   88 (221)
T ss_dssp             TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred             CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence            34556789999999999999999999887776677778888888888888888899999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHH
Q 030856           83 SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGC  162 (170)
Q Consensus        83 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~  162 (170)
                      |++++|||++++.+++.+..|+..+.... ++.|+++|+||+|+.+....  .+...+++..++++++|||++|.|++++
T Consensus        89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  165 (221)
T 3gj0_A           89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKP  165 (221)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBTTTHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999999998875 58999999999998754432  3566778888999999999999999999


Q ss_pred             HHHHHhh
Q 030856          163 SPTIRRL  169 (170)
Q Consensus       163 ~~~l~~~  169 (170)
                      |++|.+.
T Consensus       166 ~~~l~~~  172 (221)
T 3gj0_A          166 FLWLARK  172 (221)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999875

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.2e-35  Score=193.73  Aligned_cols=163  Identities=29%  Similarity=0.472  Sum_probs=141.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ....++|+++|.+|+|||||++++.++.+...+.++.+..+ ......++..+.+.+|||||++.+...+..++.++|++
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   83 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF   83 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence            34679999999999999999999999888777777766443 34455677888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCS  163 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (170)
                      ++|||++++++++.+..|+..+.....  ++.|+++|+||+|+.. +.+..++++.++..++++++++||++|.|++++|
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (199)
T 2gf0_A           84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELF  162 (199)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence            999999999999999988887766543  4789999999999865 5667788899999999999999999999999999


Q ss_pred             HHHHhhC
Q 030856          164 PTIRRLI  170 (170)
Q Consensus       164 ~~l~~~i  170 (170)
                      ++|.+.+
T Consensus       163 ~~l~~~~  169 (199)
T 2gf0_A          163 QELLTLE  169 (199)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHH
Confidence            9998753

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=100.00  E-value=5.5e-36  Score=199.28  Aligned_cols=161  Identities=23%  Similarity=0.241  Sum_probs=134.2

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCC-----------ccceeeeeeeEEEE-EeCCeEEEEEEEecCChhhhh
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-----------YQATIGIDFLSKTM-YLEDRTVRLQLWDTAGQERFR   72 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~   72 (170)
                      ...+.+||+++|++|+|||||++.+.+... ..           +.++.+.++..... ..++..+.+.+|||||++.+.
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKWIYSKVP-EGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHHHHHTSC-GGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHhhcc-ccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence            445689999999999999999977765433 22           33466555555544 566778899999999999999


Q ss_pred             hhhhhhhcCCcEEEEEEeCC------ChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC
Q 030856           73 SLIPSYIRDSSVAVVVYDVA------SRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV  146 (170)
Q Consensus        73 ~~~~~~~~~~d~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~  146 (170)
                      ..+..+++++|++|+|||++      +.++++.+..|+..+. ....+.|+++|+||+|+.+  .+..+++++++..+++
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~  165 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGK  165 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTCC
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhccc--ccCHHHHHHHHHhcCC
Confidence            99999999999999999999      5677788888887773 2336899999999999865  3778899999999999


Q ss_pred             -eEEEeecCCCCChHHHHHHHHhh
Q 030856          147 -MFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       147 -~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                       +++++||++|.|++++|++|.+.
T Consensus       166 ~~~~~~Sa~~~~gv~~l~~~l~~~  189 (198)
T 3t1o_A          166 FPVLEAVATEGKGVFETLKEVSRL  189 (198)
T ss_dssp             SCEEECBGGGTBTHHHHHHHHHHH
T ss_pred             ceEEEEecCCCcCHHHHHHHHHHH
Confidence             99999999999999999999875

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=100.00  E-value=7.1e-35  Score=193.55  Aligned_cols=162  Identities=30%  Similarity=0.464  Sum_probs=133.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCC--CCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh-hhhhhhhhhcCCc
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDK--FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRDSS   83 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d   83 (170)
                      ...+||+++|.+|||||||++++.+..  +... .++.+.++....+.+++..+.+.+|||+|... +..+...++..+|
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            456999999999999999999999643  2233 33455566667777888888999999999776 4556777888999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHH
Q 030856           84 VAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGC  162 (170)
Q Consensus        84 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~  162 (170)
                      ++++|||++++++|+.+..|+..+.... ..+.|+++|+||+|+...+.+..++++.++..+++++++|||++|.|++++
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            9999999999999999999988877653 357999999999999877778888888899999999999999999999999


Q ss_pred             HHHHHhh
Q 030856          163 SPTIRRL  169 (170)
Q Consensus       163 ~~~l~~~  169 (170)
                      |++|++.
T Consensus       163 f~~l~~~  169 (192)
T 2cjw_A          163 FEGIVRQ  169 (192)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999864

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=100.00  E-value=6.1e-35  Score=194.58  Aligned_cols=162  Identities=17%  Similarity=0.247  Sum_probs=126.3

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCC-CccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCC
Q 030856            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS   82 (170)
Q Consensus         4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   82 (170)
                      .+.....+|+++|.+|+|||||++++.+..+.. .+.++.+.....  +  ++..+.+.+|||||++.+...+..++.++
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   87 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET--F--EKGRVAFTVFDMGGAKKFRGLWETYYDNI   87 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE--E--EETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE--E--EeCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence            455678999999999999999999999998876 677777744332  2  23457899999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHhHHHHHHHHHHhcC--------CCCeEEEEEeCCCCCCCcccC---HHHH-HHHHHhcCCeEEE
Q 030856           83 SVAVVVYDVASRQSFLNTSKWIDEVRTERG--------SDVIIVLVGNKTDLVEKRQVS---IEEG-EAKSRELNVMFIE  150 (170)
Q Consensus        83 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--------~~~~~vvv~nK~D~~~~~~~~---~~~~-~~~~~~~~~~~~~  150 (170)
                      |++|+|||++++++|+.+..|+..+.....        .+.|+++|+||+|+.......   .... ..+++..++++++
T Consensus        88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (199)
T 4bas_A           88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFA  167 (199)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEE
T ss_pred             CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEE
Confidence            999999999999999999999888765421        379999999999997653221   1111 1112557789999


Q ss_pred             eecCCCCChHHHHHHHHhh
Q 030856          151 TSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       151 ~S~~~~~~v~~~~~~l~~~  169 (170)
                      |||++|.|++++|++|.+.
T Consensus       168 ~Sa~~g~gv~~l~~~l~~~  186 (199)
T 4bas_A          168 SNGLKGTGVHEGFSWLQET  186 (199)
T ss_dssp             CBTTTTBTHHHHHHHHHHH
T ss_pred             eeCCCccCHHHHHHHHHHH
Confidence            9999999999999999875

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=100.00  E-value=5.7e-34  Score=190.04  Aligned_cols=157  Identities=21%  Similarity=0.245  Sum_probs=123.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .+.++|+++|++|+|||||++++.++.+. .+.++.+..  ...+..++  ..+.+|||||++.++..+..+++++|+++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   97 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   97 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence            45789999999999999999999987763 345555543  23444555  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHh-----------------cCCeE
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-----------------LNVMF  148 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~  148 (170)
                      +|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+  .+..+++++++..                 .++++
T Consensus        98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            9999999999999999988886642 36799999999999865  5566777776653                 34589


Q ss_pred             EEeecCCCCChHHHHHHHHhhC
Q 030856          149 IETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       149 ~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                      ++|||++|.|++++|++|.+.+
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHhc
Confidence            9999999999999999998764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=100.00  E-value=4.1e-33  Score=185.99  Aligned_cols=162  Identities=36%  Similarity=0.679  Sum_probs=144.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      ..++|+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++.+......+++.++++++
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~   83 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   83 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence            46899999999999999999999998877777888777777788888988999999999999999889999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR  167 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (170)
                      |||++++.+++.+..|+..+......+.|+++++||+|+.+.+....++++.++...++.++++|++++.|+++++++|.
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~  163 (199)
T 2f9l_A           84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL  163 (199)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999998998888766556799999999999987777888889999999999999999999999999999998


Q ss_pred             hh
Q 030856          168 RL  169 (170)
Q Consensus       168 ~~  169 (170)
                      +.
T Consensus       164 ~~  165 (199)
T 2f9l_A          164 TE  165 (199)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=100.00  E-value=1.4e-33  Score=187.08  Aligned_cols=157  Identities=23%  Similarity=0.243  Sum_probs=128.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .+.++|+++|++|+|||||++++.++.+. .+.++.+..  ...+..++  ..+.+|||||++.++..+..+++++|+++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   95 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV   95 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            45689999999999999999999988764 345555543  34445555  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHh------------cCCeEEEeec
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE------------LNVMFIETSA  153 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~S~  153 (170)
                      +|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+  ....+++.+.+..            .++++++|||
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            9999999999999999988876542 36799999999999865  4556666666543            3568999999


Q ss_pred             CCCCChHHHHHHHHhhC
Q 030856          154 KAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       154 ~~~~~v~~~~~~l~~~i  170 (170)
                      ++|.|++++|++|.+.|
T Consensus       174 ~~g~gi~~l~~~l~~~l  190 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQYI  190 (190)
T ss_dssp             TTTBSHHHHHHHHHTTC
T ss_pred             CcCCCHHHHHHHHHhhC
Confidence            99999999999999865

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=100.00  E-value=1.2e-34  Score=191.82  Aligned_cols=159  Identities=23%  Similarity=0.318  Sum_probs=128.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ..+.++|+++|.+|+|||||++++.++.+...+.++.+.++..  +..  ..+.+.+||+||++.+...+..++.++|++
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITK--GNVTIKLWDIGGQPRFRSMWERYCRGVSAI   94 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEE--TTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEe--CCEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence            3457999999999999999999999988877777777766543  222  347899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHH-----HhcCCeEEEeecCCCCCh
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNI  159 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v  159 (170)
                      ++|||++++++++.+..|+..+.... ..+.|+++|+||+|+....  ..++.....     ...++++++|||++|.|+
T Consensus        95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv  172 (188)
T 1zd9_A           95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNI  172 (188)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCH
Confidence            99999999999999999988876543 2689999999999986532  222222221     123568999999999999


Q ss_pred             HHHHHHHHhhC
Q 030856          160 KGCSPTIRRLI  170 (170)
Q Consensus       160 ~~~~~~l~~~i  170 (170)
                      +++|++|.+.+
T Consensus       173 ~~l~~~l~~~~  183 (188)
T 1zd9_A          173 DITLQWLIQHS  183 (188)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.2e-33  Score=185.94  Aligned_cols=159  Identities=19%  Similarity=0.277  Sum_probs=128.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCC-CCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDK-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   84 (170)
                      ..+.++|+++|.+|+|||||++++.+.. ....+.++.+.  ....+..++  ..+.+|||||++.+...+..++.++|+
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~   93 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA   93 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence            4568999999999999999999999887 45556666653  333444444  689999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCCcccCHHHHHHHHH-----hcCCeEEEeecCCC
Q 030856           85 AVVVYDVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAG  156 (170)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~  156 (170)
                      +++|||++++++++.+..|+..+.....   .+.|+++|+||+|+.+.  ...++..+...     ..++++++|||++|
T Consensus        94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  171 (190)
T 2h57_A           94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKG  171 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence            9999999999999999999888877543   57999999999999653  34455555553     23679999999999


Q ss_pred             CChHHHHHHHHhhC
Q 030856          157 FNIKGCSPTIRRLI  170 (170)
Q Consensus       157 ~~v~~~~~~l~~~i  170 (170)
                      .|++++|++|.+.+
T Consensus       172 ~gi~~l~~~l~~~i  185 (190)
T 2h57_A          172 EGLQEGVDWLQDQI  185 (190)
T ss_dssp             BTHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHH
Confidence            99999999998764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=100.00  E-value=5.7e-33  Score=184.24  Aligned_cols=163  Identities=35%  Similarity=0.661  Sum_probs=148.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ...++|+++|++|||||||++++.+...+..+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+++++
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i  106 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL  106 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence            45689999999999999999999999888888889888888888888998889999999999999899999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      +|||.++..+++.+..|+..+......+.|+++++||+|+.+.+....+.++.++...++.++++|++++.++++++++|
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l  186 (191)
T 1oix_A          107 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI  186 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999889888776655678999999999998777778889999999999999999999999999999999


Q ss_pred             Hhh
Q 030856          167 RRL  169 (170)
Q Consensus       167 ~~~  169 (170)
                      .+.
T Consensus       187 ~~~  189 (191)
T 1oix_A          187 LTE  189 (191)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=100.00  E-value=1.5e-34  Score=187.13  Aligned_cols=154  Identities=21%  Similarity=0.341  Sum_probs=121.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +||+++|++|+|||||++++.++.+.. +.|+.+..  ...+..  ..+.+.+||+||++.+...+..++.++|++++||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999877653 45555522  223333  3468999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHH-----HHhcCCeEEEeecCCCCChHHHH
Q 030856           90 DVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAK-----SRELNVMFIETSAKAGFNIKGCS  163 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~v~~~~  163 (170)
                      |++++++++.+..|+..+.... .++.|+++|+||+|+.+...  .++....     ++..++++++|||++|.|++++|
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC--HHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            9999999999999988876542 36899999999999965422  2222221     22245689999999999999999


Q ss_pred             HHHHhhC
Q 030856          164 PTIRRLI  170 (170)
Q Consensus       164 ~~l~~~i  170 (170)
                      ++|.+.+
T Consensus       154 ~~l~~~i  160 (164)
T 1r8s_A          154 DWLSNQL  160 (164)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHH
Confidence            9998764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=100.00  E-value=2e-34  Score=191.41  Aligned_cols=158  Identities=20%  Similarity=0.340  Sum_probs=119.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ..+.++|+++|++|+|||||++++..+.+. .+.|+.+..  ...+...  .+.+.+||+||.+.+...+..++.++|++
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i  100 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGL  100 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEE--EEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCcee--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            457899999999999999999999987764 344555422  2333333  37899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHH-----HHhcCCeEEEeecCCCCCh
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAK-----SRELNVMFIETSAKAGFNI  159 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~v  159 (170)
                      ++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+...  .++....     +...++++++|||++|.|+
T Consensus       101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi  178 (192)
T 2b6h_A          101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP--VSELTDKLGLQHLRSRTWYVQATCATQGTGL  178 (192)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC--HHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence            99999999999999999988876543 25799999999999865422  2222221     2234568999999999999


Q ss_pred             HHHHHHHHhhC
Q 030856          160 KGCSPTIRRLI  170 (170)
Q Consensus       160 ~~~~~~l~~~i  170 (170)
                      +++|++|.+.+
T Consensus       179 ~~l~~~l~~~i  189 (192)
T 2b6h_A          179 YDGLDWLSHEL  189 (192)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=100.00  E-value=6.2e-34  Score=185.38  Aligned_cols=156  Identities=21%  Similarity=0.321  Sum_probs=124.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .+.++|+++|++|+|||||++++.++.+. .+.++.+...  ..+..+  ...+.+||+||.+.+...+..++.++|+++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            45799999999999999999999988764 3455555333  333344  468999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHH-----HHHHhcCCeEEEeecCCCCChH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGE-----AKSRELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~S~~~~~~v~  160 (170)
                      +|||++++++++.+..|+..+..... .+.|+++|+||+|+.+....  ++..     ..+...+++++++||++|.|++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS--SEMANSLGLPALKDRKWQIFKTSATKGTGLD  157 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCH--HHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence            99999999999999888887765432 68999999999999764322  2222     2233456789999999999999


Q ss_pred             HHHHHHHhh
Q 030856          161 GCSPTIRRL  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      ++|++|.+.
T Consensus       158 ~l~~~l~~~  166 (171)
T 1upt_A          158 EAMEWLVET  166 (171)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999875

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=100.00  E-value=4.4e-33  Score=183.87  Aligned_cols=156  Identities=22%  Similarity=0.314  Sum_probs=126.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .+.++|+++|++|+|||||++++.++. ...+.++.+...  ..+..+  ...+.+|||||++.+...+..+++++|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI--KTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE--EEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            578999999999999999999999887 666677766443  333344  368999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHH-----HhcCCeEEEeecCCCCChH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~  160 (170)
                      +|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+...  .++..+..     ...+++++++||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            9999999999999999988876643 36799999999999966433  33333322     2346799999999999999


Q ss_pred             HHHHHHHhh
Q 030856          161 GCSPTIRRL  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      +++++|.+.
T Consensus       169 ~l~~~l~~~  177 (186)
T 1ksh_A          169 PGIDWLLDD  177 (186)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999875

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=100.00  E-value=1.3e-33  Score=185.83  Aligned_cols=159  Identities=19%  Similarity=0.296  Sum_probs=125.3

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   84 (170)
                      ...+.++|+++|.+|+|||||++++.++.+ ..+.++.+...  ..+..++  ..+.+||+||.+.+...+..++.++|+
T Consensus        17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~   91 (181)
T 2h17_A           17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF   91 (181)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            345789999999999999999999998877 44455555333  3333444  789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHH-----HhcCCeEEEeecCCCCC
Q 030856           85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFN  158 (170)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~  158 (170)
                      +++|||++++++++.+..|+..+.... ..+.|+++|+||+|+...  ...++..+..     ...++++++|||++|.|
T Consensus        92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g  169 (181)
T 2h17_A           92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEG  169 (181)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence            999999999999999999988876643 367999999999998653  2334443333     23456899999999999


Q ss_pred             hHHHHHHHHhhC
Q 030856          159 IKGCSPTIRRLI  170 (170)
Q Consensus       159 v~~~~~~l~~~i  170 (170)
                      ++++|++|.+.+
T Consensus       170 i~~l~~~l~~~l  181 (181)
T 2h17_A          170 LCQGLEWMMSRL  181 (181)
T ss_dssp             HHHHHHHHHTC-
T ss_pred             HHHHHHHHHhhC
Confidence            999999998764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=100.00  E-value=3.9e-34  Score=188.79  Aligned_cols=160  Identities=22%  Similarity=0.371  Sum_probs=123.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC--CCCCCccceeeeeeeEEEEEe---CCeEEEEEEEecCChhhhhhhhhhhhcCCc
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d   83 (170)
                      ++||+++|++|||||||++++.+.  .+...+.++.+.++.......   ++..+.+.+||++|++.+..+...++.+++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            589999999999999999999985  344556777777776655443   235678999999999999999999999999


Q ss_pred             EEEEEEeCCCh-hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCe----EEEeecCC
Q 030856           84 VAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS---IEEGEAKSRELNVM----FIETSAKA  155 (170)
Q Consensus        84 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~S~~~  155 (170)
                      ++++|||++++ .+++.+..|+..+.... ++.|+++|+||+|+.+.+.+.   .+..+.+++..+++    ++++||++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE  160 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence            99999999987 57999999999887654 579999999999987654432   34456677777886    99999999


Q ss_pred             CC-ChHHHHHHHHhh
Q 030856          156 GF-NIKGCSPTIRRL  169 (170)
Q Consensus       156 ~~-~v~~~~~~l~~~  169 (170)
                      +. +++++++.|.+.
T Consensus       161 ~~~~~~~l~~~i~~~  175 (184)
T 2zej_A          161 ESDALAKLRKTIINE  175 (184)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHH
Confidence            97 999999998764

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=100.00  E-value=9.9e-34  Score=188.59  Aligned_cols=162  Identities=17%  Similarity=0.211  Sum_probs=124.6

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEE--EEEe-CCeEEEEEEEecCChhhhhhhh---hh
Q 030856            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSK--TMYL-EDRTVRLQLWDTAGQERFRSLI---PS   77 (170)
Q Consensus         4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~i~D~~g~~~~~~~~---~~   77 (170)
                      .+..+.+||+++|.+|||||||++++.+.....   ++.+.++...  ...+ ++..+.+.+||+||++.+....   ..
T Consensus        15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   91 (196)
T 3llu_A           15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEM   91 (196)
T ss_dssp             -----CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHH
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccc
Confidence            455678999999999999999999888754322   2333232222  2223 2556789999999999987776   89


Q ss_pred             hhcCCcEEEEEEeCCCh--hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC-------CcccCHHHHHHHHH----hc
Q 030856           78 YIRDSSVAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE-------KRQVSIEEGEAKSR----EL  144 (170)
Q Consensus        78 ~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~-------~~~~~~~~~~~~~~----~~  144 (170)
                      +++++|++|+|||++++  +++..+..|+..+... .++.|+++|+||+|+..       .+.+..+.++.+++    ..
T Consensus        92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  170 (196)
T 3llu_A           92 IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL  170 (196)
T ss_dssp             HHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred             ccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence            99999999999999997  6777778887776543 36899999999999754       34566667788888    67


Q ss_pred             CCeEEEeecCCCCChHHHHHHHHhhC
Q 030856          145 NVMFIETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       145 ~~~~~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                      ++++++|||++ .|++++|+.|++.|
T Consensus       171 ~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          171 HLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             CEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             CcceEEEEech-hhHHHHHHHHHHHh
Confidence            88999999999 99999999999864

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.8e-33  Score=183.92  Aligned_cols=156  Identities=20%  Similarity=0.292  Sum_probs=123.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .+.++|+++|.+|+|||||++++.++.+. .+.++.+..  ...+..++  ..+.+||+||.+.+...+..++.++|+++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            56799999999999999999999987765 555555533  23333444  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHH-----HhcCCeEEEeecCCCCChH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~  160 (170)
                      +|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.  ...++..+..     +..++++++|||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            9999999999999999998887653 267999999999998653  2334444333     2346799999999999999


Q ss_pred             HHHHHHHhh
Q 030856          161 GCSPTIRRL  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      +++++|.+.
T Consensus       167 ~l~~~l~~~  175 (187)
T 1zj6_A          167 QGLEWMMSR  175 (187)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999875

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=100.00  E-value=3.1e-33  Score=184.05  Aligned_cols=157  Identities=22%  Similarity=0.350  Sum_probs=124.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .+.++|+++|++|+|||||++++.+... ..+.++.+..  ...+..+  .+.+.+||+||++.+...+..++.++|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            5679999999999999999999998754 3345555533  2333344  368999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHH-----HhcCCeEEEeecCCCCChH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~  160 (170)
                      +|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+...  .++..+..     ...++++++|||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            9999999999999998888775542 36799999999999876443  23332221     2345689999999999999


Q ss_pred             HHHHHHHhhC
Q 030856          161 GCSPTIRRLI  170 (170)
Q Consensus       161 ~~~~~l~~~i  170 (170)
                      ++|++|.+.+
T Consensus       167 ~l~~~l~~~~  176 (181)
T 1fzq_A          167 DGMNWVCKNV  176 (181)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHHH
Confidence            9999998754

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=100.00  E-value=2.4e-32  Score=195.08  Aligned_cols=160  Identities=29%  Similarity=0.469  Sum_probs=141.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      ..++|+++|.+|+|||||++++.++.+...+.++.+. .....+..++..+.+.+||+||.+.+......++.++|++++
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEE-EEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccc-eeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            4689999999999999999999998887777777764 345556778888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcCC-eEEEeec
Q 030856           88 VYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSA  153 (170)
Q Consensus        88 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~  153 (170)
                      |||++++.+++.+. .|+..+.... ++.|+++|+||+|+...            +.+..+++..+++..++ ++++|||
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  311 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  311 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence            99999999999986 7888777665 48999999999998653            56788999999999998 9999999


Q ss_pred             CCCCChHHHHHHHHhh
Q 030856          154 KAGFNIKGCSPTIRRL  169 (170)
Q Consensus       154 ~~~~~v~~~~~~l~~~  169 (170)
                      ++|.|++++|++|.+.
T Consensus       312 ~~~~gi~~l~~~l~~~  327 (332)
T 2wkq_A          312 LTQRGLKTVFDEAIRA  327 (332)
T ss_dssp             TTCTTHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHH
Confidence            9999999999999875

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-35  Score=199.21  Aligned_cols=162  Identities=30%  Similarity=0.492  Sum_probs=137.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .+.++|+++|.+|+|||||++++.+..+...+.++.+.. .......++..+.+.+|||||++.+...+..++.++|+++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            567999999999999999999999888776666666533 3444556677788999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCc------------ccCHHHHHHHHHhcCC-eEEEee
Q 030856           87 VVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSRELNV-MFIETS  152 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S  152 (170)
                      +|||++++++++.+. .|+..+.... ++.|+++|+||+|+.+.+            .+..+++..+++..++ ++++||
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS  185 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
Confidence            999999999999986 7877776654 479999999999987543            5566778888888898 999999


Q ss_pred             cCCCCChHHHHHHHHhhC
Q 030856          153 AKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       153 ~~~~~~v~~~~~~l~~~i  170 (170)
                      |++|.|++++|++|.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
Confidence            999999999999998753

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=100.00  E-value=8.5e-34  Score=187.79  Aligned_cols=156  Identities=21%  Similarity=0.299  Sum_probs=123.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .++++|+++|++|+|||||++++..+.+. .+.++.+..  ...+..+  ...+.+|||||++.+...+..+++++|+++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVN--LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCC--EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceE--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            56899999999999999999999877654 344555432  2333343  368999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHH-----HHHhcCCeEEEeecCCCCChH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEA-----KSRELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~S~~~~~~v~  160 (170)
                      +|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+...  .++...     .+...++++++|||+++.|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            9999999999999988888776543 26899999999999965432  222222     223345689999999999999


Q ss_pred             HHHHHHHhh
Q 030856          161 GCSPTIRRL  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      +++++|.+.
T Consensus       173 ~l~~~l~~~  181 (189)
T 2x77_A          173 EGMDWLVER  181 (189)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999875

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=3.7e-33  Score=183.66  Aligned_cols=156  Identities=22%  Similarity=0.342  Sum_probs=121.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .+.++|+++|++|+|||||++++.++.. ..+.++.+..  ......++  ..+.+||+||.+.+...+..++.++|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            6789999999999999999999997766 4445555533  23333443  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHH-----hcCCeEEEeecCCCCChH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~v~  160 (170)
                      +|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.  ...++..+...     ..++++++|||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999999988887654 368999999999998653  23344433332     234589999999999999


Q ss_pred             HHHHHHHhh
Q 030856          161 GCSPTIRRL  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      +++++|.+.
T Consensus       169 ~l~~~l~~~  177 (183)
T 1moz_A          169 EGLDWLIDV  177 (183)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999875

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=100.00  E-value=9.2e-32  Score=174.52  Aligned_cols=154  Identities=16%  Similarity=0.224  Sum_probs=116.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh------hhhhhhhc-
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSYIR-   80 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~-   80 (170)
                      +.++|+++|++|+|||||++++.+........++.+.+.....+..++  ..+.+|||||+..+.      .+...++. 
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~   79 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   79 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence            468999999999999999999998766555455555555555555554  579999999988764      33455554 


Q ss_pred             -CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCCh
Q 030856           81 -DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (170)
Q Consensus        81 -~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v  159 (170)
                       ++|++++++|.++.+.   ...|+..+..   .+.|+++|+||+|+...+.+.. +++.+++..+++++++||++|.|+
T Consensus        80 ~~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v  152 (165)
T 2wji_A           80 EKPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGI  152 (165)
T ss_dssp             HCCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSH
T ss_pred             CCCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCH
Confidence             8999999999987543   3446666554   3689999999999865444432 467788888999999999999999


Q ss_pred             HHHHHHHHhhC
Q 030856          160 KGCSPTIRRLI  170 (170)
Q Consensus       160 ~~~~~~l~~~i  170 (170)
                      +++|++|.+.+
T Consensus       153 ~~l~~~l~~~~  163 (165)
T 2wji_A          153 EELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998754

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.98  E-value=4.7e-32  Score=182.66  Aligned_cols=162  Identities=20%  Similarity=0.303  Sum_probs=115.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCe-EEEEEEEecCChhhhhh-hhhhhhcCCc
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQERFRS-LIPSYIRDSS   83 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~d   83 (170)
                      ..+.++|+++|++|+|||||++++.+..+...+.++ ..+...  +.+++. .+.+.+|||||++.+.. ++..++.++|
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   80 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR   80 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence            346799999999999999999999998877665433 333333  444443 57899999999999988 7888999999


Q ss_pred             EEEEEEeCCChh-hHHhHHHHHHHHHHh---cCCCCeEEEEEeCCCCCCCcccCH--HHHHH------------------
Q 030856           84 VAVVVYDVASRQ-SFLNTSKWIDEVRTE---RGSDVIIVLVGNKTDLVEKRQVSI--EEGEA------------------  139 (170)
Q Consensus        84 ~~i~v~d~~~~~-~~~~~~~~~~~~~~~---~~~~~~~vvv~nK~D~~~~~~~~~--~~~~~------------------  139 (170)
                      ++++|||+++.+ ++.....++..+...   ...+.|+++|+||+|+...+....  +....                  
T Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~  160 (214)
T 2fh5_B           81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS  160 (214)
T ss_dssp             EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC--------
T ss_pred             EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccC
Confidence            999999999853 455555544443322   235799999999999976543210  11111                  


Q ss_pred             --------------HHH-hc--CCeEEEeecCCC------CChHHHHHHHHhhC
Q 030856          140 --------------KSR-EL--NVMFIETSAKAG------FNIKGCSPTIRRLI  170 (170)
Q Consensus       140 --------------~~~-~~--~~~~~~~S~~~~------~~v~~~~~~l~~~i  170 (170)
                                    ++. ..  +++|++|||++|      .|++++|++|.+.+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~  214 (214)
T 2fh5_B          161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA  214 (214)
T ss_dssp             ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred             CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence                          111 11  668999999999      99999999999864

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.98  E-value=4.2e-33  Score=192.40  Aligned_cols=164  Identities=18%  Similarity=0.251  Sum_probs=123.9

Q ss_pred             CCCCCceeEEEEcCC---------CCCHHHHHHHHhc---CCCCCCcccee-eeeeeEEEE--------------EeCCe
Q 030856            4 VSALAKYKLVFLGDQ---------SVGKTSIITRFMY---DKFDNTYQATI-GIDFLSKTM--------------YLEDR   56 (170)
Q Consensus         4 ~~~~~~~~i~i~G~~---------~~GKStll~~l~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~~   56 (170)
                      ....+.+||+++|.+         |||||||++++.+   ..+...+.++. +.++....+              ..++.
T Consensus        14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   93 (255)
T 3c5h_A           14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV   93 (255)
T ss_dssp             SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred             CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence            445677999999999         9999999999998   44555555554 333322211              13456


Q ss_pred             EEEEEEEe-----------------------cCChhhhhhhhhhhhc---------------------CCcEEEEEEeCC
Q 030856           57 TVRLQLWD-----------------------TAGQERFRSLIPSYIR---------------------DSSVAVVVYDVA   92 (170)
Q Consensus        57 ~~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~   92 (170)
                      .+.+.+||                       ++|++.+..++..++.                     ++|++|+|||++
T Consensus        94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t  173 (255)
T 3c5h_A           94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS  173 (255)
T ss_dssp             --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred             EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence            78899999                       6666666666667766                     799999999999


Q ss_pred             Ch--hhHHhHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHh-cCCeEEEeecCCCCChHHHHHHHHh
Q 030856           93 SR--QSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus        93 ~~--~~~~~~~~~~~~~~~~-~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ++  ++++.+..|+..+... ...+.|+++|+||+|+...+.+  ++++.++.. .++++++|||++|.|++++|++|.+
T Consensus       174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~  251 (255)
T 3c5h_A          174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ  251 (255)
T ss_dssp             C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            98  9999999999988765 3367999999999998665544  577778876 4889999999999999999999987


Q ss_pred             h
Q 030856          169 L  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       252 ~  252 (255)
T 3c5h_A          252 L  252 (255)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.97  E-value=7e-31  Score=185.64  Aligned_cols=158  Identities=22%  Similarity=0.308  Sum_probs=126.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC---CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh-----hhhhhhhh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-----RSLIPSYI   79 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~   79 (170)
                      ..+||+++|.+|+|||||++++.++...   ..+.+|.+.....  ....+ .+.+.+||+||++.+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            4689999999999999999999987433   2344555554443  33333 578999999999988     67888899


Q ss_pred             cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhc--CCCCeEEEEEeCCCCCC--Ccc----cCHHHHHHHHHhcC---CeE
Q 030856           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTER--GSDVIIVLVGNKTDLVE--KRQ----VSIEEGEAKSRELN---VMF  148 (170)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~vvv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~  148 (170)
                      +++|++|+|||++++++++.+..|...+....  .++.|+++|+||+|+.+  .+.    +..++++++++.+|   +++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~  158 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG  158 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence            99999999999999999999877755443321  36899999999999876  444    56688899999987   799


Q ss_pred             EEeecCCCCChHHHHHHHHhh
Q 030856          149 IETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       149 ~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      +++||++ .++.++|..+++.
T Consensus       159 ~~tSa~~-~~i~e~~~~iv~~  178 (307)
T 3r7w_A          159 FPTSIWD-ESLYKAWSQIVCS  178 (307)
T ss_dssp             EECCTTS-SHHHHHHHHHHHT
T ss_pred             EEeeecC-ChHHHHHHHHHHH
Confidence            9999999 8999999888764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.97  E-value=1.8e-30  Score=176.60  Aligned_cols=160  Identities=18%  Similarity=0.161  Sum_probs=113.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh------hh---hhhhhh
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE------RF---RSLIPS   77 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~------~~---~~~~~~   77 (170)
                      .+.++|+++|.+|+|||||++++.+..+.....+..+.+.........+  ..+.+|||||..      ..   ......
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            5679999999999999999999998766422222223233333333333  679999999983      21   122344


Q ss_pred             hhcCCcEEEEEEeCCChhhHHh--HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHH---HHHHHHHhcC--CeEEE
Q 030856           78 YIRDSSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE---EGEAKSRELN--VMFIE  150 (170)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~~  150 (170)
                      ++..+|++++|||++++.+++.  ...|+..+... .++.|+++|+||+|+.+.+.+..+   ..+.++...+  +++++
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS  183 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence            5778999999999999877652  23455555443 247999999999999877666544   5666777777  89999


Q ss_pred             eecCCCCChHHHHHHHHhh
Q 030856          151 TSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       151 ~S~~~~~~v~~~~~~l~~~  169 (170)
                      |||++|.|++++|++|.+.
T Consensus       184 ~SA~~g~gi~~l~~~l~~~  202 (228)
T 2qu8_A          184 FSTLTGVGVEQAKITACEL  202 (228)
T ss_dssp             CCTTTCTTHHHHHHHHHHH
T ss_pred             EecccCCCHHHHHHHHHHH
Confidence            9999999999999999865

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.97  E-value=1.1e-31  Score=191.34  Aligned_cols=156  Identities=21%  Similarity=0.329  Sum_probs=117.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .+.++|+++|.+|+|||||++++.+..+... .++.+..+..  +..  ..+.+.+|||||++.+..++..++..+|++|
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~--~~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi  237 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI  237 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEEE--EEE--TTEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEEE--Eec--CcEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            3568999999999999999999998876433 3555444332  223  3468999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHH-----HhcCCeEEEeecCCCCChH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~  160 (170)
                      +|||++++++++.+..|+..+.... .+++|+++|+||+|+.+...  .++.....     ...+++++++||++|.|++
T Consensus       238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~  315 (329)
T 3o47_A          238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLY  315 (329)
T ss_dssp             EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence            9999999999999988877765543 36899999999999876433  22222221     2235689999999999999


Q ss_pred             HHHHHHHhh
Q 030856          161 GCSPTIRRL  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      ++|++|.+.
T Consensus       316 el~~~l~~~  324 (329)
T 3o47_A          316 EGLDWLSNQ  324 (329)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999875

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.97  E-value=7e-31  Score=174.45  Aligned_cols=160  Identities=16%  Similarity=0.189  Sum_probs=111.1

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCC----------hhhhh
Q 030856            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFR   72 (170)
Q Consensus         3 ~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~   72 (170)
                      ..+....++|+++|++|+|||||++++.+..+...+.++.+.+........++   .+.+|||||          .+.+.
T Consensus        17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~   93 (195)
T 1svi_A           17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWG   93 (195)
T ss_dssp             GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHH
T ss_pred             hCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHH
Confidence            34456789999999999999999999998875444444444333333333333   589999999          77788


Q ss_pred             hhhhhhhcCC---cEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCH--HHHHH-HHHhcCC
Q 030856           73 SLIPSYIRDS---SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI--EEGEA-KSRELNV  146 (170)
Q Consensus        73 ~~~~~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~--~~~~~-~~~~~~~  146 (170)
                      .....++..+   |++++|+|++++.++.... ++..+..   .+.|+++|+||+|+...+++..  +++++ ++...++
T Consensus        94 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  169 (195)
T 1svi_A           94 RMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED  169 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred             HHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCC
Confidence            8888888777   9999999999876665532 1222222   4789999999999976555432  23333 3334567


Q ss_pred             eEEEeecCCCCChHHHHHHHHhh
Q 030856          147 MFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       147 ~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      +++++||++|.|+++++++|.+.
T Consensus       170 ~~~~~Sa~~~~gv~~l~~~l~~~  192 (195)
T 1svi_A          170 ELILFSSETKKGKDEAWGAIKKM  192 (195)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ceEEEEccCCCCHHHHHHHHHHH
Confidence            99999999999999999999875

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.97  E-value=2.3e-31  Score=187.04  Aligned_cols=153  Identities=17%  Similarity=0.172  Sum_probs=119.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCC---CccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh---hhhhhhcCCcE
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---LIPSYIRDSSV   84 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~d~   84 (170)
                      ||+++|..|+|||||++++.++..+.   .+.+|.+.++..    ++ ..+++++|||+|+++|+.   ....|++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999988765433   245677666543    22 347899999999999974   46889999999


Q ss_pred             EEEEEeCCCh--hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC-------cccCHHHHHHHHHh----cCCeEEEe
Q 030856           85 AVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK-------RQVSIEEGEAKSRE----LNVMFIET  151 (170)
Q Consensus        85 ~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~  151 (170)
                      +|+|||++++  +.++.+..|+..+... .+++|+++++||+|+..+       |++..++++++++.    ++++|++|
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            9999999987  3333344444444443 468999999999999764       45777788888886    68899999


Q ss_pred             ecCCCCChHHHHHHHHhhC
Q 030856          152 SAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       152 S~~~~~~v~~~~~~l~~~i  170 (170)
                      ||++ .++.+.|..+++.+
T Consensus       155 SAkd-~nV~eAFs~iv~~l  172 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKL  172 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTS
T ss_pred             ccCC-CcHHHHHHHHHHHH
Confidence            9998 59999999998754

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.97  E-value=2.1e-30  Score=169.72  Aligned_cols=155  Identities=16%  Similarity=0.198  Sum_probs=116.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ..+.++|+++|++|+|||||++++.+..+...+.++.+.+.....+..++.  .+.+|||||++.+...+..++..+|++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~   82 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV   82 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence            356799999999999999999999998887666666665665566666664  578999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHh-------cC--CeEEEeecCCC
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-------LN--VMFIETSAKAG  156 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~-------~~--~~~~~~S~~~~  156 (170)
                      ++|||++++...+..    ..+......+.|+++|+||+|+...   ..++.......       .+  ++++++||++|
T Consensus        83 i~v~d~~~~~~~~~~----~~l~~~~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  155 (178)
T 2lkc_A           83 ILVVAADDGVMPQTV----EAINHAKAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTK  155 (178)
T ss_dssp             EEEEETTCCCCHHHH----HHHHHHGGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred             EEEEECCCCCcHHHH----HHHHHHHhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence            999999884222111    1122222357899999999998653   22333322222       22  58999999999


Q ss_pred             CChHHHHHHHHhh
Q 030856          157 FNIKGCSPTIRRL  169 (170)
Q Consensus       157 ~~v~~~~~~l~~~  169 (170)
                      .|++++|++|.+.
T Consensus       156 ~gv~~l~~~l~~~  168 (178)
T 2lkc_A          156 EGLDHLLEMILLV  168 (178)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999864

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.97  E-value=1.9e-30  Score=171.45  Aligned_cols=155  Identities=15%  Similarity=0.206  Sum_probs=120.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh------hhhhhhh
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSYI   79 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~   79 (170)
                      .++.++|+++|++|+|||||++++.+........++.+.+.....+..++  ..+.+|||||.+.+.      .....++
T Consensus         4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (188)
T 2wjg_A            4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI   81 (188)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHH
Confidence            45789999999999999999999998765444455555555555555554  678999999988764      3455555


Q ss_pred             c--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCC
Q 030856           80 R--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF  157 (170)
Q Consensus        80 ~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  157 (170)
                      .  .+|++++++|.++   ++....|+..+..   .+.|+++|+||+|+...+.+. +..+.+++..+++++++||+++.
T Consensus        82 ~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~  154 (188)
T 2wjg_A           82 INEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKM  154 (188)
T ss_dssp             HHHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTB
T ss_pred             hccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCC
Confidence            4  5999999999875   4555667666654   478999999999986554444 45677888889999999999999


Q ss_pred             ChHHHHHHHHhh
Q 030856          158 NIKGCSPTIRRL  169 (170)
Q Consensus       158 ~v~~~~~~l~~~  169 (170)
                      |++++|++|.+.
T Consensus       155 ~v~~l~~~i~~~  166 (188)
T 2wjg_A          155 GIEELKKAISIA  166 (188)
T ss_dssp             SHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999999999864

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.97  E-value=2.3e-30  Score=169.04  Aligned_cols=153  Identities=18%  Similarity=0.188  Sum_probs=114.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh--------hhhh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY   78 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   78 (170)
                      +..+|+++|++|+|||||++++.+.... ....++.+.++....+..++.  .+.+|||||...+...        ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            4589999999999999999999987542 222344444555566666663  4789999997643211        1235


Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCC
Q 030856           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (170)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  158 (170)
                      +.++|++++|||++++.+++ ...|+..+......++|+++|+||+|+.+...       .++...+++++++||++|.|
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred             HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence            78999999999999988766 45677777766556799999999999854211       12333567999999999999


Q ss_pred             hHHHHHHHHhhC
Q 030856          159 IKGCSPTIRRLI  170 (170)
Q Consensus       159 v~~~~~~l~~~i  170 (170)
                      ++++|++|.+.+
T Consensus       153 v~~l~~~l~~~~  164 (172)
T 2gj8_A          153 VDVLRNHLKQSM  164 (172)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            999999998753

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.97  E-value=1.1e-30  Score=196.94  Aligned_cols=161  Identities=20%  Similarity=0.345  Sum_probs=124.2

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEE------E--EeCCeEEEEEEEecCChhhhhhhhh
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKT------M--YLEDRTVRLQLWDTAGQERFRSLIP   76 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~i~D~~g~~~~~~~~~   76 (170)
                      ...+.+||+++|.+|+|||||++++.+..+...+.++.+.++....      +  ..++....+.+||+||++.+.....
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            4567899999999999999999999999887777788776665442      1  1123457899999999999999999


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCC
Q 030856           77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG  156 (170)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~  156 (170)
                      .++.++|++|+|||+++.   +.+..|+..+.... ++.|+++|+||+|+...+.+..++.+.++...+++++++||++|
T Consensus       117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g  192 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG  192 (535)
T ss_dssp             HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred             HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence            999999999999998764   56677888887765 47999999999999888888889999999999999999999999


Q ss_pred             CChHHHHHHHHhh
Q 030856          157 FNIKGCSPTIRRL  169 (170)
Q Consensus       157 ~~v~~~~~~l~~~  169 (170)
                      .|+++++++|.+.
T Consensus       193 ~gi~eL~~~l~~~  205 (535)
T 3dpu_A          193 DGVESIAKSLKSA  205 (535)
T ss_dssp             --CTTHHHHHHHH
T ss_pred             cCHHHHHHHHHHH
Confidence            9999999999864

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.97  E-value=7.4e-30  Score=164.52  Aligned_cols=150  Identities=18%  Similarity=0.164  Sum_probs=107.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh-------hhhhhhhhhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRD   81 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~   81 (170)
                      .||+++|++|+|||||++++.+.... ....+..+.+........++.  .+.+||+||...       +......++..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            58999999999999999999987653 233344444555555555553  689999999876       34556677899


Q ss_pred             CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCCChH
Q 030856           82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIK  160 (170)
Q Consensus        82 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v~  160 (170)
                      +|++++|+|.+++.+..  ..++..+...  .+.|+++|+||+|+.+.+    +++++++ ..++ +++++||++|.|++
T Consensus        80 ~~~~i~v~d~~~~~~~~--~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~  150 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQA--DYEVAEYLRR--KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE  150 (161)
T ss_dssp             CSEEEEEEESSSCCCHH--HHHHHHHHHH--HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCcccHh--HHHHHHHHHh--cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence            99999999999753322  2233333222  368999999999986542    3334455 5677 89999999999999


Q ss_pred             HHHHHHHhhC
Q 030856          161 GCSPTIRRLI  170 (170)
Q Consensus       161 ~~~~~l~~~i  170 (170)
                      ++|++|.+.+
T Consensus       151 ~l~~~l~~~l  160 (161)
T 2dyk_A          151 ELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999998865

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.97  E-value=4.6e-30  Score=169.71  Aligned_cols=151  Identities=23%  Similarity=0.300  Sum_probs=114.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCC-----------hhhhhhhhhhh
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-----------QERFRSLIPSY   78 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~   78 (170)
                      ++|+++|++|+|||||++++.+..+...+.++.+.......  ..    .+.+|||||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~--~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIE--WK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEE--ET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEe--cC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            68999999999999999999998877666665543333222  22    689999999           67777777778


Q ss_pred             hcC-CcEEEEEEeCCChhhHHhH-HHHHHH--------H-HHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCe
Q 030856           79 IRD-SSVAVVVYDVASRQSFLNT-SKWIDE--------V-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM  147 (170)
Q Consensus        79 ~~~-~d~~i~v~d~~~~~~~~~~-~~~~~~--------~-~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~  147 (170)
                      +.+ +++++++|++.+..+++.+ ..|...        + ......+.|+++|+||+|+...+   .+..+.+++..+++
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~  152 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP  152 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence            776 7766667776666777766 455432        2 22223579999999999987654   56778888888874


Q ss_pred             -------EEEeecCCCCChHHHHHHHHhh
Q 030856          148 -------FIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       148 -------~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                             +++|||++|.|++++|++|.+.
T Consensus       153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  181 (190)
T 2cxx_A          153 LSEIDKVFIPISAKFGDNIERLKNRIFEV  181 (190)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHHH
T ss_pred             hhccCCcEEEEecCCCCCHHHHHHHHHHh
Confidence                   7999999999999999999875

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.96  E-value=5.8e-29  Score=175.84  Aligned_cols=163  Identities=13%  Similarity=0.152  Sum_probs=125.1

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh----------
Q 030856            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR----------   72 (170)
Q Consensus         4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------   72 (170)
                      +++.+.-.|+++|.+|+|||||+|++++.... .+..+..+.+........+ ...++.+|||||.....          
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence            45667789999999999999999999998765 2333333333333333333 13678999999985433          


Q ss_pred             hhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC--CeEEE
Q 030856           73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIE  150 (170)
Q Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~  150 (170)
                      .....++..+|++++|+|++++.+.+....|+..+..   .+.|+++|+||+|+...+....+....+....+  .++++
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~  160 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP  160 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence            5667778899999999999998888887777777665   368999999999987455555677778888875  69999


Q ss_pred             eecCCCCChHHHHHHHHhhC
Q 030856          151 TSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       151 ~S~~~~~~v~~~~~~l~~~i  170 (170)
                      +||++|.|+++++++|.+.+
T Consensus       161 vSA~~g~gv~~L~~~l~~~l  180 (308)
T 3iev_A          161 ISALKGANLDELVKTILKYL  180 (308)
T ss_dssp             CBTTTTBSHHHHHHHHHHHS
T ss_pred             EeCCCCCCHHHHHHHHHHhC
Confidence            99999999999999998753

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.96  E-value=1.4e-29  Score=174.93  Aligned_cols=154  Identities=17%  Similarity=0.200  Sum_probs=117.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh------hhhhhh-
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIPSYI-   79 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~-   79 (170)
                      .+.++|+++|.+|+|||||+|++.+........+..+.+.....+...+  ..+.+|||||...+..      ....++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            4679999999999999999999998766444445455454444444443  6899999999877654      224555 


Q ss_pred             -cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCC
Q 030856           80 -RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (170)
Q Consensus        80 -~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  158 (170)
                       ..+|++++|+|+++.++..   .|...+..   .+.|+++|+||+|+...+.+. .+.+.+++.++++++++||++|.|
T Consensus        81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~vi~~SA~~g~g  153 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMK-IDRYELQKHLGIPVVFTSSVTGEG  153 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCSCEEECCTTTCTT
T ss_pred             hcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchH-HHHHHHHHHcCCCEEEEEeeCCcC
Confidence             5899999999999876543   34444433   479999999999986555544 246778889999999999999999


Q ss_pred             hHHHHHHHHhh
Q 030856          159 IKGCSPTIRRL  169 (170)
Q Consensus       159 v~~~~~~l~~~  169 (170)
                      ++++|++|.+.
T Consensus       154 i~el~~~i~~~  164 (258)
T 3a1s_A          154 LEELKEKIVEY  164 (258)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998763

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.96  E-value=8.6e-29  Score=164.17  Aligned_cols=158  Identities=19%  Similarity=0.258  Sum_probs=113.2

Q ss_pred             CCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCC----------hhhh
Q 030856            2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERF   71 (170)
Q Consensus         2 ~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~   71 (170)
                      ...+....++|+++|++|+|||||++++.+.... ...++.+.+........+.   .+.+|||||          .+.+
T Consensus        16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~   91 (195)
T 3pqc_A           16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLW   91 (195)
T ss_dssp             TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHH
T ss_pred             hhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHH
Confidence            3445567899999999999999999999988732 2233333222222222222   478999999          6677


Q ss_pred             hhhhhhhhcCC---cEEEEEEeCCChhhH--HhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc--ccCHHHHHHHHHhc
Q 030856           72 RSLIPSYIRDS---SVAVVVYDVASRQSF--LNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR--QVSIEEGEAKSREL  144 (170)
Q Consensus        72 ~~~~~~~~~~~---d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~--~~~~~~~~~~~~~~  144 (170)
                      ......++..+   |++++|+|.+++.+.  ..+..|+..      .+.|+++|+||+|+....  ....++++.++...
T Consensus        92 ~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~  165 (195)
T 3pqc_A           92 KRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKY  165 (195)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhc
Confidence            77777777766   999999998875332  233334332      268999999999986543  33345566666664


Q ss_pred             C-CeEEEeecCCCCChHHHHHHHHhh
Q 030856          145 N-VMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       145 ~-~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      + ++++++||++|.|++++|++|.+.
T Consensus       166 ~~~~~~~~Sa~~~~gv~~l~~~l~~~  191 (195)
T 3pqc_A          166 GEYTIIPTSSVTGEGISELLDLISTL  191 (195)
T ss_dssp             CCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHH
Confidence            4 699999999999999999999875

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.96  E-value=8.3e-30  Score=175.74  Aligned_cols=150  Identities=15%  Similarity=0.196  Sum_probs=116.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh----------hhhhhh
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----------LIPSYI   79 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~   79 (170)
                      .+|+++|.+|+|||||+|++.+........++.+.+.....+..++.  .+.+|||||...+..          ....++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            48999999999999999999988655445566666666666666664  789999999876653          455566


Q ss_pred             --cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCC
Q 030856           80 --RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF  157 (170)
Q Consensus        80 --~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  157 (170)
                        .++|++++|+|+++.++...+..++.      ..+.|+++|+||+|+...+.... ....+++..+++++++||++|.
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~------~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~  152 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQLF------ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI  152 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHHHT------TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHHHH------HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence              89999999999998766555444322      23799999999999865443322 2455778889999999999999


Q ss_pred             ChHHHHHHHHh
Q 030856          158 NIKGCSPTIRR  168 (170)
Q Consensus       158 ~v~~~~~~l~~  168 (170)
                      |+++++++|.+
T Consensus       153 gi~el~~~i~~  163 (256)
T 3iby_A          153 GIPALQQSLLH  163 (256)
T ss_dssp             SHHHHHHHHHT
T ss_pred             CHHHHHHHHHh
Confidence            99999999975

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.96  E-value=1.1e-29  Score=176.41  Aligned_cols=152  Identities=13%  Similarity=0.137  Sum_probs=114.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh------hhhhhhhc-
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSYIR-   80 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~-   80 (170)
                      ..++|+++|++|+|||||+|++.+........+..+.+..  ...+.. ...+.+|||||...+.      .....++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~--~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERK--SGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCE--EEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEE--EEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            3589999999999999999999987644333343333322  223344 5679999999988765      34556665 


Q ss_pred             -CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCCh
Q 030856           81 -DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (170)
Q Consensus        81 -~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v  159 (170)
                       .+|++++|+|+++.++.   ..|...+..   .+.|+++|+||+|+...+.+. .....+++..+++++++||++|.|+
T Consensus        79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi  151 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV  151 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred             CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence             69999999999986554   344444443   479999999999986554444 4567788889999999999999999


Q ss_pred             HHHHHHHHhh
Q 030856          160 KGCSPTIRRL  169 (170)
Q Consensus       160 ~~~~~~l~~~  169 (170)
                      +++|++|.+.
T Consensus       152 ~el~~~i~~~  161 (272)
T 3b1v_A          152 DQVVKKAAHT  161 (272)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHHH
Confidence            9999999864

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.96  E-value=1.1e-29  Score=176.86  Aligned_cols=153  Identities=20%  Similarity=0.242  Sum_probs=116.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh----------hhhh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----------LIPS   77 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~   77 (170)
                      ++++|+++|.+|+|||||+|++.+........++.+.+.....+...+  ..+.+|||||...+..          ....
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence            579999999999999999999998875544455555566666665554  4678999999876652          2233


Q ss_pred             hh--cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCC
Q 030856           78 YI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA  155 (170)
Q Consensus        78 ~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  155 (170)
                      ++  ..+|++++|+|+++.++...+..++...      +.|+++|+||+|+.+.+... .....+++..+++++++||++
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~------~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~  152 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERNLYLTLQLLEL------GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTR  152 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH------TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGG
T ss_pred             HHhhcCCCEEEEEecCCChHHHHHHHHHHHhc------CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCC
Confidence            33  6899999999999876655544443332      69999999999986544332 234667888899999999999


Q ss_pred             CCChHHHHHHHHhh
Q 030856          156 GFNIKGCSPTIRRL  169 (170)
Q Consensus       156 ~~~v~~~~~~l~~~  169 (170)
                      |.|+++++++|.+.
T Consensus       153 g~gi~el~~~i~~~  166 (274)
T 3i8s_A          153 GRGIEALKLAIDRY  166 (274)
T ss_dssp             GHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999999999865

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=1.3e-29  Score=171.11  Aligned_cols=149  Identities=17%  Similarity=0.234  Sum_probs=107.3

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCC---CccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhh
Q 030856            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS   77 (170)
Q Consensus         1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   77 (170)
                      |......+.++|+++|++|+|||||++++.+..+..   .+.++.+.++         ....+.+||+||++.+...+..
T Consensus         4 ~~~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~   74 (218)
T 1nrj_B            4 MGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSD   74 (218)
T ss_dssp             ------CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHH
T ss_pred             CCCCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHH
Confidence            334445678999999999999999999999887643   2344443222         3457899999999999888888


Q ss_pred             hhcC----CcEEEEEEeCC-ChhhHHhHHHHHHHHHHh----cCCCCeEEEEEeCCCCCCCcccC------HHHHHHHHH
Q 030856           78 YIRD----SSVAVVVYDVA-SRQSFLNTSKWIDEVRTE----RGSDVIIVLVGNKTDLVEKRQVS------IEEGEAKSR  142 (170)
Q Consensus        78 ~~~~----~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~----~~~~~~~vvv~nK~D~~~~~~~~------~~~~~~~~~  142 (170)
                      ++..    +|++++|||++ +++++.....|+..+...    ...+.|+++|+||+|+...+.+.      .+++..++.
T Consensus        75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~  154 (218)
T 1nrj_B           75 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIE  154 (218)
T ss_dssp             HHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHH
Confidence            8887    89999999999 888999998888887654    34689999999999998766544      455666666


Q ss_pred             hcCCeEEEeecCCCCC
Q 030856          143 ELNVMFIETSAKAGFN  158 (170)
Q Consensus       143 ~~~~~~~~~S~~~~~~  158 (170)
                      ..+++++++|+++|.+
T Consensus       155 ~~~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          155 RRKKSLNEVERKINEE  170 (218)
T ss_dssp             HHHHHHHC--------
T ss_pred             HHhccccccccccccc
Confidence            6666667777766653

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.96  E-value=1.1e-28  Score=167.17  Aligned_cols=160  Identities=13%  Similarity=0.117  Sum_probs=108.2

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCC--CCCccceeeeeeeEEEEEeC-CeEEEEEEEecCC----------hhh
Q 030856            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKF--DNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAG----------QER   70 (170)
Q Consensus         4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g----------~~~   70 (170)
                      .+....++|+++|.+|+|||||++++++...  .....+..+.+..  ..... .....+.+|||||          .+.
T Consensus        24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~  101 (223)
T 4dhe_A           24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN--YFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAH  101 (223)
T ss_dssp             SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEE--EEEESCTTSCSEEEEECCCCCSSCCCSTHHHH
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceE--EEEecCCCCCcEEEEcCCCCCcccCChhhHHH
Confidence            4456689999999999999999999998863  2222222222222  22222 3335789999999          344


Q ss_pred             hhhhhhhhhcC---CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC--HHHHHHHHHh--
Q 030856           71 FRSLIPSYIRD---SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEEGEAKSRE--  143 (170)
Q Consensus        71 ~~~~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~--~~~~~~~~~~--  143 (170)
                      +......++..   +|++++|+|.+++.+. ....++..+..   .+.|+++|+||+|+.......  .+...+....  
T Consensus       102 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~  177 (223)
T 4dhe_A          102 WEQLLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR  177 (223)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh
Confidence            56666666665   7889999999875332 22334444433   468999999999987543321  1222222332  


Q ss_pred             -----cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          144 -----LNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       144 -----~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                           .+++++++||++|.|+++++++|.+.
T Consensus       178 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  208 (223)
T 4dhe_A          178 DAGYAGKLTVQLFSALKRTGLDDAHALIESW  208 (223)
T ss_dssp             HHTCCSCEEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             hcccCCCCeEEEeecCCCcCHHHHHHHHHHh
Confidence                 45699999999999999999999875

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.95  E-value=3.2e-28  Score=169.44  Aligned_cols=154  Identities=21%  Similarity=0.225  Sum_probs=117.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh------hhhhhh--
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIPSYI--   79 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--   79 (170)
                      +.++|+++|++|+|||||++++.+........++.+.+.........+.  .+.+|||||...+..      ....++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            4689999999999999999999988765455566666666666666553  589999999887655      455555  


Q ss_pred             cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCCh
Q 030856           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (170)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v  159 (170)
                      .++|++++|+|+++.+.   ...|...+...  ...|+++|+||+|+.+.+....+ ...+++..+++++++||++|.|+
T Consensus        80 ~~~d~vi~v~D~~~~~~---~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi  153 (271)
T 3k53_A           80 GNADVIVDIVDSTCLMR---NLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGV  153 (271)
T ss_dssp             TCCSEEEEEEEGGGHHH---HHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTH
T ss_pred             cCCcEEEEEecCCcchh---hHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCH
Confidence            68999999999987532   23333333332  23899999999998654443322 67788888999999999999999


Q ss_pred             HHHHHHHHhh
Q 030856          160 KGCSPTIRRL  169 (170)
Q Consensus       160 ~~~~~~l~~~  169 (170)
                      +++++++.+.
T Consensus       154 ~~l~~~i~~~  163 (271)
T 3k53_A          154 EELKRMIALM  163 (271)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999764

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.95  E-value=2e-27  Score=167.28  Aligned_cols=158  Identities=17%  Similarity=0.146  Sum_probs=109.4

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh--------h
Q 030856            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------F   71 (170)
Q Consensus         1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~   71 (170)
                      |++.  .+..+|+++|.+|+|||||+|++++.... .+..+..+.+........+  ..++.+|||||...        +
T Consensus         1 m~~~--~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~   76 (301)
T 1wf3_A            1 MAEK--TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFM   76 (301)
T ss_dssp             --CC--CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHH
T ss_pred             CCCC--ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHH
Confidence            4553  56678999999999999999999998764 2233333322222222222  36799999999765        4


Q ss_pred             hhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHH-HHHHHhcCCCCeEEEEEeCCCCCCCcc-cCHHHHHHHHHhcC-CeE
Q 030856           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLVEKRQ-VSIEEGEAKSRELN-VMF  148 (170)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~vvv~nK~D~~~~~~-~~~~~~~~~~~~~~-~~~  148 (170)
                      ......++..+|++++|+|++++.+..  ..|+ ..+... .++.|+++|+||+|+...+. + .+.++.+   .+ .++
T Consensus        77 ~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~---~~~~~~  149 (301)
T 1wf3_A           77 DQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKYPEEA-MKAYHEL---LPEAEP  149 (301)
T ss_dssp             HHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHHH-HHHHHHT---STTSEE
T ss_pred             HHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEECcccCCchHHH-HHHHHHh---cCcCcE
Confidence            455667789999999999998764433  3443 344433 24799999999999865433 2 1222222   23 489


Q ss_pred             EEeecCCCCChHHHHHHHHhh
Q 030856          149 IETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       149 ~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      +++||++|.|+++++++|.+.
T Consensus       150 ~~iSA~~g~gv~~l~~~l~~~  170 (301)
T 1wf3_A          150 RMLSALDERQVAELKADLLAL  170 (301)
T ss_dssp             EECCTTCHHHHHHHHHHHHTT
T ss_pred             EEEeCCCCCCHHHHHHHHHHh
Confidence            999999999999999999865

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.95  E-value=4.9e-28  Score=176.70  Aligned_cols=159  Identities=19%  Similarity=0.192  Sum_probs=115.1

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh-------
Q 030856            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------   74 (170)
Q Consensus         3 ~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------   74 (170)
                      ..+....++|+++|..|+|||||++++.+.... ....+..+.+.........+.. ++.+|||||..++...       
T Consensus        28 ~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~  106 (423)
T 3qq5_A           28 LPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEK  106 (423)
T ss_dssp             C---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHH
T ss_pred             cCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHH
Confidence            344567899999999999999999999988763 3334444445555555555543 7899999998876544       


Q ss_pred             hhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecC
Q 030856           75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK  154 (170)
Q Consensus        75 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  154 (170)
                      ...++.++|++++|+|++..+   ....|+..+...   +.|+++|+||+|+...+..  +..+.+++.++++++++||+
T Consensus       107 ~~~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAk  178 (423)
T 3qq5_A          107 ARRVFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSAL  178 (423)
T ss_dssp             HHHHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSC
T ss_pred             HHHHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECC
Confidence            455788999999999984332   335555555543   7999999999999776554  66777888889999999999


Q ss_pred             CCCChHHHHHHHHhhC
Q 030856          155 AGFNIKGCSPTIRRLI  170 (170)
Q Consensus       155 ~~~~v~~~~~~l~~~i  170 (170)
                      +|.|++++|++|.+.+
T Consensus       179 tg~gI~eL~~~L~~~l  194 (423)
T 3qq5_A          179 QKKGFDDIGKTISEIL  194 (423)
T ss_dssp             CTTSTTTHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHhh
Confidence            9999999999998764

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.95  E-value=3.8e-27  Score=174.51  Aligned_cols=155  Identities=15%  Similarity=0.143  Sum_probs=98.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC-CCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhh--------hhh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------PSY   78 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~   78 (170)
                      ..++|+++|.+|+|||||+|+|.+... .....+..+.+.....+..++  ..+.+|||||..++...+        ..+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            358899999999999999999998753 244455556666666666666  579999999987765443        336


Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCC
Q 030856           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (170)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  158 (170)
                      +..+|++++|+|++++.+++.+..+...+.. . .+.|+++|+||+|+.......   .+.+......+++++||++|.|
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l-~~~piIvV~NK~Dl~~~~~~~---~~~l~~~~~~~~i~vSAktg~G  384 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTEIRELKAA-H-PAAKFLTVANKLDRAANADAL---IRAIADGTGTEVIGISALNGDG  384 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHHHHHHHHH-C-TTSEEEEEEECTTSCTTTHHH---HHHHHHHHTSCEEECBTTTTBS
T ss_pred             cccCCEEEEEEECCCCcchhhhHHHHHHHHh-c-CCCCEEEEEECcCCCCccchh---HHHHHhcCCCceEEEEECCCCC
Confidence            7899999999999998877654333332222 2 279999999999997655432   2334444347899999999999


Q ss_pred             hHHHHHHHHhh
Q 030856          159 IKGCSPTIRRL  169 (170)
Q Consensus       159 v~~~~~~l~~~  169 (170)
                      +++++++|.+.
T Consensus       385 I~eL~~~i~~~  395 (476)
T 3gee_A          385 IDTLKQHMGDL  395 (476)
T ss_dssp             HHHHHHHHTHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999764

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.95  E-value=4.7e-27  Score=173.27  Aligned_cols=157  Identities=21%  Similarity=0.201  Sum_probs=112.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCCh----------hhhhhhh
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRSLI   75 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~   75 (170)
                      ...++|+++|.+|+|||||+|++++.... ....+..+.+.....+..++.  .+.+|||||.          +.|....
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence            45699999999999999999999987653 333455555655556666664  4899999997          4444443


Q ss_pred             h-hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHH-----HHHhcCCeEE
Q 030856           76 P-SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEA-----KSRELNVMFI  149 (170)
Q Consensus        76 ~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~  149 (170)
                      . .++..+|++++|+|++++.+++.. .|+..+..   .+.|+++|+||+|+.+.+....++..+     +....+++++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~  326 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  326 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence            3 478899999999999998777765 45555543   479999999999998766544333322     2223467999


Q ss_pred             EeecCCCCChHHHHHHHHhh
Q 030856          150 ETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       150 ~~S~~~~~~v~~~~~~l~~~  169 (170)
                      ++||++|.|++++|+.+.+.
T Consensus       327 ~~SA~tg~~v~~l~~~i~~~  346 (436)
T 2hjg_A          327 FMSALTKKRIHTLMPAIIKA  346 (436)
T ss_dssp             ECCTTTCTTGGGHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHH
Confidence            99999999999999988753

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.94  E-value=3.6e-26  Score=164.67  Aligned_cols=158  Identities=19%  Similarity=0.171  Sum_probs=117.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh---------hhhhh
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR---------SLIPS   77 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~   77 (170)
                      ...++|+++|.+|+|||||++++.+........+..+.+.........  ...+.+|||||.....         .....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            456899999999999999999999876432222222223333333333  3578999999975321         12223


Q ss_pred             hhcCCcEEEEEEeCCChh--hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCC
Q 030856           78 YIRDSSVAVVVYDVASRQ--SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA  155 (170)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~  155 (170)
                      +...+|++++|+|++++.  +++....|+..+..... +.|+++|+||+|+.....+  ++...++...+++++++||++
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~  319 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALK  319 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCC
Confidence            455799999999998876  67778888888877653 7999999999998654432  456667777889999999999


Q ss_pred             CCChHHHHHHHHhh
Q 030856          156 GFNIKGCSPTIRRL  169 (170)
Q Consensus       156 ~~~v~~~~~~l~~~  169 (170)
                      |+|+++++++|.+.
T Consensus       320 g~gi~~l~~~i~~~  333 (357)
T 2e87_A          320 GTGIDLVKEEIIKT  333 (357)
T ss_dssp             TBTHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHH
Confidence            99999999999864

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.94  E-value=1.5e-26  Score=171.36  Aligned_cols=157  Identities=22%  Similarity=0.238  Sum_probs=115.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCC-CCCccceeeeeeeEEEEEeCCeEEEEEEEecCC----------hhhhhhhh
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRSLI   75 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~   75 (170)
                      ...++|+++|.+|+|||||++++.+... .....++.+.+.....+..++.  .+.+|||||          ++.+....
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence            4579999999999999999999997653 2333444555555555556654  789999999          56666654


Q ss_pred             h-hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhc-----CCeEE
Q 030856           76 P-SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-----NVMFI  149 (170)
Q Consensus        76 ~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~  149 (170)
                      . .++..+|++++|+|++++.+- ....|+..+..   .+.|+++|+||+|+.+.+....++..+.++..     +++++
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  346 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence            4 378899999999999875332 22334444433   47999999999999877777777777776655     57999


Q ss_pred             EeecCCCCChHHHHHHHHhh
Q 030856          150 ETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       150 ~~S~~~~~~v~~~~~~l~~~  169 (170)
                      ++||++|.|++++|+++.+.
T Consensus       347 ~~SA~~g~gv~~l~~~i~~~  366 (456)
T 4dcu_A          347 FMSALTKKRIHTLMPAIIKA  366 (456)
T ss_dssp             ECCTTTCTTGGGHHHHHHHH
T ss_pred             EEcCCCCcCHHHHHHHHHHH
Confidence            99999999999999998764

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.93  E-value=6.1e-26  Score=168.23  Aligned_cols=150  Identities=21%  Similarity=0.290  Sum_probs=113.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCC-CCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh-hhhh--------hhhhh
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-RFRS--------LIPSY   78 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~--------~~~~~   78 (170)
                      .++|+++|.+|+|||||+|++.+... .....+..+.+.....+.+++  ..+.+|||||.. ++..        ....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            38999999999999999999998753 234455556666666666665  468999999987 5432        23467


Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCC
Q 030856           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (170)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  158 (170)
                      +..+|++|+|+|++++.+++... ++..+     .+.|+++|+||+|+...  ...++...++. .+++++++||++|.|
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~G  391 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEG  391 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred             hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence            88999999999999887766533 22222     37899999999998653  34455554432 457899999999999


Q ss_pred             hHHHHHHHHhh
Q 030856          159 IKGCSPTIRRL  169 (170)
Q Consensus       159 v~~~~~~l~~~  169 (170)
                      +++++++|.+.
T Consensus       392 i~eL~~~l~~~  402 (482)
T 1xzp_A          392 LEKLEESIYRE  402 (482)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999875

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.93  E-value=1.9e-26  Score=164.49  Aligned_cols=154  Identities=18%  Similarity=0.122  Sum_probs=113.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh----hhhhhhhhhc---CCc
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPSYIR---DSS   83 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~---~~d   83 (170)
                      +|+++|.+|+|||||++++..........+..+.......+..++ ...+.+||+||..+    +..+...+++   .+|
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d  238 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR  238 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence            689999999999999999998654211122122222222333433 14689999999643    3334455544   599


Q ss_pred             EEEEEEeCCC---hhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC--CeEEEeecCCC
Q 030856           84 VAVVVYDVAS---RQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAKAG  156 (170)
Q Consensus        84 ~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~--~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~~  156 (170)
                      ++|+|+|+++   +++++.+..|+..+..+..  .+.|+++|+||+|+...+    +..+++++..+  ++++++||+++
T Consensus       239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~tg  314 (342)
T 1lnz_A          239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTR  314 (342)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred             EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCCC
Confidence            9999999998   7889999999888887642  479999999999986432    34566666666  68999999999


Q ss_pred             CChHHHHHHHHhh
Q 030856          157 FNIKGCSPTIRRL  169 (170)
Q Consensus       157 ~~v~~~~~~l~~~  169 (170)
                      .|+++++++|.+.
T Consensus       315 ~gi~eL~~~l~~~  327 (342)
T 1lnz_A          315 EGLRELLFEVANQ  327 (342)
T ss_dssp             STTHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHH
Confidence            9999999999875

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.93  E-value=1.3e-24  Score=158.73  Aligned_cols=163  Identities=16%  Similarity=0.091  Sum_probs=115.9

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEE-------EE---------Ee---CCeEEEEEEEe
Q 030856            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSK-------TM---------YL---EDRTVRLQLWD   64 (170)
Q Consensus         4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~-------~~---------~~---~~~~~~~~i~D   64 (170)
                      ....+.++|+++|.+++|||||+++|.+.......... .......       ..         ..   ......+.+||
T Consensus         3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD   81 (403)
T 3sjy_A            3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYA-ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID   81 (403)
T ss_dssp             CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEE-EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcc-ccceeeccccccccceecccccccccccccccccceEEEEE
Confidence            34567899999999999999999999985443211000 0000000       00         00   11236899999


Q ss_pred             cCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc--CHHHHHHHHH
Q 030856           65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSR  142 (170)
Q Consensus        65 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~--~~~~~~~~~~  142 (170)
                      |||++.+......++..+|++++|+|++++.++.....++..+....  ..|+++|+||+|+.+..+.  ..++..++..
T Consensus        82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~  159 (403)
T 3sjy_A           82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTK  159 (403)
T ss_dssp             CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998766677777776655442  3589999999998754322  1223333333


Q ss_pred             hc---CCeEEEeecCCCCChHHHHHHHHhh
Q 030856          143 EL---NVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       143 ~~---~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      ..   +++++++||++|.|+++++++|.+.
T Consensus       160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~  189 (403)
T 3sjy_A          160 GTWAENVPIIPVSALHKINIDSLIEGIEEY  189 (403)
T ss_dssp             TSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             hhCCCCCEEEEEECCCCcChHHHHHHHHHh
Confidence            32   5689999999999999999999874

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.93  E-value=1e-24  Score=159.64  Aligned_cols=161  Identities=20%  Similarity=0.174  Sum_probs=105.2

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCC---CCCccc--eeeeeeeEEEEEe-------------C--C----eEE
Q 030856            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKF---DNTYQA--TIGIDFLSKTMYL-------------E--D----RTV   58 (170)
Q Consensus         3 ~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~   58 (170)
                      |......++|+++|..++|||||+++|.+...   ..+..+  |....+.......             +  +    ...
T Consensus         2 p~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~   81 (408)
T 1s0u_A            2 PLGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLR   81 (408)
T ss_dssp             ---CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEE
T ss_pred             CcccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCccccccc
Confidence            44556789999999999999999999986432   233333  3332333222211             1  1    136


Q ss_pred             EEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCCh----hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc--c
Q 030856           59 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR----QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--V  132 (170)
Q Consensus        59 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~--~  132 (170)
                      .+.+|||||++.+.......+..+|++|+|+|++++    ++.+.+.    .+.. . ...|+++++||+|+.+...  .
T Consensus        82 ~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~-l-~~~~iivv~NK~Dl~~~~~~~~  155 (408)
T 1s0u_A           82 RVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEI-L-GIDKIIIVQNKIDLVDEKQAEE  155 (408)
T ss_dssp             EEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHH-T-TCCCEEEEEECTTSSCTTTTTT
T ss_pred             EEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHH-c-CCCeEEEEEEccCCCCHHHHHH
Confidence            899999999999988888788889999999999853    3444333    2222 1 2347999999999976543  2


Q ss_pred             CHHHHHHHHHh---cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          133 SIEEGEAKSRE---LNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       133 ~~~~~~~~~~~---~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      ..+++++++..   .+++++++||++|.|+++++++|.+.
T Consensus       156 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~  195 (408)
T 1s0u_A          156 NYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDF  195 (408)
T ss_dssp             HHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence            34666677665   36799999999999999999999864

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.93  E-value=4.6e-25  Score=164.11  Aligned_cols=156  Identities=20%  Similarity=0.186  Sum_probs=110.4

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCC-------CCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhh
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDK-------FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS   77 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   77 (170)
                      ..++.++|+++|..++|||||+++|.+..       ...+..+..+.+.....+..++  ..+.+|||||++++......
T Consensus        15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~   92 (482)
T 1wb1_A           15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVS   92 (482)
T ss_dssp             CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHH
T ss_pred             hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHH
Confidence            34568999999999999999999999876       2223333344343333444444  67999999999999998999


Q ss_pred             hhcCCcEEEEEEeCCC---hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc--cCHHHHHHHHHhc----CCeE
Q 030856           78 YIRDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSREL----NVMF  148 (170)
Q Consensus        78 ~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~--~~~~~~~~~~~~~----~~~~  148 (170)
                      .+..+|++++|+|+++   +++.+.+.    .+..   .++|.++|+||+|+.++..  ...++.++++...    ++++
T Consensus        93 ~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i  165 (482)
T 1wb1_A           93 AADIIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI  165 (482)
T ss_dssp             HTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred             HHhhCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence            9999999999999987   33433332    2222   3688899999999875322  1234455555555    5799


Q ss_pred             EEeecCCCCChHHHHHHHHhh
Q 030856          149 IETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       149 ~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      +++||++|+|+++++++|.+.
T Consensus       166 i~vSA~~g~gI~~L~~~L~~~  186 (482)
T 1wb1_A          166 IPISAKTGFGVDELKNLIITT  186 (482)
T ss_dssp             EECCTTTCTTHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHh
Confidence            999999999999999999864

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.93  E-value=4.2e-25  Score=162.98  Aligned_cols=150  Identities=19%  Similarity=0.228  Sum_probs=101.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh---------hhhhhhhhh
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSYI   79 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~   79 (170)
                      .+|+++|.+|||||||+|++++.... ....+..+.+.......+.+.  .+.+|||||.+.         +......++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            47999999999999999999987643 344555666666666666664  578999999653         344567789


Q ss_pred             cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHH-HHHHHhcCC-eEEEeecCCCC
Q 030856           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG-EAKSRELNV-MFIETSAKAGF  157 (170)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~S~~~~~  157 (170)
                      +++|++++|+|.+++.+...  .++..+.+.  .+.|+++|+||+|+...  . ..+. .++. ..++ .++++||++|.
T Consensus        80 ~~ad~il~V~D~~~~~~~~d--~~i~~~l~~--~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~  151 (439)
T 1mky_A           80 READLVLFVVDGKRGITKED--ESLADFLRK--STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEHNI  151 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHH--HHHHHHHHH--HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTTB
T ss_pred             HhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccCCC
Confidence            99999999999987544322  222222222  26899999999997432  1 1222 3443 4566 78999999999


Q ss_pred             ChHHHHHHHHhh
Q 030856          158 NIKGCSPTIRRL  169 (170)
Q Consensus       158 ~v~~~~~~l~~~  169 (170)
                      |++++++++.+.
T Consensus       152 gv~~L~~~i~~~  163 (439)
T 1mky_A          152 NLDTMLETIIKK  163 (439)
T ss_dssp             SHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHh
Confidence            999999999764

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.93  E-value=2e-24  Score=163.35  Aligned_cols=158  Identities=20%  Similarity=0.260  Sum_probs=113.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCC--CCCC-----c------cceeeeee--eEEEEEe---CCeEEEEEEEecCCh
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDK--FDNT-----Y------QATIGIDF--LSKTMYL---EDRTVRLQLWDTAGQ   68 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~--~~~~-----~------~~~~~~~~--~~~~~~~---~~~~~~~~i~D~~g~   68 (170)
                      .+..+|+++|+.++|||||+++|+...  ....     .      ....+.+.  ......+   ++..+.+.+|||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            456899999999999999999998631  1100     0      00111111  1112212   455689999999999


Q ss_pred             hhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC--
Q 030856           69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV--  146 (170)
Q Consensus        69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~--  146 (170)
                      .++......++..+|++|+|+|+++..+.+....|.....    .++|+++|+||+|+...+  ..+...++....++  
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~  157 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP  157 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence            9999999999999999999999999877777777755442    479999999999986543  12334556666676  


Q ss_pred             -eEEEeecCCCCChHHHHHHHHhhC
Q 030856          147 -MFIETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       147 -~~~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                       .++++||++|.|+++++++|.+.+
T Consensus       158 ~~vi~vSAktg~GI~~Lle~I~~~l  182 (600)
T 2ywe_A          158 EEAILASAKEGIGIEEILEAIVNRI  182 (600)
T ss_dssp             GGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred             ccEEEEEeecCCCchHHHHHHHHhc
Confidence             489999999999999999998754

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.93  E-value=1.2e-24  Score=164.69  Aligned_cols=157  Identities=18%  Similarity=0.219  Sum_probs=110.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCC--CCC-----C------ccceeeeeeeE--EEEEe---CCeEEEEEEEecCChh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDK--FDN-----T------YQATIGIDFLS--KTMYL---EDRTVRLQLWDTAGQE   69 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~--~~~-----~------~~~~~~~~~~~--~~~~~---~~~~~~~~i~D~~g~~   69 (170)
                      +-.||+++|+.++|||||+++|+...  ...     .      ..+..+.+...  ..+.+   ++..+.+.+|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            45799999999999999999998632  110     0      01112222222  22222   4557899999999999


Q ss_pred             hhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC---
Q 030856           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV---  146 (170)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~---  146 (170)
                      ++...+..++..+|++|+|+|+++..+.+....|.....    .++|+++|+||+|+...+  ..+..+++....++   
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~  156 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT  156 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence            999999999999999999999998777777777655442    478999999999997643  22334556666676   


Q ss_pred             eEEEeecCCCCChHHHHHHHHhhC
Q 030856          147 MFIETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       147 ~~~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                      .++++||++|.|+++++++|.+.+
T Consensus       157 ~vi~vSAktg~GI~~Ll~~I~~~l  180 (599)
T 3cb4_D          157 DAVRCSAKTGVGVQDVLERLVRDI  180 (599)
T ss_dssp             TCEEECTTTCTTHHHHHHHHHHHS
T ss_pred             eEEEeecccCCCchhHHHHHhhcC
Confidence            499999999999999999998754

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.93  E-value=2.8e-25  Score=152.01  Aligned_cols=161  Identities=14%  Similarity=0.135  Sum_probs=105.3

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccc--eeeeeeeEEEEEeCCeEEEEEEEecCCh-----------hhh
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA--TIGIDFLSKTMYLEDRTVRLQLWDTAGQ-----------ERF   71 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~-----------~~~   71 (170)
                      +....++|+++|.+|+|||||+|++++........+  +.+.+........++  ..+.+|||||.           ..+
T Consensus        25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~  102 (239)
T 3lxx_A           25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI  102 (239)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence            345679999999999999999999999877655444  344444444455555  46899999993           344


Q ss_pred             hhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCcccC------HHHHHHHHHh
Q 030856           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVS------IEEGEAKSRE  143 (170)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~vvv~nK~D~~~~~~~~------~~~~~~~~~~  143 (170)
                      ......+++++|++|+|+|+++...  ....|+..+....+  ...|+++|+||+|+...+.+.      .+.++.++..
T Consensus       103 ~~~~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~  180 (239)
T 3lxx_A          103 IRCILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI  180 (239)
T ss_dssp             HHHHHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence            4555556678899999999875433  11233333322211  246899999999987654433      2467888888


Q ss_pred             cCCeEEEeecCCC-----CChHHHHHHHHhh
Q 030856          144 LNVMFIETSAKAG-----FNIKGCSPTIRRL  169 (170)
Q Consensus       144 ~~~~~~~~S~~~~-----~~v~~~~~~l~~~  169 (170)
                      .+..++.++...+     .++.++++.+.+.
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~  211 (239)
T 3lxx_A          181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRV  211 (239)
T ss_dssp             HSSSEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCccccHHHHHHHHHHHHHH
Confidence            8888888877644     6888988887653

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.93  E-value=2e-25  Score=155.57  Aligned_cols=164  Identities=13%  Similarity=0.213  Sum_probs=95.1

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCc-------cceeeeeeeEEEEEeCCeEEEEEEEecCChhh----
Q 030856            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTY-------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----   70 (170)
Q Consensus         3 ~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----   70 (170)
                      |+.....++|+++|.+|+|||||+|+|++.... ..+       .++.+.+........++..+++.+|||||...    
T Consensus         2 p~~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~   81 (274)
T 3t5d_A            2 PLGSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN   81 (274)
T ss_dssp             -----CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCC
T ss_pred             CCcCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccc
Confidence            344556799999999999999999998876554 333       45555555555555556667999999999632    


Q ss_pred             ---hhhhh-------hhhhc-------------CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856           71 ---FRSLI-------PSYIR-------------DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        71 ---~~~~~-------~~~~~-------------~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~  127 (170)
                         +....       ..++.             ++|+++++++.++.........++..+..    ++|+++|+||+|+.
T Consensus        82 ~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~  157 (274)
T 3t5d_A           82 SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTL  157 (274)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGS
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCC
Confidence               22222       33333             37899999987652211222333333332    79999999999986


Q ss_pred             CCcccC--HHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhhC
Q 030856          128 EKRQVS--IEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       128 ~~~~~~--~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                      ...+..  .+...+.....+++++++|+.+++|+++++++|.+.+
T Consensus       158 ~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          158 TPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             CHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            533322  2345555667889999999999999999999998753

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.92  E-value=4.4e-25  Score=157.97  Aligned_cols=113  Identities=18%  Similarity=0.221  Sum_probs=96.9

Q ss_pred             EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCC----------hhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCC
Q 030856           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS----------RQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTD  125 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D  125 (170)
                      .+.+.+||++|++.++..|..++++++++|||||+++          ..++.....|+..+.... ..+.|++||+||+|
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D  271 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD  271 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence            4789999999999999999999999999999999998          567888888888887643 26799999999999


Q ss_pred             CCCCc---------------ccCHHHHHHHHH-----------hcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          126 LVEKR---------------QVSIEEGEAKSR-----------ELNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       126 ~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      +..++               .++.+++..++.           ..++.+++|||+++.|++++|+++.+.
T Consensus       272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~  341 (353)
T 1cip_A          272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDV  341 (353)
T ss_dssp             HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHH
Confidence            85332               356788888886           356799999999999999999999864

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.92  E-value=1.6e-24  Score=152.65  Aligned_cols=156  Identities=15%  Similarity=0.201  Sum_probs=107.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChh-h--------hhhhhh
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-R--------FRSLIP   76 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~--------~~~~~~   76 (170)
                      .+..+|+++|++|+|||||+|++.+.... .+..+..+.+........+  ..++.+|||||.. .        +.....
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~   83 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAAS   83 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence            45678999999999999999999987653 1222222222222222222  3578999999986 2        233345


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCC
Q 030856           77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKA  155 (170)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~  155 (170)
                      .++..+|++++|+|.++   +.....|+.....  ..+.|+++++||+|+...+....+....+...+++ .++++||++
T Consensus        84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~  158 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET  158 (301)
T ss_dssp             SCCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred             HHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence            66788999999999876   3333334333222  24789999999999865333333555666666776 799999999


Q ss_pred             CCChHHHHHHHHhh
Q 030856          156 GFNIKGCSPTIRRL  169 (170)
Q Consensus       156 ~~~v~~~~~~l~~~  169 (170)
                      +.|++++++.+.+.
T Consensus       159 g~~v~~l~~~i~~~  172 (301)
T 1ega_A          159 GLNVDTIAAIVRKH  172 (301)
T ss_dssp             TTTHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999999864

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.92  E-value=1.1e-25  Score=166.23  Aligned_cols=150  Identities=20%  Similarity=0.250  Sum_probs=101.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhh--------hh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP--------SY   78 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~--------~~   78 (170)
                      ..++|+++|++|+|||||+|+|.+.... ....++.+.+.....+..++  ..+.+|||||..++.....        .+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            3578999999999999999999986432 33345555566555666666  4689999999766544333        35


Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCC
Q 030856           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (170)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~  158 (170)
                      +..+|++++|+|.+++.+... ..|+..+     .+.|+++|+||+|+.......  ..+.+.  .+.+++++||++|.|
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l-----~~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G  370 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-QEIYEQV-----KHRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG  370 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-HHHHHHH-----TTSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred             hhcCCEEEEEeccCCCCCHHH-HHHHHhc-----cCCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence            788999999999998755544 3444443     237999999999997655443  111111  356899999999999


Q ss_pred             hHHHHHHHHhh
Q 030856          159 IKGCSPTIRRL  169 (170)
Q Consensus       159 v~~~~~~l~~~  169 (170)
                      +++++++|.+.
T Consensus       371 i~eL~~~i~~~  381 (462)
T 3geh_A          371 IDSLETAILEI  381 (462)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999864

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.92  E-value=5.7e-24  Score=153.05  Aligned_cols=158  Identities=19%  Similarity=0.110  Sum_probs=106.3

Q ss_pred             cee-EEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh---------hhhhhhhhh
Q 030856            9 KYK-LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLIPSY   78 (170)
Q Consensus         9 ~~~-i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~   78 (170)
                      .++ |+++|++|+|||||+|++.+........+..+.+.....+.+++  ..+.+|||+|..         .+... ...
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~  254 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSE  254 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHH
Confidence            355 99999999999999999998876433344444455556666666  468999999962         22222 234


Q ss_pred             hcCCcEEEEEEeCCChh--hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc-CHHHHHHHHHhc---CCeEEEee
Q 030856           79 IRDSSVAVVVYDVASRQ--SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSREL---NVMFIETS  152 (170)
Q Consensus        79 ~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~S  152 (170)
                      +..+|++++|+|++++.  ..+....|...+......+.|+++|+||+|+...... ..+.+..+++..   +.+++++|
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S  334 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS  334 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            78899999999999876  5555555555555443467899999999998653311 012233344444   34789999


Q ss_pred             cCCCCChHHHHHHHHhh
Q 030856          153 AKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       153 ~~~~~~v~~~~~~l~~~  169 (170)
                      |+++.|+++++++|.+.
T Consensus       335 A~~g~gi~~L~~~I~~~  351 (364)
T 2qtf_A          335 ALKRTNLELLRDKIYQL  351 (364)
T ss_dssp             TTTTBSHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHH
Confidence            99999999999999764

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.92  E-value=3.9e-24  Score=156.62  Aligned_cols=158  Identities=19%  Similarity=0.169  Sum_probs=110.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCC---CCCccc--eeeeeeeEEEEEe-------------C--C----eEEEEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF---DNTYQA--TIGIDFLSKTMYL-------------E--D----RTVRLQ   61 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~   61 (170)
                      ....++|+++|+.++|||||+++|.+...   ..+..+  |....+....+..             +  +    ....+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            35569999999999999999999996432   233334  3322332222211             1  1    136899


Q ss_pred             EEecCChhhhhhhhhhhhcCCcEEEEEEeCCCh----hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc--cCHH
Q 030856           62 LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR----QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIE  135 (170)
Q Consensus        62 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~--~~~~  135 (170)
                      +|||||++.|.......+..+|++|+|+|+++.    ++.+.+.    .+...  ...|+++++||+|+.+...  ...+
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~  160 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQII--GQKNIIIAQNKIELVDKEKALENYR  160 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHH--TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHc--CCCcEEEEEECccCCCHHHHHHHHH
Confidence            999999999988888888899999999999853    3333333    22222  1357999999999875432  2234


Q ss_pred             HHHHHHHh---cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          136 EGEAKSRE---LNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       136 ~~~~~~~~---~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      +.++++..   .+++++++||++|.|+++++++|.+.
T Consensus       161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~  197 (410)
T 1kk1_A          161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDF  197 (410)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence            45555554   36799999999999999999999864

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.92  E-value=1.1e-24  Score=154.00  Aligned_cols=113  Identities=15%  Similarity=0.142  Sum_probs=95.4

Q ss_pred             EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCC----------ChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCC
Q 030856           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA----------SRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTD  125 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D  125 (170)
                      .+++++||++|++.++..|..|+++++++|+|||++          +.+++.....|+..+..... .+.|+++++||+|
T Consensus       166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D  245 (327)
T 3ohm_A          166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD  245 (327)
T ss_dssp             TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred             ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence            378999999999999999999999999999999655          66778888888888765433 6899999999999


Q ss_pred             CCCCc----------------ccCHHHHHHHH----------HhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          126 LVEKR----------------QVSIEEGEAKS----------RELNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       126 ~~~~~----------------~~~~~~~~~~~----------~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      +.+++                ..+.+++.+++          ...++.++++||+++.||+++|+.+.+.
T Consensus       246 L~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~  315 (327)
T 3ohm_A          246 LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT  315 (327)
T ss_dssp             HHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHH
Confidence            86543                46778888884          3566788999999999999999998864

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.92  E-value=1.1e-24  Score=150.72  Aligned_cols=160  Identities=11%  Similarity=0.086  Sum_probs=102.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCC-CCCccce-eeeeeeEEEEEeCCeEEEEEEEecCChhhhhh----------
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQAT-IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----------   73 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------   73 (170)
                      ..+.++|+++|.+|+|||||++++++... .....++ .+.+.........+  ..+.+|||||...+..          
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~   96 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ   96 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence            44679999999999999999999998763 3333333 33344444444444  4689999999765432          


Q ss_pred             -hhhhhhcCCcEEEEEEeCCChhh-HHhHHHHHHHHHHhcCCCCeEEEEEe-CCCCCCCcccCH-------HHHHHHHHh
Q 030856           74 -LIPSYIRDSSVAVVVYDVASRQS-FLNTSKWIDEVRTERGSDVIIVLVGN-KTDLVEKRQVSI-------EEGEAKSRE  143 (170)
Q Consensus        74 -~~~~~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~vvv~n-K~D~~~~~~~~~-------~~~~~~~~~  143 (170)
                       ....+++.+|++++|+|+++... ...+..++..+.... ...|+++++| |+|+... ....       .+++.++..
T Consensus        97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~  174 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAA  174 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHH
Confidence             22236788999999999986222 122223333322111 1345555556 9998743 2211       234445555


Q ss_pred             cCCe---E--EEeecCCCCChHHHHHHHHhh
Q 030856          144 LNVM---F--IETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       144 ~~~~---~--~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      .+..   +  +++||+++.|++++|++|.+.
T Consensus       175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~  205 (260)
T 2xtp_A          175 CGGRICAFNNRAEGSNQDDQVKELMDCIEDL  205 (260)
T ss_dssp             TTTCEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             hCCeEEEecCcccccccHHHHHHHHHHHHHH
Confidence            5432   2  789999999999999999864

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.92  E-value=4.3e-24  Score=157.34  Aligned_cols=154  Identities=18%  Similarity=0.207  Sum_probs=104.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCccceeeeeeeEEEEEeC
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF-------------------------------DNTYQATIGIDFLSKTMYLE   54 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   54 (170)
                      ....++|+++|.+++|||||+++|++...                               ..+..+..+.+.....+..+
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~   93 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE   93 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence            35679999999999999999999965321                               11112334444444444443


Q ss_pred             CeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhh---HH---hHHHHHHHHHHhcCCCCe-EEEEEeCCCCC
Q 030856           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQS---FL---NTSKWIDEVRTERGSDVI-IVLVGNKTDLV  127 (170)
Q Consensus        55 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~  127 (170)
                        ...+.||||||+++|......++..+|++|+|+|+++...   |+   .....+..+.   ..++| +++++||+|+.
T Consensus        94 --~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~---~~~v~~iIvviNK~Dl~  168 (439)
T 3j2k_7           94 --KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK---TAGVKHLIVLINKMDDP  168 (439)
T ss_pred             --CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHH---HcCCCeEEEEeecCCCc
Confidence              3589999999999999999999999999999999987532   22   1222222222   23566 89999999985


Q ss_pred             CCc------ccCHHHHHHHHHhcC------CeEEEeecCCCCChHHHHH
Q 030856          128 EKR------QVSIEEGEAKSRELN------VMFIETSAKAGFNIKGCSP  164 (170)
Q Consensus       128 ~~~------~~~~~~~~~~~~~~~------~~~~~~S~~~~~~v~~~~~  164 (170)
                      ...      ....++...+++..+      ++++++||++|.|++++++
T Consensus       169 ~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          169 TVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            321      111234444555444      4799999999999998543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.92  E-value=3e-25  Score=163.65  Aligned_cols=150  Identities=17%  Similarity=0.162  Sum_probs=97.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChh--------hhhhhhhhhh
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE--------RFRSLIPSYI   79 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~   79 (170)
                      ..+|+++|.+|||||||+|+|.+.... ....+..+.+......  ......+.+|||||.+        .+......++
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~--~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~   80 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSA--EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM   80 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEEC--TTCSSCCEEEC---------CHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEE--EECCceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence            468999999999999999999987653 2222333333333333  3333578999999975        5666778889


Q ss_pred             cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCCC
Q 030856           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFN  158 (170)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~  158 (170)
                      .++|++++|+|+.++.+...  .++..+..  ..+.|+++|+||+|+...+..    ..++. ..++ .++++||++|.|
T Consensus        81 ~~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~g  151 (436)
T 2hjg_A           81 DEADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLG  151 (436)
T ss_dssp             HHCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBT
T ss_pred             HhCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCC
Confidence            99999999999987655443  33333322  257899999999998643211    11222 3455 789999999999


Q ss_pred             hHHHHHHHHhh
Q 030856          159 IKGCSPTIRRL  169 (170)
Q Consensus       159 v~~~~~~l~~~  169 (170)
                      ++++++++.+.
T Consensus       152 v~~L~~~i~~~  162 (436)
T 2hjg_A          152 LGDLLDAVAEH  162 (436)
T ss_dssp             HHHHHHHHHHT
T ss_pred             hHHHHHHHHHh
Confidence            99999999864

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.91  E-value=9.5e-24  Score=155.79  Aligned_cols=157  Identities=21%  Similarity=0.225  Sum_probs=105.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh-----------
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-----------   74 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------   74 (170)
                      ...++|+++|++|+|||||+|++.+.... ....+..+.+.....+..++.  .+.+|||+|.......           
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence            35689999999999999999999987542 233344444555555666664  5789999997433221           


Q ss_pred             -hhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHH-----HHHHhcCCeE
Q 030856           75 -IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE-----AKSRELNVMF  148 (170)
Q Consensus        75 -~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~  148 (170)
                       ...++..+|++++++|++++.+.+.. .+...+. .  .+.|+++|+||+|+.+.+....++..     .+....++++
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~-~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLME-R--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL  331 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHH-H--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHH-H--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence             13457789999999999876554432 2222222 2  47999999999998765554443332     2233345799


Q ss_pred             EEeecCCCCChHHHHHHHHhh
Q 030856          149 IETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       149 ~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      +++||++|.|++++|+.+.+.
T Consensus       332 ~~~SA~~g~gv~~l~~~i~~~  352 (439)
T 1mky_A          332 IFTSADKGWNIDRMIDAMNLA  352 (439)
T ss_dssp             EECBTTTTBSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            999999999999999998763

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.91  E-value=2.3e-24  Score=160.65  Aligned_cols=152  Identities=17%  Similarity=0.237  Sum_probs=99.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCC--C-----------------------------CCccceeeeeeeEEEEEeCC
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--D-----------------------------NTYQATIGIDFLSKTMYLED   55 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~   55 (170)
                      ...+||+++|.+++|||||+++|++...  .                             .+..+..+.+.....  +..
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~--~~~  108 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSH--FST  108 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEE--EEC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEE--Eec
Confidence            3569999999999999999999976511  0                             011112222222222  333


Q ss_pred             eEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHh-----HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc
Q 030856           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-----TSKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~  130 (170)
                      ....+.||||||++++......++..+|++|+|+|++++++...     ...+...+.... ...|+++|+||+|+.+.+
T Consensus       109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~~  187 (483)
T 3p26_A          109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWS  187 (483)
T ss_dssp             SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTTC
T ss_pred             CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcccch
Confidence            44679999999999999999999999999999999998644322     122222222222 234699999999997644


Q ss_pred             ccCHHHHH----HHHHhc-----CCeEEEeecCCCCChHH
Q 030856          131 QVSIEEGE----AKSREL-----NVMFIETSAKAGFNIKG  161 (170)
Q Consensus       131 ~~~~~~~~----~~~~~~-----~~~~~~~S~~~~~~v~~  161 (170)
                      +...++..    .+....     +++++++||++|.|+++
T Consensus       188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            43333333    333333     46899999999999985

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.91  E-value=3.7e-25  Score=159.30  Aligned_cols=155  Identities=16%  Similarity=0.245  Sum_probs=87.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCc--------cceeeeeeeEEEEEeCCeEEEEEEEecCCh-------hhh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTY--------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-------ERF   71 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~~   71 (170)
                      ..++|+++|++|+|||||+++|++.... ..+        .++.+.+.........+....+.+|||||.       +.+
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~  115 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF  115 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence            4689999999999999999998765432 222        134444443333444566678999999998       555


Q ss_pred             hhhhh-------hhhcCC-------------cEEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCc
Q 030856           72 RSLIP-------SYIRDS-------------SVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (170)
Q Consensus        72 ~~~~~-------~~~~~~-------------d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~~  130 (170)
                      ..+..       .++..+             |+++|+++.+ ..++..+. .++..+    ..++|+++|+||+|+...+
T Consensus       116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~  190 (361)
T 2qag_A          116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLK  190 (361)
T ss_dssp             CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHH
Confidence            55554       555443             3455555432 34454443 333332    3679999999999997766


Q ss_pred             ccCH--HHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856          131 QVSI--EEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus       131 ~~~~--~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ++..  +++..++..++++++++||+++.+ ++.|.++.+
T Consensus       191 ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~  229 (361)
T 2qag_A          191 ERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTR  229 (361)
T ss_dssp             HHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHH
Confidence            5544  577788888899999999999988 666665554

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.2e-24  Score=142.88  Aligned_cols=118  Identities=18%  Similarity=0.309  Sum_probs=90.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCC---CccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcC-
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD-   81 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~-   81 (170)
                      ..+.++|+++|++|+|||||++++.+..+..   ...++.+.++         ....+.+|||||...+...+..++.. 
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~  115 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR  115 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhh
Confidence            3567899999999999999999999887543   2222222111         34578999999999888877777766 


Q ss_pred             ---CcEEEEEEeCC-ChhhHHhHHHHHHHHHHh----cCCCCeEEEEEeCCCCCCCccc
Q 030856           82 ---SSVAVVVYDVA-SRQSFLNTSKWIDEVRTE----RGSDVIIVLVGNKTDLVEKRQV  132 (170)
Q Consensus        82 ---~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~----~~~~~~~vvv~nK~D~~~~~~~  132 (170)
                         +|++++|||++ +++++..+..|+..+...    ...+.|+++|+||+|+...+.+
T Consensus       116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~  174 (193)
T 2ged_A          116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP  174 (193)
T ss_dssp             GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred             cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence               89999999999 899999998888877654    2358999999999999765544

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.91  E-value=3.5e-26  Score=170.88  Aligned_cols=157  Identities=17%  Similarity=0.178  Sum_probs=112.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      ++++|+++|++++|||||+++|.+..+.....++.+.+.....+..++ ..++.||||||++.+..++..++..+|++++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            568899999999999999999997665444445555444444433322 2368999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC-HHHHHHH---HHhc--CCeEEEeecCCCCChHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-IEEGEAK---SREL--NVMFIETSAKAGFNIKG  161 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~S~~~~~~v~~  161 (170)
                      |+|+++....+....|    ......++|+++++||+|+.+..... ..+....   +..+  .++++++||++|.|+++
T Consensus        82 VVDa~dg~~~qt~e~l----~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e  157 (537)
T 3izy_P           82 VVAADDGVMKQTVESI----QHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA  157 (537)
T ss_dssp             ECBSSSCCCHHHHHHH----HHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred             EEECCCCccHHHHHHH----HHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence            9999986544433322    22223578999999999986532211 1112111   1222  34899999999999999


Q ss_pred             HHHHHHhh
Q 030856          162 CSPTIRRL  169 (170)
Q Consensus       162 ~~~~l~~~  169 (170)
                      ++++|...
T Consensus       158 Lle~I~~l  165 (537)
T 3izy_P          158 LAEATIAL  165 (537)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998753

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.91  E-value=1.1e-23  Score=150.72  Aligned_cols=114  Identities=18%  Similarity=0.161  Sum_probs=91.8

Q ss_pred             eEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCC----------ChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCC
Q 030856           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA----------SRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKT  124 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~  124 (170)
                      ..+.+.+|||+|++.++.++..++++++++|+|||++          +.++++....|+..+.... .++.|++||+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5689999999999999999999999999999999998          7889999999998887643 3689999999999


Q ss_pred             CCCCCcc--c-------------------CHHHHHHHHHh----------------cCCeEEEeecCCCCChHHHHHHHH
Q 030856          125 DLVEKRQ--V-------------------SIEEGEAKSRE----------------LNVMFIETSAKAGFNIKGCSPTIR  167 (170)
Q Consensus       125 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~S~~~~~~v~~~~~~l~  167 (170)
                      |+.+++.  +                   +.+++..++..                ..+.+++|||+++.||+++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9854321  1                   24666666442                234578999999999999999988


Q ss_pred             hh
Q 030856          168 RL  169 (170)
Q Consensus       168 ~~  169 (170)
                      +.
T Consensus       341 ~~  342 (354)
T 2xtz_A          341 ET  342 (354)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.90  E-value=1.4e-23  Score=150.63  Aligned_cols=113  Identities=18%  Similarity=0.172  Sum_probs=88.5

Q ss_pred             EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCC----------hhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCC
Q 030856           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS----------RQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTD  125 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D  125 (170)
                      .+.+.+|||+|++.++..+..++.+++++|||||+++          ..++.....|+..+.... ..+.|+++++||+|
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D  279 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD  279 (362)
T ss_dssp             TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence            3689999999999999999999999999999999998          778999999988887643 36899999999999


Q ss_pred             CCCCc----------------ccCHHHHHHHHH-----------hcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          126 LVEKR----------------QVSIEEGEAKSR-----------ELNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       126 ~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      +.+++                ..+.+++..++.           ..++.+++|||+++.|++++|+++.+.
T Consensus       280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~  350 (362)
T 1zcb_A          280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDT  350 (362)
T ss_dssp             HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHH
Confidence            86422                256777777762           346789999999999999999998864

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.90  E-value=1.3e-23  Score=153.17  Aligned_cols=158  Identities=14%  Similarity=0.099  Sum_probs=108.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCC-------CCCC-------ccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDK-------FDNT-------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS   73 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   73 (170)
                      +.++|+++|.+++|||||+++|.+..       +...       .....+.+.......+......+.+|||||+++|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            46899999999999999999998731       1000       001112222222223333446789999999999988


Q ss_pred             hhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCcc---cCHHHHHHHHHhcC----
Q 030856           74 LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQ---VSIEEGEAKSRELN----  145 (170)
Q Consensus        74 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~~~~---~~~~~~~~~~~~~~----  145 (170)
                      ....++..+|++|+|+|+++....+.. .++..+..   .++| +++++||+|+.....   ...++.+++++..+    
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~  157 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence            888889999999999999985433332 23333332   3678 789999999864221   12245666777665    


Q ss_pred             -CeEEEeecCCCCC----------hHHHHHHHHhh
Q 030856          146 -VMFIETSAKAGFN----------IKGCSPTIRRL  169 (170)
Q Consensus       146 -~~~~~~S~~~~~~----------v~~~~~~l~~~  169 (170)
                       ++++++||++|.|          +++++++|.+.
T Consensus       158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~  192 (397)
T 1d2e_A          158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (397)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHh
Confidence             5899999999764          88999998764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.90  E-value=2.5e-24  Score=159.56  Aligned_cols=154  Identities=17%  Similarity=0.157  Sum_probs=99.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCC--------hhhhhhhhhh
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG--------QERFRSLIPS   77 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~~   77 (170)
                      .+...+|+++|.+|||||||+|+|.+..... ...+.+.+..............+.+|||||        ++.+......
T Consensus        20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~   98 (456)
T 4dcu_A           20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI   98 (456)
T ss_dssp             ---CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence            4567899999999999999999999876531 112222232233333444445799999999        7777888888


Q ss_pred             hhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCC
Q 030856           78 YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAG  156 (170)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~  156 (170)
                      ++.++|++|+|+|..++  +.....|+..+...  .+.|+++|+||+|+.....    ...++. ..++ .++++||++|
T Consensus        99 ~~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~~----~~~e~~-~lg~~~~~~iSA~~g  169 (456)
T 4dcu_A           99 AMDEADVIIFMVNGREG--VTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHG  169 (456)
T ss_dssp             HHHHCSEEEEEEESSSC--SCHHHHHHHHHHTT--CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTC
T ss_pred             hHhhCCEEEEEEeCCCC--CChHHHHHHHHHHH--cCCCEEEEEECccchhhhh----hHHHHH-HcCCCceEEeecccc
Confidence            99999999999998753  23333444443332  5799999999999754221    111111 2333 5679999999


Q ss_pred             CChHHHHHHHHhh
Q 030856          157 FNIKGCSPTIRRL  169 (170)
Q Consensus       157 ~~v~~~~~~l~~~  169 (170)
                      .|++++++++.+.
T Consensus       170 ~gv~~L~~~i~~~  182 (456)
T 4dcu_A          170 LGLGDLLDAVAEH  182 (456)
T ss_dssp             TTHHHHHHHHHTT
T ss_pred             cchHHHHHHHHhh
Confidence            9999999998764

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.90  E-value=4.3e-23  Score=152.04  Aligned_cols=152  Identities=18%  Similarity=0.176  Sum_probs=103.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCC--CCC----------ccce---------------------eeeeeeEEEEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF--DNT----------YQAT---------------------IGIDFLSKTMY   52 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~--~~~----------~~~~---------------------~~~~~~~~~~~   52 (170)
                      ....++|+++|.+++|||||+++|++...  ...          ..++                     .+.+.....  
T Consensus        21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~--   98 (434)
T 1zun_B           21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY--   98 (434)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE--
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeE--
Confidence            34569999999999999999999986531  010          0011                     111111111  


Q ss_pred             eCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc
Q 030856           53 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV  132 (170)
Q Consensus        53 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~  132 (170)
                      .......+.+|||||+++|......++..+|++|+|+|++++... ....++..+...  ...|+++|+||+|+.+..+.
T Consensus        99 ~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~  175 (434)
T 1zun_B           99 FSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL--GIKHIVVAINKMDLNGFDER  175 (434)
T ss_dssp             EECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT--TCCEEEEEEECTTTTTSCHH
T ss_pred             eecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc--CCCeEEEEEEcCcCCcccHH
Confidence            222345799999999999988888899999999999999875422 233444333322  12369999999998753211


Q ss_pred             ----CHHHHHHHHHhcC-----CeEEEeecCCCCChHHH
Q 030856          133 ----SIEEGEAKSRELN-----VMFIETSAKAGFNIKGC  162 (170)
Q Consensus       133 ----~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~~  162 (170)
                          ..++.+.+++..+     ++++++||++|.|++++
T Consensus       176 ~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          176 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence                2345666777777     68999999999999873

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.90  E-value=4.1e-24  Score=156.31  Aligned_cols=160  Identities=19%  Similarity=0.163  Sum_probs=111.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcC--------CCCCC-------ccceeeeeeeEEEEEeCCeEEEEEEEecCChhh
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYD--------KFDNT-------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   70 (170)
                      ....++|+++|.+++|||||+++|.+.        .+...       .....+.+.......+......+.+|||||+++
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            456799999999999999999999873        11100       001122222222233333446789999999999


Q ss_pred             hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCccc---CHHHHHHHHHhcC-
Q 030856           71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSRELN-  145 (170)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~~~~~---~~~~~~~~~~~~~-  145 (170)
                      |......++..+|++|+|+|++++... ....++..+..   .++| +++++||+|+......   ..++.++++...+ 
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~  163 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF  163 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence            998888899999999999999876433 33455544443   3678 8899999998642211   1234556666655 


Q ss_pred             ----CeEEEeecCCCCC------------------hHHHHHHHHhh
Q 030856          146 ----VMFIETSAKAGFN------------------IKGCSPTIRRL  169 (170)
Q Consensus       146 ----~~~~~~S~~~~~~------------------v~~~~~~l~~~  169 (170)
                          ++++++||++|.|                  +++++++|.+.
T Consensus       164 ~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~  209 (405)
T 2c78_A          164 PGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEY  209 (405)
T ss_dssp             CTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             cccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhh
Confidence                6899999999987                  78888888764

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.90  E-value=2.9e-23  Score=155.59  Aligned_cols=116  Identities=16%  Similarity=0.129  Sum_probs=83.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCC-----------------CC-----ccceeeeeeeEEEEEeCCeEEEEEEEe
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-----------------NT-----YQATIGIDFLSKTMYLEDRTVRLQLWD   64 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~-----------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D   64 (170)
                      .+..+|+|+|.+|+|||||+++|+.....                 ..     ..+..+.......+...  .+.+.+||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~liD   88 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK--DYLINLLD   88 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET--TEEEEEEC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC--CEEEEEEE
Confidence            35689999999999999999999621110                 00     01112222222333333  46799999


Q ss_pred             cCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856           65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        65 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~  128 (170)
                      |||+.++......++..+|++|+|+|++++.+.+....| ..+.   ..++|+++|+||+|+..
T Consensus        89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~---~~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCR---LRHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHH---TTTCCEEEEEECTTSCC
T ss_pred             CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHH---HcCCCEEEEEeCCCCcc
Confidence            999999999999999999999999999987666665544 2222   24789999999999864

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.90  E-value=8.4e-24  Score=155.82  Aligned_cols=153  Identities=18%  Similarity=0.271  Sum_probs=102.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcC--CCCCCc-----------------------------cceeeeeeeEEEEEeC
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYD--KFDNTY-----------------------------QATIGIDFLSKTMYLE   54 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~   54 (170)
                      ..+.++|+++|.+++|||||+++|++.  .+....                             .+..+.+.....+  .
T Consensus         3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~--~   80 (435)
T 1jny_A            3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF--E   80 (435)
T ss_dssp             -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE--E
T ss_pred             CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEE--e
Confidence            356799999999999999999999864  222110                             1122222222222  2


Q ss_pred             CeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhc----CCCC-eEEEEEeCCCCCCC
Q 030856           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER----GSDV-IIVLVGNKTDLVEK  129 (170)
Q Consensus        55 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~----~~~~-~~vvv~nK~D~~~~  129 (170)
                      .....+.+|||||+++|......++..+|++|+|+|+++ .+|+....|..+...+.    ..+. |+++++||+|+.+.
T Consensus        81 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~  159 (435)
T 1jny_A           81 TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP  159 (435)
T ss_dssp             CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred             cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCc
Confidence            334679999999999999999999999999999999998 56665433222221111    1234 58899999998752


Q ss_pred             c------ccCHHHHHHHHHhcC-----CeEEEeecCCCCChHH
Q 030856          130 R------QVSIEEGEAKSRELN-----VMFIETSAKAGFNIKG  161 (170)
Q Consensus       130 ~------~~~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~  161 (170)
                      .      ....++.+.++...+     ++++++||++|.|+.+
T Consensus       160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e  202 (435)
T 1jny_A          160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  202 (435)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccc
Confidence            1      122355666777665     6899999999999974

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.90  E-value=1.3e-23  Score=148.96  Aligned_cols=114  Identities=21%  Similarity=0.232  Sum_probs=93.3

Q ss_pred             eEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCC----------ChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCC
Q 030856           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA----------SRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKT  124 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~  124 (170)
                      ..+++++||++|++.++..|..|+++++++|||||++          +.+++.....|+..+..... .+.|+++++||+
T Consensus       159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~  238 (340)
T 4fid_A          159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM  238 (340)
T ss_dssp             SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred             eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence            3478999999999999999999999999999999998          67889998888888876543 689999999999


Q ss_pred             CCCCCc---------------ccCHHHHHHHHHh---------------------------cCCeEEEeecCCCCChHHH
Q 030856          125 DLVEKR---------------QVSIEEGEAKSRE---------------------------LNVMFIETSAKAGFNIKGC  162 (170)
Q Consensus       125 D~~~~~---------------~~~~~~~~~~~~~---------------------------~~~~~~~~S~~~~~~v~~~  162 (170)
                      |+..++               ..+.+++.+++..                           .++.++++||+++.||+.+
T Consensus       239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v  318 (340)
T 4fid_A          239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV  318 (340)
T ss_dssp             HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred             hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence            985321               1245666555432                           2368899999999999999


Q ss_pred             HHHHHhh
Q 030856          163 SPTIRRL  169 (170)
Q Consensus       163 ~~~l~~~  169 (170)
                      |+.+.+.
T Consensus       319 F~~v~~~  325 (340)
T 4fid_A          319 FMLAVDV  325 (340)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.90  E-value=2.2e-23  Score=150.38  Aligned_cols=143  Identities=10%  Similarity=0.046  Sum_probs=104.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEe
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   90 (170)
                      +|+++|.+++|||||+++|.        .+..+.+.....+..  ....+.+|||||+++|.......+..+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~--~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDK--EGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECS--SSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEec--CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            99999999999999999998        222222222233333  33469999999999998888888899999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcCCCCeE-EEEEe-CCCCCCCcccC--HHHHHHHHHhcC---CeEEE--eecCC---CCC
Q 030856           91 VASRQSFLNTSKWIDEVRTERGSDVII-VLVGN-KTDLVEKRQVS--IEEGEAKSRELN---VMFIE--TSAKA---GFN  158 (170)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-vvv~n-K~D~~~~~~~~--~~~~~~~~~~~~---~~~~~--~S~~~---~~~  158 (170)
                       ++ ..+.....++..+..   .++|. ++++| |+|+ +.....  .++.++++...+   +++++  +||++   +.|
T Consensus        93 -~~-g~~~qt~e~~~~~~~---~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g  166 (370)
T 2elf_A           93 -PQ-GLDAHTGECIIALDL---LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG  166 (370)
T ss_dssp             -TT-CCCHHHHHHHHHHHH---TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred             -CC-CCcHHHHHHHHHHHH---cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence             53 334444555554443   25666 88889 9998 433222  245566665543   69999  99999   999


Q ss_pred             hHHHHHHHHhh
Q 030856          159 IKGCSPTIRRL  169 (170)
Q Consensus       159 v~~~~~~l~~~  169 (170)
                      ++++++.|.+.
T Consensus       167 i~~L~~~l~~~  177 (370)
T 2elf_A          167 VDELKARINEV  177 (370)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999998764

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.90  E-value=3.1e-23  Score=157.11  Aligned_cols=156  Identities=22%  Similarity=0.226  Sum_probs=104.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCC----ccceeeeeeeEEEE------------EeCCeEEEEEEEecCChhh
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNT----YQATIGIDFLSKTM------------YLEDRTVRLQLWDTAGQER   70 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~----~~~~~~~~~~~~~~------------~~~~~~~~~~i~D~~g~~~   70 (170)
                      .+.++|+++|++++|||||++++.+......    ..++.+..+.....            ..+.....+.+|||||++.
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            4578999999999999999999987543221    11222222211100            0001112589999999999


Q ss_pred             hhhhhhhhhcCCcEEEEEEeCCC---hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC-------------H
Q 030856           71 FRSLIPSYIRDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-------------I  134 (170)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~-------------~  134 (170)
                      |..++..++..+|++|+|+|+++   +++++.+..    +..   .++|+++++||+|+.......             .
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~  155 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI  155 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence            99999989999999999999998   555554432    222   478999999999986432110             0


Q ss_pred             ---H-------HHHHHHHhc---------------CCeEEEeecCCCCChHHHHHHHHhh
Q 030856          135 ---E-------EGEAKSREL---------------NVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       135 ---~-------~~~~~~~~~---------------~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                         +       +........               .++++++||++|.|+++++++|...
T Consensus       156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~  215 (594)
T 1g7s_A          156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGL  215 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhh
Confidence               0       111111111               2389999999999999999998753

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.8e-23  Score=158.16  Aligned_cols=154  Identities=16%  Similarity=0.217  Sum_probs=101.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCc-------------------------------cceeeeeeeEEEEEeCC
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY-------------------------------QATIGIDFLSKTMYLED   55 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~   55 (170)
                      ...++|+++|.+++|||||+++|++....-..                               .+..+.+.....+..  
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~--  242 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST--  242 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC--
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec--
Confidence            45799999999999999999999876321110                               122233333333333  


Q ss_pred             eEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChh---hHHhHHHHHHHHHHhcCCC-CeEEEEEeCCCCCCCcc
Q 030856           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~-~~~vvv~nK~D~~~~~~  131 (170)
                      ...++.||||||++.+......++..+|++|+|+|++++.   ++.....+...+......+ .|+++|+||+|+.+.++
T Consensus       243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~  322 (611)
T 3izq_1          243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ  322 (611)
T ss_dssp             SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred             CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence            3357899999999999999999999999999999998642   1111111111111111223 45999999999876433


Q ss_pred             cCH----HHHHHHHHhc-----CCeEEEeecCCCCChHHH
Q 030856          132 VSI----EEGEAKSREL-----NVMFIETSAKAGFNIKGC  162 (170)
Q Consensus       132 ~~~----~~~~~~~~~~-----~~~~~~~S~~~~~~v~~~  162 (170)
                      ...    ++...+....     +++++++||++|.|++++
T Consensus       323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            222    3333444443     358999999999999864

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.89  E-value=7.1e-25  Score=162.66  Aligned_cols=156  Identities=21%  Similarity=0.194  Sum_probs=107.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .+..+|+++|++++|||||++++.+........+..+.+.....+..++  ..+.+|||||++.|..++...+..+|+++
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            4678999999999999999999987554433333333333332333333  46899999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc--ccCHH--HHHHHHHhcC--CeEEEeecCCCCChH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR--QVSIE--EGEAKSRELN--VMFIETSAKAGFNIK  160 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~--~~~~~--~~~~~~~~~~--~~~~~~S~~~~~~v~  160 (170)
                      +|+|+++....+... .+..+..   .++|+++++||+|+....  .+..+  +...++..++  ++++++||++|.|++
T Consensus        80 LVVda~~g~~~qT~e-~l~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~  155 (501)
T 1zo1_I           80 LVVAADDGVMPQTIE-AIQHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID  155 (501)
T ss_dssp             EEEETTTBSCTTTHH-HHHHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred             EEeecccCccHHHHH-HHHHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence            999998742222222 2222222   478999999999986431  11100  0011122233  699999999999999


Q ss_pred             HHHHHHHh
Q 030856          161 GCSPTIRR  168 (170)
Q Consensus       161 ~~~~~l~~  168 (170)
                      +++++|..
T Consensus       156 eLle~I~~  163 (501)
T 1zo1_I          156 ELLDAILL  163 (501)
T ss_dssp             THHHHTTT
T ss_pred             hhhhhhhh
Confidence            99999864

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.89  E-value=4e-24  Score=158.63  Aligned_cols=155  Identities=17%  Similarity=0.244  Sum_probs=91.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC--CCCC-----------------------------CccceeeeeeeEEEEEeCC
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDN-----------------------------TYQATIGIDFLSKTMYLED   55 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   55 (170)
                      ...++|+++|..++|||||+++|++.  .+..                             +..+..+.+.....+..+ 
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~-  119 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE-  119 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence            45689999999999999999999752  1110                             001111222222223333 


Q ss_pred             eEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCCh---hhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCc-
Q 030856           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR---QSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKR-  130 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~~~-  130 (170)
                       ...+.+|||||++.|.......+..+|++|+|+|+++.   .+|+....+...+......++| +++++||+|+.... 
T Consensus       120 -~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~  198 (467)
T 1r5b_A          120 -HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW  198 (467)
T ss_dssp             -SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred             -CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence             35789999999999999888889999999999999975   2343222222222222224677 99999999985421 


Q ss_pred             -----ccCHHHHHHHHHhc-------CCeEEEeecCCCCChHHHH
Q 030856          131 -----QVSIEEGEAKSREL-------NVMFIETSAKAGFNIKGCS  163 (170)
Q Consensus       131 -----~~~~~~~~~~~~~~-------~~~~~~~S~~~~~~v~~~~  163 (170)
                           ....++...+++..       +++++++||++|.|+++++
T Consensus       199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                 11223456666655       4579999999999998754

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.88  E-value=5.1e-23  Score=144.98  Aligned_cols=159  Identities=18%  Similarity=0.203  Sum_probs=101.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCC------Ccccee----------------------eee-------------
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN------TYQATI----------------------GID-------------   45 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~------~~~~~~----------------------~~~-------------   45 (170)
                      ...++|+++|.+|+|||||+|++++..+.+      ...|+.                      +.+             
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            456899999999999999999999887631      111220                      000             


Q ss_pred             --------eeEEEEEeC-CeEEEEEEEecCChh-------------hhhhhhhhhhcCCcEEE-EEEeCCChhhHHhHHH
Q 030856           46 --------FLSKTMYLE-DRTVRLQLWDTAGQE-------------RFRSLIPSYIRDSSVAV-VVYDVASRQSFLNTSK  102 (170)
Q Consensus        46 --------~~~~~~~~~-~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~~~~~~~~  102 (170)
                              .....+... .....+.+|||||..             .+..+...++..++.++ +|+|+++..+......
T Consensus       104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~  183 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  183 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred             cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence                    000000000 012578999999953             34566777888888766 7999987543333233


Q ss_pred             HHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHh--cC-CeEEEeecCCCCChHHHHHHHHh
Q 030856          103 WIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE--LN-VMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus       103 ~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ++..+.   ..+.|+++|+||+|+.+......+..+.....  .+ .+++++||++|.|+++++++|.+
T Consensus       184 ~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~  249 (299)
T 2aka_B          184 IAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  249 (299)
T ss_dssp             HHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred             HHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence            433332   35789999999999976544322222211111  13 37889999999999999999864

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.88  E-value=1.7e-22  Score=160.17  Aligned_cols=160  Identities=16%  Similarity=0.115  Sum_probs=109.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCC-------C------C-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDK-------F------D-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~-------~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   71 (170)
                      ....++|+++|++++|||||+++|.+..       +      + ....++.+.+.......++.....+.+|||||+++|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            3567999999999999999999998631       0      0 011122222222222233344467999999999999


Q ss_pred             hhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCccc---CHHHHHHHHHhcC--
Q 030856           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSRELN--  145 (170)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~~~~~---~~~~~~~~~~~~~--  145 (170)
                      ......++..+|++|+|+|+++... .....++..+...   ++| +++++||+|+.+..+.   ..++.+.++...+  
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~  448 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP  448 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence            9888889999999999999987533 2334444444432   577 7899999998753221   2245666676665  


Q ss_pred             ---CeEEEeecCCC--------CChHHHHHHHHhh
Q 030856          146 ---VMFIETSAKAG--------FNIKGCSPTIRRL  169 (170)
Q Consensus       146 ---~~~~~~S~~~~--------~~v~~~~~~l~~~  169 (170)
                         ++++++||++|        .|+++++++|.+.
T Consensus       449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~  483 (1289)
T 3avx_A          449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY  483 (1289)
T ss_dssp             TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             ccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence               68999999999        4689999998764

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.88  E-value=4.1e-23  Score=152.91  Aligned_cols=150  Identities=17%  Similarity=0.213  Sum_probs=101.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC--CCCCC-----------------------------ccceeeeeeeEEEEEeCC
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDNT-----------------------------YQATIGIDFLSKTMYLED   55 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   55 (170)
                      ...++|+++|.+++|||||+++|++.  .+...                             ..+..+.+.....+.  .
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~--~   82 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE--T   82 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE--C
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe--c
Confidence            45799999999999999999999864  11110                             011122222222222  3


Q ss_pred             eEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChh---hHH---hHHHHHHHHHHhcCCCCe-EEEEEeCCCCCC
Q 030856           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SFL---NTSKWIDEVRTERGSDVI-IVLVGNKTDLVE  128 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~  128 (170)
                      ....+.+|||||+++|......++..+|++|+|+|+++..   +|+   ....++..+..   .++| +++++||+|+.+
T Consensus        83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~  159 (458)
T 1f60_A           83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVK  159 (458)
T ss_dssp             SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred             CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence            3467999999999999999999999999999999998652   232   22222222222   3565 899999999873


Q ss_pred             Ccc----cCHHHHHHHHHhcC-----CeEEEeecCCCCChHH
Q 030856          129 KRQ----VSIEEGEAKSRELN-----VMFIETSAKAGFNIKG  161 (170)
Q Consensus       129 ~~~----~~~~~~~~~~~~~~-----~~~~~~S~~~~~~v~~  161 (170)
                      ..+    ...++.+.+++..+     ++++++||++|.|+++
T Consensus       160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~  201 (458)
T 1f60_A          160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  201 (458)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence            211    12244556666655     6899999999999874

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.88  E-value=1.1e-21  Score=131.47  Aligned_cols=155  Identities=16%  Similarity=0.210  Sum_probs=99.4

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh----------hhhhh
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSLI   75 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~   75 (170)
                      ..+..+|+++|++|+|||||++++.+..+...+.++.+..........++   .+.+||+||...          +....
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            34568999999999999999999998764333334444333322232323   478999999632          23333


Q ss_pred             hhhh---cCCcEEEEEEeCCChhhHHh--HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc--ccCHHHHHHHHHhcC--C
Q 030856           76 PSYI---RDSSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKR--QVSIEEGEAKSRELN--V  146 (170)
Q Consensus        76 ~~~~---~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~--~~~~~~~~~~~~~~~--~  146 (170)
                      ..++   ..++++++++|++++.+...  +..|+    ..  .+.|+++++||+|+....  +...+.+..++...+  +
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~----~~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~  173 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA----VD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV  173 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH----HH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH----HH--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence            3444   46899999999987654432  22222    11  468999999999986532  222345666666654  4


Q ss_pred             eEEEeecCCCCChHHHHHHHHhh
Q 030856          147 MFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       147 ~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      .++++|++++.++++++++|.+.
T Consensus       174 ~~~~~Sal~~~~~~~l~~~l~~~  196 (210)
T 1pui_A          174 QVETFSSLKKQGVDKLRQKLDTW  196 (210)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHH
T ss_pred             ceEEEeecCCCCHHHHHHHHHHH
Confidence            88999999999999999998764

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.87  E-value=2.4e-23  Score=158.10  Aligned_cols=159  Identities=21%  Similarity=0.232  Sum_probs=89.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCccceeeeeeeEEEEEeC
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF-------------------------------DNTYQATIGIDFLSKTMYLE   54 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   54 (170)
                      ....++|+++|.+++|||||+++|++...                               ..+..+..+.+.....+.  
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~--  251 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE--  251 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEE--
Confidence            44678999999999999999999964210                               001122223232222222  


Q ss_pred             CeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChh---hH---HhHHHHHHHHHHhcCCCCe-EEEEEeCCCCC
Q 030856           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SF---LNTSKWIDEVRTERGSDVI-IVLVGNKTDLV  127 (170)
Q Consensus        55 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~  127 (170)
                      .....+.||||||+..|.......+..+|++|+|+|++++.   ++   ......+..+. .  .++| +++|+||+|+.
T Consensus       252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~-~--lgip~iIvviNKiDl~  328 (592)
T 3mca_A          252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLR-A--LGISEIVVSVNKLDLM  328 (592)
T ss_dssp             -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHH-H--SSCCCEEEEEECGGGG
T ss_pred             eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHH-H--cCCCeEEEEEeccccc
Confidence            23467899999999999888888899999999999998642   22   11122222222 2  2565 89999999986


Q ss_pred             CCcccC----HHHHHHHH-HhcCC-----eEEEeecCCCCChH--------------HHHHHHHhh
Q 030856          128 EKRQVS----IEEGEAKS-RELNV-----MFIETSAKAGFNIK--------------GCSPTIRRL  169 (170)
Q Consensus       128 ~~~~~~----~~~~~~~~-~~~~~-----~~~~~S~~~~~~v~--------------~~~~~l~~~  169 (170)
                      ......    ..+...+. ...++     +++++||++|.|++              .|++.|.+.
T Consensus       329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~  394 (592)
T 3mca_A          329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQL  394 (592)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTS
T ss_pred             cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhh
Confidence            532211    23344444 44454     79999999999998              788887653

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.87  E-value=1.7e-21  Score=149.84  Aligned_cols=123  Identities=16%  Similarity=0.145  Sum_probs=81.8

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCC-------------ccc---eeeeeeeEEEEEeCCeEEEEEEEe
Q 030856            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-------------YQA---TIGIDFLSKTMYLEDRTVRLQLWD   64 (170)
Q Consensus         1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~-------------~~~---~~~~~~~~~~~~~~~~~~~~~i~D   64 (170)
                      |......+..+|+++|+.|+|||||++++.+......             +.+   ..+..+...........+.+.+||
T Consensus         1 ~~s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD   80 (665)
T 2dy1_A            1 MGTEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD   80 (665)
T ss_dssp             -----CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE
T ss_pred             CCCCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe
Confidence            4444456678999999999999999999984322100             000   011122222222222346899999


Q ss_pred             cCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856           65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        65 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~  127 (170)
                      |||+.++......++..+|++++++|+++...... ..++..+..   .++|+++|+||+|+.
T Consensus        81 TpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           81 APGYGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             CCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred             CCCccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence            99999999999999999999999999886543333 233344433   378999999999986

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.87  E-value=4.1e-21  Score=132.95  Aligned_cols=123  Identities=12%  Similarity=0.149  Sum_probs=86.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhc-----
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR-----   80 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-----   80 (170)
                      .+.++|+++|.+|+|||||++++++.... ....+..+..........++  ..+.+|||||..++......+++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            46899999999999999999999987752 22223333333344444444  47999999998876655444443     


Q ss_pred             ----CCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCC--CeEEEEEeCCCCCCCccc
Q 030856           81 ----DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSD--VIIVLVGNKTDLVEKRQV  132 (170)
Q Consensus        81 ----~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~--~~~vvv~nK~D~~~~~~~  132 (170)
                          ++|++++|+++++.. +... ..|+..+....+.+  .|+++|+||+|+...+..
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~  169 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDEL  169 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTC
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCc
Confidence                789999999987654 4333 46777777665543  489999999998644443

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.85  E-value=1.1e-20  Score=145.86  Aligned_cols=159  Identities=12%  Similarity=0.180  Sum_probs=104.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceee--------------eee--------------------------
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIG--------------IDF--------------------------   46 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~--------------~~~--------------------------   46 (170)
                      ..++|+++|.+|+|||||+|+|++.... ....|++.              ..+                          
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            4689999999999999999999987642 22233221              000                          


Q ss_pred             -------------eEEEEEeCCeE--EEEEEEecCChhh---hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHH
Q 030856           47 -------------LSKTMYLEDRT--VRLQLWDTAGQER---FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVR  108 (170)
Q Consensus        47 -------------~~~~~~~~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~  108 (170)
                                   ....+..+...  ..+.+|||||...   .......++.++|++++|+|++++.+......|...+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~  227 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK  227 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence                         00000011000  2589999999665   34556678899999999999998777666655543332


Q ss_pred             HhcCCCCeEEEEEeCCCCCCCcccCHH----------HHH-----HHHHh--------cCCeEEEeecC-----------
Q 030856          109 TERGSDVIIVLVGNKTDLVEKRQVSIE----------EGE-----AKSRE--------LNVMFIETSAK-----------  154 (170)
Q Consensus       109 ~~~~~~~~~vvv~nK~D~~~~~~~~~~----------~~~-----~~~~~--------~~~~~~~~S~~-----------  154 (170)
                      .   .+.|+++|+||+|+......+.+          ...     .+...        .+.++++|||+           
T Consensus       228 ~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~  304 (695)
T 2j69_A          228 G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ  304 (695)
T ss_dssp             T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred             h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence            2   36789999999998654311110          111     11111        12479999999           


Q ss_pred             ---CCCChHHHHHHHHhh
Q 030856          155 ---AGFNIKGCSPTIRRL  169 (170)
Q Consensus       155 ---~~~~v~~~~~~l~~~  169 (170)
                         ++.|+++++++|.+.
T Consensus       305 ~~~~~~Gi~~L~~~L~~~  322 (695)
T 2j69_A          305 ADLDGTGFPKFMDSLNTF  322 (695)
T ss_dssp             CCCTTSSHHHHHHHHHHH
T ss_pred             hhhhccCHHHHHHHHHHH
Confidence               999999999998763

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.85  E-value=4.3e-22  Score=140.18  Aligned_cols=157  Identities=17%  Similarity=0.224  Sum_probs=84.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC-CCCCCcc--------ceeeeeeeEEEEEeCCeEEEEEEEecCCh-------hhh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD-KFDNTYQ--------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-------ERF   71 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~~   71 (170)
                      ..++|+++|++|+|||||++++.+. ..+....        ++.............+....+++||++|.       +.+
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~   96 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF   96 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence            4689999999999999999998875 4333221        12111111222222344568999999997       444


Q ss_pred             hhhhh-------hhhcC-------------CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc
Q 030856           72 RSLIP-------SYIRD-------------SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        72 ~~~~~-------~~~~~-------------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~  131 (170)
                      .....       .++..             +++++++.+.+. .+++....  ..+... ..+.++++|+||+|+...++
T Consensus        97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l-~~~~~iilV~~K~Dl~~~~e  172 (301)
T 2qnr_A           97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAI-HNKVNIVPVIAKADTLTLKE  172 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHH-TTTSCEEEEECCGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHH-HhcCCEEEEEEeCCCCCHHH
Confidence            44443       33332             344555555432 12333321  222222 34689999999999876444


Q ss_pred             c--CHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          132 V--SIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       132 ~--~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      +  ..+++.+++..++++++++||+++ +++++|.++.+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~  211 (301)
T 2qnr_A          173 RERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRL  211 (301)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHH
Confidence            3  346778889999999999999999 999999888764

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.85  E-value=1.2e-20  Score=137.45  Aligned_cols=154  Identities=17%  Similarity=0.160  Sum_probs=104.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh----hhhhhhh---hhcCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPS---YIRDS   82 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~---~~~~~   82 (170)
                      .|+++|++|+|||||++++.+.... ..+ +..+.......+..++ ...+.+||+||..+    ...+...   .+..+
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~-~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era  236 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPY-PFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART  236 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCC-TTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCc-ccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence            4799999999999999999976432 111 1111111122222332 24689999999632    2222222   24579


Q ss_pred             cEEEEEEeCCChhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 030856           83 SVAVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        83 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~  160 (170)
                      +.++.++|++ ...+..+..+..++.....  ...|.++|+||+|+...  ...++..+.....+++++.+||++++|++
T Consensus       237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~  313 (416)
T 1udx_A          237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLP  313 (416)
T ss_dssp             SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence            9999999998 5567777666666554421  25788999999998653  23344555566668899999999999999


Q ss_pred             HHHHHHHhh
Q 030856          161 GCSPTIRRL  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      +++++|.+.
T Consensus       314 eL~~~i~~~  322 (416)
T 1udx_A          314 ALKEALHAL  322 (416)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999875

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.85  E-value=3.7e-20  Score=138.98  Aligned_cols=118  Identities=19%  Similarity=0.197  Sum_probs=78.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCC--------------------ccceeeeeeeEEEEEeCCeEEEEEEEecC
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNT--------------------YQATIGIDFLSKTMYLEDRTVRLQLWDTA   66 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   66 (170)
                      .+.++|+++|++|+|||||+++|+.......                    ..+..+.+.......+....+.+.+||||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP   90 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence            4579999999999999999999986321000                    00111111111112222234689999999


Q ss_pred             ChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856           67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        67 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~  128 (170)
                      |+.++......++..+|++|+|+|+++...... ..++..+   ...++|+++|+||+|+..
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~---~~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVT---RLRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHH---TTTTCCEEEEEECTTSCC
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHH---HHcCCCEEEEEcCcCCcc
Confidence            999999888889999999999999987533222 2222222   225789999999999864

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.85  E-value=1.5e-20  Score=145.13  Aligned_cols=117  Identities=20%  Similarity=0.249  Sum_probs=82.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCC--C------CC-----C-----ccceeeeeeeEEEEEeCCeEEEEEEEecCC
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDK--F------DN-----T-----YQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~--~------~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   67 (170)
                      ..+..+|+++|.+|+|||||+++|+...  .      ..     .     ..+..+.......+...  .+.+.+|||||
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~--~~~i~liDTPG   86 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--DHRINIIDTPG   86 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET--TEEEEEECCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC--CeEEEEEECcC
Confidence            3567999999999999999999998421  1      00     0     01111111222222233  36799999999


Q ss_pred             hhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856           68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~  128 (170)
                      +.++......++..+|++|+|+|+++..+.+....|.. +..   .++|+++|+||+|+..
T Consensus        87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            99999999999999999999999998777776665543 332   3799999999999864

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.84  E-value=1.8e-21  Score=140.42  Aligned_cols=105  Identities=21%  Similarity=0.210  Sum_probs=76.5

Q ss_pred             EEEEEecCChhhh-------------hhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 030856           59 RLQLWDTAGQERF-------------RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD  125 (170)
Q Consensus        59 ~~~i~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D  125 (170)
                      .+.+|||||...+             ..+...++.++|++|++++.++.+...  ..|+..+......+.|+++|+||+|
T Consensus       137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~D  214 (360)
T 3t34_A          137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKID  214 (360)
T ss_dssp             SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred             CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCCc
Confidence            5899999997665             567788899999999999876543222  3334444444445789999999999


Q ss_pred             CCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856          126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      +........+.++.+....+.+|+++|++++.++++.+..
T Consensus       215 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          215 LMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             GCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred             cCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence            9876655555555556667789999999998887765433

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.84  E-value=2.8e-20  Score=131.92  Aligned_cols=108  Identities=20%  Similarity=0.213  Sum_probs=67.2

Q ss_pred             EEEEEEecCChhh-------------hhhhhhhhhcCCcEEEEEEeCCChhhH-HhHHHHHHHHHHhcCCCCeEEEEEeC
Q 030856           58 VRLQLWDTAGQER-------------FRSLIPSYIRDSSVAVVVYDVASRQSF-LNTSKWIDEVRTERGSDVIIVLVGNK  123 (170)
Q Consensus        58 ~~~~i~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvv~nK  123 (170)
                      ..+.+|||||...             +......++..+|++++|+|.++.... .....++..+   ...+.|+++|+||
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK  207 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK  207 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence            4689999999643             455677788999999999997543211 1111222222   2257899999999


Q ss_pred             CCCCCCcccCHHHHHHHHHhcCCeEEEeecC---C---CCChHHHHHHHHh
Q 030856          124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAK---A---GFNIKGCSPTIRR  168 (170)
Q Consensus       124 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~---~---~~~v~~~~~~l~~  168 (170)
                      +|+........+.++......+..++++|+.   +   +.|++++++.+.+
T Consensus       208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~  258 (315)
T 1jwy_B          208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEIL  258 (315)
T ss_dssp             TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHH
T ss_pred             cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHH
Confidence            9987654422232221111222566666554   4   7888888888764

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.84  E-value=1.7e-21  Score=141.55  Aligned_cols=85  Identities=18%  Similarity=0.202  Sum_probs=47.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEE--E-------------------EeCC-eEEEEEEEecCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKT--M-------------------YLED-RTVRLQLWDTAG   67 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~-~~~~~~i~D~~g   67 (170)
                      ++|+++|.+|+|||||+|++++........|..+.+.....  .                   .+++ ...++.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999987643222222221111111  1                   1122 246899999999


Q ss_pred             hhh----hhhhhh---hhhcCCcEEEEEEeCCCh
Q 030856           68 QER----FRSLIP---SYIRDSSVAVVVYDVASR   94 (170)
Q Consensus        68 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~   94 (170)
                      ...    ...+..   .+++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            753    222222   346889999999999875

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.83  E-value=1e-19  Score=126.42  Aligned_cols=122  Identities=12%  Similarity=0.098  Sum_probs=81.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhh-------hh
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP-------SY   78 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~~   78 (170)
                      ...++|+++|.+|+|||||+|++++.... ....+..+.+.........  ...+.+|||||..++.....       .+
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--CeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            35799999999999999999999987653 1212222222222233333  36799999999866543222       12


Q ss_pred             --hcCCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCC--CeEEEEEeCCCCCCCcc
Q 030856           79 --IRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSD--VIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        79 --~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~--~~~vvv~nK~D~~~~~~  131 (170)
                        ..++|++++|+|++.. ++... ..|+..+....+.+  .|+++|+||+|+...+.
T Consensus       115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~  171 (270)
T 1h65_A          115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG  171 (270)
T ss_dssp             TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG
T ss_pred             hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCC
Confidence              2379999999998653 34332 46777776655433  69999999999875543

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.83  E-value=1.4e-20  Score=137.26  Aligned_cols=157  Identities=13%  Similarity=0.192  Sum_probs=81.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCc-------cceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh-------
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTY-------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------   72 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------   72 (170)
                      -.++|+++|++|+|||||++.+.+...+ ...       .++.............+....+++||++|.....       
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~  109 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ  109 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence            4678999999999999999999987653 111       1122212212222223334578999999976431       


Q ss_pred             hh------------------hhhhhcCCcE--EEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCcc
Q 030856           73 SL------------------IPSYIRDSSV--AVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        73 ~~------------------~~~~~~~~d~--~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~  131 (170)
                      ..                  .+.++..+++  ++|+.+.+. .+++... .|+..+.    .++|+++|+||+|+...++
T Consensus       110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~e  184 (418)
T 2qag_C          110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEE  184 (418)
T ss_dssp             HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHH
Confidence            11                  1223344444  444444321 2344433 4555543    4799999999999876655


Q ss_pred             cCH--HHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          132 VSI--EEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       132 ~~~--~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      +..  +++...+..++++++++|+.++.+++++|..+.+.
T Consensus       185 v~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~  224 (418)
T 2qag_C          185 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  224 (418)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred             HHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence            544  67788888899999999999999999988877654

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.83  E-value=5.8e-19  Score=136.50  Aligned_cols=120  Identities=18%  Similarity=0.213  Sum_probs=83.5

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCC--CCC-----------Cc-----cceeeeeeeEEEEEeC-----CeEEEEE
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDK--FDN-----------TY-----QATIGIDFLSKTMYLE-----DRTVRLQ   61 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~--~~~-----------~~-----~~~~~~~~~~~~~~~~-----~~~~~~~   61 (170)
                      ...+..+|+++|..|+|||||+++|+...  ...           .+     ....+.......+.+.     +..+.+.
T Consensus         6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~   85 (704)
T 2rdo_7            6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN   85 (704)
T ss_pred             CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence            34567899999999999999999997531  110           00     1111122222222222     2347899


Q ss_pred             EEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856           62 LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        62 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~  128 (170)
                      +|||||+.++......++..+|++|+|+|+++....+....|. ...   ..++|+++|+||+|+..
T Consensus        86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~---~~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QAN---KYKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHH---HcCCCEEEEEeCCCccc
Confidence            9999999999999999999999999999999875555544442 222   24789999999999864

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.83  E-value=2e-21  Score=136.91  Aligned_cols=134  Identities=17%  Similarity=0.148  Sum_probs=109.0

Q ss_pred             HHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChh-hHHhHH
Q 030856           24 SIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ-SFLNTS  101 (170)
Q Consensus        24 tll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~  101 (170)
                      +|+.++..+.+. ..+.||.+..+. .....++   ++.+||+  ++.++.+++.++.++|++|+|||+++++ +++.+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            677788877777 788899884443 3322222   6899999  8889999999999999999999999987 688889


Q ss_pred             HHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC--CeEEEeecCCCCChHHHHHHHHh
Q 030856          102 KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus       102 ~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      .|+..+..   .++|+++|+||+|+.+.+.+  +++++++..++  +++++|||++|.|++++|..+..
T Consensus       106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            99887754   47999999999998654433  45677777777  89999999999999999998754

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.82  E-value=5.7e-19  Score=136.42  Aligned_cols=118  Identities=23%  Similarity=0.267  Sum_probs=83.5

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcC--CCCC-----------Cc-----cceeeeeeeEEEEEeCCeEEEEEEEecC
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYD--KFDN-----------TY-----QATIGIDFLSKTMYLEDRTVRLQLWDTA   66 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~--~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~~~~~i~D~~   66 (170)
                      +..+..+|+++|.+|+|||||+++|+..  ....           .+     .+..+...........  ...+.+||||
T Consensus         6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTP   83 (693)
T 2xex_A            6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTP   83 (693)
T ss_dssp             CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCC
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECc
Confidence            4466799999999999999999999852  2110           00     0111111112223333  3679999999


Q ss_pred             ChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856           67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        67 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~  128 (170)
                      |+.++......++..+|++|+|+|+++..+.+....|.. +..   .++|+++|+||+|+..
T Consensus        84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            999998889999999999999999998766666555533 333   3789999999999864

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.82  E-value=6.6e-20  Score=132.73  Aligned_cols=118  Identities=17%  Similarity=0.190  Sum_probs=96.1

Q ss_pred             EEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCC----------hhhHHhHHHHHHHHHHhc-CCCCeEE
Q 030856           50 TMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS----------RQSFLNTSKWIDEVRTER-GSDVIIV  118 (170)
Q Consensus        50 ~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~v  118 (170)
                      .+.+++  +.+.+|||+|++.++..+..++++++++|||||+++          ..+|+....|+..+.... .+++|++
T Consensus       211 ~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pii  288 (402)
T 1azs_C          211 KFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI  288 (402)
T ss_dssp             EEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEE
T ss_pred             EeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEE
Confidence            344444  789999999999999999999999999999999998          889999999999987653 3689999


Q ss_pred             EEEeCCCCCCCcc---c---------------------------CHHHHHHHH-----Hh--------cCCeEEEeecCC
Q 030856          119 LVGNKTDLVEKRQ---V---------------------------SIEEGEAKS-----RE--------LNVMFIETSAKA  155 (170)
Q Consensus       119 vv~nK~D~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~S~~~  155 (170)
                      ||+||+|+..++.   +                           ..+++..++     ..        .++.+++|||++
T Consensus       289 LvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d  368 (402)
T 1azs_C          289 LFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVD  368 (402)
T ss_dssp             EEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTC
T ss_pred             EEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeec
Confidence            9999999854322   1                           135566653     22        246788999999


Q ss_pred             CCChHHHHHHHHhh
Q 030856          156 GFNIKGCSPTIRRL  169 (170)
Q Consensus       156 ~~~v~~~~~~l~~~  169 (170)
                      +.||+++|+++.+.
T Consensus       369 ~~nV~~vF~~v~~~  382 (402)
T 1azs_C          369 TENIRRVFNDCRDI  382 (402)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHH
Confidence            99999999998764

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.80  E-value=1.5e-20  Score=135.19  Aligned_cols=159  Identities=16%  Similarity=0.176  Sum_probs=94.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCC-C-----ccceee----------------------ee-------------
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN-T-----YQATIG----------------------ID-------------   45 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~-~-----~~~~~~----------------------~~-------------   45 (170)
                      ....+|+++|.+|+|||||+|+|.+..+.+ .     ..|+..                      .+             
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            456799999999999999999999887631 1     112200                      00             


Q ss_pred             --------eeEEEEEeC-CeEEEEEEEecCChh-------------hhhhhhhhhhcCCcE-EEEEEeCCChhhHHhHHH
Q 030856           46 --------FLSKTMYLE-DRTVRLQLWDTAGQE-------------RFRSLIPSYIRDSSV-AVVVYDVASRQSFLNTSK  102 (170)
Q Consensus        46 --------~~~~~~~~~-~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~-~i~v~d~~~~~~~~~~~~  102 (170)
                              .......+. .....+.+|||||..             .+..+...|+.+++. ++++.+++..  +... .
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~--~~~~-~  185 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD--LANS-D  185 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC--GGGC-H
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc--cchh-H
Confidence                    000000000 012468999999953             345566777766654 4445665532  2221 1


Q ss_pred             HHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHH--HHHhcCC-eEEEeecCCCCChHHHHHHHHh
Q 030856          103 WIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEA--KSRELNV-MFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus       103 ~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~--~~~~~~~-~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      +...+......+.|+++|+||+|+.+......+..+.  +....+. +++++||+++.|++++++++.+
T Consensus       186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            2222333334578999999999987544322221111  1111232 6788999999999999998864

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.79  E-value=1.2e-17  Score=119.52  Aligned_cols=145  Identities=12%  Similarity=0.088  Sum_probs=89.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCe---------------EEEEEEEecCChhhhh--
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFR--   72 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~--   72 (170)
                      ++|+++|.+|+|||||+|++.+........|..+.+.....+.+++.               ...+.+||+||.....  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            68999999999999999999987643222222222222222333332               1479999999976542  


Q ss_pred             --hh---hhhhhcCCcEEEEEEeCCCh----------hhHHhHHHHHHHH------------------------------
Q 030856           73 --SL---IPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEV------------------------------  107 (170)
Q Consensus        73 --~~---~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~------------------------------  107 (170)
                        .+   ...+++++|++++|+|+++.          ++++.+..+..++                              
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~  162 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL  162 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence              22   23357899999999999852          2233322111111                              


Q ss_pred             ----------H-------------------Hh-cCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecC
Q 030856          108 ----------R-------------------TE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK  154 (170)
Q Consensus       108 ----------~-------------------~~-~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  154 (170)
                                .                   .. .....|+++++|+.|..-......+..+.++...+.+++++||+
T Consensus       163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~  239 (363)
T 1jal_A          163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA  239 (363)
T ss_dssp             HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence                      0                   00 01248999999999854222334577788888889999999965

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.78  E-value=2.9e-19  Score=120.64  Aligned_cols=151  Identities=18%  Similarity=0.166  Sum_probs=94.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeee--------------EEEEEe----------------CCeE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFL--------------SKTMYL----------------EDRT   57 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~--------------~~~~~~----------------~~~~   57 (170)
                      +..+|+++|.+|+|||||++++...............+..              ......                ....
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            4578999999999999999999865321111111111110              001101                1123


Q ss_pred             EEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHH
Q 030856           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG  137 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~  137 (170)
                      ..+.+|||+|.....   ..+....+.+++|+|+++...  ....+...      .+.|+++|+||+|+...+....++.
T Consensus       109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~  177 (221)
T 2wsm_A          109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI------FRVADLIVINKVALAEAVGADVEKM  177 (221)
T ss_dssp             CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH------HHTCSEEEEECGGGHHHHTCCHHHH
T ss_pred             CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh------hhcCCEEEEecccCCcchhhHHHHH
Confidence            468899999851111   111135788999999876432  11111111      1477899999999865433455666


Q ss_pred             HHHHHhc--CCeEEEeecCCCCChHHHHHHHHhh
Q 030856          138 EAKSREL--NVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       138 ~~~~~~~--~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      ...++..  +++++++||++|.|+++++++|.+.
T Consensus       178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~  211 (221)
T 2wsm_A          178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGI  211 (221)
T ss_dssp             HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHH
Confidence            6666654  4699999999999999999999864

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.77  E-value=2.3e-17  Score=124.41  Aligned_cols=116  Identities=16%  Similarity=0.137  Sum_probs=82.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCC----------------------CCCccceeeeeeeEEEEEeCCeEEEEEEEe
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF----------------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWD   64 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D   64 (170)
                      .+..||+|+|..++|||||..+|+...-                      +.+..+..++......+.+  ..+++.++|
T Consensus        29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~--~~~~iNlID  106 (548)
T 3vqt_A           29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY--RDRVVNLLD  106 (548)
T ss_dssp             HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE--TTEEEEEEC
T ss_pred             cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE--CCEEEEEEe
Confidence            3578999999999999999999973210                      0111222222222333334  347899999


Q ss_pred             cCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856           65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        65 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~  128 (170)
                      |||+.+|.......+.-+|++|+|+|+...-.-+....|. ....   .++|.++++||+|+..
T Consensus       107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~-~a~~---~~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMD-VCRM---RATPVMTFVNKMDREA  166 (548)
T ss_dssp             CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHH-HHHH---TTCCEEEEEECTTSCC
T ss_pred             CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHH-HHHH---hCCceEEEEecccchh
Confidence            9999999999999999999999999999765555555553 3333   4799999999999854

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.77  E-value=8.2e-21  Score=128.66  Aligned_cols=151  Identities=18%  Similarity=0.200  Sum_probs=90.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeee------------EEEEEeC-CeE-----------------
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFL------------SKTMYLE-DRT-----------------   57 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~-----------------   57 (170)
                      +.++|+++|.+|||||||++++....+...+.++...++.            ......+ +..                 
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4689999999999999999999987554444455444432            1111111 110                 


Q ss_pred             --EEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHH
Q 030856           58 --VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE  135 (170)
Q Consensus        58 --~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~  135 (170)
                        ..+.++|++|.-...   ..+-...+..+.+.|..+......  .....      .+.|.++|+||+|+.+.+....+
T Consensus       117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~  185 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI------MKTADLIVINKIDLADAVGADIK  185 (226)
T ss_dssp             GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH------HTTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH------hhcCCEEEEeccccCchhHHHHH
Confidence              134555555521100   011112344556666432111100  00001      13677999999998654445667


Q ss_pred             HHHHHHHhc--CCeEEEeecCCCCChHHHHHHHHhh
Q 030856          136 EGEAKSREL--NVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       136 ~~~~~~~~~--~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      +...+++..  +++++++||++|.|++++|++|.+.
T Consensus       186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  221 (226)
T 2hf9_A          186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKS  221 (226)
T ss_dssp             HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHH
Confidence            777777754  5799999999999999999999864

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.77  E-value=4e-19  Score=127.83  Aligned_cols=101  Identities=17%  Similarity=0.078  Sum_probs=67.7

Q ss_pred             EEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC--HH
Q 030856           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IE  135 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~--~~  135 (170)
                      +.+.||||||...   .....+..+|++++|+|....+.++.+...        -.+.|+++|+||+|+.......  ..
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~--------~~~~p~ivVlNK~Dl~~~~~~~~~~~  240 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG--------VLELADIVVVNKADGEHHKEARLAAR  240 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT--------SGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh--------HhhcCCEEEEECCCCcChhHHHHHHH
Confidence            5789999999432   233445889999999998765444333211        1246889999999985432221  11


Q ss_pred             HHHHHHH-------hcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          136 EGEAKSR-------ELNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       136 ~~~~~~~-------~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      +......       .++.+++++||++|.|+++++++|.+.
T Consensus       241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~  281 (355)
T 3p32_A          241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERH  281 (355)
T ss_dssp             HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHH
T ss_pred             HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHH
Confidence            1111111       125789999999999999999999764

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.73  E-value=3.8e-18  Score=128.72  Aligned_cols=123  Identities=20%  Similarity=0.189  Sum_probs=82.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCC---CCccceeeeeeeEEE-----EEeC-----------------------
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSKT-----MYLE-----------------------   54 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~---~~~~~~~~~~~~~~~-----~~~~-----------------------   54 (170)
                      ....++|+++|.+|+|||||+|+|++....   ....+++........     ...+                       
T Consensus        62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~  141 (550)
T 2qpt_A           62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN  141 (550)
T ss_dssp             TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence            346789999999999999999999998763   222332211000000     0000                       


Q ss_pred             CeE---------EEEEEEecCChhh-----------hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCC
Q 030856           55 DRT---------VRLQLWDTAGQER-----------FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD  114 (170)
Q Consensus        55 ~~~---------~~~~i~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  114 (170)
                      +..         ..+.+|||||...           +......++..+|++++|+|+++....+....++..+..   .+
T Consensus       142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~  218 (550)
T 2qpt_A          142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HE  218 (550)
T ss_dssp             TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CG
T ss_pred             cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cC
Confidence            000         2589999999764           445667788999999999999875444555556555432   35


Q ss_pred             CeEEEEEeCCCCCCCcc
Q 030856          115 VIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus       115 ~~~vvv~nK~D~~~~~~  131 (170)
                      .|+++|+||+|+....+
T Consensus       219 ~pvilVlNK~Dl~~~~e  235 (550)
T 2qpt_A          219 DKIRVVLNKADMVETQQ  235 (550)
T ss_dssp             GGEEEEEECGGGSCHHH
T ss_pred             CCEEEEEECCCccCHHH
Confidence            88999999999875433

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.73  E-value=1.4e-17  Score=131.03  Aligned_cols=117  Identities=18%  Similarity=0.195  Sum_probs=84.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCC------------CC----Cccc--eeeeeeeEEEEE------------eCCe
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF------------DN----TYQA--TIGIDFLSKTMY------------LEDR   56 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~------------~~----~~~~--~~~~~~~~~~~~------------~~~~   56 (170)
                      .+..||+++|+.++|||||+++|+....            .+    +..+  |.........+.            .++.
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            4568999999999999999999986411            00    0111  111111111222            2344


Q ss_pred             EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~  127 (170)
                      .+.+.+|||||+.+|...+..+++.+|++|+|+|++++.+++....|....    ..++|+++|+||+|+.
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~----~~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL----GERIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH----HTTCEEEEEEECHHHH
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH----HcCCCeEEEEECCCcc
Confidence            789999999999999999999999999999999999987777766554332    2478999999999985

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.72  E-value=1.4e-16  Score=114.60  Aligned_cols=146  Identities=16%  Similarity=0.139  Sum_probs=88.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccc--eeeeeeeEEEEEeCC-------------------eEEEEEEEecCCh
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQA--TIGIDFLSKTMYLED-------------------RTVRLQLWDTAGQ   68 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~   68 (170)
                      ++|+++|.+|+|||||+|++.+........+  |...+....  .+++                   ....+.+||+||.
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~--~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV--PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE--ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE--ecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            6899999999999999999997643211111  111111111  1111                   2357999999997


Q ss_pred             hhhh----hh---hhhhhcCCcEEEEEEeCCCh----------hhHHhHHHH---H------------H-----------
Q 030856           69 ERFR----SL---IPSYIRDSSVAVVVYDVASR----------QSFLNTSKW---I------------D-----------  105 (170)
Q Consensus        69 ~~~~----~~---~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~---~------------~-----------  105 (170)
                      ....    .+   ....++.+|++++|+|+++.          +.+..+..+   +            .           
T Consensus        80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~  159 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRE  159 (368)
T ss_dssp             CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred             cccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchh
Confidence            6532    12   23357899999999999851          122211110   0            0           


Q ss_pred             ---------HHHHh--c----------------------CCCCeEEEEEeCCCCC--CC-cccCHHHHHHHHHhcCCeEE
Q 030856          106 ---------EVRTE--R----------------------GSDVIIVLVGNKTDLV--EK-RQVSIEEGEAKSRELNVMFI  149 (170)
Q Consensus       106 ---------~~~~~--~----------------------~~~~~~vvv~nK~D~~--~~-~~~~~~~~~~~~~~~~~~~~  149 (170)
                               .+...  .                      -...|+++++||.|..  +. .....+..+.+++..+.+++
T Consensus       160 ~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv  239 (368)
T 2dby_A          160 RLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVV  239 (368)
T ss_dssp             GHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEE
Confidence                     00000  0                      0137999999999842  21 13446778888888899999


Q ss_pred             EeecCCCC
Q 030856          150 ETSAKAGF  157 (170)
Q Consensus       150 ~~S~~~~~  157 (170)
                      ++||+...
T Consensus       240 ~iSAk~E~  247 (368)
T 2dby_A          240 VVSARLEA  247 (368)
T ss_dssp             EECHHHHH
T ss_pred             EeechhHH
Confidence            99987643

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.71  E-value=3.7e-18  Score=122.43  Aligned_cols=100  Identities=12%  Similarity=0.048  Sum_probs=60.8

Q ss_pred             EEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHH
Q 030856           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG  137 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~  137 (170)
                      +.+.++||+|....   .......+|++++|+|.+++...+.+..   .+     ...|.++|+||+|+.+..... ...
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~~-~~~  234 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPAR-RIQ  234 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHHH-HHH
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhHH-HHH
Confidence            46899999995421   2344678999999999986543222211   11     246788999999985321110 111


Q ss_pred             HHHHH----------hcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          138 EAKSR----------ELNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       138 ~~~~~----------~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      ..+..          ..+.+++.+||++|.|+++++++|.+.
T Consensus       235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~  276 (349)
T 2www_A          235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDF  276 (349)
T ss_dssp             HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHH
Confidence            12211          124578999999999999999999764

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.70  E-value=1e-16  Score=110.76  Aligned_cols=109  Identities=16%  Similarity=0.014  Sum_probs=66.4

Q ss_pred             EEEEEEecCChhhhhhhhh------hhhcCCcEEEEEEeCCChhhHHhHHHHHH-HHHHhcCCCCeEEEEEeCCCCCCCc
Q 030856           58 VRLQLWDTAGQERFRSLIP------SYIRDSSVAVVVYDVASRQSFLNTSKWID-EVRTERGSDVIIVLVGNKTDLVEKR  130 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~vvv~nK~D~~~~~  130 (170)
                      +.+.+|||||..+......      ..+.. +++++++|............... ........+.|+++|+||+|+....
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            4789999999876543321      23455 88888988754222222111111 1111111368999999999986533


Q ss_pred             ccCHHHHHH----------------------------HHHhcC--CeEEEeecCCCCChHHHHHHHHhh
Q 030856          131 QVSIEEGEA----------------------------KSRELN--VMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       131 ~~~~~~~~~----------------------------~~~~~~--~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      +.  ++..+                            ++..++  ++++++||++++|+++++++|.+.
T Consensus       188 ~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~  254 (262)
T 1yrb_A          188 EK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  254 (262)
T ss_dssp             HH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             cH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHH
Confidence            21  11111                            123333  489999999999999999999864

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.69  E-value=9.7e-16  Score=110.22  Aligned_cols=154  Identities=12%  Similarity=0.097  Sum_probs=99.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh-------hhhhhhhhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRD   81 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~   81 (170)
                      ..+|+++|.||+|||||+|+|++........|..+.+.....+.+++  .+++++||||..+-       .......++.
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~  149 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART  149 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence            46899999999999999999999776545556666666666666666  46889999995321       1112234678


Q ss_pred             CcEEEEEEeCCChhh-HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC--------CcccCHHHHHHHHHhcCCeEEEee
Q 030856           82 SSVAVVVYDVASRQS-FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE--------KRQVSIEEGEAKSRELNVMFIETS  152 (170)
Q Consensus        82 ~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~S  152 (170)
                      +|++++|+|+++|.. ++.+...+....... .+.|..++.||.|...        ....+.++.+.+...+.+.--++-
T Consensus       150 ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l-~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~  228 (376)
T 4a9a_A          150 CNLLFIILDVNKPLHHKQIIEKELEGVGIRL-NKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIA  228 (376)
T ss_dssp             CSEEEEEEETTSHHHHHHHHHHHHHHTTEEE-TCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEE
T ss_pred             cCccccccccCccHHHHHHHHHHHHHhhHhh-ccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCee
Confidence            999999999998732 333333333222111 3567788889999642        233456666666666665333333


Q ss_pred             cCCCCChHHHHHH
Q 030856          153 AKAGFNIKGCSPT  165 (170)
Q Consensus       153 ~~~~~~v~~~~~~  165 (170)
                      ...+...+++.+.
T Consensus       229 ~~~nv~eddl~d~  241 (376)
T 4a9a_A          229 FRCDATVDDLIDV  241 (376)
T ss_dssp             ECSCCCHHHHHHH
T ss_pred             ecccCCHHHHHHH
Confidence            3444555555543

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.68  E-value=2.2e-15  Score=116.98  Aligned_cols=123  Identities=20%  Similarity=0.216  Sum_probs=82.2

Q ss_pred             CCCCCC-CCceeEEEEcCCCCCHHHHHHHHhcC--------CCC----------CCccceeeeeeeEEEEEeCC-----e
Q 030856            1 MAPVSA-LAKYKLVFLGDQSVGKTSIITRFMYD--------KFD----------NTYQATIGIDFLSKTMYLED-----R   56 (170)
Q Consensus         1 m~~~~~-~~~~~i~i~G~~~~GKStll~~l~~~--------~~~----------~~~~~~~~~~~~~~~~~~~~-----~   56 (170)
                      |+...+ .+-.||+|+|+.++|||||.++|+..        ...          .+..+..++......+.+.+     .
T Consensus         4 m~~~~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~   83 (709)
T 4fn5_A            4 MARTTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYD   83 (709)
T ss_dssp             --CCSCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSC
T ss_pred             CCCCCchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCC
Confidence            444333 45579999999999999999998732        110          11122222222233333322     3


Q ss_pred             EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~  127 (170)
                      .+.+.++||||+.+|.......++-+|++|+|+|+...-..+....|.....    .++|.++++||+|+.
T Consensus        84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~----~~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK----YGVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH----HTCCEEEEEECSSST
T ss_pred             CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH----cCCCeEEEEcccccc
Confidence            5789999999999999999999999999999999987644455444433332    369999999999975

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.68  E-value=3.4e-17  Score=117.20  Aligned_cols=101  Identities=17%  Similarity=0.084  Sum_probs=63.5

Q ss_pred             EEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCH--H
Q 030856           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI--E  135 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~--~  135 (170)
                      +.+.++||||......   .....+|++++|+|.+....++.+...   .     .+.|.++|+||+|+........  +
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~-----~~~p~ivv~NK~Dl~~~~~~~~~~~  217 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKG---L-----MEVADLIVINKDDGDNHTNVAIARH  217 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHH---H-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHh---h-----hcccCEEEEECCCCCChHHHHHHHH
Confidence            5799999999654332   245889999999998765433222211   0     1367889999999864322211  1


Q ss_pred             HHHHHHHhc-------CCeEEEeecCCCCChHHHHHHHHhh
Q 030856          136 EGEAKSREL-------NVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       136 ~~~~~~~~~-------~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      +.+......       ..+++++||++|.|+++++++|.+.
T Consensus       218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~  258 (341)
T 2p67_A          218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDF  258 (341)
T ss_dssp             HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHH
Confidence            222211121       4578999999999999999998763

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.66  E-value=2.8e-17  Score=126.05  Aligned_cols=115  Identities=15%  Similarity=0.225  Sum_probs=80.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC--C------CC-----C---ccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDK--F------DN-----T---YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS   73 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~--~------~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   73 (170)
                      .||+|+|+.++|||||.++|+...  .      ..     +   .....+++.......+....+++.++||||+.+|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            589999999999999999997321  1      00     0   011112223333333444557799999999999999


Q ss_pred             hhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856           74 LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        74 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~  128 (170)
                      .....+.-+|++|+|+|+...-.-+....| .....   .++|.++++||+|+..
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~---~~lp~i~~INKmDr~~  133 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRK---MGIPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHH---HTCSCEECCEECCSSS
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCeEEEEecccccc
Confidence            999999999999999999875433443444 23333   2688899999999754

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.66  E-value=6e-16  Score=119.63  Aligned_cols=158  Identities=18%  Similarity=0.200  Sum_probs=96.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCC-CCCccceeee-----------------------------------------
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGI-----------------------------------------   44 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~-~~~~~~~~~~-----------------------------------------   44 (170)
                      ....+|+++|.+++|||||+|++++..+ +.....++..                                         
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            3457999999999999999999999765 3221111100                                         


Q ss_pred             ---------eeeEEEEEeCCeEEEEEEEecCChhh-------------hhhhhhhhh-cCCcEEEEEEeCCChhhHHhHH
Q 030856           45 ---------DFLSKTMYLEDRTVRLQLWDTAGQER-------------FRSLIPSYI-RDSSVAVVVYDVASRQSFLNTS  101 (170)
Q Consensus        45 ---------~~~~~~~~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~~~~~~~  101 (170)
                               +.....+..++ ...+.++||||...             ...+...++ ..+|++++|+|++++..-....
T Consensus       129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l  207 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  207 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred             cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence                     00000011111 12478999999433             233444455 4789999999998643222222


Q ss_pred             HHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHH-H-HHhcC-CeEEEeecCCCCChHHHHHHHHh
Q 030856          102 KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEA-K-SRELN-VMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus       102 ~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~-~-~~~~~-~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ..+..+.   ..+.|+++|+||+|+............. . ....+ .+++.+||++|.|++++++.+.+
T Consensus       208 ~ll~~L~---~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          208 KIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  274 (772)
T ss_dssp             HHHHHHC---TTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred             HHHHHHH---hcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence            2323332   3478999999999997654433221110 0 00123 26788999999999999998875

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.61  E-value=2e-15  Score=106.34  Aligned_cols=98  Identities=19%  Similarity=0.156  Sum_probs=80.6

Q ss_pred             hhhhhhhhhhhhcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC-HHHHHHHHHhcC
Q 030856           68 QERFRSLIPSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-IEEGEAKSRELN  145 (170)
Q Consensus        68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~-~~~~~~~~~~~~  145 (170)
                      ++.+..+.+.++.++|++++|+|+++|+ +++.+..|+..+..   .++|+++|+||+|+.+.+++. .++...+++..+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g  142 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG  142 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence            5667778888999999999999999986 88888899886654   479999999999987544322 355566677778


Q ss_pred             CeEEEeecCCCCChHHHHHHHHh
Q 030856          146 VMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus       146 ~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ++++++||++|.|++++++.+..
T Consensus       143 ~~~~~~SA~~g~gi~~L~~~l~G  165 (302)
T 2yv5_A          143 YDVLKVSAKTGEGIDELVDYLEG  165 (302)
T ss_dssp             CEEEECCTTTCTTHHHHHHHTTT
T ss_pred             CeEEEEECCCCCCHHHHHhhccC
Confidence            99999999999999999988754

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.60  E-value=4.3e-16  Score=111.21  Aligned_cols=102  Identities=12%  Similarity=0.048  Sum_probs=61.9

Q ss_pred             EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHH
Q 030856           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEE  136 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~  136 (170)
                      ...+.++||+|.....   ......+|.+++++|....+..+.+....   .     ..+.++++||+|+..........
T Consensus       147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~-----~~~~ivvlNK~Dl~~~~~~s~~~  215 (337)
T 2qm8_A          147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F-----ELADMIAVNKADDGDGERRASAA  215 (337)
T ss_dssp             TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred             CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h-----ccccEEEEEchhccCchhHHHHH
Confidence            3578999999965321   23356899999999986543222111111   1     23457777999974432222222


Q ss_pred             HHHHHHh----------cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          137 GEAKSRE----------LNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       137 ~~~~~~~----------~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      .+++...          ++.+++.+|++++.|++++++.|.+.
T Consensus       216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~  258 (337)
T 2qm8_A          216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDH  258 (337)
T ss_dssp             HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence            2333221          14578999999999999999998763

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.54  E-value=1.4e-14  Score=95.32  Aligned_cols=102  Identities=7%  Similarity=-0.060  Sum_probs=68.9

Q ss_pred             CChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHH---hc--CCCCeEEEEEeCC-CCCCCcccCHHHHHH
Q 030856           66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRT---ER--GSDVIIVLVGNKT-DLVEKRQVSIEEGEA  139 (170)
Q Consensus        66 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~---~~--~~~~~~vvv~nK~-D~~~~~~~~~~~~~~  139 (170)
                      +|+..++.+|+.|+.++|++|||+|.+|.+.++ .+..+..+..   ..  ..++|++|++||. |+...  .+..+..+
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~e  186 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAH  186 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHHH
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHHH
Confidence            478899999999999999999999999986654 4444433322   21  2578999999995 66433  33333332


Q ss_pred             HHH----hcCCeEEEeecCCCCChHHHHHHHHhhC
Q 030856          140 KSR----ELNVMFIETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       140 ~~~----~~~~~~~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                      ...    .+.+.+..|||.+|+|+.+.++||.+.+
T Consensus       187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l  221 (227)
T 3l82_B          187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV  221 (227)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred             HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence            221    2456899999999999999999998754

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.54  E-value=4.6e-13  Score=96.95  Aligned_cols=86  Identities=17%  Similarity=0.194  Sum_probs=59.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC-CCCccceeeeeeeEEEEEeCCe---------------EEEEEEEecCChhh-
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQER-   70 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~-   70 (170)
                      ...+++++|++|+|||||+|+|.+... .....|..+.+.....+.+.+.               ...+.+||+||... 
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            357899999999999999999999765 4444444444444444444431               13589999999432 


Q ss_pred             ------hhhhhhhhhcCCcEEEEEEeCCC
Q 030856           71 ------FRSLIPSYIRDSSVAVVVYDVAS   93 (170)
Q Consensus        71 ------~~~~~~~~~~~~d~~i~v~d~~~   93 (170)
                            +.......+..+|++++++|+.+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                  22234455789999999999863

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.52  E-value=2.1e-14  Score=103.80  Aligned_cols=88  Identities=16%  Similarity=0.100  Sum_probs=51.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCe---------------EEEEEEEecCChhhhh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFR   72 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~   72 (170)
                      ..++|+++|.+|+|||||+|++.+........|..+.+.....+.+++.               ...+.+||+||.....
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            4589999999999999999999987654444444444433334433331               2358999999977543


Q ss_pred             h-------hhhhhhcCCcEEEEEEeCCChh
Q 030856           73 S-------LIPSYIRDSSVAVVVYDVASRQ   95 (170)
Q Consensus        73 ~-------~~~~~~~~~d~~i~v~d~~~~~   95 (170)
                      +       ....+++++|++++|+|+++.+
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~  130 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRAFEDD  130 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC----
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence            3       4456788999999999998543

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.44  E-value=1.7e-13  Score=94.28  Aligned_cols=103  Identities=7%  Similarity=-0.078  Sum_probs=73.3

Q ss_pred             cCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHH----HHHhc-CCCCeEEEEEeC-CCCCCCcccCHHHHH
Q 030856           65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDE----VRTER-GSDVIIVLVGNK-TDLVEKRQVSIEEGE  138 (170)
Q Consensus        65 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~----~~~~~-~~~~~~vvv~nK-~D~~~~~~~~~~~~~  138 (170)
                      .+|+...+.+|+.|+.++|++|||+|++|++.++ .+..+.+    +.... ..++|++|++|| .|+...  .+..+..
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--ms~~EI~  270 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLA  270 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--CCHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--CCHHHHH
Confidence            4678899999999999999999999999987765 3333332    22221 258999999997 577543  3333332


Q ss_pred             HHHH----hcCCeEEEeecCCCCChHHHHHHHHhhC
Q 030856          139 AKSR----ELNVMFIETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       139 ~~~~----~~~~~~~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                      +...    .+.+.+..|||.+|+|+.+.++||.+.+
T Consensus       271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l  306 (312)
T 3l2o_B          271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV  306 (312)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred             HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence            2211    2456899999999999999999998754

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.27  E-value=3.6e-13  Score=97.27  Aligned_cols=141  Identities=16%  Similarity=0.190  Sum_probs=81.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC------CCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh-------hh
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD------KFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LI   75 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~   75 (170)
                      ..+++++|.+|+|||||+|+|.+.      .......+..+.+.  .....+.   .+.++||||......       ..
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~  236 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDM--IEIPLES---GATLYDTPGIINHHQMAHFVDARD  236 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEE--EEEECST---TCEEEECCSCCCCSSGGGGSCTTT
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEee--EEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHH
Confidence            468999999999999999999976      22222222222222  2222332   278999999542221       11


Q ss_pred             hhhh---cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEee
Q 030856           76 PSYI---RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETS  152 (170)
Q Consensus        76 ~~~~---~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S  152 (170)
                      ...+   ...+.++++++....-.+..+..    +......+.|+++++||.|....... ......+.+..+..+.+.+
T Consensus       237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~  311 (369)
T 3ec1_A          237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPS  311 (369)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSC
T ss_pred             HHHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCC
Confidence            1122   57899999999742211111110    11122357899999999998654433 2333445566666666666


Q ss_pred             cCCCCCh
Q 030856          153 AKAGFNI  159 (170)
Q Consensus       153 ~~~~~~v  159 (170)
                      +.+..++
T Consensus       312 ~~~~~~~  318 (369)
T 3ec1_A          312 KRYAAEF  318 (369)
T ss_dssp             GGGTTTC
T ss_pred             chhhhhc
Confidence            6554444

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.26  E-value=4.3e-11  Score=87.36  Aligned_cols=140  Identities=14%  Similarity=0.198  Sum_probs=70.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCc----cceeeeeeeEEEEEeCCeEEEEEEEecCChhhh--------------
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTY----QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF--------------   71 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------------   71 (170)
                      ++++++|++|+|||||++.+.+..+....    .+..............+....++++|++|....              
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i  122 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI  122 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence            57999999999999999999987543211    111111111111122222346899999884321              


Q ss_pred             hhhhhh----hh---------cC--CcE-EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC--
Q 030856           72 RSLIPS----YI---------RD--SSV-AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--  133 (170)
Q Consensus        72 ~~~~~~----~~---------~~--~d~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~--  133 (170)
                      ......    +.         ..  .|+ ++|+.|...+-+-.+ .    .+.+....+.|+++|.||+|.....+..  
T Consensus       123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-i----eilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l  197 (427)
T 2qag_B          123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-L----VTMKKLDSKVNIIPIIAKADAISKSELTKF  197 (427)
T ss_dssp             HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-H----HHHHHTCSCSEEEEEESCGGGSCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-H----HHHHHHhhCCCEEEEEcchhccchHHHHHH
Confidence            011111    11         11  233 555666554322222 1    2222223579999999999976543321  


Q ss_pred             HHHHHHHHHhcCCeEEEeecC
Q 030856          134 IEEGEAKSRELNVMFIETSAK  154 (170)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~S~~  154 (170)
                      ...........|++++.+|.-
T Consensus       198 ~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          198 KIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             HHHHHHHHBTTBCCCCCCC--
T ss_pred             HHHHHHHHHHcCCcEEecCCC
Confidence            122222234467777777753

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.23  E-value=3.6e-11  Score=86.79  Aligned_cols=95  Identities=20%  Similarity=0.323  Sum_probs=72.2

Q ss_pred             ChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHH----HHHHH
Q 030856           67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG----EAKSR  142 (170)
Q Consensus        67 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~----~~~~~  142 (170)
                      ..+.|.+....+.+.++++++|+|+++++     ..|...+.... .+.|+++|+||+|+.... ...+..    +..++
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence            35778888999999999999999999863     34444555544 378999999999986533 233333    33466


Q ss_pred             hcCC---eEEEeecCCCCChHHHHHHHHh
Q 030856          143 ELNV---MFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus       143 ~~~~---~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ..|+   .++.+||++|.|++++++.|.+
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~  156 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEY  156 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhh
Confidence            6777   7999999999999999999865

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.21  E-value=1.3e-11  Score=92.14  Aligned_cols=151  Identities=18%  Similarity=0.177  Sum_probs=83.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh------cCCCC----CCcccee-----------eeeeeEEEEE-------------
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFM------YDKFD----NTYQATI-----------GIDFLSKTMY-------------   52 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~------~~~~~----~~~~~~~-----------~~~~~~~~~~-------------   52 (170)
                      .+...|+++|.+|+||||++++|.      +.+.-    +.+.+..           +..+......             
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            345789999999999999999998      32210    0000100           0111110000             


Q ss_pred             eCCeEEEEEEEecCChhhhhh-hh---hhh--hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeE-EEEEeCCC
Q 030856           53 LEDRTVRLQLWDTAGQERFRS-LI---PSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVII-VLVGNKTD  125 (170)
Q Consensus        53 ~~~~~~~~~i~D~~g~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-vvv~nK~D  125 (170)
                      .....+.+.|+||||...... ..   ...  +..+|.+++|+|++....   .......+..    .+|+ .+|+||+|
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~---~~~~a~~~~~----~~~i~gvVlNK~D  251 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA---CEAQAKAFKD----KVDVASVIVTKLD  251 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT---HHHHHHHHHH----HHCCCCEEEECTT
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc---HHHHHHHHHh----hcCceEEEEeCCc
Confidence            000235789999999653211 11   111  237899999999986432   1111222222    2564 78889999


Q ss_pred             CCCCcccCHHHHHHHHHhcCCeE------------------EEeecCCCCC-hHHHHHHHHh
Q 030856          126 LVEKRQVSIEEGEAKSRELNVMF------------------IETSAKAGFN-IKGCSPTIRR  168 (170)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~~S~~~~~~-v~~~~~~l~~  168 (170)
                      ......    .+.......+.|+                  +.+|+..|.| ++++++++.+
T Consensus       252 ~~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e  309 (504)
T 2j37_W          252 GHAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE  309 (504)
T ss_dssp             SCCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTT
T ss_pred             cccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHH
Confidence            753221    1222333444433                  3468888998 9999998864

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.20  E-value=7.7e-13  Score=95.48  Aligned_cols=136  Identities=12%  Similarity=0.140  Sum_probs=74.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCC-------CccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh-------
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDN-------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------   74 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------   74 (170)
                      ..+++++|.+|+|||||+|+|.+.....       ...+..+  ...........   +.++||||......+       
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~  234 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTT--LDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQ  234 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCee--cceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHH
Confidence            4689999999999999999999763111       1112222  12222223322   789999995432211       


Q ss_pred             -hhhh--hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEe
Q 030856           75 -IPSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIET  151 (170)
Q Consensus        75 -~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (170)
                       ...+  ....+.++++++......+..+..    +......+.|+++++||.|....... ......+.+..|..+++.
T Consensus       235 ~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~  309 (368)
T 3h2y_A          235 SLKLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPP  309 (368)
T ss_dssp             HHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSS
T ss_pred             HHHHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCC
Confidence             1111  246788889888742211111110    11122357899999999998654333 233344455556554444


Q ss_pred             ecC
Q 030856          152 SAK  154 (170)
Q Consensus       152 S~~  154 (170)
                      ++.
T Consensus       310 ~~~  312 (368)
T 3h2y_A          310 TPE  312 (368)
T ss_dssp             CHH
T ss_pred             chh
Confidence            443

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.18  E-value=7.3e-10  Score=80.84  Aligned_cols=155  Identities=12%  Similarity=0.072  Sum_probs=82.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccc-eeeeee--eEEEEEeCCeEEEEEEEecCChhhhhhhhhhh-----hc
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-TIGIDF--LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY-----IR   80 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----~~   80 (170)
                      ...++++|++|+|||||+|.+.+...+..-.- ..+.+.  ........ ....+.+||++|..........+     +.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            45899999999999999999998543221110 001000  01111111 11147899999854322222222     33


Q ss_pred             CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC-------CCcccCHH----HHHHHHH----hcC
Q 030856           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV-------EKRQVSIE----EGEAKSR----ELN  145 (170)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~-------~~~~~~~~----~~~~~~~----~~~  145 (170)
                      ..+..++ ++...... +. ......+..   .+.|+++|.||.|+.       .-+....+    ..++++.    ..+
T Consensus       148 ~~~~~~~-lS~G~~~k-qr-v~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g  221 (413)
T 1tq4_A          148 EYDFFII-ISATRFKK-ND-IDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG  221 (413)
T ss_dssp             GCSEEEE-EESSCCCH-HH-HHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccCCeEE-eCCCCccH-HH-HHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4455555 67652111 11 111122222   368999999999864       11222222    2333331    222


Q ss_pred             ---CeEEEeec--CCCCChHHHHHHHHhhC
Q 030856          146 ---VMFIETSA--KAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       146 ---~~~~~~S~--~~~~~v~~~~~~l~~~i  170 (170)
                         ..++.+|+  .++.|++++.+.+.+.+
T Consensus       222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~L  251 (413)
T 1tq4_A          222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDL  251 (413)
T ss_dssp             CSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred             CCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence               36788999  66677999999987653

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.12  E-value=8.5e-11  Score=81.42  Aligned_cols=136  Identities=13%  Similarity=0.168  Sum_probs=69.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCc--------cceeeeeeeEEEEEeCC--eEEEEEEEecCChhhhhh-----
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTY--------QATIGIDFLSKTMYLED--RTVRLQLWDTAGQERFRS-----   73 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~--~~~~~~i~D~~g~~~~~~-----   73 (170)
                      .++++++|+.|+|||||++.+.+...+...        .+... ...........  ....++++|++|......     
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~-~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~   80 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTV-EIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW   80 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCC-SCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcce-eeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence            478999999999999999999975432210        00000 00111111111  123678999998321100     


Q ss_pred             -hhhh----------------------hhcCCcEEEEEEeCC-ChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 030856           74 -LIPS----------------------YIRDSSVAVVVYDVA-SRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK  129 (170)
Q Consensus        74 -~~~~----------------------~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~  129 (170)
                       ....                      .+..+++.+++.|.. .+-.-.. ...+..+.   .. .++++|++|+|....
T Consensus        81 ~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~---~~-~~vI~Vi~K~D~lt~  155 (270)
T 3sop_A           81 EPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS---KV-VNIIPVIAKADTMTL  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH---TT-SEEEEEETTGGGSCH
T ss_pred             HHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH---hc-CcEEEEEeccccCCH
Confidence             0000                      122468888888854 2211111 22222332   23 899999999997653


Q ss_pred             cccC--HHHHHHHHHhcCCeEEE
Q 030856          130 RQVS--IEEGEAKSRELNVMFIE  150 (170)
Q Consensus       130 ~~~~--~~~~~~~~~~~~~~~~~  150 (170)
                      .+..  ....+.....+++.+++
T Consensus       156 ~e~~~~k~~i~~~l~~~~i~i~~  178 (270)
T 3sop_A          156 EEKSEFKQRVRKELEVNGIEFYP  178 (270)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHHHHHHHcCccccC
Confidence            3221  12333344555665553

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.11  E-value=1e-10  Score=84.48  Aligned_cols=95  Identities=23%  Similarity=0.293  Sum_probs=70.3

Q ss_pred             ChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHH----HHHH
Q 030856           67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE----AKSR  142 (170)
Q Consensus        67 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~----~~~~  142 (170)
                      .++.|.+....+..+++++++|+|++++++     .|...+.... .+.|+++|+||+|+.... ...+...    ..++
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~  129 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE  129 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence            467888989999999999999999998763     2333334433 378999999999987532 2233333    3356


Q ss_pred             hcCC---eEEEeecCCCCChHHHHHHHHh
Q 030856          143 ELNV---MFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus       143 ~~~~---~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ..|.   .++.+||++|.|++++++.+.+
T Consensus       130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~  158 (369)
T 3ec1_A          130 ELGLCPVDVCLVSAAKGIGMAKVMEAINR  158 (369)
T ss_dssp             TTTCCCSEEEECBTTTTBTHHHHHHHHHH
T ss_pred             HcCCCcccEEEEECCCCCCHHHHHHHHHh
Confidence            6676   7899999999999999999864

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.07  E-value=3.9e-10  Score=78.56  Aligned_cols=98  Identities=10%  Similarity=0.109  Sum_probs=67.2

Q ss_pred             EEecCChh-hhhhhhhhhhcCCcEEEEEEeCCChhhHHh--HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHH
Q 030856           62 LWDTAGQE-RFRSLIPSYIRDSSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE  138 (170)
Q Consensus        62 i~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~  138 (170)
                      |-..||+. .........+..+|+++.|+|+.+|.+...  +..++        .+.|.++|+||+|+.+...  .+...
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~   72 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK   72 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence            44578865 445566677899999999999999876643  33322        4789999999999865211  12223


Q ss_pred             HHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          139 AKSRELNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       139 ~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      ++.+..+++++.+||.++.|++++++.+.+.
T Consensus        73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~  103 (282)
T 1puj_A           73 EHFENQGIRSLSINSVNGQGLNQIVPASKEI  103 (282)
T ss_dssp             HHHHTTTCCEEECCTTTCTTGGGHHHHHHHH
T ss_pred             HHHHhcCCcEEEEECCCcccHHHHHHHHHHH
Confidence            3444557899999999999999999887653

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.83  E-value=2.2e-08  Score=73.55  Aligned_cols=142  Identities=16%  Similarity=0.146  Sum_probs=78.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC------CC---C-CCccc-----------eeeeeeeEEEEEeC------------
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD------KF---D-NTYQA-----------TIGIDFLSKTMYLE------------   54 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~------~~---~-~~~~~-----------~~~~~~~~~~~~~~------------   54 (170)
                      ++..|+++|++|+||||++.+|...      +.   . +.+.+           ..+..+.......+            
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            4678999999999999999888731      11   0 00100           00111111000000            


Q ss_pred             -CeEEEEEEEecCChhhhhhh----hh--hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856           55 -DRTVRLQLWDTAGQERFRSL----IP--SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        55 -~~~~~~~i~D~~g~~~~~~~----~~--~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~  127 (170)
                       ...+.+.|+||+|.......    ..  .....+|.+++|+|++....   .......+...   -.+..+|+||.|..
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~---a~~~a~~f~~~---~~i~gVIlTKlD~~  252 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ---AYNQALAFKEA---TPIGSIIVTKLDGS  252 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHHS---CTTEEEEEECCSSC
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh---HHHHHHHHHhh---CCCeEEEEECCCCc
Confidence             01257899999995432111    11  11336899999999875422   22222223222   23456788999974


Q ss_pred             CCcccCHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 030856          128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG  161 (170)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~  161 (170)
                      .    ....+.......+.|+..++.  |+++++
T Consensus       253 ~----~gG~~ls~~~~~g~PI~fig~--Ge~vdd  280 (443)
T 3dm5_A          253 A----KGGGALSAVAATGAPIKFIGT--GEKIDD  280 (443)
T ss_dssp             S----SHHHHHHHHHTTCCCEEEEEC--SSSTTC
T ss_pred             c----cccHHHHHHHHHCCCEEEEEc--CCChHH
Confidence            3    234455666678888887775  666654

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.81  E-value=6.9e-09  Score=76.31  Aligned_cols=84  Identities=17%  Similarity=0.105  Sum_probs=47.6

Q ss_pred             EEEEEEEecCChhhhhh-hh---hhh--hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCC-e-EEEEEeCCCCCC
Q 030856           57 TVRLQLWDTAGQERFRS-LI---PSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDV-I-IVLVGNKTDLVE  128 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~-~vvv~nK~D~~~  128 (170)
                      .+.+.|+||||...... ..   ...  +..+|.+++|+|++...   ........+.    ... | ..+|+||+|...
T Consensus       180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~----~~~~~i~gvVlnK~D~~~  252 (432)
T 2v3c_C          180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAFK----EAVGEIGSIIVTKLDGSA  252 (432)
T ss_dssp             SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHHH----TTSCSCEEEEEECSSSCS
T ss_pred             CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHHh----hcccCCeEEEEeCCCCcc
Confidence            35689999999654211 11   111  22689999999986542   2222222221    234 5 788899999742


Q ss_pred             CcccCHHHHHHHHHhcCCeEEEe
Q 030856          129 KRQVSIEEGEAKSRELNVMFIET  151 (170)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~  151 (170)
                      .    ...+.......+.++..+
T Consensus       253 ~----~g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          253 K----GGGALSAVAETKAPIKFI  271 (432)
T ss_dssp             T----THHHHHHHHHSSCCEEEE
T ss_pred             c----hHHHHHHHHHHCCCEEEe
Confidence            1    123344566667665554

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.80  E-value=2.7e-09  Score=74.32  Aligned_cols=58  Identities=21%  Similarity=0.279  Sum_probs=35.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChh
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   69 (170)
                      ...++++++|.||+|||||+|++.+.... ....+..+.+..  ....+.   .+.++||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCcC
Confidence            35689999999999999999999987642 222333322222  122222   57899999954

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.74  E-value=5.1e-09  Score=72.22  Aligned_cols=57  Identities=23%  Similarity=0.283  Sum_probs=34.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   70 (170)
                      ++++++|.+|+|||||+|++.+..... ..++.+.+........+   ..+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLE---NGVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence            599999999999999999999876532 11222222211122222   2578999999653

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.67  E-value=1.7e-08  Score=69.54  Aligned_cols=94  Identities=13%  Similarity=0.027  Sum_probs=62.5

Q ss_pred             cCChhh-hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHh
Q 030856           65 TAGQER-FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE  143 (170)
Q Consensus        65 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~  143 (170)
                      .||+.. ........+.++|+++.|+|+.+|.+.....  +. +   .  +.|.++|+||+|+.+...  .+...++.+.
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l---l--~k~~iivlNK~DL~~~~~--~~~~~~~~~~   73 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F---S--RKETIILLNKVDIADEKT--TKKWVEFFKK   73 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C---T--TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h---c--CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence            466542 2335666788999999999999886654311  01 1   1  689999999999865321  1222334445


Q ss_pred             cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          144 LNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       144 ~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      .+.++ .+||.++.|++++++.+.+.
T Consensus        74 ~g~~v-~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           74 QGKRV-ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             TTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred             cCCeE-EEECCCCcCHHHHHHHHHHh
Confidence            67888 99999999999999887653

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.66  E-value=5e-08  Score=71.59  Aligned_cols=92  Identities=13%  Similarity=0.068  Sum_probs=55.0

Q ss_pred             EEEEEEEecCChhh--hhh----hhhh--hhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856           57 TVRLQLWDTAGQER--FRS----LIPS--YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        57 ~~~~~i~D~~g~~~--~~~----~~~~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~  128 (170)
                      .+.+.++||||...  ...    ....  .....+.+++|+|+.....   .......+....   .+..+|+||.|...
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~---a~~~a~~f~~~~---~~~gVIlTKlD~~a  252 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK---AYDLASRFHQAS---PIGSVIITKMDGTA  252 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---GHHHHHHHHHHC---SSEEEEEECGGGCS
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH---HHHHHHHHhccc---CCcEEEEecccccc
Confidence            35678999999543  111    1111  1225689999999875422   222223333322   34677889999642


Q ss_pred             CcccCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 030856          129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (170)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~  160 (170)
                          ....+.......+.|+..++.  |++++
T Consensus       253 ----~~G~als~~~~~g~Pi~fig~--Ge~v~  278 (433)
T 3kl4_A          253 ----KGGGALSAVVATGATIKFIGT--GEKID  278 (433)
T ss_dssp             ----CHHHHHHHHHHHTCEEEEEEC--CSSSS
T ss_pred             ----cchHHHHHHHHHCCCEEEEEC--CCChH
Confidence                334566667778999888775  66654

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.59  E-value=4.2e-08  Score=74.54  Aligned_cols=64  Identities=16%  Similarity=0.057  Sum_probs=38.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCcccee-eeeeeEEEE--Ee-CCeEEEEEEEecCChhh
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATI-GIDFLSKTM--YL-EDRTVRLQLWDTAGQER   70 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~-~~~~~~~~~--~~-~~~~~~~~i~D~~g~~~   70 (170)
                      .+..+|+|+|.||+|||||+|+|.+....-....+. +.....+.+  .. ......+.++||||...
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            456889999999999999999999875321111111 111111111  11 12234689999999553

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.58  E-value=2.9e-07  Score=64.56  Aligned_cols=91  Identities=12%  Similarity=0.044  Sum_probs=55.8

Q ss_pred             EEEEEEecCChhh--hhh-hhh-----hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCC
Q 030856           58 VRLQLWDTAGQER--FRS-LIP-----SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVE  128 (170)
Q Consensus        58 ~~~~i~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~  128 (170)
                      +.+.++||||...  ... +..     .....+|.+++|.|....   .........+..    ..+ ..+|.||.|...
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~----~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ----ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence            5689999999765  221 111     124578999999998643   222222222222    244 677889999642


Q ss_pred             CcccCHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 030856          129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG  161 (170)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~  161 (170)
                          ....+...+...+.++..++  .|+++++
T Consensus       254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          254 ----KGGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             ----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence                23445667778888887776  4666654

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.50  E-value=5.1e-07  Score=69.26  Aligned_cols=25  Identities=28%  Similarity=0.453  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFD   35 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~   35 (170)
                      .++++|+.|+|||||++.+.+-..+
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~~P   71 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVALP   71 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred             eEEEECCCCChHHHHHHHHhCCCCC
Confidence            4999999999999999999986433

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.48  E-value=7.3e-08  Score=67.76  Aligned_cols=91  Identities=20%  Similarity=0.231  Sum_probs=61.2

Q ss_pred             hhhhhhhcCCcEEEEEEeCCChhh-HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc--CHHHHHHHHHhcCCeEE
Q 030856           73 SLIPSYIRDSSVAVVVYDVASRQS-FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSRELNVMFI  149 (170)
Q Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~  149 (170)
                      .+.+..+.++|.+++|+|+.+|.. ...+..++...   ...++|.++|+||+|+.+....  ..+...+..+..|.+++
T Consensus        78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~---~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~  154 (307)
T 1t9h_A           78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLV---EANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY  154 (307)
T ss_dssp             EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHH---HTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHH---HHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence            345556889999999999987654 33334333222   2357899999999998754320  11233333345578999


Q ss_pred             EeecCCCCChHHHHHHH
Q 030856          150 ETSAKAGFNIKGCSPTI  166 (170)
Q Consensus       150 ~~S~~~~~~v~~~~~~l  166 (170)
                      .+|+.++.|+++++...
T Consensus       155 ~~sa~~~~g~~~L~~~~  171 (307)
T 1t9h_A          155 LTSSKDQDSLADIIPHF  171 (307)
T ss_dssp             ECCHHHHTTCTTTGGGG
T ss_pred             EEecCCCCCHHHHHhhc
Confidence            99999999998876543

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.36  E-value=1.8e-06  Score=61.30  Aligned_cols=142  Identities=15%  Similarity=0.193  Sum_probs=75.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCc-cce--------------------eeeeeeEEEEEe-------------
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTY-QAT--------------------IGIDFLSKTMYL-------------   53 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~-~~~--------------------~~~~~~~~~~~~-------------   53 (170)
                      +.--++++|++|+||||+++.+.+...+... ...                    .+..+.......             
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~  207 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA  207 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence            4567899999999999999998753111100 000                    000010000000             


Q ss_pred             CCeEEEEEEEecCChhhhhhhh-hh-----hhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856           54 EDRTVRLQLWDTAGQERFRSLI-PS-----YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        54 ~~~~~~~~i~D~~g~~~~~~~~-~~-----~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~  127 (170)
                      ......+.+.|++|........ ..     ..-..|-.+++.|.....   .+...+..+....  + ...+++||.|..
T Consensus       208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~--~-it~iilTKlD~~  281 (328)
T 3e70_C          208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV--K-IDGIILTKLDAD  281 (328)
T ss_dssp             HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS--C-CCEEEEECGGGC
T ss_pred             HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc--C-CCEEEEeCcCCc
Confidence            0011345679999964322211 11     122478899999976432   2333333333332  2 235667999952


Q ss_pred             CCcccCHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 030856          128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG  161 (170)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~  161 (170)
                      .    ....+...+...+.|+..++  +|+++++
T Consensus       282 a----~~G~~l~~~~~~~~pi~~i~--~Ge~v~d  309 (328)
T 3e70_C          282 A----RGGAALSISYVIDAPILFVG--VGQGYDD  309 (328)
T ss_dssp             S----CCHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred             c----chhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            2    12445667778888888877  6666543

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.36  E-value=4.6e-08  Score=72.85  Aligned_cols=102  Identities=12%  Similarity=0.060  Sum_probs=58.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh--hhhhh--------h
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--FRSLI--------P   76 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~--------~   76 (170)
                      ..+..|+++|.+|+||||+.++|...... ...++.............+......+||..|...  .+..+        .
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            34678999999999999999998754210 0111111110000000111112346789888732  23332        5


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHh
Q 030856           77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE  110 (170)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~  110 (170)
                      .++...++.++|+|.++. +.+....|+..+...
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~  148 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN  148 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence            566678899999999986 455556665555543

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.17  E-value=1.1e-05  Score=57.95  Aligned_cols=85  Identities=15%  Similarity=0.160  Sum_probs=54.5

Q ss_pred             hhcCCcEEEEEEeCCChhh-HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc-CHHHHHHHHHhcCCeEEEeecCC
Q 030856           78 YIRDSSVAVVVYDVASRQS-FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSRELNVMFIETSAKA  155 (170)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~S~~~  155 (170)
                      ...++|.+++|.+. +|.. ...+..++.....   .++|.++|+||+|+.+.... ..+.........|.+++.+|+.+
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~  202 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT  202 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            36789999988665 4543 3334444333222   36788999999998653220 01112222335678999999999


Q ss_pred             CCChHHHHHHH
Q 030856          156 GFNIKGCSPTI  166 (170)
Q Consensus       156 ~~~v~~~~~~l  166 (170)
                      +.|++++...+
T Consensus       203 ~~gl~~L~~~~  213 (358)
T 2rcn_A          203 QDGLKPLEEAL  213 (358)
T ss_dssp             TBTHHHHHHHH
T ss_pred             CcCHHHHHHhc
Confidence            99999987654

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.12  E-value=3.8e-06  Score=61.94  Aligned_cols=26  Identities=12%  Similarity=0.087  Sum_probs=21.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .+-.-|+|+|++++|||+|+|++++.
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhh
Confidence            34566889999999999999999863

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.97  E-value=4.5e-06  Score=54.16  Aligned_cols=23  Identities=26%  Similarity=0.632  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ++++++|++|+|||||++.+.+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999988764

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.97  E-value=1.3e-05  Score=52.83  Aligned_cols=85  Identities=8%  Similarity=0.073  Sum_probs=54.5

Q ss_pred             EEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhc--CCCCeEEEEEeCCCCCCCcccCHH
Q 030856           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER--GSDVIIVLVGNKTDLVEKRQVSIE  135 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~vvv~nK~D~~~~~~~~~~  135 (170)
                      +.+.++|+|+..  .......+..+|.++++...+.. + ..+...+..+....  .++.++.+|.|+.|...  .. ..
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~--~~-~~  148 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA--TM-LN  148 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE--EE-EH
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc--hH-HH
Confidence            578999999865  34455567789999999987643 3 55555555554432  24577899999999532  11 23


Q ss_pred             HHHHHHHhcCCeEE
Q 030856          136 EGEAKSRELNVMFI  149 (170)
Q Consensus       136 ~~~~~~~~~~~~~~  149 (170)
                      +..+..+.++.+++
T Consensus       149 ~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          149 VLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHHTCCBC
T ss_pred             HHHHHHHHcCCcee
Confidence            34555555565444

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.87  E-value=0.00023  Score=47.23  Aligned_cols=85  Identities=7%  Similarity=-0.031  Sum_probs=54.7

Q ss_pred             EEEEEEecCCh-hhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHH
Q 030856           58 VRLQLWDTAGQ-ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEE  136 (170)
Q Consensus        58 ~~~~i~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~  136 (170)
                      +.+.++|+|+. ..  ......+..+|.+|++...+ ..++..+...+..+....  +.++.+|+|+.|....  ....+
T Consensus        68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~~  140 (209)
T 3cwq_A           68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGDE  140 (209)
T ss_dssp             CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHHH
T ss_pred             CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHHH
Confidence            56889999986 32  23445677899999998865 456666666666665532  4568889999985320  11344


Q ss_pred             HHHHHHhcCCeEE
Q 030856          137 GEAKSRELNVMFI  149 (170)
Q Consensus       137 ~~~~~~~~~~~~~  149 (170)
                      ..+..+..+.+++
T Consensus       141 ~~~~l~~~g~~v~  153 (209)
T 3cwq_A          141 ARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHTTCCBC
T ss_pred             HHHHHHHcCCchh
Confidence            4455555665544

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.86  E-value=8.3e-06  Score=52.88  Aligned_cols=23  Identities=30%  Similarity=0.535  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      -.++++|++|||||||++.+.+.
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46899999999999999999864

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.82  E-value=0.00027  Score=52.12  Aligned_cols=84  Identities=13%  Similarity=0.024  Sum_probs=46.0

Q ss_pred             EEEEEEEecCChhhhhh-hhh-----hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCC
Q 030856           57 TVRLQLWDTAGQERFRS-LIP-----SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEK  129 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~~  129 (170)
                      .+.+.|+||||...... ...     ..+..++.+++|+|+....   ........+..    ..+ .-+|+||.|....
T Consensus       183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~---~~~~~~~~f~~----~l~i~gvVlnK~D~~~~  255 (433)
T 2xxa_A          183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ---DAANTAKAFNE----ALPLTGVVLTKVDGDAR  255 (433)
T ss_dssp             TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT---THHHHHHHHHH----HSCCCCEEEECTTSSSC
T ss_pred             CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH---HHHHHHHHHhc----cCCCeEEEEecCCCCcc
Confidence            35689999999654321 111     1244789999999987432   22222222222    233 3457799996422


Q ss_pred             cccCHHHHHHHHHhcCCeEEEe
Q 030856          130 RQVSIEEGEAKSRELNVMFIET  151 (170)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~  151 (170)
                      .    ..+.......+.++..+
T Consensus       256 ~----g~~l~i~~~~~~Pi~~i  273 (433)
T 2xxa_A          256 G----GAALSIRHITGKPIKFL  273 (433)
T ss_dssp             C----THHHHHHHHHCCCEEEE
T ss_pred             H----HHHHHHHHHHCCCeEEE
Confidence            1    23345555566655444

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.82  E-value=1.4e-05  Score=52.51  Aligned_cols=28  Identities=21%  Similarity=0.407  Sum_probs=22.8

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      +..+.--|+|+|++|+|||||++.|...
T Consensus        15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           15 YFQGRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             -CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence            3445567899999999999999999864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.81  E-value=1.1e-05  Score=53.16  Aligned_cols=22  Identities=18%  Similarity=0.492  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~   31 (170)
                      -.++++|++|+|||||++.+.+
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999876

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.80  E-value=1.7e-05  Score=51.69  Aligned_cols=25  Identities=20%  Similarity=0.255  Sum_probs=21.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      +.-.++++|++|+|||||++.+.+.
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc
Confidence            3456899999999999999999875

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.74  E-value=1.6e-05  Score=52.40  Aligned_cols=23  Identities=17%  Similarity=0.317  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      --++++|++|||||||++.+.+.
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            35899999999999999998864

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.74  E-value=1.9e-05  Score=52.33  Aligned_cols=25  Identities=16%  Similarity=0.280  Sum_probs=21.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      .+...|+++|+.|||||||++.+.+
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            4456799999999999999998775

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.72  E-value=1.8e-05  Score=50.91  Aligned_cols=20  Identities=20%  Similarity=0.532  Sum_probs=17.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 030856           11 KLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~   30 (170)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999654

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.70  E-value=2.5e-05  Score=51.79  Aligned_cols=25  Identities=12%  Similarity=0.227  Sum_probs=21.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      .+...|+|+|++|+|||||++.+.+
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998775

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.70  E-value=2.1e-05  Score=52.70  Aligned_cols=24  Identities=17%  Similarity=0.300  Sum_probs=21.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      --++++|+.|+|||||++.+.+..
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            467899999999999999998754

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.70  E-value=2.1e-05  Score=52.15  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      -++++|+.|+|||||++.+.+-.
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47899999999999999988643

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.68  E-value=2.2e-05  Score=52.54  Aligned_cols=24  Identities=33%  Similarity=0.647  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      -.++|+|++|+|||||++.+.+..
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            358999999999999999988743

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.68  E-value=3e-05  Score=50.09  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=21.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      .+...|+++|++|+||||+.+.|..
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence            3456799999999999999998874

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.67  E-value=3.6e-05  Score=50.00  Aligned_cols=28  Identities=18%  Similarity=0.271  Sum_probs=23.3

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ...+..+|+++|++||||||+.+.|...
T Consensus         6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            6 EQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3445678999999999999999988754

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.65  E-value=3.2e-05  Score=50.98  Aligned_cols=25  Identities=28%  Similarity=0.434  Sum_probs=21.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      ...|+++|++||||||+++.+.+..
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            4578999999999999999998764

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.65  E-value=3.2e-05  Score=49.47  Aligned_cols=20  Identities=15%  Similarity=0.250  Sum_probs=18.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHH
Q 030856           10 YKLVFLGDQSVGKTSIITRF   29 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l   29 (170)
                      +.|+++|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.64  E-value=3e-05  Score=51.41  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=21.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      .-|+++|++|+|||||++.|....
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHST
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            458899999999999999998754

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.63  E-value=3.5e-05  Score=50.74  Aligned_cols=24  Identities=25%  Similarity=0.319  Sum_probs=20.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      +...|+++|++|+|||||++.+.+
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999998875

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.63  E-value=3.4e-05  Score=50.31  Aligned_cols=21  Identities=19%  Similarity=0.586  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030856           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~   32 (170)
                      |+|+||+|+|||||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999854

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.62  E-value=5.2e-05  Score=48.71  Aligned_cols=24  Identities=17%  Similarity=0.297  Sum_probs=20.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      +...|+++|++|+||||+.+.+.+
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            345789999999999999998864

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.61  E-value=3.3e-05  Score=49.46  Aligned_cols=23  Identities=17%  Similarity=0.366  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ..|+++|++||||||+.+.+...
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999998764

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.61  E-value=6.4e-05  Score=49.47  Aligned_cols=26  Identities=15%  Similarity=0.208  Sum_probs=21.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ..+...|+++|++||||||+.+.|..
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34456799999999999999998874

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.60  E-value=4.5e-05  Score=51.65  Aligned_cols=24  Identities=13%  Similarity=0.185  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .++++|+.|+|||||++.+.+-..
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~~   56 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLDK   56 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            479999999999999999886543

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.59  E-value=5.5e-05  Score=49.77  Aligned_cols=26  Identities=15%  Similarity=0.307  Sum_probs=22.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ....+.|+++|++||||||+.+.|..
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            45567899999999999999998875

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.59  E-value=4.4e-05  Score=50.59  Aligned_cols=25  Identities=16%  Similarity=0.191  Sum_probs=21.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      .+...|+++|.+||||||+.+.|..
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999874

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.59  E-value=4e-05  Score=50.61  Aligned_cols=25  Identities=28%  Similarity=0.441  Sum_probs=21.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      +..-|+++|++|||||||.+.|...
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3456899999999999999998754

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.58  E-value=5.1e-05  Score=48.80  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ..|+++|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999986

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.58  E-value=4.3e-05  Score=54.81  Aligned_cols=24  Identities=25%  Similarity=0.423  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .++++|++|+|||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            689999999999999999998654

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.58  E-value=4.1e-05  Score=48.59  Aligned_cols=24  Identities=21%  Similarity=0.325  Sum_probs=21.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      -.++++|+.|+|||||++.+.+..
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            358999999999999999988754

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.57  E-value=3.9e-05  Score=51.54  Aligned_cols=23  Identities=13%  Similarity=0.238  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999988654

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.56  E-value=4.7e-05  Score=50.61  Aligned_cols=22  Identities=18%  Similarity=0.368  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ++|+++|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998854

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.56  E-value=5.1e-05  Score=49.31  Aligned_cols=23  Identities=26%  Similarity=0.182  Sum_probs=20.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ...|++.|++||||||+.+.|..
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998865

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.56  E-value=4.3e-05  Score=49.98  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .++++|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5899999999999999988763

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.56  E-value=4.4e-05  Score=49.71  Aligned_cols=21  Identities=24%  Similarity=0.401  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~   31 (170)
                      .++++|++|+|||||++.+.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.56  E-value=5.4e-05  Score=51.50  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=20.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 030856            9 KYKLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~   30 (170)
                      ...|+++|++|||||||++.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999988

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.55  E-value=5e-05  Score=50.52  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ++|+++|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999864

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.55  E-value=5.2e-05  Score=48.42  Aligned_cols=22  Identities=9%  Similarity=0.270  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .|+++|++||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998753

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.55  E-value=4.9e-05  Score=51.60  Aligned_cols=23  Identities=22%  Similarity=0.216  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.53  E-value=5.2e-05  Score=52.55  Aligned_cols=24  Identities=25%  Similarity=0.304  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .++++|+.|+|||||++.+.+-..
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~~   59 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGILK   59 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCC
Confidence            478999999999999999987543

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.53  E-value=5.3e-05  Score=52.14  Aligned_cols=24  Identities=13%  Similarity=0.315  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .++++|+.|+|||||++.+.+-..
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~~   57 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLEK   57 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999887543

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.53  E-value=5.9e-05  Score=51.12  Aligned_cols=23  Identities=17%  Similarity=0.465  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999988653

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.52  E-value=7.3e-05  Score=49.88  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .++++|+.|+|||||++.+.+-..
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~~   60 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYLK   60 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999987543

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.52  E-value=6.2e-05  Score=50.37  Aligned_cols=23  Identities=13%  Similarity=0.159  Sum_probs=20.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ...|+++|++||||||+.+.+..
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998865

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.51  E-value=7.2e-05  Score=48.72  Aligned_cols=24  Identities=21%  Similarity=0.317  Sum_probs=20.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      +...|+++|.+||||||+.+.|..
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998764

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.51  E-value=8.2e-05  Score=51.31  Aligned_cols=24  Identities=13%  Similarity=0.239  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .++++|+.|+|||||++.+.+-..
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~~   62 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYLS   62 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            478999999999999999987543

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.50  E-value=9.4e-05  Score=50.32  Aligned_cols=23  Identities=22%  Similarity=0.270  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999988754

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.50  E-value=8.1e-05  Score=48.21  Aligned_cols=24  Identities=25%  Similarity=0.450  Sum_probs=20.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      +...|+++|++||||||+.+.|..
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998864

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.49  E-value=5.6e-05  Score=51.99  Aligned_cols=23  Identities=17%  Similarity=0.258  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      =.++++|+.|||||||++.+.+-
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHHHh
Confidence            46899999999999999998863

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.49  E-value=6.1e-05  Score=49.61  Aligned_cols=22  Identities=18%  Similarity=0.366  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~   31 (170)
                      .+|+++|++||||||+.+.|..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999999876

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.49  E-value=8e-05  Score=50.19  Aligned_cols=24  Identities=29%  Similarity=0.339  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .++++|+.|+|||||++.+.+-..
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            578999999999999999987643

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.49  E-value=7.9e-05  Score=52.32  Aligned_cols=26  Identities=19%  Similarity=0.080  Sum_probs=22.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFD   35 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~   35 (170)
                      -.++++|++|+|||||+|.+.+...+
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~~~  195 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGLKL  195 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred             CeEEEECCCCCcHHHHHHHhcccccc
Confidence            35789999999999999999976543

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.49  E-value=7.8e-05  Score=51.15  Aligned_cols=24  Identities=17%  Similarity=0.185  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .++++|+.|+|||||++.+.+-..
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~~   58 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFLK   58 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999987543

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.49  E-value=6.5e-05  Score=51.73  Aligned_cols=24  Identities=17%  Similarity=0.260  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .++++|+.|+|||||++.+.+-..
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~~   75 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLED   75 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC
Confidence            478999999999999999887543

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.49  E-value=9e-05  Score=48.94  Aligned_cols=24  Identities=25%  Similarity=0.202  Sum_probs=21.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      +...|++.|++||||||+.+.|..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            346899999999999999999875

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.48  E-value=5.6e-05  Score=48.82  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=20.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .-.++++|++|+|||||++.+.+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999988754

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.48  E-value=7.5e-05  Score=49.01  Aligned_cols=21  Identities=24%  Similarity=0.449  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~   31 (170)
                      .|+++|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999998875

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.48  E-value=6.5e-05  Score=52.76  Aligned_cols=22  Identities=23%  Similarity=0.463  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~   31 (170)
                      =.++|+|++|+|||||++.|.+
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhh
Confidence            4689999999999999998874

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.47  E-value=8.6e-05  Score=48.32  Aligned_cols=23  Identities=17%  Similarity=0.310  Sum_probs=20.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ...|+++|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999999875

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.47  E-value=7.1e-05  Score=51.11  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999988754

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.47  E-value=9e-05  Score=47.64  Aligned_cols=23  Identities=22%  Similarity=0.342  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ..|+++|++||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999998864

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.47  E-value=9.5e-05  Score=50.42  Aligned_cols=24  Identities=13%  Similarity=0.169  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .++++|+.|+|||||++.+.+-..
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~~   60 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFYI   60 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            578999999999999999887543

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.47  E-value=8.7e-05  Score=50.38  Aligned_cols=24  Identities=17%  Similarity=0.228  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .++++|+.|+|||||++.+.+-..
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~~   57 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999987543

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.47  E-value=8.9e-05  Score=50.83  Aligned_cols=24  Identities=17%  Similarity=0.144  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .++++|+.|+|||||++.+.+-..
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~~   66 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLIK   66 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            578999999999999999987543

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.46  E-value=7.3e-05  Score=48.21  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .-++++|++|+|||||++++...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            35789999999999999999864

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.46  E-value=7.5e-05  Score=51.03  Aligned_cols=22  Identities=18%  Similarity=0.292  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .++++|+.|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999875

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.46  E-value=8.1e-05  Score=51.16  Aligned_cols=23  Identities=17%  Similarity=0.236  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            57999999999999999998753

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.46  E-value=0.0001  Score=50.10  Aligned_cols=24  Identities=21%  Similarity=0.322  Sum_probs=21.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      +.++|++.|++||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            568999999999999999999864

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.45  E-value=8.6e-05  Score=49.24  Aligned_cols=23  Identities=35%  Similarity=0.530  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ++|+++|+|||||+|...+|...
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999988743

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.45  E-value=2.1e-05  Score=55.28  Aligned_cols=24  Identities=29%  Similarity=0.466  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      -.++++|++|+|||||+|.+.+..
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CEEEEECCCCCCHHHHHHHhcccc
Confidence            478999999999999999998754

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=97.45  E-value=0.001  Score=44.55  Aligned_cols=152  Identities=10%  Similarity=0.050  Sum_probs=74.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEE-ec-CChhh----hhh-hhhhh
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW-DT-AGQER----FRS-LIPSY   78 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-D~-~g~~~----~~~-~~~~~   78 (170)
                      +.+++-|++.|+++.||++|++++++.....  ..    ......+........+-|| |. +....    |.+ ..+..
T Consensus        26 P~nkilvl~~~~~~~~~~~~~~~lf~~~~~~--~~----i~k~v~w~TKYYsa~V~IwVDe~~~l~~W~~EF~SdEA~EV   99 (233)
T 3uc9_A           26 PQNKILVLSDHPHNFLKTQFLQDLFHCSSTG--IS----IVKDQTWENRYYKVHFDLYIDSCKDIPVWVEEFITPECEPL   99 (233)
T ss_dssp             CCCEEEEEEEGGGHHHHHHHHHHHHCCCCCS--SC----EEEEEEEECSSCEEEEEEEEEEESCHHHHHHHHTSGGGHHH
T ss_pred             CCCceEEEecCcccccHHHHHHHHhcccccc--cc----cccCCeeeeceEEEEcceEEEecCCHHHHHHHhcCHHHHHH
Confidence            5567777777999999999999999874211  11    1222333444555556554 33 32211    111 11111


Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecC----
Q 030856           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK----  154 (170)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~----  154 (170)
                      .....++|+|++...++..+.+...    ......+..+++|+.-.+......-..++....+..+|+.++.....    
T Consensus       100 R~viggII~~f~~p~~~~~~~i~~~----~~~~~~dg~~v~Vg~~~~~~~~~~de~~e~~~~~~~~GfE~V~~~~~~~~~  175 (233)
T 3uc9_A          100 RNVMAGIILITDIRQTKPQELLHQF----MIAAHRNTFVVLVNVNEEVEQDEIDELNEIWSNAFTNVIEFVNWKRSKPTV  175 (233)
T ss_dssp             HHTEEEEEEEECHHHHCGGGTHHHH----HHHSCTTCEEEEEECCTTCCHHHHHHHHHHHTTSSSSCEEEEECC----CC
T ss_pred             HHhcceEEEEEeCCCcchHHHHHHH----hccCCCCceEEEEecCCccCCCchhhHHHHHHHHHhcCeEEEEecCCCccc
Confidence            2234789999986554444443332    22233344555554333211100001122222234467788865321    


Q ss_pred             ------CCCChHHHHHHHH
Q 030856          155 ------AGFNIKGCSPTIR  167 (170)
Q Consensus       155 ------~~~~v~~~~~~l~  167 (170)
                            +..|++.+.+.|-
T Consensus       176 ~~ne~gE~~Gi~RI~E~Le  194 (233)
T 3uc9_A          176 NHNDYGEKLGLDRIQEIID  194 (233)
T ss_dssp             CBCTTSCBCHHHHHHHHHH
T ss_pred             ccccccchhCHHHHHHHHH
Confidence                  2335677766653

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.45  E-value=8.8e-05  Score=48.77  Aligned_cols=22  Identities=23%  Similarity=0.374  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~   31 (170)
                      -.|+++|++||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4789999999999999998874

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.45  E-value=9.4e-05  Score=48.79  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~   31 (170)
                      +.|+++|++||||||+.+.+..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999999976

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.45  E-value=8.5e-05  Score=49.86  Aligned_cols=23  Identities=22%  Similarity=0.411  Sum_probs=20.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ...|+++|++||||||+.+.|..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999998864

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.44  E-value=7.4e-05  Score=49.18  Aligned_cols=23  Identities=22%  Similarity=0.251  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ..|+++|++||||||+.+.|...
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988653

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.44  E-value=9.1e-05  Score=48.14  Aligned_cols=21  Identities=19%  Similarity=0.316  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~   31 (170)
                      .|++.|++||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998875

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.44  E-value=0.00011  Score=51.91  Aligned_cols=26  Identities=15%  Similarity=0.208  Sum_probs=22.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ..+..-|+|+|++|||||||++.+.+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHh
Confidence            34567899999999999999998775

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.44  E-value=8.1e-05  Score=51.36  Aligned_cols=22  Identities=14%  Similarity=0.267  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .++++|+.|+|||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999875

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.44  E-value=0.00012  Score=47.62  Aligned_cols=23  Identities=17%  Similarity=0.250  Sum_probs=20.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ...|+++|.+||||||+.+.|..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.43  E-value=5.4e-05  Score=50.27  Aligned_cols=22  Identities=23%  Similarity=0.164  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .++++|+.|+|||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998875

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.43  E-value=8.4e-05  Score=50.88  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .++++|+.|+|||||++.+.+-..
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~~   56 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIHR   56 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999987643

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.43  E-value=8.6e-05  Score=49.35  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ++|+++|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.42  E-value=0.00012  Score=50.89  Aligned_cols=24  Identities=21%  Similarity=0.295  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .++++|+.|+|||||++.+.+-..
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~~   72 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYEP   72 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            578999999999999999887543

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.42  E-value=0.00013  Score=48.17  Aligned_cols=25  Identities=16%  Similarity=0.271  Sum_probs=21.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      +...|+++|++|+||||+.+.|...
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999999999998864

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.42  E-value=0.00012  Score=51.09  Aligned_cols=26  Identities=19%  Similarity=0.249  Sum_probs=22.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ......|+++|++||||||+.+++..
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999999874

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.42  E-value=0.00011  Score=50.87  Aligned_cols=24  Identities=13%  Similarity=0.159  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .++|+|+.|+|||||++.+.+-..
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~~   70 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLYQ   70 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            578999999999999999887543

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.42  E-value=8.8e-05  Score=51.16  Aligned_cols=23  Identities=17%  Similarity=0.225  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999988754

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.41  E-value=0.00012  Score=48.19  Aligned_cols=25  Identities=12%  Similarity=0.086  Sum_probs=21.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      +...|+++|++|+||||+.+.+.+.
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3467899999999999999988753

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.41  E-value=0.00012  Score=48.11  Aligned_cols=25  Identities=28%  Similarity=0.256  Sum_probs=21.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      ...|+++|++||||||+.+.|....
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4679999999999999999988653

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.41  E-value=0.00014  Score=50.75  Aligned_cols=26  Identities=19%  Similarity=0.212  Sum_probs=21.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ..+...|+|+|++|||||||.+.+..
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34568899999999999999987653

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.41  E-value=0.00015  Score=46.97  Aligned_cols=26  Identities=27%  Similarity=0.178  Sum_probs=22.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .+...|+++|.+|+||||+.+.+...
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            45678999999999999999988753

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.40  E-value=5.1e-05  Score=51.10  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=15.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh-cC
Q 030856           10 YKLVFLGDQSVGKTSIITRFM-YD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~-~~   32 (170)
                      --++++|++|+|||||++.+. +.
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            358999999999999999998 54

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.40  E-value=0.00013  Score=51.26  Aligned_cols=24  Identities=29%  Similarity=0.564  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      -.++++|++|+|||||+|.+. ...
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            467999999999999999998 543

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.40  E-value=0.00013  Score=51.60  Aligned_cols=26  Identities=19%  Similarity=0.250  Sum_probs=21.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ..+++-|+|+|++|||||||++.+.+
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999988753

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.40  E-value=0.00012  Score=48.89  Aligned_cols=23  Identities=17%  Similarity=0.371  Sum_probs=20.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      .+.|+++|++||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.38  E-value=0.00012  Score=46.62  Aligned_cols=22  Identities=14%  Similarity=0.285  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ++|++.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998875

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.38  E-value=0.00014  Score=50.12  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998765

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.38  E-value=0.00014  Score=48.11  Aligned_cols=24  Identities=21%  Similarity=0.192  Sum_probs=21.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      +...|++.|.+||||||+.+.|..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            457899999999999999998874

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.38  E-value=0.00013  Score=49.89  Aligned_cols=27  Identities=15%  Similarity=0.290  Sum_probs=21.3

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ...+.+.|+|.|++||||||+.+.|..
T Consensus        18 ~~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           18 NGGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            344567899999999999999988765

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.37  E-value=0.00013  Score=49.52  Aligned_cols=24  Identities=17%  Similarity=0.364  Sum_probs=21.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      +...|+|+|+.|||||||++.+.+
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999998876

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.37  E-value=0.00018  Score=48.05  Aligned_cols=25  Identities=28%  Similarity=0.424  Sum_probs=19.3

Q ss_pred             Ccee-EEEEcCCCCCHHHHHHHHhcC
Q 030856            8 AKYK-LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~-i~i~G~~~~GKStll~~l~~~   32 (170)
                      ++.+ |+++|+|||||+|....|...
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3444 566899999999999988743

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.36  E-value=9.7e-05  Score=49.41  Aligned_cols=22  Identities=18%  Similarity=0.215  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      -++++|++|+|||||++.+.+.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999874

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.36  E-value=0.00013  Score=47.25  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999998864

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.36  E-value=0.00014  Score=47.44  Aligned_cols=24  Identities=13%  Similarity=0.246  Sum_probs=20.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      +...|+++|++||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998864

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.35  E-value=0.00064  Score=42.18  Aligned_cols=24  Identities=8%  Similarity=0.159  Sum_probs=20.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ...|++.|++|+|||++.+.+...
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCcEEEECCCCccHHHHHHHHHHh
Confidence            457999999999999999987754

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.34  E-value=5e-05  Score=48.87  Aligned_cols=22  Identities=41%  Similarity=0.558  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .++|+|++|+|||||++.+.+-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998854

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.33  E-value=0.00016  Score=47.43  Aligned_cols=25  Identities=12%  Similarity=0.109  Sum_probs=22.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      +...|+|+|++||||||+.+.|...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            4578999999999999999998865

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.33  E-value=0.00013  Score=46.83  Aligned_cols=21  Identities=24%  Similarity=0.485  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~   31 (170)
                      +|+++|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999998864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.32  E-value=0.00015  Score=48.57  Aligned_cols=22  Identities=14%  Similarity=0.187  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~   31 (170)
                      +.|+++|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998864

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.32  E-value=8.4e-05  Score=52.27  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      =.++|+|+.|+|||||++.+.+-.
T Consensus        81 e~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           81 QTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             CEEEEECCCCchHHHHHHHHHcCC
Confidence            368999999999999999888643

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.31  E-value=0.00012  Score=52.58  Aligned_cols=22  Identities=14%  Similarity=0.296  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .++++|+.|||||||++.+.+.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7899999999999999998753

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.31  E-value=0.00019  Score=47.21  Aligned_cols=25  Identities=20%  Similarity=0.219  Sum_probs=21.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      .+...|+++|++|+|||||++.+.+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457799999999999999998864

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.31  E-value=8.8e-05  Score=47.89  Aligned_cols=24  Identities=21%  Similarity=0.110  Sum_probs=16.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      +...|++.|.+||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999864

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.31  E-value=0.00011  Score=53.04  Aligned_cols=25  Identities=20%  Similarity=0.353  Sum_probs=22.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      .-+++|+|++|+|||||++.+.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999988753

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.30  E-value=0.00014  Score=48.53  Aligned_cols=23  Identities=17%  Similarity=0.200  Sum_probs=20.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ...|+++|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998864

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.30  E-value=0.00013  Score=50.44  Aligned_cols=22  Identities=18%  Similarity=0.332  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .++++|++|+|||||++.+.+.
T Consensus        46 GvlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           46 GVLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3999999999999999999864

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.29  E-value=0.00015  Score=50.64  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57999999999999999988653

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.29  E-value=9.8e-05  Score=46.36  Aligned_cols=24  Identities=13%  Similarity=0.379  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      -.++++|++|+|||+|++.+.+..
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            358899999999999999988643

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.29  E-value=0.00019  Score=48.33  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=21.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ...+|+++|.+||||||+.+.|..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            447899999999999999998864

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.29  E-value=0.00022  Score=49.50  Aligned_cols=24  Identities=29%  Similarity=0.380  Sum_probs=21.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~   30 (170)
                      .+.+.|+|+|++||||||+.+.|.
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            446789999999999999999886

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.28  E-value=0.00018  Score=46.14  Aligned_cols=23  Identities=17%  Similarity=0.365  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ..++++|++|||||||+.++...
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            35889999999999999998853

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.28  E-value=0.00017  Score=51.73  Aligned_cols=24  Identities=21%  Similarity=0.295  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      -++++|+.|+|||||++.+.+-..
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCchHHHHHHHHhcCCC
Confidence            468999999999999999987544

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.28  E-value=0.00018  Score=46.82  Aligned_cols=21  Identities=24%  Similarity=0.336  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~   31 (170)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998875

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.27  E-value=0.00015  Score=50.98  Aligned_cols=23  Identities=26%  Similarity=0.382  Sum_probs=20.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      .-.++++|+.||||||+++.+.+
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            45789999999999999999874

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.27  E-value=0.0002  Score=50.46  Aligned_cols=25  Identities=20%  Similarity=0.292  Sum_probs=21.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      .+...|+|+|++|||||||++.+.+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999998876

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.26  E-value=0.00023  Score=47.41  Aligned_cols=23  Identities=22%  Similarity=0.489  Sum_probs=20.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ++.|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999875

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.26  E-value=0.00015  Score=51.64  Aligned_cols=25  Identities=24%  Similarity=0.235  Sum_probs=21.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      -.++++|+.|+|||||++.+.+-..
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCc
Confidence            3689999999999999999987643

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.26  E-value=0.00017  Score=48.03  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=20.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      .+.|+++|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.25  E-value=0.00016  Score=49.44  Aligned_cols=25  Identities=20%  Similarity=0.175  Sum_probs=21.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      .....|+++|++||||||+.+.|..
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4457899999999999999998865

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.25  E-value=0.00017  Score=49.22  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .++++|++|+|||||++.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999998864

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.25  E-value=0.00022  Score=48.71  Aligned_cols=22  Identities=14%  Similarity=0.199  Sum_probs=20.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 030856            9 KYKLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~   30 (170)
                      ...|+|+|++||||||+++.+.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999987

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.25  E-value=0.00017  Score=51.79  Aligned_cols=24  Identities=21%  Similarity=0.171  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      -++++|+.|+|||||++.+.+-..
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~   54 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIYK   54 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEcCCCchHHHHHHHHHCCCC
Confidence            478999999999999999887543

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.25  E-value=0.00015  Score=52.25  Aligned_cols=25  Identities=24%  Similarity=0.405  Sum_probs=21.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      -.++++|+.|+|||||++.+.+-..
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4789999999999999999987543

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.25  E-value=0.00022  Score=51.20  Aligned_cols=24  Identities=25%  Similarity=0.239  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      -++++|+.|+|||||++.+.+-..
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~~   66 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLER   66 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            468999999999999999887543

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.24  E-value=0.00022  Score=51.25  Aligned_cols=24  Identities=17%  Similarity=0.191  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      -++++|+.|+|||||++.+.+-..
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~~   79 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLER   79 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEcCCCchHHHHHHHHhcCCC
Confidence            478999999999999999887543

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.24  E-value=0.00018  Score=52.01  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      -++++|+.|+|||||++.+.+-..
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEcCCCchHHHHHHHHHcCCC
Confidence            468999999999999999987543

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.24  E-value=0.0002  Score=46.76  Aligned_cols=23  Identities=13%  Similarity=0.238  Sum_probs=20.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ...|+++|++||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998875

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.24  E-value=0.0002  Score=46.12  Aligned_cols=24  Identities=33%  Similarity=0.558  Sum_probs=20.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .-.+++.|++|+|||+|++.+...
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999988754

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.24  E-value=0.00018  Score=52.07  Aligned_cols=23  Identities=17%  Similarity=0.258  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      =.++++|++|||||||++.+.+.
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46899999999999999998863

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.23  E-value=0.00018  Score=50.55  Aligned_cols=23  Identities=17%  Similarity=0.287  Sum_probs=20.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      .--++++|+.|+||||+++.+.+
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            35689999999999999998875

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.22  E-value=0.00024  Score=51.08  Aligned_cols=24  Identities=17%  Similarity=0.203  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .++++|+.|+|||||++.+.+-..
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~   54 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIYK   54 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCchHHHHHHHHhcCCC
Confidence            468999999999999999987543

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.22  E-value=0.0002  Score=51.78  Aligned_cols=24  Identities=21%  Similarity=0.263  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      -++++|+.|+|||||++.+.+-..
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCC
Confidence            468999999999999999987643

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.22  E-value=0.0002  Score=51.70  Aligned_cols=24  Identities=29%  Similarity=0.283  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .++++|+.|+|||||++.+.+-..
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~~   62 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLEE   62 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC
Confidence            468999999999999999887543

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.21  E-value=0.00023  Score=48.02  Aligned_cols=24  Identities=17%  Similarity=0.225  Sum_probs=20.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      +++.|+|.|++|+||||+.+.+..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998863

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.20  E-value=0.00029  Score=45.37  Aligned_cols=24  Identities=17%  Similarity=0.173  Sum_probs=20.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      +...|+++|.+||||||+.+.|..
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346789999999999999998875

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.20  E-value=0.00021  Score=48.87  Aligned_cols=21  Identities=19%  Similarity=0.284  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~   31 (170)
                      .|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998864

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.19  E-value=0.00028  Score=48.43  Aligned_cols=22  Identities=18%  Similarity=0.336  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ..|+++|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            5789999999999999998875

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.18  E-value=0.00022  Score=46.10  Aligned_cols=21  Identities=33%  Similarity=0.430  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~   31 (170)
                      .|+++|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999988864

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.17  E-value=0.00028  Score=47.44  Aligned_cols=26  Identities=19%  Similarity=0.364  Sum_probs=22.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .+..-|+|.|+.|+||||+++.+.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            34567999999999999999998865

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.17  E-value=8e-05  Score=49.34  Aligned_cols=21  Identities=14%  Similarity=0.324  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~   31 (170)
                      -|+|+|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999874

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.17  E-value=0.00021  Score=52.41  Aligned_cols=23  Identities=13%  Similarity=0.228  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      .++|+|+.|||||||++.+.+..
T Consensus       169 ii~I~GpnGSGKTTlL~allg~l  191 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQEL  191 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhhc
Confidence            58999999999999999988643

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.16  E-value=0.00021  Score=50.82  Aligned_cols=23  Identities=17%  Similarity=0.353  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      -.++++|++|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999998864

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.16  E-value=0.00027  Score=45.11  Aligned_cols=21  Identities=14%  Similarity=0.341  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~   31 (170)
                      .|+++|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.16  E-value=0.00022  Score=53.68  Aligned_cols=24  Identities=21%  Similarity=0.456  Sum_probs=21.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      -.++++|++|||||||++.+.+--
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            459999999999999999998754

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.15  E-value=0.00025  Score=49.09  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .++++|++|+|||||++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            3899999999999999998864

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.14  E-value=0.00033  Score=44.61  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~   31 (170)
                      -+|++.|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998764

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.12  E-value=0.00028  Score=45.48  Aligned_cols=21  Identities=19%  Similarity=0.393  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~   31 (170)
                      -.+|+|+.|+|||||++++..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999999864

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=97.12  E-value=0.00026  Score=51.44  Aligned_cols=22  Identities=23%  Similarity=0.549  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .++++|+.|+|||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4789999999999999998863

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=97.11  E-value=0.00022  Score=51.05  Aligned_cols=24  Identities=25%  Similarity=0.264  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      -++++|+.|+|||||++.+.+-..
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~~   51 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFHV   51 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCccHHHHHHHHHcCCC
Confidence            478999999999999999987543

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=97.11  E-value=0.0013  Score=48.51  Aligned_cols=23  Identities=13%  Similarity=0.195  Sum_probs=19.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~   30 (170)
                      +-.-|+|+|+.++|||+|+|.++
T Consensus        66 ~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           66 EVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             ceEEEEEECCCCCchhHHHHHHH
Confidence            44566799999999999999654

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.07  E-value=0.00032  Score=46.85  Aligned_cols=21  Identities=24%  Similarity=0.415  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~   31 (170)
                      -++++|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999998874

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.07  E-value=0.00031  Score=50.49  Aligned_cols=23  Identities=17%  Similarity=0.287  Sum_probs=20.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      .--++++|+.|+||||+++.+.+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Confidence            45689999999999999998875

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.07  E-value=0.0004  Score=43.53  Aligned_cols=19  Identities=21%  Similarity=0.571  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 030856           12 LVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~   30 (170)
                      .+|+|+.|+||||+++++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4799999999999999976

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.07  E-value=0.00046  Score=45.21  Aligned_cols=26  Identities=12%  Similarity=0.155  Sum_probs=22.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      -....|+++|.+||||||+.+.|...
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHh
Confidence            35688999999999999999988753

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.05  E-value=0.0003  Score=45.22  Aligned_cols=24  Identities=38%  Similarity=0.623  Sum_probs=20.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .-.+++.|++|+|||+|++.+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999988754

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.05  E-value=0.00049  Score=45.57  Aligned_cols=24  Identities=13%  Similarity=0.213  Sum_probs=20.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      +...|+++|.+|+||||+.+.+..
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            346789999999999999998764

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.04  E-value=0.00061  Score=45.88  Aligned_cols=25  Identities=24%  Similarity=0.363  Sum_probs=21.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      +..-|++.|++|+||||+++.+...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4567999999999999999998764

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.04  E-value=0.00047  Score=47.05  Aligned_cols=24  Identities=17%  Similarity=0.279  Sum_probs=20.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      +..++++|++|+|||+|++.+.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            346999999999999999998754

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.04  E-value=0.00039  Score=46.60  Aligned_cols=25  Identities=16%  Similarity=0.202  Sum_probs=21.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ..-.+++.|++|+|||+|++.+...
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3467899999999999999988753

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.04  E-value=0.00041  Score=45.50  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ..+++.|++|+|||+|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            67999999999999999988754

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.04  E-value=0.00054  Score=48.48  Aligned_cols=22  Identities=18%  Similarity=0.356  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ..|+|+|++|||||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998774

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.03  E-value=0.00036  Score=52.14  Aligned_cols=23  Identities=26%  Similarity=0.541  Sum_probs=20.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      .--++|+|+.|+|||||++.|.+
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHH
Confidence            45689999999999999998875

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.03  E-value=0.00055  Score=47.81  Aligned_cols=25  Identities=16%  Similarity=0.124  Sum_probs=20.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .+..+++.|+||+|||+|.+.+...
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3456788899999999999998754

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.02  E-value=0.00038  Score=47.52  Aligned_cols=23  Identities=17%  Similarity=0.203  Sum_probs=20.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      .-.|+++|++|+||||+.+.+..
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=97.01  E-value=0.00022  Score=51.19  Aligned_cols=24  Identities=21%  Similarity=0.288  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .++++|+.|+|||||++.+.+-..
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~~   56 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLDV   56 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            478999999999999999987543

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.00  E-value=0.00054  Score=48.77  Aligned_cols=22  Identities=23%  Similarity=0.434  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~   31 (170)
                      .-|+|+|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999988775

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.99  E-value=0.00041  Score=49.65  Aligned_cols=25  Identities=12%  Similarity=0.259  Sum_probs=21.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      =+++++|+.|+|||||++.+.+...
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3689999999999999999998643

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.99  E-value=0.00035  Score=51.93  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      -.++|+|+.|+|||||++.+.+-
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCc
Confidence            46899999999999999998864

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.98  E-value=0.0004  Score=48.48  Aligned_cols=22  Identities=9%  Similarity=0.305  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      -++|+|++|+|||||+..+.+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999988754

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.97  E-value=0.00055  Score=46.04  Aligned_cols=25  Identities=20%  Similarity=0.292  Sum_probs=20.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      -..++++++|+|||||||+..+|..
T Consensus         6 ~~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            6 HHHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccccceeeECCCCCCHHHHHHHHHH
Confidence            3568999999999999999998764

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.97  E-value=0.00031  Score=49.70  Aligned_cols=23  Identities=17%  Similarity=0.391  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      -++++|+.|+|||||++.+.+..
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEEecCCCCHHHHHHHHHhhc
Confidence            45788999999999999999653

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.96  E-value=0.00059  Score=47.67  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ..|+++|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.94  E-value=0.00066  Score=45.79  Aligned_cols=26  Identities=15%  Similarity=0.267  Sum_probs=21.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ..+...|+++|++|+||||+.+.+..
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999998874

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.94  E-value=0.00051  Score=45.52  Aligned_cols=21  Identities=19%  Similarity=0.158  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~   31 (170)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            579999999999999999987

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.93  E-value=0.00053  Score=46.17  Aligned_cols=22  Identities=23%  Similarity=0.303  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      -++++|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5789999999999999999874

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.93  E-value=0.00079  Score=51.05  Aligned_cols=25  Identities=12%  Similarity=0.219  Sum_probs=21.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      =.++++|+.|+|||||++.+.+-..
T Consensus        48 e~~~LvG~NGaGKSTLlk~l~Gl~~   72 (538)
T 1yqt_A           48 MVVGIVGPNGTGKSTAVKILAGQLI   72 (538)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3589999999999999999987543

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.92  E-value=0.00066  Score=42.20  Aligned_cols=26  Identities=8%  Similarity=0.054  Sum_probs=22.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      ....|++.|++|+|||++.+.+....
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            44679999999999999999987653

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.91  E-value=0.00052  Score=49.66  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=20.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      .-.++++|++|+|||||++.+.+
T Consensus       169 ~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          169 KRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            34789999999999999999885

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.90  E-value=0.00077  Score=51.08  Aligned_cols=25  Identities=28%  Similarity=0.400  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFD   35 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~   35 (170)
                      -++++|+.|+|||||++.+.+-..+
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~~p   51 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEIIP   51 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCCC
Confidence            4799999999999999999985443

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.86  E-value=0.00061  Score=50.83  Aligned_cols=21  Identities=19%  Similarity=0.411  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~   31 (170)
                      .++++|+.|+|||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999998875

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.85  E-value=0.00077  Score=51.60  Aligned_cols=23  Identities=17%  Similarity=0.277  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhcc
Confidence            68999999999999999988754

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.85  E-value=0.00085  Score=46.93  Aligned_cols=25  Identities=20%  Similarity=0.409  Sum_probs=20.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      .....+++.|++|+|||++.+.+..
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3445799999999999999986654

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.85  E-value=0.00073  Score=46.74  Aligned_cols=25  Identities=16%  Similarity=0.283  Sum_probs=21.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ....+++.|++|+|||+|++.+...
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3456999999999999999998754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.85  E-value=0.0009  Score=51.44  Aligned_cols=25  Identities=16%  Similarity=0.287  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFD   35 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~   35 (170)
                      .++++|+.|+|||||++.+.+-..+
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll~P  129 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQKP  129 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCCC
Confidence            5799999999999999999875443

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.84  E-value=0.00064  Score=50.23  Aligned_cols=24  Identities=13%  Similarity=0.260  Sum_probs=21.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      =+++|+|+.|+|||||++.+.+..
T Consensus       158 q~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          158 QRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhccc
Confidence            368999999999999999998764

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.84  E-value=0.0011  Score=48.65  Aligned_cols=25  Identities=20%  Similarity=0.296  Sum_probs=21.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ...-|+++|++||||||+.++|...
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3466888999999999999998753

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.84  E-value=0.00089  Score=51.28  Aligned_cols=24  Identities=21%  Similarity=0.272  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .++++|+.|+|||||++.+.+-..
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~~  394 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFYD  394 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            689999999999999999887543

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.84  E-value=0.00054  Score=45.24  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=18.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~   31 (170)
                      -.+++.|+||+|||+++.++..
T Consensus        59 n~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999887764

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.84  E-value=0.00083  Score=45.76  Aligned_cols=25  Identities=20%  Similarity=0.280  Sum_probs=21.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ....+++.|++|+|||++++.+...
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3456899999999999999998753

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.84  E-value=0.0007  Score=48.84  Aligned_cols=19  Identities=26%  Similarity=0.400  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 030856           12 LVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~   30 (170)
                      .+|+|+.|+|||||++++.
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4699999999999999977

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.83  E-value=0.00072  Score=47.09  Aligned_cols=24  Identities=21%  Similarity=0.303  Sum_probs=21.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .-.+++.|++|+|||++++.+...
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            457999999999999999998864

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.82  E-value=0.0011  Score=47.19  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .-|+|+|++|||||+|...|...
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999998864

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.82  E-value=0.00095  Score=43.83  Aligned_cols=21  Identities=24%  Similarity=0.325  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~   31 (170)
                      .|+|.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.81  E-value=0.00078  Score=44.97  Aligned_cols=21  Identities=38%  Similarity=0.520  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~   31 (170)
                      .+++.|++|+|||+|++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998875

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.81  E-value=0.00081  Score=44.32  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .+++.|++|+|||+|++.+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988753

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.80  E-value=0.0012  Score=45.43  Aligned_cols=26  Identities=15%  Similarity=0.286  Sum_probs=22.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .....+++.|++|+|||+|++.+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            45578999999999999999998764

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.79  E-value=0.0012  Score=44.34  Aligned_cols=29  Identities=17%  Similarity=0.135  Sum_probs=22.1

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            3 PVSALAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         3 ~~~~~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      |+...+..-|++.|.+|+||||+++.+..
T Consensus        15 ~~~~~~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           15 QTQGPGSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             ----CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34555677899999999999999998874

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.79  E-value=0.0011  Score=50.88  Aligned_cols=24  Identities=17%  Similarity=0.245  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .++++|+.|+|||||++.+.+...
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll~  142 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQLI  142 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhCCCC
Confidence            579999999999999999987543

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.77  E-value=0.0012  Score=46.45  Aligned_cols=24  Identities=17%  Similarity=0.282  Sum_probs=20.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      +.-|+|+|++|||||+|...+...
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHHh
Confidence            345788999999999999998743

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.77  E-value=0.00085  Score=44.55  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=20.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ++.|+++|++|+||||+.+.+..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999988765

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.76  E-value=0.00079  Score=47.58  Aligned_cols=23  Identities=17%  Similarity=0.299  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      -.+++.|++|+|||+|++.+...
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999998753

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.75  E-value=0.0009  Score=46.89  Aligned_cols=24  Identities=21%  Similarity=0.375  Sum_probs=20.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .-.+++.|++|+|||+|++.+...
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHHH
Confidence            346899999999999999998864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.74  E-value=0.0012  Score=50.09  Aligned_cols=25  Identities=20%  Similarity=0.290  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFD   35 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~   35 (170)
                      .++++|+.|+|||||++.+.+-..+
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~~p  320 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEITA  320 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4789999999999999999975443

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.73  E-value=0.001  Score=43.73  Aligned_cols=25  Identities=20%  Similarity=0.349  Sum_probs=21.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      ...|+|+|++|+|||+|...|....
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhC
Confidence            4568999999999999999998654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.73  E-value=0.0014  Score=49.80  Aligned_cols=24  Identities=17%  Similarity=0.261  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .++|+|+.|+|||||++.+.+-..
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~~  337 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVEE  337 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            579999999999999999998644

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.72  E-value=0.00073  Score=51.70  Aligned_cols=24  Identities=21%  Similarity=0.239  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      =.++++|+.|+|||||++.+.+-.
T Consensus       368 ~~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          368 ETVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhcCC
Confidence            368999999999999999887654

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.72  E-value=0.0015  Score=45.67  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      -.+++.|++|+|||++++.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            47999999999999999988764

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.70  E-value=0.0009  Score=46.31  Aligned_cols=21  Identities=10%  Similarity=0.132  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~   31 (170)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            578999999999999998875

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.70  E-value=0.0009  Score=46.85  Aligned_cols=85  Identities=13%  Similarity=0.051  Sum_probs=47.1

Q ss_pred             EEEEEEecCChhhhhhh-h---hhhhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcc
Q 030856           58 VRLQLWDTAGQERFRSL-I---PSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~-~---~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~  131 (170)
                      +.+.+.||+|....... .   ...+.  ..+.+++++|.+..  ...+..+...+.   .-+ ..-+|.||.|....  
T Consensus       183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~-~~giVltk~D~~~~--  254 (296)
T 2px0_A          183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVP-VNQYIFTKIDETTS--  254 (296)
T ss_dssp             SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSC-CCEEEEECTTTCSC--
T ss_pred             CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCC-CCEEEEeCCCcccc--
Confidence            46899999996643221 1   12222  36788899987642  233333322222   111 23455699996432  


Q ss_pred             cCHHHHHHHHHhcCCeEEEee
Q 030856          132 VSIEEGEAKSRELNVMFIETS  152 (170)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~S  152 (170)
                        ...+...+...++++..++
T Consensus       255 --~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          255 --LGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             --CHHHHHHHHTCSCCCSEEC
T ss_pred             --hhHHHHHHHHHCcCEEEEE
Confidence              2356667777888765554

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.70  E-value=0.0014  Score=50.33  Aligned_cols=25  Identities=16%  Similarity=0.242  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFD   35 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~   35 (170)
                      .++++|+.|+|||||++.+.+-..+
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~~p  408 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVEEP  408 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4799999999999999999986443

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.70  E-value=0.00091  Score=51.40  Aligned_cols=25  Identities=28%  Similarity=0.336  Sum_probs=21.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      =.++++|+.|+|||||++.+.+-..
T Consensus       382 ~~~~ivG~sGsGKSTll~~l~g~~~  406 (598)
T 3qf4_B          382 QKVALVGPTGSGKTTIVNLLMRFYD  406 (598)
T ss_dssp             CEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCcC
Confidence            3689999999999999999886543

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.69  E-value=0.00086  Score=45.98  Aligned_cols=25  Identities=16%  Similarity=0.220  Sum_probs=21.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      +...|+|.|.+||||||+.+.|...
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999988754

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.68  E-value=0.0013  Score=44.37  Aligned_cols=24  Identities=21%  Similarity=0.376  Sum_probs=20.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ...|++.|..|+||||+++.|...
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            357899999999999999998754

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.66  E-value=0.00099  Score=44.78  Aligned_cols=25  Identities=24%  Similarity=0.267  Sum_probs=18.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      +..-|++.|++|+||||+++.+...
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~   48 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDR   48 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999988743

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.66  E-value=0.0011  Score=46.62  Aligned_cols=86  Identities=15%  Similarity=0.087  Sum_probs=47.6

Q ss_pred             EEEEEEecCChhhhhhhh-------hhhh-----cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 030856           58 VRLQLWDTAGQERFRSLI-------PSYI-----RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD  125 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~-------~~~~-----~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D  125 (170)
                      +.+.+.|+||........       ...+     ...+.+++|.|.+..  .+.+.. ...+....  ++ .-+|.||.|
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~~--~i-~gvVlTk~D  260 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEAV--NV-TGIILTKLD  260 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHHS--CC-CEEEEECGG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhcC--CC-CEEEEeCCC
Confidence            358899999953221111       1111     247889999998632  222221 12232221  22 345569999


Q ss_pred             CCCCcccCHHHHHHHHHhcCCeEEEeec
Q 030856          126 LVEKRQVSIEEGEAKSRELNVMFIETSA  153 (170)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~  153 (170)
                      ...    ....+...+...+.|+..++.
T Consensus       261 ~~~----~gG~~l~~~~~~~~Pi~~i~~  284 (306)
T 1vma_A          261 GTA----KGGITLAIARELGIPIKFIGV  284 (306)
T ss_dssp             GCS----CTTHHHHHHHHHCCCEEEEEC
T ss_pred             Ccc----chHHHHHHHHHHCCCEEEEeC
Confidence            532    223467778888888877754

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.65  E-value=0.00099  Score=47.84  Aligned_cols=24  Identities=17%  Similarity=0.331  Sum_probs=20.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .-.+++.|++|+|||||++.+...
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999998753

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.65  E-value=0.0011  Score=50.89  Aligned_cols=23  Identities=17%  Similarity=0.287  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            68999999999999999887643

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.64  E-value=0.0012  Score=47.55  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      .++|.|++|+|||+|++.+....
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999988643

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.63  E-value=0.0013  Score=43.31  Aligned_cols=19  Identities=21%  Similarity=0.571  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 030856           12 LVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~   30 (170)
                      .+|+|+.|+||||+++++.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            4788999999999999875

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.63  E-value=0.0016  Score=45.87  Aligned_cols=24  Identities=21%  Similarity=0.270  Sum_probs=20.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ..-|+|+|++|||||+|...+...
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHh
Confidence            345889999999999999998754

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.61  E-value=0.001  Score=47.48  Aligned_cols=21  Identities=19%  Similarity=0.384  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030856           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~   32 (170)
                      +++.|++|+||||+++.+.+.
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988763

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.60  E-value=0.0014  Score=45.77  Aligned_cols=24  Identities=29%  Similarity=0.448  Sum_probs=20.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ...+++.|++|+|||++++.+...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999988753

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.59  E-value=0.0018  Score=43.04  Aligned_cols=25  Identities=12%  Similarity=0.169  Sum_probs=21.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ++..-|++.|++|+||||+++.+..
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHH
Confidence            4557789999999999999998864

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.58  E-value=0.0018  Score=49.82  Aligned_cols=24  Identities=29%  Similarity=0.440  Sum_probs=21.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCC
Q 030856           12 LVFLGDQSVGKTSIITRFMYDKFD   35 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~~~~   35 (170)
                      ++++|+.|+|||||++.+.+-..+
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~p  404 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALKP  404 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCCC
Confidence            799999999999999999876543

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.58  E-value=0.0015  Score=46.14  Aligned_cols=24  Identities=13%  Similarity=0.292  Sum_probs=21.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ...+++.|++|+|||+|++++...
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            457999999999999999998754

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.57  E-value=0.0014  Score=44.16  Aligned_cols=21  Identities=24%  Similarity=0.537  Sum_probs=17.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~   31 (170)
                      -++++|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999777653

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.57  E-value=0.0016  Score=47.94  Aligned_cols=25  Identities=20%  Similarity=0.209  Sum_probs=21.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .+-.|++.||||+|||.|.+++.+.
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHH
Confidence            3567999999999999999998864

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.56  E-value=0.0021  Score=46.05  Aligned_cols=24  Identities=17%  Similarity=0.380  Sum_probs=20.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ...+|+++|++|+||||+.+.+..
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHH
Confidence            346799999999999999987653

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.55  E-value=0.00073  Score=47.17  Aligned_cols=24  Identities=13%  Similarity=0.222  Sum_probs=17.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      +.+-|+|.|++||||||+.+.|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            345699999999999999988764

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.55  E-value=0.0015  Score=46.30  Aligned_cols=24  Identities=13%  Similarity=0.271  Sum_probs=21.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .-.+++.|++|+|||+|++++...
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHHH
Confidence            357999999999999999998864

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.53  E-value=0.0014  Score=46.64  Aligned_cols=22  Identities=36%  Similarity=0.591  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ++++.|++|+||||+++.+.+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988764

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.52  E-value=0.0018  Score=43.81  Aligned_cols=26  Identities=23%  Similarity=0.275  Sum_probs=21.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      .++..-|++.|.+|+||||+++.+..
T Consensus        24 ~~~~~~i~~eG~~GsGKsT~~~~l~~   49 (236)
T 3lv8_A           24 AMNAKFIVIEGLEGAGKSTAIQVVVE   49 (236)
T ss_dssp             --CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34556799999999999999998764

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.52  E-value=0.0017  Score=45.63  Aligned_cols=24  Identities=21%  Similarity=0.465  Sum_probs=20.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .-.+.+.|++|+|||+|+.++...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999988753

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.52  E-value=0.0018  Score=47.65  Aligned_cols=24  Identities=17%  Similarity=0.321  Sum_probs=21.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      +--|++.||||+|||+|.+++.+.
T Consensus       206 prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          206 PRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            456999999999999999998853

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.51  E-value=0.0014  Score=47.01  Aligned_cols=23  Identities=17%  Similarity=0.174  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      --+.|+|++|+|||||+..+...
T Consensus       132 ~i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          132 AITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999998864

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.49  E-value=0.0016  Score=46.83  Aligned_cols=25  Identities=16%  Similarity=0.236  Sum_probs=21.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ..-.+++.|++|+|||+|++.+...
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHH
Confidence            3457899999999999999998753

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=96.48  E-value=0.00018  Score=48.43  Aligned_cols=21  Identities=19%  Similarity=0.439  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030856           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~   32 (170)
                      ++|+|+.|+|||||++.+.+-
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~   50 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTA   50 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            468899999999999998864

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.47  E-value=0.002  Score=47.48  Aligned_cols=25  Identities=16%  Similarity=0.230  Sum_probs=21.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .+-.|++.||||+|||+|.+++.+.
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            4567999999999999999998854

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.46  E-value=0.0021  Score=45.58  Aligned_cols=24  Identities=25%  Similarity=0.516  Sum_probs=20.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ...+++.|++|+|||+|++.+...
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            357899999999999999998654

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.43  E-value=0.002  Score=45.98  Aligned_cols=21  Identities=19%  Similarity=0.548  Sum_probs=17.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 030856            9 KYKLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~   30 (170)
                      .++ +|+|+.|+|||||++++.
T Consensus        24 ~~~-~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           24 GIN-LIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             EEE-EEECCTTSSHHHHHHHHH
T ss_pred             CeE-EEECCCCCCHHHHHHHHH
Confidence            344 799999999999999874

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=96.42  E-value=0.0038  Score=41.09  Aligned_cols=31  Identities=26%  Similarity=0.468  Sum_probs=25.4

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      |.+.-..+..-|+|.|.+||||+++.+.+..
T Consensus         3 ~~~~~~~~~~II~itGk~~SGKd~va~~l~~   33 (202)
T 3ch4_B            3 MAPLGGAPRLVLLFSGKRKSGKDFVTEALQS   33 (202)
T ss_dssp             CCTTBCCCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccccccCCCEEEEEECCCCCChHHHHHHHHH
Confidence            5565556778999999999999999887765

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.42  E-value=0.00075  Score=46.29  Aligned_cols=23  Identities=17%  Similarity=0.293  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ..+++.|++|+|||+|++.+...
T Consensus        45 ~~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            34889999999999999998753

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.41  E-value=0.0019  Score=46.36  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      -.+++.|++|+|||++++.+...
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998754

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.41  E-value=0.0017  Score=48.37  Aligned_cols=25  Identities=32%  Similarity=0.508  Sum_probs=21.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ..-+++++|+||+|||++++.+...
T Consensus       200 ~~~~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          200 TKNNPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHH
Confidence            3457899999999999999987754

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.40  E-value=0.0028  Score=45.53  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=21.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ....+++.|++|+|||++.+.+...
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~   74 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARL   74 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999998754

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.40  E-value=0.0019  Score=45.93  Aligned_cols=22  Identities=32%  Similarity=0.551  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .+++.|++|+|||++++.+...
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988754

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.39  E-value=0.0019  Score=47.81  Aligned_cols=23  Identities=22%  Similarity=0.310  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      -.+++.|++|+|||+|++.+.+.
T Consensus       131 ~~lll~Gp~G~GKTtLa~aia~~  153 (440)
T 2z4s_A          131 NPLFIYGGVGLGKTHLLQSIGNY  153 (440)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988753

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.39  E-value=0.0019  Score=48.54  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .++++|++|+|||+|++.+.+.
T Consensus        66 GvLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	170
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	3e-46
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	9e-44
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-43
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-42
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	2e-42
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	4e-42
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	1e-41
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-39
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	2e-39
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	3e-38
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	4e-38
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-36
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	2e-36
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	3e-36
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	4e-35
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	9e-33
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	3e-32
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	6e-32
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	1e-31
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	1e-31
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	2e-31
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	8e-31
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	2e-30
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	5e-30
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	8e-30
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	3e-29
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	1e-28
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	1e-28
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	4e-28
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	7e-28
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	9e-28
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	2e-26
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	2e-26
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-25
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	2e-25
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-25
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	2e-25
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	8e-25
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	8e-25
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	5e-24
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	7e-22
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	1e-21
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	5e-21
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	6e-21
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	7e-21
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-20
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	1e-19
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	1e-19
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	3e-19
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-17
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	3e-17
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	4e-17
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	3e-16
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	3e-16
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	4e-15
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	2e-13
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	9e-09
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	4e-05
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	6e-05
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	8e-04
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	0.001
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	0.002
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	0.002

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  147 bits (371), Expect = 3e-46
 Identities = 65/151 (43%), Positives = 103/151 (68%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  +Y R +   ++VYD+ + +SF N   WI  +     +DV  +++GNK D+ +K
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           RQVS E GE  + +  + F+ETSAKA  N++
Sbjct: 127 RQVSKERGEKLALDYGIKFMETSAKANINVE 157

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (353), Expect = 9e-44
 Identities = 127/151 (84%), Positives = 142/151 (94%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRSLIPSYIRDS+ AVVVYD+ +  SF  T+KWID+VRTERGSDVII+LVGNKTDL +K
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           RQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVK 151

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  140 bits (353), Expect = 1e-43
 Identities = 65/161 (40%), Positives = 105/161 (65%), Gaps = 1/161 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQ+WDTAGQE
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  +Y R +   ++VYD+   ++F N  +W   V      +  ++LVGNK+D+ E 
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ET 121

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           R V+ ++GEA ++EL + FIE+SAK   N+     T+ +LI
Sbjct: 122 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 162

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (347), Expect = 1e-42
 Identities = 63/151 (41%), Positives = 95/151 (62%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ +    V+LQ+WDTAGQE
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R ++  ++ YD+   +SF    +W+ E+     + VI VLVGNK DL E+
Sbjct: 66  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 125

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R+VS +  E  S   ++ ++ETSAK   N++
Sbjct: 126 REVSQQRAEEFSEAQDMYYLETSAKESDNVE 156

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (345), Expect = 2e-42
 Identities = 63/152 (41%), Positives = 98/152 (64%), Gaps = 1/152 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +K++ +GD  VGKT ++ RF    F   T+ +T+GIDF +K + ++   V+LQ+WDTAGQ
Sbjct: 7   FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 66

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           ERFRS+  +Y RD+   +++YDV ++ SF N   W+ E+      DV ++L+GNK D   
Sbjct: 67  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 126

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           +R V  E+GE  ++E  + F+ETSAK G N+ 
Sbjct: 127 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVD 158

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  137 bits (345), Expect = 4e-42
 Identities = 66/161 (40%), Positives = 100/161 (62%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+  VGK+ ++ RF  D + N Y +TIG+DF  KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R S   ++VYDV  ++SF     W+ E+     S V+ +LVGNK DL +K
Sbjct: 67  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 126

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           R V  +  +  +    + F+ETSA    N++    T+ R I
Sbjct: 127 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 167

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (341), Expect = 1e-41
 Identities = 57/151 (37%), Positives = 105/151 (69%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 5   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 64

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R +  +Y R +  A++VYD+A   ++ N  +W+ E+R    S+++I+LVGNK+DL   
Sbjct: 65  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 124

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  +E  A + + N+ FIETSA    N++
Sbjct: 125 RAVPTDEARAFAEKNNLSFIETSALDSTNVE 155

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (327), Expect = 1e-39
 Identities = 55/151 (36%), Positives = 97/151 (64%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   KF      TIG++F ++ + +  + ++LQ+WDTAGQE
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R ++ A++VYD+  R ++ + S W+ + R     + +I+L+GNK DL  +
Sbjct: 65  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 124

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V+ EE +  + E  ++F+E SAK G N++
Sbjct: 125 RDVTYEEAKQFAEENGLLFLEASAKTGENVE 155

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  129 bits (325), Expect = 2e-39
 Identities = 58/151 (38%), Positives = 95/151 (62%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++LQ+WDTAGQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +   +++YD+ + +SF     W  +++T    +  ++LVGNK D+ ++
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R VS E G   +  L   F E SAK   N+K
Sbjct: 126 RVVSSERGRQLADHLGFEFFEASAKDNINVK 156

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (318), Expect = 3e-38
 Identities = 58/155 (37%), Positives = 92/155 (59%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
            L   K++ +G+  VGK+S++ RF  D FD    ATIG+DF  KT+ ++    +L +WDT
Sbjct: 4   VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDT 63

Query: 66  AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125
           AGQERFR+L PSY R +   ++VYDV  R +F+    W++E+ T    + I+ ++     
Sbjct: 64  AGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKI 123

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             E R+V   EG   +R+ +++FIE SAK    ++
Sbjct: 124 DKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQ 158

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (317), Expect = 4e-38
 Identities = 59/151 (39%), Positives = 105/151 (69%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 4   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
            FRS+  SY R ++ A++VYD+  R++F + + W+++ R    S+++I+L+GNK+DL  +
Sbjct: 64  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 123

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  EEGEA +RE  ++F+ETSAK   N++
Sbjct: 124 RDVKREEGEAFAREHGLIFMETSAKTACNVE 154

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (307), Expect = 1e-36
 Identities = 57/151 (37%), Positives = 98/151 (64%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G+   GK+ ++ +F+  KF +    TIG++F SK + +  + V+LQ+WDTAGQE
Sbjct: 6   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R ++ A++VYD+ SR+++   + W+ + R     +++I+L GNK DL   
Sbjct: 66  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 125

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R+V+  E    ++E  +MF+ETSA  G N++
Sbjct: 126 REVTFLEASRFAQENELMFLETSALTGENVE 156

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (305), Expect = 2e-36
 Identities = 53/153 (34%), Positives = 86/153 (56%), Gaps = 2/153 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YK+V LG   VGK+++  +F+   F   Y  TI  DF  K + ++     L++ DTAG 
Sbjct: 3   EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGT 61

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLV 127
           E+F S+   YI++    ++VY + ++QSF +     D++   +    V ++LVGNK DL 
Sbjct: 62  EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            +R+VS  EG A + E    F+ETSAK+   + 
Sbjct: 122 SEREVSSSEGRALAEEWGCPFMETSAKSKTMVD 154

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (305), Expect = 3e-36
 Identities = 60/162 (37%), Positives = 96/162 (59%), Gaps = 11/162 (6%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVR 59
            KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +    +           V 
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 60  LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIV 118
           LQLWDTAGQERFRSL  ++ RD+   ++++D+ S+QSFLN   W+ +++     +   IV
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 119 LVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           L+GNK DL ++R+V+  +    + +  + + ETSA  G N++
Sbjct: 126 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVE 167

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (297), Expect = 4e-35
 Identities = 62/154 (40%), Positives = 104/154 (67%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 4   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63

Query: 67  GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R +  A+VVYD+ + +SF     W+ E++ +   +++I L GNK DL
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             KR V  +E ++ + + +++F+ETSAK   N+ 
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVN 157

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 9e-33
 Identities = 61/151 (40%), Positives = 96/151 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R+  +KF++ +  T+G  FL+K + +  + V L +WDTAGQE
Sbjct: 4   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RF +L P Y RDS+ A++VYD+    SF     W+ E+R   G+++ + +VGNK DL ++
Sbjct: 64  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 123

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R VSI+E E+ +  +      TSAK    I+
Sbjct: 124 RHVSIQEAESYAESVGAKHYHTSAKQNKGIE 154

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  111 bits (277), Expect = 3e-32
 Identities = 53/156 (33%), Positives = 95/156 (60%), Gaps = 2/156 (1%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           +LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + DT
Sbjct: 1   SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDT 59

Query: 66  AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS-DVIIVLVGNKT 124
           AGQE + ++  +Y R     + V+ +   +SF  T+ + +++   +   +V  +LVGNK+
Sbjct: 60  AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 119

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVS+EE + ++ + NV ++ETSAK   N+ 
Sbjct: 120 DLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVD 155

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 6e-32
 Identities = 62/156 (39%), Positives = 92/156 (58%), Gaps = 6/156 (3%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ LGD  VGK+S++ R++ +KFD     TIG++FL+K + ++   V +Q+WDTAGQE
Sbjct: 7   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVR----TERGSDVIIVLVGNKTD 125
           RFRSL   + R S   ++ + V   QSF N S W  E       +       V++GNK D
Sbjct: 67  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 126

Query: 126 LVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIK 160
           + E RQVS EE +A  R+  +  + ETSAK   N+ 
Sbjct: 127 ISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVA 161

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (274), Expect = 1e-31
 Identities = 59/155 (38%), Positives = 93/155 (60%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           AL + K+  LGD  VGK+SI+ RF+ D FD     TIG  F++KT+  ++   +  +WDT
Sbjct: 1   ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 60

Query: 66  AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125
           AG ERFR+L P Y R S+ A++VYD+   ++F     W+ E+R      +++ + GNK D
Sbjct: 61  AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 120

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           L + R+V   + +  +  ++ +F+ETSAK   NI 
Sbjct: 121 LTDVREVMERDAKDYADSIHAIFVETSAKNAININ 155

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  109 bits (272), Expect = 1e-31
 Identities = 54/154 (35%), Positives = 87/154 (56%), Gaps = 2/154 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT +  RF   +F +  +ATIG+DF  + + ++   +++QLWDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 62

Query: 70  RFRSL-IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS-DVIIVLVGNKTDLV 127
           RFR   +  Y R+    V VYD+ +  SF +   WI+E +    + D+  +LVGNK DL 
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 122

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG 161
              QV  +  +  +   ++   ETSAK   +   
Sbjct: 123 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDH 156

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 2e-31
 Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 14/164 (8%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
            +  L P     + V +V + V S  SF N  +      T        +LVG + DL + 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

Query: 130 RQV------------SIEEGEAKSRELNVM-FIETSAKAGFNIK 160
                          + E  E  +R+L  + ++E SA     +K
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK 166

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 8e-31
 Identities = 45/155 (29%), Positives = 85/155 (54%), Gaps = 3/155 (1%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59

Query: 67  GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ ++++  +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            +  R V   + +  +R   + +IETSAK    ++
Sbjct: 120 -LAARTVESRQAQDLARSYGIPYIETSAKTRQGVE 153

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (266), Expect = 2e-30
 Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 14/164 (8%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
            +  L P     + V+++ + + S  SF N              +  I+LVG K DL + 
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124

Query: 130 RQVSIE------------EGEAKSRELN-VMFIETSAKAGFNIK 160
           +    +            +G A ++E+  V ++E SA     +K
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 168

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (264), Expect = 5e-30
 Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 14/173 (8%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA        K V +GD +VGKT ++  +  D F   Y  T+  D  + ++ +  +   L
Sbjct: 1   MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLL 59

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
            L+DTAGQE +  L P     + V ++ + V +  SF N  +       E   +V  +L+
Sbjct: 60  GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLI 119

Query: 121 GNKTDLVEKRQ------------VSIEEGEAKSRELNVM-FIETSAKAGFNIK 160
           G + DL +  +            + +E+G+  ++E+    ++E SA     +K
Sbjct: 120 GTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLK 172

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (261), Expect = 8e-30
 Identities = 57/163 (34%), Positives = 92/163 (56%), Gaps = 2/163 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           KY+LV +G   VGK+++  +F+   F   Y  TI  D  +K   ++DR  RL + DTAGQ
Sbjct: 5   KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQ 63

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDE-VRTERGSDVIIVLVGNKTDLV 127
           E F ++   Y+R     ++V+ V  R SF    K+  + +R +   +  ++L+GNK DL 
Sbjct: 64  EEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLD 123

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
            +RQV+ EEG+  +R+L V ++E SAK   N+      + R+I
Sbjct: 124 HQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  103 bits (257), Expect = 3e-29
 Identities = 69/153 (45%), Positives = 100/153 (65%), Gaps = 3/153 (1%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV LG+ +VGK+SI+ RF+ + F    + TIG  FL++ + + + TV+ ++WDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL---V 127
           F SL P Y R++  A+VVYDV   QSF+    W+ E+  +   D+II LVGNK D+    
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG 124

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            +R+V+ EEGE  + E  ++F ETSAK G N+ 
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVN 157

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 1e-28
 Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 2/153 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
            +KLV +G   VGK+++  +F+   F + Y      D  +K   ++    RL + DTAGQ
Sbjct: 6   THKLVVVGGGGVGKSALTIQFIQSYFVSDYD-PTIEDSYTKICSVDGIPARLDILDTAGQ 64

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLV 127
           E F ++   Y+R     ++V+ +  RQSF    K   ++   +  D   +VLVGNK DL 
Sbjct: 65  EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 124

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            +RQV   E  A     +V + E SAK   N+ 
Sbjct: 125 SQRQVPRSEASAFGASHHVAYFEASAKLRLNVD 157

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 1e-28
 Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 14/165 (8%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++     D+F   Y  T+  +     + ++ + V L LWDTAG 
Sbjct: 2   RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGL 60

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           E +  L P    D+ V ++ + + S  S  N  +           +V I+LVGNK DL  
Sbjct: 61  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 120

Query: 129 KRQV------------SIEEGEAKSRELNVM-FIETSAKAGFNIK 160
                             EEG   +  +    ++E SAK    ++
Sbjct: 121 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR 165

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  101 bits (251), Expect = 4e-28
 Identities = 58/155 (37%), Positives = 92/155 (59%), Gaps = 4/155 (2%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K + ++DR V +Q+WDTAGQE
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS----DVIIVLVGNKTD 125
           RF+SL  ++ R +   V+V+DV +  +F     W DE   +       +   V++GNK D
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           L  ++  +         + N+ + ETSAK   N++
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 157

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (248), Expect = 7e-28
 Identities = 49/154 (31%), Positives = 88/154 (57%), Gaps = 3/154 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTAG 
Sbjct: 3   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGT 61

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWID-EVRTERGSDVIIVLVGNKTDLV 127
           E+F ++   Y+++     +VY + ++ +F +     +  +R +   DV ++LVGNK DL 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121

Query: 128 EKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNIK 160
           ++R V  E+G+  +R+  N  F+E+SAK+  N+ 
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVN 155

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  100 bits (248), Expect = 9e-28
 Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 14/164 (8%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  +  + +  ++ + + L LWDT+G 
Sbjct: 2   KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGS 60

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
             + ++ P    DS   ++ +D++  ++  +  K       E   +  ++LVG K+DL  
Sbjct: 61  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 120

Query: 129 ------------KRQVSIEEGEAKSRELNVM-FIETSAKAGFNI 159
                       +  VS ++G   ++++    +IE SA    N 
Sbjct: 121 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENS 164

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.3 bits (238), Expect = 2e-26
 Identities = 58/150 (38%), Positives = 87/150 (58%), Gaps = 1/150 (0%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +G+ +VGK+S+I R+    F   Y+ TIG+DFL + + + D  VRL LWDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           F ++  +Y R +   V+V+    R+SF   S W ++V  E G D+   LV NK DL++  
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDS 122

Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            +  EE E  ++ L + F  TS K   N+ 
Sbjct: 123 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVS 152

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.3 bits (238), Expect = 2e-26
 Identities = 51/163 (31%), Positives = 87/163 (53%), Gaps = 3/163 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YKLV +GD  VGK+++  +F    F   Y  TI  D   K   ++++   L + DTAGQE
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTI-EDSYLKHTEIDNQWAILDVLDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVE 128
            F ++   Y+R     ++VY V  + SF +  ++   + R +      ++LV NK DL+ 
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAG-FNIKGCSPTIRRLI 170
            R+V+ ++G+  + + N+ +IETSAK    N+      + R+I
Sbjct: 124 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 166

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 93.9 bits (232), Expect = 2e-25
 Identities = 34/156 (21%), Positives = 69/156 (44%), Gaps = 9/156 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG  + GKT+I+ +    +   T      + F  +T+    + V+  +WD  GQ
Sbjct: 12  EMRILMLGLDAAGKTTILYKLKLGQSVTTIP---TVGFNVETVT--YKNVKFNVWDVGGQ 66

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDL- 126
           ++ R L   Y   +   + V D A R       + +  +  +R   D II++  NK DL 
Sbjct: 67  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 126

Query: 127 --VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             ++  ++  + G  + R+ N     + A +G  + 
Sbjct: 127 DAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 162

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 94.0 bits (232), Expect = 2e-25
 Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 7/158 (4%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL-QLWDTAGQ 68
            K++ LGD  VGKTS++ R++ DK+   Y+ATIG DFL+K + ++   V   Q+WDTAGQ
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKW----IDEVRTERGSDVIIVLVGNKT 124
           ERF+SL  ++ R +   V+VYDV +  SF N   W    +             V++GNK 
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 125 DLVEKRQVSIEEGEAKSREL--NVMFIETSAKAGFNIK 160
           D  E +++  E+   +  +   ++    TSAK   N+ 
Sbjct: 123 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVD 160

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 93.6 bits (231), Expect = 2e-25
 Identities = 26/154 (16%), Positives = 60/154 (38%), Gaps = 9/154 (5%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ +G  + GKT+I+ +    +       T           +E + +   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIV-----TTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV----GNKTDL 126
            R L   Y +++   + V D   R+      + +  +  E      ++LV     +  + 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           +   +++ + G    R  N     T A +G  + 
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 150

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.0 bits (232), Expect = 2e-25
 Identities = 44/152 (28%), Positives = 83/152 (54%), Gaps = 3/152 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 3   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           E+F  L   Y   +  A++++DV SR ++ N   W  ++      ++ IVL GNK D+ +
Sbjct: 63  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKD 121

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           ++  +        R+ N+ + + SAK+ +N +
Sbjct: 122 RKVKAKSIVFH--RKKNLQYYDISAKSNYNFE 151

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.4 bits (228), Expect = 8e-25
 Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 3/163 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++   G   VGK+S++ RF+   F  +Y  T+   +  + +  +     LQ+ DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSH 61

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLV 127
           +F ++    I      ++VY + SRQS        +++   +G    + I+LVGNK D  
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
             R+V   E EA +R     F+ETSAK   N+K     +  L 
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 164

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 92.7 bits (229), Expect = 8e-25
 Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 9/156 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG    GKT+I+ R    +   T   TIG +       L  + ++L +WD  GQ
Sbjct: 17  ELRILILGLDGAGKTTILYRLQIGEVVTTKP-TIGFNV----ETLSYKNLKLNVWDLGGQ 71

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDL- 126
              R     Y  D++  + V D   +      SK +  +  E    D  +++  NK D  
Sbjct: 72  TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQP 131

Query: 127 --VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             +   +VS E    + ++ +   + +SA  G  I 
Sbjct: 132 GALSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 167

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.1 bits (222), Expect = 5e-24
 Identities = 53/155 (34%), Positives = 78/155 (50%), Gaps = 4/155 (2%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           A+ KL   G   VGK++++ RF+  +F   Y  T+   +      ++D  V +++ DTAG
Sbjct: 1   AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAG 59

Query: 68  QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDL 126
           QE        ++R     V+VYD+  R SF       + +   +   +V ++LVGNK DL
Sbjct: 60  QEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL 118

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAG-FNIK 160
              RQVS EEGE  + EL   F E SA  G  NI 
Sbjct: 119 DHSRQVSTEEGEKLATELACAFYECSACTGEGNIT 153

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 85.1 bits (209), Expect = 7e-22
 Identities = 28/156 (17%), Positives = 61/156 (39%), Gaps = 9/156 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++K++ +G  + GKT+I+ +F  ++  +T               +     R  +WD  GQ
Sbjct: 15  EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE-----EIVINNTRFLMWDIGGQ 69

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS-DVIIVLVGNKTDL- 126
           E  RS   +Y  ++   +VV D   R+    T + + ++          +++  NK D+ 
Sbjct: 70  ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 129

Query: 127 --VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             +   ++S        ++         A  G  + 
Sbjct: 130 ECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 165

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.0 bits (206), Expect = 1e-21
 Identities = 50/153 (32%), Positives = 81/153 (52%), Gaps = 2/153 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
             K+  LG +SVGK+S+  +F+  +F ++Y  TI  +  +K + +  +   LQL DTAGQ
Sbjct: 4   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI-ENTFTKLITVNGQEYHLQLVDTAGQ 62

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLV 127
           + +     +Y  D +  ++VY V S +SF        ++        + I+LVGNK DL 
Sbjct: 63  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            +R +S EEG+A +   N  F+E+SAK      
Sbjct: 123 MERVISYEEGKALAESWNAAFLESSAKENQTAV 155

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 82.4 bits (202), Expect = 5e-21
 Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 9/156 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L+ LG  + GKT+I+ +F  +  D     TI          LE R  +L +WD  GQ
Sbjct: 2   ELRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQ 56

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDE-VRTERGSDVIIVLVGNKTDLV 127
           +  RS   +Y   +   + V D A RQ   +  + +   +  ER +   +++  NK DL 
Sbjct: 57  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 116

Query: 128 EKRQVSI---EEGEAKSRELNVMFIETSAKAGFNIK 160
                +           R  +      SA  G ++ 
Sbjct: 117 GALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 152

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 82.3 bits (202), Expect = 6e-21
 Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 9/156 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG  + GKT+++ +   +   +    T G +  S       +  +L +WD  GQ
Sbjct: 16  EVRILLLGLDNAGKTTLLKQLASEDISHITP-TQGFNIKSVQS----QGFKLNVWDIGGQ 70

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLV 127
            + R    SY  ++ + + V D A R+ F  T + + E+  E + S V +++  NK DL+
Sbjct: 71  RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130

Query: 128 EKRQVSI---EEGEAKSRELNVMFIETSAKAGFNIK 160
                S           R+        SA  G  ++
Sbjct: 131 TAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.1 bits (201), Expect = 7e-21
 Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 3/152 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YK++ LG   VGK+++   F   +               +++ ++     L ++D   Q+
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRSIVVDGEEASLMVYDIWEQD 59

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKW-IDEVRTERGSDVIIVLVGNKTDLVE 128
             R L    +      V+VY V  + SF   S+  +   R  +  DV I+LVGNK+DLV 
Sbjct: 60  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 119

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            R+VS++EG A +   +  FIETSA    N++
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQ 151

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 80.9 bits (198), Expect = 2e-20
 Identities = 34/156 (21%), Positives = 71/156 (45%), Gaps = 8/156 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L  +G Q  GKT+ +      +F+     T+G +       +    V ++LWD  GQ
Sbjct: 2   EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM----RKITKGNVTIKLWDIGGQ 57

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDL- 126
            RFRS+   Y R  S  V + D A ++    +   +  +  + +   + ++++GNK DL 
Sbjct: 58  PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 117

Query: 127 --VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             ++++++  +   +  ++  +     S K   NI 
Sbjct: 118 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNID 153

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.0 bits (193), Expect = 1e-19
 Identities = 31/161 (19%), Positives = 55/161 (34%), Gaps = 16/161 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KL+FLG  + GKT+++     D+      AT+   +   +  L    ++   +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS-DVIIVLVGNKTDLVEK 129
            R L   Y  + +  V + D A  + F      +D +       DV  V++GNK D    
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 130 RQVS----------IEEGEAKSRELNVMFIETSAKAGFNIK 160
              +              +    +  V     S        
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYL 157

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.6 bits (192), Expect = 1e-19
 Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 3/155 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
            Y++V +G+Q VGK+++   F       ++    +G D   +T+ ++  +  + L D   
Sbjct: 3   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWE 62

Query: 68  QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSK--WIDEVRTERGSDVIIVLVGNKTD 125
            +     +  +      A ++    + ++    +    I   R  +  D+ I+LVGNK+D
Sbjct: 63  NKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 122

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           LV  R+VS+ EG A +   +  FIETSA    N+K
Sbjct: 123 LVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 157

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (190), Expect = 3e-19
 Identities = 31/158 (19%), Positives = 60/158 (37%), Gaps = 7/158 (4%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++ + +L  LGD   GK+S+I RF+   +          +   K M ++ +T  + + + 
Sbjct: 2   SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLE--KTESEQYKKEMLVDGQTHLVLIREE 59

Query: 66  AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125
           AG    +     +         + D  S Q+       +  +R E    + + LVG +  
Sbjct: 60  AGAPDAK--FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 117

Query: 126 LVEK--RQVSIEEGEAKSREL-NVMFIETSAKAGFNIK 160
           +     R V      A   ++    + ET A  G N+ 
Sbjct: 118 ISASSPRVVGDARARALCADMKRCSYYETCATYGLNVD 155

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 73.2 bits (178), Expect = 2e-17
 Identities = 29/156 (18%), Positives = 55/156 (35%), Gaps = 9/156 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG    GKT+I+ R    +   T               +  + ++ Q+WD  G 
Sbjct: 5   EMRILILGLDGAGKTTILYRLQVGEVVTTIP-----TIGFNVETVTYKNLKFQVWDLGGL 59

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLV 127
              R     Y  ++   + V D   R     +   +  +  E      I+V+  NK D+ 
Sbjct: 60  TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 119

Query: 128 EKRQVS---IEEGEAKSRELNVMFIETSAKAGFNIK 160
           +    S      G    ++      +TSA  G  + 
Sbjct: 120 QAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLD 155

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.4 bits (179), Expect = 3e-17
 Identities = 26/156 (16%), Positives = 51/156 (32%), Gaps = 18/156 (11%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ LG    GK++ + +    +  +    T GI         E + V  ++ D  GQ 
Sbjct: 3   VKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYD----FEIKNVPFKMVDVGGQR 55

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDE-----------VRTERGSDVIIV 118
             R          +  + +   +     L   +  +            V     S+V I+
Sbjct: 56  SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 115

Query: 119 LVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L  NKTDL+E++   +   +               +
Sbjct: 116 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQ 151

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.0 bits (178), Expect = 4e-17
 Identities = 24/189 (12%), Positives = 53/189 (28%), Gaps = 43/189 (22%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KL+ LG    GK++ I +            T GI      +         ++ D  GQ
Sbjct: 2   ELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYPFDLQSVIF----RMVDVGGQ 55

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQS-----------FLNTSKWIDEVRTERGSDVII 117
              R        + +  + +  ++                 + + +   +      +  +
Sbjct: 56  RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSV 115

Query: 118 VLVGNKTDLVEKRQVSIEEGE--------------------------AKSRELNVMFIET 151
           +L  NK DL+E++ +     +                              +  +    T
Sbjct: 116 ILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFT 175

Query: 152 SAKAGFNIK 160
            A    NI+
Sbjct: 176 CATDTENIR 184

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.9 bits (173), Expect = 3e-16
 Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 19/140 (13%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           A ++L+ LG    GK++I+ +            T GI         +   V   ++D  G
Sbjct: 5   ATHRLLLLGAGESGKSTIVKQM----RILHVVLTSGIFETK----FQVDKVNFHMFDVGG 56

Query: 68  QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWI-----------DEVRTERGSDVI 116
           Q   R        D +  + V   +S    +                           + 
Sbjct: 57  QRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTIS 116

Query: 117 IVLVGNKTDLVEKRQVSIEE 136
           ++L  NK DL+ ++ ++ + 
Sbjct: 117 VILFLNKQDLLAEKVLAGKS 136

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 70.5 bits (171), Expect = 3e-16
 Identities = 29/168 (17%), Positives = 55/168 (32%), Gaps = 21/168 (12%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
             KLVFLG  + GKT+++     D+                +  L    +    +D  G 
Sbjct: 13  TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLH-----PTSEELTIAGMTFTTFDLGGH 67

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDE-VRTERGSDVIIVLVGNKTDLV 127
            + R +  +Y+   +  V + D A  +  L + + +D  +  E  ++V I+++GNK D  
Sbjct: 68  IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 127

Query: 128 EKRQVS---------------IEEGEAKSRELNVMFIETSAKAGFNIK 160
           E                          +     +     S        
Sbjct: 128 EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYG 175

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.7 bits (164), Expect = 4e-15
 Identities = 24/157 (15%), Positives = 48/157 (30%), Gaps = 20/157 (12%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KL+ LG    GK++I+ +              GI       +   + +  +++D  GQ
Sbjct: 2   EVKLLLLGAGESGKSTIVKQMKIIHEA-----GTGI----VETHFTFKDLHFKMFDVGGQ 52

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSK-----------WIDEVRTERGSDVII 117
              R          +  +    ++     L   +           +      +  +D  I
Sbjct: 53  RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 112

Query: 118 VLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           +L  NK DL E++                   E +A 
Sbjct: 113 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAA 149

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.1 bits (152), Expect = 2e-13
 Identities = 20/163 (12%), Positives = 53/163 (32%), Gaps = 13/163 (7%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
            ++F+G    GKT +  R +  ++ +T   +I        +          +     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSK----WIDEVRTERGSDVIIVLVGNKTDL 126
              L+  +   +   V V D A+ Q  +         +        +   +++  NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 127 VEKRQVSIEEGE--------AKSRELNVMFIETSAKAGFNIKG 161
              +   + + +          +R      +++S+ A   +  
Sbjct: 121 AMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGK 163

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.4 bits (119), Expect = 9e-09
 Identities = 25/171 (14%), Positives = 60/171 (35%), Gaps = 25/171 (14%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +  ++  G Q+ GKTS++T    D    T  +             +     + L D  G 
Sbjct: 3   QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE------PLSAADYDGSGVTLVDFPGH 56

Query: 69  ERFRSLIPSYIRDSSVA-----VVVYDVASRQSFLNTSKWIDEVRTE----RGSDVIIVL 119
            + R  +  Y++  +        +V      +    T++++ ++ +       + + I++
Sbjct: 57  VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI 116

Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELN---------VMFIETSAKAGFNIKG 161
             NK++L   R  S  + +A   E+          +  +E         + 
Sbjct: 117 ACNKSELFTARPPSKIK-DALESEIQKVIERRKKSLNEVERKINEEDYAEN 166

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 40.1 bits (92), Expect = 4e-05
 Identities = 31/180 (17%), Positives = 60/180 (33%), Gaps = 24/180 (13%)

Query: 13  VFLGDQSVGKTSIITRF------------------MYDKFDNTYQATIGIDFLSKTMYLE 54
           +F G  +VGK+++I R                     +  ++      G  F+       
Sbjct: 4   IFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEV 63

Query: 55  DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD 114
              ++ ++            +   + D   A  +     ++  +       +   E    
Sbjct: 64  QERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 123

Query: 115 VIIVLVGNKTDLVEKRQVSI----EEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
            I+    NK D ++  Q  I    E+ E    E++ +FI  SAK G NI+     I  +I
Sbjct: 124 TIV--AVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI 181

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 39.3 bits (90), Expect = 6e-05
 Identities = 20/150 (13%), Positives = 42/150 (28%), Gaps = 1/150 (0%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V  G  + GK+S++      +         G        ++    + L + DTAG   
Sbjct: 3   KVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
               +     + +   +            T+    +        +  +       +V  +
Sbjct: 62  ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121

Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
                E    S       I  SA+ G  + 
Sbjct: 122 ADITGETLGMSEVNGHALIRLSARTGEGVD 151

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 36.3 bits (82), Expect = 8e-04
 Identities = 19/162 (11%), Positives = 44/162 (27%), Gaps = 10/162 (6%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
             ++ F G  + GK+S +      K       T G   L     + D    + L      
Sbjct: 16  GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYA 75

Query: 69  ERFRSLIPSY------IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGN 122
           E    +   +        +   ++    V               +     S++ ++++  
Sbjct: 76  EVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLT 135

Query: 123 KTDLVEKRQVSIEEGEAKSREL----NVMFIETSAKAGFNIK 160
           K D +       +    +   L    +V     S+     + 
Sbjct: 136 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVD 177

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 35.5 bits (80), Expect = 0.001
 Identities = 25/154 (16%), Positives = 51/154 (33%), Gaps = 9/154 (5%)

Query: 13  VFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72
             +G  +VGK++++   +  K                   L +   ++   DT G  +  
Sbjct: 9   AIVGKPNVGKSTLLNNLLGVKVAPI-SPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 67

Query: 73  SLIPSYIR------DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
             +  ++        + V  VV+ V  R       + +          V I+LVGNK D 
Sbjct: 68  DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDA 127

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            +  + +++       E     +  SA     + 
Sbjct: 128 AKYPEEAMKAYHELLPEAEPRML--SALDERQVA 159

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 21/165 (12%), Positives = 46/165 (27%), Gaps = 11/165 (6%)

Query: 14  FLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----E 69
            +G  + GK+S++                 +   +  +       R  L D  G      
Sbjct: 6   LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSP-NLGVVEVSEEERFTLADIPGIIEGAS 64

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWI----DEVRTERGSDVIIVLVGNKTD 125
             + L   ++R  +   V+  V         +                    ++  NK D
Sbjct: 65  EGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVD 124

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRLI 170
           L+E+    ++          +  +  SA  G  +      +  L+
Sbjct: 125 LLEEEA--VKALADALAREGLAVLPVSALTGAGLPALKEALHALV 167

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 16/125 (12%), Positives = 33/125 (26%), Gaps = 7/125 (5%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSK--TMYLEDRTVRLQLWDTAGQ 68
            +   G+   GK+S I        +    A  G+  ++     Y       +  WD  G 
Sbjct: 58  NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGI 117

Query: 69  ERFRSLIPSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
                   +Y+             +++ +   N       +      +   V    K D 
Sbjct: 118 GSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAIS-MMKKEFYFVR--TKVDS 174

Query: 127 VEKRQ 131
               +
Sbjct: 175 DITNE 179

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	170
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	100.0
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	100.0
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.98
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.96
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.96
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.96
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.95
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.95
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.95
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.94
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.94
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.94
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.94
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.93
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.93
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.92
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.92
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.92
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.91
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.91
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.91
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.9
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.9
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.9
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.89
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.88
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.86
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.85
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.84
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.83
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.82
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.82
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.78
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.77
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.76
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.75
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.71
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.69
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.65
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.56
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.53
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.51
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.49
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.43
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.3
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.25
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.18
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.88
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.81
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.67
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.67
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.6
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.6
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.59
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.56
d1okkd2	207	GTPase domain of the signal recognition particle r	98.5
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.46
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.44
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.38
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.33
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.19
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.1
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.09
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.05
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.05
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.04
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	98.0
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.98
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.97
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.96
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.92
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.91
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.87
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.86
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.85
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.83
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.82
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.81
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.79
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.76
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.76
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.75
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.74
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.72
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.7
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.69
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.69
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.67
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.67
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.64
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.63
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.62
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.62
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.61
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.61
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.6
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.6
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.6
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.58
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.58
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.57
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.57
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.55
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.55
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.54
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.53
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.52
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.51
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.49
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.49
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.49
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.48
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.47
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.46
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.46
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.45
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.44
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.44
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.44
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.43
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.42
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.41
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.38
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.38
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.38
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.37
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.37
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.36
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.34
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.27
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.27
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.26
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.24
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.21
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.2
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.14
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.08
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.07
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.06
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.05
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.04
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.03
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	97.03
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.01
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.0
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.95
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.95
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.94
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.92
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.92
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.9
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.8
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.72
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.72
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.72
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.67
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.64
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.62
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.57
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.55
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.54
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.54
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.53
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.52
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.49
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.47
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.44
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.44
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.44
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.41
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.35
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.32
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.27
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.22
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.21
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.21
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.11
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	96.09
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.06
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.05
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	96.05
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.04
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.03
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.02
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.92
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.82
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.82
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.81
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.8
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.7
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.68
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.59
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.53
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.46
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	95.43
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	95.22
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.22
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	95.14
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.12
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.04
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.79
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	94.67
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	94.63
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	94.44
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	93.87
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	93.77
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	93.7
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	93.43
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	93.3
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	93.25
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	93.03
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	92.64
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	92.54
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	92.45
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	92.38
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	92.31
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	92.17
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	91.68
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	91.57
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	91.5
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	91.44
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.65
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	90.64
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	90.33
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	90.29
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	90.21
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.11
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	89.8
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.8
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	89.72
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	89.34
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	88.3
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	87.86
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	87.79
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	87.55
d1eg7a_	549	Formyltetrahydrofolate synthetase {Moorella thermo	86.46
d1vmea1	148	ROO-like flavoprotein TM0755, C-terminal domain {T	86.45
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	86.06
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	84.89
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	84.06
d1knxa1	132	HPr kinase/phoshatase HprK N-terminal domain {Myco	84.03
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	83.85
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	83.54
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	82.99
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	82.97
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	81.78
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	80.93

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.3e-41  Score=218.70  Aligned_cols=164  Identities=37%  Similarity=0.682  Sum_probs=156.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ++++||+++|.+|||||||++++..+.+...+.++.+..........++....+.+||++|++.+..++..++.++|++|
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            57899999999999999999999999999999999998888888888889999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      +|||++++++|+.+..|+..+.....++.|+++|+||+|+.+.+.+..++++++++..+++|++|||++|.||+++|.+|
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l  161 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI  161 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence            99999999999999999999888888899999999999998888999999999999999999999999999999999999


Q ss_pred             HhhC
Q 030856          167 RRLI  170 (170)
Q Consensus       167 ~~~i  170 (170)
                      ++.|
T Consensus       162 ~~~i  165 (167)
T d1z0ja1         162 SRRI  165 (167)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            9875

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7e-42  Score=220.54  Aligned_cols=160  Identities=36%  Similarity=0.624  Sum_probs=151.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      .+||+++|++|||||||++++.++.+...+.++.+.+........++..+.+.+||++|++++..+...+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            48999999999999999999999998888899999888888888999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ||++++++++.+..|+..+.... ++.|+++|+||+|+.+++++..++++++++.+++++++|||++|.|++++|++|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~  160 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  160 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccC-CCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHH
Confidence            99999999999999999988765 57999999999999888899999999999999999999999999999999999987


Q ss_pred             h
Q 030856          169 L  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       161 ~  161 (164)
T d1z2aa1         161 K  161 (164)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4e-41  Score=217.95  Aligned_cols=162  Identities=36%  Similarity=0.675  Sum_probs=152.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      -+||+++|++|||||||++++.++.+...+.++.+.+.........+..+.+.+|||||++++..++..+++++|++|+|
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv   84 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM   84 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999998888889998888888888889999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ||+++++++..+..|+..+......+.|+++++||+|+.+.+.+..++++.+++.+++++++|||++|.|++++|++|++
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~  164 (169)
T d3raba_          85 YDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD  164 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             EECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHHHH
Confidence            99999999999999998888877788999999999999888889999999999999999999999999999999999987


Q ss_pred             hC
Q 030856          169 LI  170 (170)
Q Consensus       169 ~i  170 (170)
                      .|
T Consensus       165 ~i  166 (169)
T d3raba_         165 VI  166 (169)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-41  Score=216.34  Aligned_cols=161  Identities=79%  Similarity=1.190  Sum_probs=153.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +||+++|.+|||||||++++.++.++..+.++.+.+........++..+.+.+||++|++.+...+..++..+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            58999999999999999999999999898999988888888888889999999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      |++++.+++.+..|+..+.....++.|+++|+||+|+.+.+.+..++++++++.++++|++|||++|.|++++|++|+++
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            99999999999999999988877899999999999998888889999999999999999999999999999999999987


Q ss_pred             C
Q 030856          170 I  170 (170)
Q Consensus       170 i  170 (170)
                      |
T Consensus       161 l  161 (164)
T d1yzqa1         161 L  161 (164)
T ss_dssp             S
T ss_pred             h
Confidence            5

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-41  Score=218.24  Aligned_cols=161  Identities=39%  Similarity=0.654  Sum_probs=152.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      .+||+++|++|||||||++++..+.++..+.++.+.++....+..++..+++.+|||||++.+..++..++++++++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v   84 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT   84 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEe
Confidence            58999999999999999999999999888889998899999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ||++++.+++.+..|+..+........|+++|+||+|+.+.+++..++++.+++.+++++++|||++|.||+++|.+|++
T Consensus        85 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~~  164 (171)
T d2ew1a1          85 YDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC  164 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             eecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHHH
Confidence            99999999999999999988877778999999999999888889999999999999999999999999999999999886


Q ss_pred             h
Q 030856          169 L  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       165 ~  165 (171)
T d2ew1a1         165 R  165 (171)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-41  Score=220.18  Aligned_cols=162  Identities=38%  Similarity=0.671  Sum_probs=146.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      .+||+++|.+|||||||++++..+.+...+.++.+.+........++..+.+.+||++|++++..++..+++++|++++|
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   82 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILV   82 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEE
Confidence            58999999999999999999999999999999999899999998999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ||++++++|+.+..|+..+........|+++|+||+|+..+++++.++++.+++.+++++++|||++|.|++++|.+|++
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~~  162 (167)
T d1z08a1          83 YDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCK  162 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred             EeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHHH
Confidence            99999999999999999887776678999999999999988999999999999999999999999999999999999997


Q ss_pred             hC
Q 030856          169 LI  170 (170)
Q Consensus       169 ~i  170 (170)
                      +|
T Consensus       163 ~i  164 (167)
T d1z08a1         163 RM  164 (167)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-41  Score=218.49  Aligned_cols=165  Identities=32%  Similarity=0.476  Sum_probs=150.4

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   84 (170)
                      ++.+.+||+++|.+|||||||++++..+.+...+.++.. +.....+.+++..+.+.+||++|.+++...+..+++++|+
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~   80 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   80 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCeeeeeeccccccccccccccchhhcccee
Confidence            456779999999999999999999999998888777754 5566778889999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 030856           85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCS  163 (170)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (170)
                      +++|||++++++++.+..|+..+.+.. ..+.|+++|+||+|+...+....++++.+++.++++|++|||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f  160 (173)
T d2fn4a1          81 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  160 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             eeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHH
Confidence            999999999999999999999887654 3689999999999998888888999999999999999999999999999999


Q ss_pred             HHHHhhC
Q 030856          164 PTIRRLI  170 (170)
Q Consensus       164 ~~l~~~i  170 (170)
                      +.|++.|
T Consensus       161 ~~l~~~i  167 (173)
T d2fn4a1         161 EQLVRAV  167 (173)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998753

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-40  Score=214.98  Aligned_cols=162  Identities=35%  Similarity=0.661  Sum_probs=153.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      .+||+++|++|||||||++++.++.+...+.++.+.+........++..+++.+||++|++.+..++..+++.+|++++|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv   83 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   83 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence            48999999999999999999999999888888888888888888999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ||++++++++.+..|+..+.....+..|+++++||+|+...+....++++.+++.+++++++|||++|.|++++|+.|++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~~  163 (166)
T d1z0fa1          84 YDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK  163 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             eccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998888789999999999999888888899999999999999999999999999999999988


Q ss_pred             hC
Q 030856          169 LI  170 (170)
Q Consensus       169 ~i  170 (170)
                      .|
T Consensus       164 ~i  165 (166)
T d1z0fa1         164 KI  165 (166)
T ss_dssp             HH
T ss_pred             Hh
Confidence            64

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.8e-40  Score=213.89  Aligned_cols=163  Identities=31%  Similarity=0.495  Sum_probs=148.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .+.+||+++|++|+|||||++++.++.+...+.++.+.. .......++..+.+.+||++|.+.+..+...+++++|+++
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~l   80 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDS-YLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   80 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEE-EEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeec-cccccccccccccccccccccccccccchhhhhhhccEEE
Confidence            457999999999999999999999999888888887644 4556678889999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCC-ChHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF-NIKGCSP  164 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-~v~~~~~  164 (170)
                      +|||++++++|+.+..|+..+.+... .+.|+++++||+|+...+.+..++++++++.++++|++|||+++. ||+++|.
T Consensus        81 lv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~  160 (169)
T d1x1ra1          81 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH  160 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred             EecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHH
Confidence            99999999999999999999877653 689999999999999989999999999999999999999999886 9999999


Q ss_pred             HHHhhC
Q 030856          165 TIRRLI  170 (170)
Q Consensus       165 ~l~~~i  170 (170)
                      .|++.|
T Consensus       161 ~l~~~i  166 (169)
T d1x1ra1         161 DLVRVI  166 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998763

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-41  Score=216.72  Aligned_cols=162  Identities=33%  Similarity=0.427  Sum_probs=148.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .+.+||+++|++|||||||++++.++.+...+.|+.+.++ ...+.+++..+.+.+||++|.+.+..+...++..+|+++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            4568999999999999999999999988888888888664 456678899999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      +|||++++++|+.+..|+..+....+ +++|+++|+||+|+...+.++.++++++++.++++|++|||++|.|++++|+.
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  160 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            99999999999999999999877654 68999999999999888899999999999999999999999999999999999


Q ss_pred             HHhh
Q 030856          166 IRRL  169 (170)
Q Consensus       166 l~~~  169 (170)
                      |++.
T Consensus       161 li~~  164 (167)
T d1xtqa1         161 IILE  164 (167)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8865

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-40  Score=216.08  Aligned_cols=162  Identities=29%  Similarity=0.451  Sum_probs=146.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      +.+||+++|.+|||||||+++++++.+...+.+|.+.. .......++..+.+.+||++|.+.+......++..+|++++
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~-~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   79 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDT-YRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   79 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEE-EEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeec-cccceeeccccceeccccccccccccccccccccceeEEEE
Confidence            46899999999999999999999999888888888744 34456688888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      |||++++++++.+..|+..+.....  .+.|+++|+||+|+...+++..++++++++.+++++++|||++|.|++++|..
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~  159 (171)
T d2erxa1          80 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  159 (171)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            9999999999999999988866543  67899999999999888899999999999999999999999999999999999


Q ss_pred             HHhhC
Q 030856          166 IRRLI  170 (170)
Q Consensus       166 l~~~i  170 (170)
                      |++.+
T Consensus       160 l~~~~  164 (171)
T d2erxa1         160 LLNLE  164 (171)
T ss_dssp             HHHTC
T ss_pred             HHHHH
Confidence            98753

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-40  Score=212.83  Aligned_cols=163  Identities=39%  Similarity=0.756  Sum_probs=154.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      ..+||+++|.+|||||||++++..+.++..+.++.+.+.........+..+.+.+||++|++.+..++..+++++|++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            46899999999999999999999999998889999988888888889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR  167 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (170)
                      +||.+++++++.+..|+..+.+...++.|+++|+||+|+..++.++.++++.+++..+++|++|||++|.||+++|.+|+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~  164 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999999999888888999999999999998899999999999999999999999999999999999999


Q ss_pred             hhC
Q 030856          168 RLI  170 (170)
Q Consensus       168 ~~i  170 (170)
                      +.|
T Consensus       165 ~~i  167 (170)
T d1r2qa_         165 KKL  167 (170)
T ss_dssp             HTS
T ss_pred             HHH
Confidence            865

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-40  Score=218.73  Aligned_cols=168  Identities=26%  Similarity=0.376  Sum_probs=148.5

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhc
Q 030856            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (170)
Q Consensus         1 m~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   80 (170)
                      |...+....+||+++|.+|||||||++++..+.+...+.+|.+ +.........+..+.+.+||++|++.+..++..+++
T Consensus         1 m~~~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~   79 (185)
T d2atxa1           1 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP   79 (185)
T ss_dssp             CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCT
T ss_pred             CCCCCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhccc
Confidence            6677777889999999999999999999999998888888886 455666677888899999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC------------CcccCHHHHHHHHHhcC-Ce
Q 030856           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELN-VM  147 (170)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~  147 (170)
                      ++|++++|||++++++|+.+..|+....+...++.|+++|+||+|+.+            .+.++.++++++++.++ +.
T Consensus        80 ~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~  159 (185)
T d2atxa1          80 MTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACC  159 (185)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSC
T ss_pred             ccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCE
Confidence            999999999999999999886665555555567899999999999864            46788999999999988 69


Q ss_pred             EEEeecCCCCChHHHHHHHHhh
Q 030856          148 FIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       148 ~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      |++|||++|.||+++|+.++++
T Consensus       160 ~~E~SAk~~~gv~e~F~~li~~  181 (185)
T d2atxa1         160 YVECSALTQKGLKTVFDEAIIA  181 (185)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHH
T ss_pred             EEEecCCCCcCHHHHHHHHHHH
Confidence            9999999999999999999875

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-40  Score=214.36  Aligned_cols=158  Identities=30%  Similarity=0.416  Sum_probs=130.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +||+++|++|||||||++++.+..... ..++.. +.....+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~~~~-~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAG-HTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------C-EEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCC-cCCeee-eeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            689999999999999999999876533 233333 444566778899999999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856           90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      |++++++++.+..|+..+..... .++|+++|+||+|+.+.+++..++++++++.++++|++|||++|.|++++|..|++
T Consensus        80 d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~  159 (168)
T d2gjsa1          80 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR  159 (168)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             cccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            99999999999999999877654 67899999999999988899999999999999999999999999999999999987


Q ss_pred             h
Q 030856          169 L  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       160 ~  160 (168)
T d2gjsa1         160 Q  160 (168)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=2.7e-40  Score=213.81  Aligned_cols=162  Identities=33%  Similarity=0.558  Sum_probs=145.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      +-+||+++|++|||||||++++..+.+...+.+|.+.++ ...+.+++..+.+.+||++|.+++..+...+++++|++++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            457999999999999999999999999888888887554 4556788999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      |||++++++++.+..|+..+.+.. .++.|+++|+||+|+.+.+.+..++++.+++..++++++|||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999999987764 4789999999999998888999999999999999999999999999999999999


Q ss_pred             HhhC
Q 030856          167 RRLI  170 (170)
Q Consensus       167 ~~~i  170 (170)
                      ++.|
T Consensus       162 ~~~i  165 (168)
T d1u8za_         162 MREI  165 (168)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8753

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-40  Score=214.49  Aligned_cols=163  Identities=34%  Similarity=0.533  Sum_probs=149.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ++++||+++|++|||||||+++++++.+...+.++.+ +........++..+.+.+||++|.+.+......+++++|+++
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~i   79 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI   79 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhccccee
Confidence            4789999999999999999999999998888888877 556667778889999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      +|||+++++++..+..|+..+..... ++.|+++|+||+|+...+.+..++++.+++.+++++++|||++|.|++++|+.
T Consensus        80 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~  159 (167)
T d1kaoa_          80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred             eeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHH
Confidence            99999999999999999998877543 68999999999999888889999999999999999999999999999999999


Q ss_pred             HHhhC
Q 030856          166 IRRLI  170 (170)
Q Consensus       166 l~~~i  170 (170)
                      |++.|
T Consensus       160 i~~~i  164 (167)
T d1kaoa_         160 IVRQM  164 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-39  Score=211.84  Aligned_cols=161  Identities=36%  Similarity=0.656  Sum_probs=152.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      .+||+++|.+|||||||++++..+.+...+.++.+..........++....+.+||+||++.+..++..++.++|++++|
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   84 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEE
Confidence            48999999999999999999999999888889988888888888888999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ||+++++++..+..|+..+.....++.|+++|+||+|+...++...+.+..+++..++++++|||++|.|++++|++|.+
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~~  164 (174)
T d2bmea1          85 YDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCAR  164 (174)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             EecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHH
Confidence            99999999999999999998888889999999999999888888899999999999999999999999999999999987


Q ss_pred             h
Q 030856          169 L  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       165 ~  165 (174)
T d2bmea1         165 K  165 (174)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-40  Score=211.76  Aligned_cols=162  Identities=35%  Similarity=0.590  Sum_probs=144.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      .++||+++|.+|||||||++++..+.+...+.++.+ +.......+++..+.+.+||++|.+++......++..+|++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL   82 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence            458999999999999999999999998888888876 5566677788999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      |||++++++++.+..|+..+..... ...|+++|+||+|+...+.+..++++++++.++++|++|||++|.|++++|..|
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l  162 (171)
T d2erya1          83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL  162 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHH
Confidence            9999999999999999988766543 679999999999998888999999999999999999999999999999999999


Q ss_pred             HhhC
Q 030856          167 RRLI  170 (170)
Q Consensus       167 ~~~i  170 (170)
                      ++.|
T Consensus       163 ~~~i  166 (171)
T d2erya1         163 VRVI  166 (171)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8753

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-39  Score=211.55  Aligned_cols=161  Identities=37%  Similarity=0.712  Sum_probs=147.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      -+||+++|++|||||||++++.++.+...+.++.+.+.........+....+.+||++|++.+..++..++..+|++++|
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv   82 (173)
T d2a5ja1           3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   82 (173)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEE
Confidence            37999999999999999999999998888888888888888888888899999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ||++++++|+.+..|+..+.....+++|+++|+||+|+...+....++++.+++.++++|++|||++|.|++++|..|++
T Consensus        83 ~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~~  162 (173)
T d2a5ja1          83 YDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK  162 (173)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred             EeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999999998887789999999999999888889999999999999999999999999999999999987


Q ss_pred             h
Q 030856          169 L  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       163 ~  163 (173)
T d2a5ja1         163 E  163 (173)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-39  Score=209.35  Aligned_cols=163  Identities=44%  Similarity=0.765  Sum_probs=152.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      ..+||+++|++|||||||++++.++.+...+.++.+.++....+...+..+.+.+||++|.+.+..++..++..+|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            36899999999999999999999999999899999988888888899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC---CcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE---KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSP  164 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~  164 (170)
                      |||++++++++.+..|+..+........|+++++||+|+.+   .+.+..++++++++..+++|++|||++|.|++++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            99999999999999999888887778899999999999754   477889999999999999999999999999999999


Q ss_pred             HHHhhC
Q 030856          165 TIRRLI  170 (170)
Q Consensus       165 ~l~~~i  170 (170)
                      .|++.|
T Consensus       162 ~i~~~i  167 (170)
T d1ek0a_         162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHh
Confidence            999865

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.6e-40  Score=211.26  Aligned_cols=163  Identities=30%  Similarity=0.522  Sum_probs=147.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ++++||+++|++|||||||++++..+.+...+.++.+..+ ......++..+.+.+||++|...+..++..+++++|+++
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   79 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeE
Confidence            4679999999999999999999999999988888887544 455667888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhc-CCeEEEeecCCCCChHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKGCSP  164 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~v~~~~~  164 (170)
                      +|||++++++|+.+..|+..+.+.. .++.|+++|+||+|+...+....+++..++++. +++|++|||++|.|++++|.
T Consensus        80 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~  159 (167)
T d1c1ya_          80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             EeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHH
Confidence            9999999999999999999887654 468999999999999988889999999999875 68999999999999999999


Q ss_pred             HHHhhC
Q 030856          165 TIRRLI  170 (170)
Q Consensus       165 ~l~~~i  170 (170)
                      +|++.|
T Consensus       160 ~l~~~i  165 (167)
T d1c1ya_         160 DLVRQI  165 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998754

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-39  Score=210.50  Aligned_cols=162  Identities=36%  Similarity=0.679  Sum_probs=149.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      ..+||+++|++|||||||++++.++.+...+.++.+.+.....+..++..+.+.+||++|.+.+...+..+++.+|++|+
T Consensus         3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~   82 (175)
T d2f9la1           3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   82 (175)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEE
Confidence            35899999999999999999999999988888888888888888899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR  167 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (170)
                      |||+++++++..+..|+..+.....+++|+++|+||+|+.+.+....+....+...++.++++|||++|.|++++|++++
T Consensus        83 v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~  162 (175)
T d2f9la1          83 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL  162 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHH
Confidence            99999999999999999999988888899999999999988788888888999999999999999999999999999988


Q ss_pred             hh
Q 030856          168 RL  169 (170)
Q Consensus       168 ~~  169 (170)
                      +.
T Consensus       163 ~~  164 (175)
T d2f9la1         163 TE  164 (175)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-40  Score=213.96  Aligned_cols=158  Identities=28%  Similarity=0.554  Sum_probs=140.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      ++||+++|++|||||||++++..+.+...+.||.+.++.......++..+.+.+||++|+..+..++..+++++|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            68999999999999999999999999999999999999888888888999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ||++++++|+.+..|+..+.+.. +++|+++|+||+|+...+..  +++..++...+++|++|||++|.|++++|.+|++
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~  159 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  159 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHH-CSCCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHH
T ss_pred             cccccccccchhHHHHHHHhhcc-CCCceeeecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999987765 68999999999998765443  4556788999999999999999999999999987


Q ss_pred             h
Q 030856          169 L  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       160 ~  160 (170)
T d1i2ma_         160 K  160 (170)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-39  Score=209.85  Aligned_cols=160  Identities=29%  Similarity=0.418  Sum_probs=142.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      +.||+++|++|||||||++++..+.++..+.|+.+ +........++..+.+.+||++|++.+...+..+++++|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            57999999999999999999999999888888877 55556667888899999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC------------CcccCHHHHHHHHHhcCC-eEEEeecCC
Q 030856           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIETSAKA  155 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S~~~  155 (170)
                      ||++++++|+.+..|+........++.|+++|+||+|+..            .+.+..++++.+++..++ +|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            9999999999987776666666667899999999999864            245788999999999985 999999999


Q ss_pred             CCChHHHHHHHHhh
Q 030856          156 GFNIKGCSPTIRRL  169 (170)
Q Consensus       156 ~~~v~~~~~~l~~~  169 (170)
                      |.|++++|+.+++.
T Consensus       161 ~~gi~e~F~~i~~~  174 (177)
T d1kmqa_         161 KDGVREVFEMATRA  174 (177)
T ss_dssp             CTTHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHH
Confidence            99999999999875

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.2e-40  Score=212.48  Aligned_cols=163  Identities=42%  Similarity=0.718  Sum_probs=124.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      .-+||+++|.+|||||||++++.++.++..+.++.+.+.....+..++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~   84 (173)
T d2fu5c1           5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML   84 (173)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEE
Confidence            34899999999999999999999999888888999989999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR  167 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (170)
                      |||++++.+++.+..|+..+......+.|+++|+||.|....+....+++..++...++++++|||++|+|++++|++|+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~  164 (173)
T d2fu5c1          85 VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA  164 (173)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHH
T ss_pred             EEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999999888778899999999999988888888899999999999999999999999999999998


Q ss_pred             hhC
Q 030856          168 RLI  170 (170)
Q Consensus       168 ~~i  170 (170)
                      +.|
T Consensus       165 ~~i  167 (173)
T d2fu5c1         165 RDI  167 (173)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            753

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-39  Score=208.12  Aligned_cols=160  Identities=33%  Similarity=0.459  Sum_probs=140.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      .+||+++|++|||||||+++++++.+...+.||.+.++... ...++..+.+.+||++|.+.+. ....++.++|++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~-~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQ-ATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEE-EEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccccc-ccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            58999999999999999999999999888999988665443 4567888999999999988764 456788999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCC-ChHHHHHHH
Q 030856           89 YDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF-NIKGCSPTI  166 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-~v~~~~~~l  166 (170)
                      ||++++++++.+..|+....... .++.|+++|+||+|+..++.++.+++++++++++++|++|||++|. ||+++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            99999999999998876655443 3689999999999998888999999999999999999999999998 599999999


Q ss_pred             HhhC
Q 030856          167 RRLI  170 (170)
Q Consensus       167 ~~~i  170 (170)
                      ++.|
T Consensus       160 ~~~i  163 (168)
T d2atva1         160 CREV  163 (168)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8753

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-38  Score=210.70  Aligned_cols=162  Identities=40%  Similarity=0.666  Sum_probs=152.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      .-+||+++|++|||||||++++.++.++..+.++.+.......+.+.+..+.+.+|||||++.+..++..+++++|++|+
T Consensus         5 ~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~   84 (194)
T d2bcgy1           5 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII   84 (194)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            35899999999999999999999999988889999888888888899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIR  167 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~  167 (170)
                      |||+++++++.....|+..+......+.|+++|+||+|+.+.+.+..++...+++..++.+++|||++|.|++++|++|+
T Consensus        85 v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l~  164 (194)
T d2bcgy1          85 VYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA  164 (194)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHHHH
Confidence            99999999999999999988877778999999999999999899999999999999999999999999999999999998


Q ss_pred             hh
Q 030856          168 RL  169 (170)
Q Consensus       168 ~~  169 (170)
                      +.
T Consensus       165 ~~  166 (194)
T d2bcgy1         165 RQ  166 (194)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-38  Score=205.31  Aligned_cols=162  Identities=29%  Similarity=0.518  Sum_probs=145.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ++++||+++|++|||||||+++++++.++..+.++.+..+... ....+..+.+.+||++|.+.+......++..+++++
T Consensus         1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~i   79 (166)
T d1ctqa_           1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (166)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE-EEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccc-eeeeceeeeeeeeeccCccccccchhhhhhcccccc
Confidence            3568999999999999999999999999888888888655544 557788899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      +|||++++.+++.+..|+..+..... +++|+++|+||+|+. .+.+..++++.+++.+++++++|||++|.|++++|++
T Consensus        80 iv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~  158 (166)
T d1ctqa_          80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYT  158 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             eeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccc-cccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHH
Confidence            99999999999999999999877654 679999999999985 5667789999999999999999999999999999999


Q ss_pred             HHhhC
Q 030856          166 IRRLI  170 (170)
Q Consensus       166 l~~~i  170 (170)
                      |++.|
T Consensus       159 i~~~i  163 (166)
T d1ctqa_         159 LVREI  163 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98754

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-38  Score=205.70  Aligned_cols=163  Identities=39%  Similarity=0.697  Sum_probs=142.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ..+||+++|++|||||||++++..+.+. ..+.++.+.+.....+..++..+++.+|||+|++.+..++..+++++|+++
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i   84 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeE
Confidence            4589999999999999999999998875 444566677888888889999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTI  166 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l  166 (170)
                      +|||+++++++..+..|+..+........|+++|+||.|....+.+..+++..+++.+++++++|||++|.|++++|.+|
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l  164 (170)
T d2g6ba1          85 LLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAI  164 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            99999999999999999998888877889999999999999888999999999999999999999999999999999999


Q ss_pred             HhhC
Q 030856          167 RRLI  170 (170)
Q Consensus       167 ~~~i  170 (170)
                      ++.|
T Consensus       165 ~~~i  168 (170)
T d2g6ba1         165 AKEL  168 (170)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            9764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-39  Score=211.56  Aligned_cols=161  Identities=39%  Similarity=0.661  Sum_probs=144.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCC----------eEEEEEEEecCChhhhhhhhhhh
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED----------RTVRLQLWDTAGQERFRSLIPSY   78 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~D~~g~~~~~~~~~~~   78 (170)
                      .+||+++|++|||||||++++.++.+...+.++.+.++....+..++          ..+.+.+||++|++++..++..+
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~   84 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF   84 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHH
Confidence            58999999999999999999999999888888888777766655433          34689999999999999999999


Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCC
Q 030856           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF  157 (170)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~  157 (170)
                      ++++|++|+|||++++++++.+..|+..+.... ....|+++|+||.|+...+++..++++++++.+++++++|||++|+
T Consensus        85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~  164 (186)
T d2f7sa1          85 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQ  164 (186)
T ss_dssp             HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTB
T ss_pred             HhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            999999999999999999999999988776543 3678999999999999889999999999999999999999999999


Q ss_pred             ChHHHHHHHHhh
Q 030856          158 NIKGCSPTIRRL  169 (170)
Q Consensus       158 ~v~~~~~~l~~~  169 (170)
                      |++++|++|++.
T Consensus       165 ~i~e~f~~l~~~  176 (186)
T d2f7sa1         165 NVEKAVETLLDL  176 (186)
T ss_dssp             THHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999999999875

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-38  Score=208.24  Aligned_cols=161  Identities=29%  Similarity=0.387  Sum_probs=142.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      +.+||+++|++|||||||++++..+.++..+.++.+ .........++..+.+.+||++|++++...+..+++++|++++
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   80 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   80 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence            469999999999999999999999999888888887 4455566678888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC------------CcccCHHHHHHHHHhcC-CeEEEeecC
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELN-VMFIETSAK  154 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~S~~  154 (170)
                      |||++++++|+.+..|+........++.|+++|+||+|+.+            .+.+..++++++++.++ ++|++|||+
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  160 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL  160 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTT
T ss_pred             ccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCC
Confidence            99999999999998766666565667899999999999853            35688999999999875 699999999


Q ss_pred             CCCChHHHHHHHHhh
Q 030856          155 AGFNIKGCSPTIRRL  169 (170)
Q Consensus       155 ~~~~v~~~~~~l~~~  169 (170)
                      +|.||+++|+.+++.
T Consensus       161 ~~~~V~e~f~~l~~~  175 (191)
T d2ngra_         161 TQKGLKNVFDEAILA  175 (191)
T ss_dssp             TCTTHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHH
Confidence            999999999988764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1e-37  Score=201.10  Aligned_cols=160  Identities=34%  Similarity=0.595  Sum_probs=144.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh-hhhhhhcCCcEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRDSSVAV   86 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i   86 (170)
                      +-+||+++|++|||||||++++..+.++..+.++.+................+.+||++|...+.. .+..++.++|++|
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            358999999999999999999999999888888888888888888889999999999999877655 4677899999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCC---CCChHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA---GFNIKGC  162 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~---~~~v~~~  162 (170)
                      +|||++++++|+.+..|+..+.+... +++|+++|+||+|+.++++++.++++++++.+++++++|||++   ++||+++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~  160 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI  160 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHH
Confidence            99999999999999999999877654 6899999999999988889999999999999999999999986   5699999


Q ss_pred             HHHHH
Q 030856          163 SPTIR  167 (170)
Q Consensus       163 ~~~l~  167 (170)
                      |.+|+
T Consensus       161 F~~lA  165 (165)
T d1z06a1         161 FMTLA  165 (165)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            99874

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.9e-38  Score=202.79  Aligned_cols=160  Identities=39%  Similarity=0.727  Sum_probs=143.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      -+||+++|.+|+|||||+++++.+.++..+.++.+.++....+..++..+++.+|||||++.+..++..+++++|++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ||++++++++.+..|+..+........|++++++|.|+. .+....++++.++..+++++++|||++|+|++++|++|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~  160 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhh-hhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHH
Confidence            999999999999999998888888889999999999974 4566788999999999999999999999999999999987


Q ss_pred             h
Q 030856          169 L  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       161 ~  161 (166)
T d1g16a_         161 L  161 (166)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-38  Score=206.49  Aligned_cols=162  Identities=28%  Similarity=0.423  Sum_probs=141.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ++.+||+++|++|||||||+++++.+.+...+.++.+ +.....+..++..+++.+||++|++.+..++..++.++|+++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            5679999999999999999999999999888888887 555566778899999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------cccCHHHHHHHHHhcC-CeEEEeec
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELN-VMFIETSA  153 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S~  153 (170)
                      +|||++++++|+.+..|+....+....++|+++|+||+|+...            +.....++..+++..+ ++|++|||
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA  161 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence            9999999999999976555544445578999999999997543            3456778889999887 69999999


Q ss_pred             CCCCChHHHHHHHHhh
Q 030856          154 KAGFNIKGCSPTIRRL  169 (170)
Q Consensus       154 ~~~~~v~~~~~~l~~~  169 (170)
                      ++|.||+++|+.|++.
T Consensus       162 k~~~~V~e~F~~l~~~  177 (183)
T d1mh1a_         162 LTQRGLKTVFDEAIRA  177 (183)
T ss_dssp             TTCTTHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHH
Confidence            9999999999999875

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-38  Score=204.03  Aligned_cols=160  Identities=30%  Similarity=0.458  Sum_probs=137.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCC---hhhhhhhhhhhhcCCcE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG---QERFRSLIPSYIRDSSV   84 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g---~~~~~~~~~~~~~~~d~   84 (170)
                      .+||+++|++|+|||||++++.+.... ....++.+.+.....+.+++..+.+.+||+++   ++++  +...+++++|+
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~   80 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDA   80 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccce
Confidence            589999999999999999999987654 44456677777888888899999999999875   3433  56678899999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 030856           85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCS  163 (170)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (170)
                      +|+|||++++++++.+..|+..+.... .+++|+++|+||+|+.+.+++..+++++++..++++|++|||++|.|++++|
T Consensus        81 ~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f  160 (172)
T d2g3ya1          81 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF  160 (172)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             eeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHH
Confidence            999999999999999999998887653 3689999999999998888999999999999999999999999999999999


Q ss_pred             HHHHhhC
Q 030856          164 PTIRRLI  170 (170)
Q Consensus       164 ~~l~~~i  170 (170)
                      ..|++.|
T Consensus       161 ~~l~~~i  167 (172)
T d2g3ya1         161 EGIVRQV  167 (172)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998753

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-37  Score=201.64  Aligned_cols=162  Identities=40%  Similarity=0.693  Sum_probs=148.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      ...+||+++|.+|+|||||++++.++.+...+.++.+.......+..++..+.+.+||+||++++..++..++.++|+++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            45699999999999999999999999998888888888888888888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      +|||++++++++.+..|+..+..... ...|+++++||.|. .++.+..++++++++.+++++++|||++|+|++++|++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~-~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~  163 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE  163 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS-SSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCccccccchhhhhhhcccccccceeeEEEeecccc-ccccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999876543 57899999999996 45778889999999999999999999999999999999


Q ss_pred             HHhh
Q 030856          166 IRRL  169 (170)
Q Consensus       166 l~~~  169 (170)
                      |++.
T Consensus       164 l~~~  167 (177)
T d1x3sa1         164 LVEK  167 (177)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9875

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-37  Score=202.86  Aligned_cols=160  Identities=24%  Similarity=0.406  Sum_probs=141.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      ++||+++|.+|||||||++++..+.++..+.|+.. +........++..+.+.+||++|++.+...+..+++++|++++|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-ecccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            58999999999999999999999999888888876 45555666788899999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC------------CcccCHHHHHHHHHhcCC-eEEEeecCC
Q 030856           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIETSAKA  155 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S~~~  155 (170)
                      ||+++++||+.+..|+........++.|+++|+||+|+..            .+.++.+++..+++..+. +|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            9999999999998776666555567999999999999853            456889999999999875 999999999


Q ss_pred             CC-ChHHHHHHHHhh
Q 030856          156 GF-NIKGCSPTIRRL  169 (170)
Q Consensus       156 ~~-~v~~~~~~l~~~  169 (170)
                      |. +++++|+.+++.
T Consensus       161 ~~n~i~~~F~~~~~~  175 (179)
T d1m7ba_         161 SENSVRDIFHVATLA  175 (179)
T ss_dssp             BHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHH
Confidence            98 499999998865

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-37  Score=198.56  Aligned_cols=162  Identities=38%  Similarity=0.626  Sum_probs=143.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      +-+||+++|++|||||||++++.++.+...+.++.+...........+..+.+.+||++|.......+..++..++++++
T Consensus         5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   84 (174)
T d1wmsa_           5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL   84 (174)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEE
Confidence            45799999999999999999999999988888998888888888889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhc----CCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC-CeEEEeecCCCCChHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTER----GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFNIKGC  162 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v~~~  162 (170)
                      +||.+++.+++.+..|+..+....    .++.|+++|+||+|+. ++.+..++++.+++..+ ++|++|||++|.|++++
T Consensus        85 ~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~-~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~  163 (174)
T d1wmsa_          85 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAA  163 (174)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHH
T ss_pred             EEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchh-hccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHH
Confidence            999999999999999998876643    2578999999999985 47788999999999875 79999999999999999


Q ss_pred             HHHHHhhC
Q 030856          163 SPTIRRLI  170 (170)
Q Consensus       163 ~~~l~~~i  170 (170)
                      |++|++.|
T Consensus       164 f~~l~~~i  171 (174)
T d1wmsa_         164 FEEAVRRV  171 (174)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998753

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=9e-37  Score=199.88  Aligned_cols=159  Identities=41%  Similarity=0.688  Sum_probs=142.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +||+++|.+|||||||++++.++.+...+.++.+.+.........+..+.+.+||++|...+...+..++..+|+++++|
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   82 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF   82 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence            79999999999999999999999999999999998999999888899999999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCCcccCHHHHHHHHH-hcCCeEEEeecCCCCChHHHHH
Q 030856           90 DVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-ELNVMFIETSAKAGFNIKGCSP  164 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~----~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~v~~~~~  164 (170)
                      |.+++.+++.+..|+..+.....    .++|+++|+||+|+.+ +.+..++...++. ..++++++|||++|.|++++|+
T Consensus        83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~  161 (184)
T d1vg8a_          83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQ  161 (184)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHH
T ss_pred             cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHH
Confidence            99999999999999988876542    4689999999999865 4566667777765 4578999999999999999999


Q ss_pred             HHHhh
Q 030856          165 TIRRL  169 (170)
Q Consensus       165 ~l~~~  169 (170)
                      +|++.
T Consensus       162 ~l~~~  166 (184)
T d1vg8a_         162 TIARN  166 (184)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99864

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.9e-37  Score=199.26  Aligned_cols=161  Identities=39%  Similarity=0.641  Sum_probs=128.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeC-CeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      -+||+++|++|||||||++++.++.+...+.++.+........... .....+.+||++|++.+...+..+++.+|++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            4799999999999999999999999888888877766666665444 345678999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCCc-ccCHHHHHHHHHhcC-CeEEEeecCCCCChHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKR-QVSIEEGEAKSRELN-VMFIETSAKAGFNIKG  161 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~vvv~nK~D~~~~~-~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v~~  161 (170)
                      +||++++.+|+.+..|+..+.....    .++|+++|+||+|+.+.+ .+..++++++++.++ ++|++|||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            9999999999999999998876532    478999999999987654 467889999999986 6999999999999999


Q ss_pred             HHHHHHhh
Q 030856          162 CSPTIRRL  169 (170)
Q Consensus       162 ~~~~l~~~  169 (170)
                      +|++|++.
T Consensus       162 ~f~~l~~~  169 (175)
T d1ky3a_         162 AFEEIARS  169 (175)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999874

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=100.00  E-value=5.3e-36  Score=192.83  Aligned_cols=158  Identities=22%  Similarity=0.302  Sum_probs=129.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v   88 (170)
                      ++||+++|++|+|||||++++..+.+...+.||.+.+....  ..+  .+.+.+||+||++.+...+..++.+++++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~--~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI--TKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEE--EET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeee--eee--eEEEEEeeccccccccccccccccccchhhcc
Confidence            68999999999999999999999998888888877655433  333  36899999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccC---HHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 030856           89 YDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVS---IEEGEAKSRELNVMFIETSAKAGFNIKGCSP  164 (170)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~  164 (170)
                      ||++++++++....|+..+.... .++.|+++|+||.|+.+.....   .......+...+++++++||++|.|++++|+
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~  157 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQ  157 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHH
Confidence            99999999999988888775543 3789999999999986543221   1111122334567999999999999999999


Q ss_pred             HHHhhC
Q 030856          165 TIRRLI  170 (170)
Q Consensus       165 ~l~~~i  170 (170)
                      +|++.+
T Consensus       158 ~l~~~~  163 (164)
T d1zd9a1         158 WLIQHS  163 (164)
T ss_dssp             HHHHTC
T ss_pred             HHHHcc
Confidence            999864

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-34  Score=186.68  Aligned_cols=157  Identities=20%  Similarity=0.343  Sum_probs=130.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ..+.+||+++|++|||||||++++.++.+... .++.+ +.....+.+++..+.+.+||++|+..+     .+++++|++
T Consensus         2 ~~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~-~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~   74 (175)
T d2bmja1           2 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTES-EQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAV   74 (175)
T ss_dssp             CCCEEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSC-EEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEE
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHhCCCCCc-CCccc-eeEEEEeecCceEEEEEEeeccccccc-----cccccccee
Confidence            35679999999999999999999999887543 44444 344566778999999999999997753     478899999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhc---CCCCeEEEEEeCCCCC--CCcccCHHHHHHHHHh-cCCeEEEeecCCCCCh
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLV--EKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNI  159 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~vvv~nK~D~~--~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~v  159 (170)
                      |+|||++++++|+.+..|+..+....   ..+.|+++|+||.|+.  ..+.+..++++.++.. .+++|++|||++|.|+
T Consensus        75 ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v  154 (175)
T d2bmja1          75 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNV  154 (175)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTH
T ss_pred             EEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCH
Confidence            99999999999999999988876543   3678999999988874  4566788889888755 5689999999999999


Q ss_pred             HHHHHHHHhh
Q 030856          160 KGCSPTIRRL  169 (170)
Q Consensus       160 ~~~~~~l~~~  169 (170)
                      +++|..+++.
T Consensus       155 ~~~F~~l~~~  164 (175)
T d2bmja1         155 DRVFQEVAQK  164 (175)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998875

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=100.00  E-value=8.8e-35  Score=189.06  Aligned_cols=159  Identities=22%  Similarity=0.367  Sum_probs=125.6

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   84 (170)
                      ++.+++||+++|++|||||||++++.++.+.. ..++.+.+.  ..+...  .+.+.+||++|.+.+...+..++..+|+
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~--~~i~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~   86 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNI--KSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDI   86 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETTEEE--EEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSE
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCc-ceeeeeeeE--EEeccC--CeeEeEeeccccccchhHHHHHhhccce
Confidence            45678999999999999999999999887642 233333332  223333  4689999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHH-----HHHHhcCCeEEEeecCCCCC
Q 030856           85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGE-----AKSRELNVMFIETSAKAGFN  158 (170)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~S~~~~~~  158 (170)
                      +++|||++++.++..+..|+..+..... .++|+++|+||+|+.++...  ....     ..+...++++++|||++|+|
T Consensus        87 ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~SA~tg~g  164 (176)
T d1fzqa_          87 LIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA--SEIAEGLNLHTIRDRVWQIQSCSALTGEG  164 (176)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred             eEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccH--HHHHHHHHHHHHHhcCCEEEEEeCCCCCC
Confidence            9999999999999999888877765443 67999999999999754332  2222     12334466899999999999


Q ss_pred             hHHHHHHHHhhC
Q 030856          159 IKGCSPTIRRLI  170 (170)
Q Consensus       159 v~~~~~~l~~~i  170 (170)
                      ++++|+||++.|
T Consensus       165 v~e~~~~l~~~i  176 (176)
T d1fzqa_         165 VQDGMNWVCKNV  176 (176)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcC
Confidence            999999999875

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=100.00  E-value=7.4e-34  Score=182.87  Aligned_cols=156  Identities=24%  Similarity=0.345  Sum_probs=122.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      +.+||+++|++|||||||+++|.+... ..+.++.+....  .+..  ..+.+.+||+||++.++..+..++..++++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   75 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIK--TLEH--RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   75 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEEEE--EEEE--TTEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeeeee--eccc--cccceeeeecCcchhhhhHHHhhhhhhhccee
Confidence            468999999999999999999988765 345566654433  2333  34789999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHH-hcCCCCeEEEEEeCCCCCCCcccCHHHHHHHH-----HhcCCeEEEeecCCCCChHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIKG  161 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~v~~  161 (170)
                      +||+++..++.....++..... ....+.|+++|+||+|+.+.....  +.....     ...++++++|||++|+|+++
T Consensus        76 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  153 (165)
T d1ksha_          76 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCN--AIQEALELDSIRSHHWRIQGCSAVTGEDLLP  153 (165)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH--HHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             eeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHH--HHHHHHHhhhhhcCCCEEEEEECCCCCCHHH
Confidence            9999999999888777666544 334789999999999987655442  222221     23356899999999999999


Q ss_pred             HHHHHHhhC
Q 030856          162 CSPTIRRLI  170 (170)
Q Consensus       162 ~~~~l~~~i  170 (170)
                      +|++|.+.|
T Consensus       154 ~~~~l~~~i  162 (165)
T d1ksha_         154 GIDWLLDDI  162 (165)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998753

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=100.00  E-value=4e-34  Score=185.46  Aligned_cols=160  Identities=20%  Similarity=0.329  Sum_probs=123.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~   85 (170)
                      ..+.+||+++|++|||||||++++..+.... ..++.+.....    .....+.+.+||+||...+...+..++..++++
T Consensus         9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i   83 (173)
T d1e0sa_           9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGL   83 (173)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETTEEEEE----EEETTEEEEEEEESCCGGGHHHHGGGTTTCCEE
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceeeeeEEE----eeccceeeEEecCCCcchhhhHHHhhhcccceE
Confidence            3567999999999999999999999776532 23444433222    222346899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCccc---CHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 030856           86 VVVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQV---SIEEGEAKSRELNVMFIETSAKAGFNIKG  161 (170)
Q Consensus        86 i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~vvv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~S~~~~~~v~~  161 (170)
                      ++|||+++++++..+..|+...... ...+.|+++++||+|+.+....   ........+...++.+++|||++|+|++|
T Consensus        84 i~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e  163 (173)
T d1e0sa_          84 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  163 (173)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHH
Confidence            9999999999999998888776543 3468999999999998653322   11111223344567899999999999999


Q ss_pred             HHHHHHhhC
Q 030856          162 CSPTIRRLI  170 (170)
Q Consensus       162 ~~~~l~~~i  170 (170)
                      +|++|.+.+
T Consensus       164 ~~~~l~~~~  172 (173)
T d1e0sa_         164 GLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhc
Confidence            999998764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=100.00  E-value=1.3e-34  Score=189.26  Aligned_cols=159  Identities=22%  Similarity=0.334  Sum_probs=119.9

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcE
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~   84 (170)
                      ...+.+||+++|++|||||||++++.+.... ...++.+.....  ...  ..+.+.+||++|++.+...+..++.++|+
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVET--LSY--KNLKLNVWDLGGQTSIRPYWRCYYADTAA   87 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTTCCEEE--EEE--TTEEEEEEEEC----CCTTGGGTTTTEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCC-ccccccceEEEE--Eee--CCEEEEEEecccccccchhHHhhhcccee
Confidence            3567899999999999999999999877653 223444433222  223  34789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHH-----HHHhcCCeEEEeecCCCCC
Q 030856           85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEA-----KSRELNVMFIETSAKAGFN  158 (170)
Q Consensus        85 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~S~~~~~~  158 (170)
                      +++|||++++.++.....|+....... ..+.|+++|+||+|+.+..  +.++...     .+...++++++|||++|+|
T Consensus        88 ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~g  165 (182)
T d1moza_          88 VIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL--SASEVSKELNLVELKDRSWSIVASSAIKGEG  165 (182)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC--CHHHHHHHTTTTTCCSSCEEEEEEBGGGTBT
T ss_pred             EEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccccc--CHHHHHHHHHHHHHhhCCCEEEEEECCCCCC
Confidence            999999999999999988877665443 3679999999999986432  2233222     2344567899999999999


Q ss_pred             hHHHHHHHHhhC
Q 030856          159 IKGCSPTIRRLI  170 (170)
Q Consensus       159 v~~~~~~l~~~i  170 (170)
                      ++++|++|.+.|
T Consensus       166 v~e~~~~l~~~i  177 (182)
T d1moza_         166 ITEGLDWLIDVI  177 (182)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998753

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.98  E-value=7e-32  Score=172.46  Aligned_cols=156  Identities=19%  Similarity=0.292  Sum_probs=123.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEE
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~   89 (170)
                      +||+++|++|||||||++++.++.+...+.....     .....+...+.+.+||++|...+......++..+++++++|
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF-----NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC-----CEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceee-----EEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            6899999999999999999998876544332221     12223445578999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCccc---CHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 030856           90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQV---SIEEGEAKSRELNVMFIETSAKAGFNIKGCSPT  165 (170)
Q Consensus        90 d~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~  165 (170)
                      |.+++.++..+..|+..+..... ...|+++++||.|+......   .......+++..++++++|||++|+|++++|++
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~  155 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW  155 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHH
Confidence            99999999999888777765443 67899999999998654322   222233345556789999999999999999999


Q ss_pred             HHhhC
Q 030856          166 IRRLI  170 (170)
Q Consensus       166 l~~~i  170 (170)
                      |.++|
T Consensus       156 l~~~l  160 (160)
T d1r8sa_         156 LSNQL  160 (160)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            99875

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.96  E-value=3.2e-29  Score=162.63  Aligned_cols=158  Identities=21%  Similarity=0.286  Sum_probs=115.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .+.+||+++|.+|||||||++++.+..+... .++.+.  .......  ...++.+||+++.+.....+..++..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~-~~~~~~--~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGS--NVEEIVI--NNTRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE-ECCSCS--SCEEEEE--TTEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcc-ccccce--eEEEEee--cceEEEEeccccccccccchhhhhccceeee
Confidence            4679999999999999999999998776422 222221  1122222  2368999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCcccCHHHHHHH----HHhcCCeEEEeecCCCCChHH
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAK----SRELNVMFIETSAKAGFNIKG  161 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~~~S~~~~~~v~~  161 (170)
                      +++|.++..+++....+........ ..+.|+++|+||+|+...... .+..+.+    +...++++++|||++|+|+++
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e  166 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV-AEISQFLKLTSIKDHQWHIQACCALTGEGLCQ  166 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH-HHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcH-HHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHH
Confidence            9999999999888766655544433 368999999999998654332 1222222    234466899999999999999


Q ss_pred             HHHHHHhhC
Q 030856          162 CSPTIRRLI  170 (170)
Q Consensus       162 ~~~~l~~~i  170 (170)
                      ++++|.++|
T Consensus       167 ~~~~L~~~l  175 (177)
T d1zj6a1         167 GLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999764

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=6.2e-28  Score=156.71  Aligned_cols=154  Identities=18%  Similarity=0.112  Sum_probs=106.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh--------hhhhhhhhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF--------RSLIPSYIR   80 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~~~   80 (170)
                      -.|+++|.+|+|||||+|+|++.... ....+..+.+.........+  ..+.+|||||....        ......++.
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~   83 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEALA   83 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhcccccccccc
Confidence            36999999999999999999987643 22233333333333333444  46899999996432        233344578


Q ss_pred             CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcC-CeEEEeecCCCCCh
Q 030856           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFNI  159 (170)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~v  159 (170)
                      ++|++++|+|++++..... ..|...+ +....+.|+++|+||+|+....   .+..+.+....+ ..++++||++|.|+
T Consensus        84 ~ad~il~v~D~~~~~~~~~-~~i~~~l-~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~~~~gi  158 (178)
T d1wf3a1          84 DVNAVVWVVDLRHPPTPED-ELVARAL-KPLVGKVPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRMLSALDERQV  158 (178)
T ss_dssp             SCSEEEEEEETTSCCCHHH-HHHHHHH-GGGTTTSCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEECCTTCHHHH
T ss_pred             cccceeeeechhhhhcccc-cchhhhe-eccccchhhhhhhcccccccCH---HHHHHHHHhhcccCceEEEecCCCCCH
Confidence            9999999999987643222 3333333 3444678999999999986532   233444555555 48899999999999


Q ss_pred             HHHHHHHHhhC
Q 030856          160 KGCSPTIRRLI  170 (170)
Q Consensus       160 ~~~~~~l~~~i  170 (170)
                      ++++++|.+.+
T Consensus       159 ~~L~~~i~~~l  169 (178)
T d1wf3a1         159 AELKADLLALM  169 (178)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHHhC
Confidence            99999998864

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.96  E-value=6.8e-28  Score=154.88  Aligned_cols=158  Identities=20%  Similarity=0.324  Sum_probs=120.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      +.+||+++|.+|||||||++++.++.+... .++.+...  .....  ....+.+||.+|...........+...+++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNV--ETVTY--KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEEE--EEEEE--TTEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcce-ecccceee--eeecc--CceEEEEeeccccccccccchhhhhhhhhhhh
Confidence            469999999999999999999999877543 33333222  22222  33678999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCccc---CHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 030856           88 VYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQV---SIEEGEAKSRELNVMFIETSAKAGFNIKGCS  163 (170)
Q Consensus        88 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~vvv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~  163 (170)
                      ++|..+..++.....++...... .....|+++++||.|+......   ....+..++...++++++|||++|.|++++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~  158 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM  158 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred             hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence            99999888888876665554433 3367899999999998654332   2222233455567899999999999999999


Q ss_pred             HHHHhhC
Q 030856          164 PTIRRLI  170 (170)
Q Consensus       164 ~~l~~~i  170 (170)
                      ++|++.|
T Consensus       159 ~~l~~~l  165 (169)
T d1upta_         159 EWLVETL  165 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998753

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=8.3e-27  Score=149.12  Aligned_cols=152  Identities=22%  Similarity=0.226  Sum_probs=117.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEe
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d   90 (170)
                      ||+++|++|||||||++++.++.+. .+.|+.+....    ..........+||++|...+......++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSE----ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEEE----EECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeEE----EeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            7999999999999999999998764 33455443222    222333568899999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCcccCHHHHHHHH------------HhcCCeEEEeecCCCC
Q 030856           91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKS------------RELNVMFIETSAKAGF  157 (170)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~vvv~nK~D~~~~~~~~~~~~~~~~------------~~~~~~~~~~S~~~~~  157 (170)
                      .+++.++.....|+........ .+.|+++++||.|+....  ...+.....            ...++.+++|||++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV--SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCC--CHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccC--CHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            9999998888777776655443 678999999999986432  222222221            2334589999999999


Q ss_pred             ChHHHHHHHHhh
Q 030856          158 NIKGCSPTIRRL  169 (170)
Q Consensus       158 ~v~~~~~~l~~~  169 (170)
                      |++|+|+||.++
T Consensus       155 Gv~e~~~~l~~~  166 (166)
T d2qtvb1         155 GYLEAFQWLSQY  166 (166)
T ss_dssp             SHHHHHHHHTTC
T ss_pred             CHHHHHHHHhCC
Confidence            999999999874

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=9.5e-28  Score=153.40  Aligned_cols=151  Identities=19%  Similarity=0.212  Sum_probs=109.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh--------hhhhhhhhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF--------RSLIPSYIR   80 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~~~   80 (170)
                      +||+++|.+|||||||+|+|++.... ....+....+.........+  ..+.++|+||..+.        ......++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            69999999999999999999987654 23334443344444444444  46889999994332        122345578


Q ss_pred             CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 030856           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~  160 (170)
                      .+|++++++|..++.+++....|...+.. ...+.|+++|+||+|+..+...       +....+.+++++||++|.|++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~iilv~NK~Dl~~~~~~-------~~~~~~~~~~~iSAk~~~gi~  151 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIAR-LPAKLPITVVRNKADITGETLG-------MSEVNGHALIRLSARTGEGVD  151 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHH-SCTTCCEEEEEECHHHHCCCCE-------EEEETTEEEEECCTTTCTTHH
T ss_pred             hccccceeeccccccchhhhhhhhhhhhh-cccccceeeccchhhhhhhHHH-------HHHhCCCcEEEEECCCCCCHH
Confidence            99999999999988776666665544444 3467999999999998653321       122345699999999999999


Q ss_pred             HHHHHHHhhC
Q 030856          161 GCSPTIRRLI  170 (170)
Q Consensus       161 ~~~~~l~~~i  170 (170)
                      +++++|++.|
T Consensus       152 ~L~~~l~~~l  161 (161)
T d2gj8a1         152 VLRNHLKQSM  161 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhhC
Confidence            9999999875

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=5.6e-28  Score=158.81  Aligned_cols=153  Identities=18%  Similarity=0.184  Sum_probs=112.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      +++||+++|..|||||||++++....+++.+.++       ..  ++....++.+||++|++.+...+..++..++++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~~~~-------~~--~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~   71 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTGIVE-------TH--FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF   71 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCCSEEE-------EE--EEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCccEEE-------EE--EEeeeeeeeeeccccccccccchhhcccCCceeee
Confidence            4789999999999999999999876654433221       22  23344789999999999999999999999999999


Q ss_pred             EEeCCChhhHHh-----------HHHHHHHHHHhcCCCCeEEEEEeCCCCCCC---------------cccCHHHHHHH-
Q 030856           88 VYDVASRQSFLN-----------TSKWIDEVRTERGSDVIIVLVGNKTDLVEK---------------RQVSIEEGEAK-  140 (170)
Q Consensus        88 v~d~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~---------------~~~~~~~~~~~-  140 (170)
                      +||+++.+++..           ...|...+......+.|+++++||.|+...               ......++... 
T Consensus        72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (195)
T d1svsa1          72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI  151 (195)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred             EEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence            999998776632           344545455555578999999999996321               11122222211 


Q ss_pred             ----HH------hcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          141 ----SR------ELNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       141 ----~~------~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                          ..      ..++.+++|||+++.||+++|+.+.+.
T Consensus       152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~  190 (195)
T d1svsa1         152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDV  190 (195)
T ss_dssp             HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHH
Confidence                11      124577899999999999999998764

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=4.4e-28  Score=159.91  Aligned_cols=157  Identities=17%  Similarity=0.148  Sum_probs=121.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      +++||+++|..|||||||++++....+  .+.||.+.+...    .......+.+||++|++.++..+..++..++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   74 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYP----FDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMF   74 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEEE----EECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEEE----EeccceeeeeccccccccccccccccccccceeeE
Confidence            478999999999999999999988776  467888765433    23345789999999999999999999999999999


Q ss_pred             EEeCCChh-----------hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc----------------ccCHHHHHHH
Q 030856           88 VYDVASRQ-----------SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR----------------QVSIEEGEAK  140 (170)
Q Consensus        88 v~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~----------------~~~~~~~~~~  140 (170)
                      +||.++..           .++....|...+......+.|+++++||.|+.+.+                +.+...+..+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (200)
T d2bcjq2          75 LVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF  154 (200)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred             eeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence            99988753           34556777777766666889999999999974221                1223333333


Q ss_pred             HH----------hcCCeEEEeecCCCCChHHHHHHHHhhC
Q 030856          141 SR----------ELNVMFIETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       141 ~~----------~~~~~~~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                      ..          ...+.+++|||++|.|++++|+.+.+.|
T Consensus       155 i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I  194 (200)
T d2bcjq2         155 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI  194 (200)
T ss_dssp             HHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHH
Confidence            21          1235678999999999999999987653

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.94  E-value=3.9e-26  Score=148.70  Aligned_cols=157  Identities=21%  Similarity=0.226  Sum_probs=112.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEE
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i   86 (170)
                      .+..||+++|++|||||||++++.++.+... .++.+....  ....++  ..+.+||+.+...+...+..+....++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSE--ELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE--EEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcce-eccccccee--EEEecc--cccccccccchhhhhhHHhhhhcccceee
Confidence            5679999999999999999999998876533 333332222  233344  45789999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHH-hcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHH-----------------hcCCeE
Q 030856           87 VVYDVASRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----------------ELNVMF  148 (170)
Q Consensus        87 ~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~-----------------~~~~~~  148 (170)
                      +++|.+++..+.....++..... ....+.|+++++||.|+....  ...+......                 ..++++
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI--SEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC--CHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccC--CHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            99999999888877665554443 333789999999999986432  2333333322                 123479


Q ss_pred             EEeecCCCCChHHHHHHHHhhC
Q 030856          149 IETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       149 ~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                      ++|||++|+|++|+|+||+++|
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999999875

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=7.6e-27  Score=151.78  Aligned_cols=155  Identities=15%  Similarity=0.101  Sum_probs=102.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh-------hhhhhhhhcCCc
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRDSS   83 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~d   83 (170)
                      +|+++|.+|||||||+|+|++........+..+.+...... ......++.+|||||....       .......+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVV-EVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEE-ECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeecee-eecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            48999999999999999999765532222222222222222 2223346889999994321       112234467899


Q ss_pred             EEEEEEeCCCh--hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 030856           84 VAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG  161 (170)
Q Consensus        84 ~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~  161 (170)
                      ++++++|....  +.+.....|+....... .+.|+++|+||+|+.....  .+...+.....+.+++++||++|+|+++
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~iSA~tg~gid~  158 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPAL-LRRPSLVALNKVDLLEEEA--VKALADALAREGLAVLPVSALTGAGLPA  158 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHHH-HHSCEEEEEECCTTSCHHH--HHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhhhcccccccccchhhhhhhhhcccccc-chhhhhhhhhhhhhhhHHH--HHHHHHHHHhcCCeEEEEEcCCCCCHHH
Confidence            99999998653  23334444443332221 3579999999999865433  2444555666788999999999999999


Q ss_pred             HHHHHHhh
Q 030856          162 CSPTIRRL  169 (170)
Q Consensus       162 ~~~~l~~~  169 (170)
                      +++.|.+.
T Consensus       159 L~~~i~~~  166 (180)
T d1udxa2         159 LKEALHAL  166 (180)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999764

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.94  E-value=4.1e-26  Score=148.13  Aligned_cols=157  Identities=19%  Similarity=0.177  Sum_probs=104.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccce-------eeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhh
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQAT-------IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI   79 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   79 (170)
                      .+.++|+++|.+++|||||+|+|++.........+       .+...........+  ..+.++|+||+..+.......+
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l   80 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA   80 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhh
Confidence            57899999999999999999999965432111111       11111111222222  5688999999999999888899


Q ss_pred             cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC--HHHHHHHHHh----cCCeEEEeec
Q 030856           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEEGEAKSRE----LNVMFIETSA  153 (170)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~--~~~~~~~~~~----~~~~~~~~S~  153 (170)
                      ..+|++++++|+++....+... .+..+..   .++|+++|+||+|+.......  .+..+.+...    .+.+++++||
T Consensus        81 ~~~d~~ilv~d~~~g~~~~~~~-~~~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA  156 (179)
T d1wb1a4          81 DIIDLALIVVDAKEGPKTQTGE-HMLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA  156 (179)
T ss_dssp             TSCCEEEEEEETTTCSCHHHHH-HHHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred             hhccccccccccccccchhhhh-hhhhhhh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Confidence            9999999999998753332222 1122222   478999999999986543221  1122222221    2358999999


Q ss_pred             CCCCChHHHHHHHHhh
Q 030856          154 KAGFNIKGCSPTIRRL  169 (170)
Q Consensus       154 ~~~~~v~~~~~~l~~~  169 (170)
                      ++|+|++++++.|.+.
T Consensus       157 ~~g~gi~eL~~~I~~~  172 (179)
T d1wb1a4         157 KTGFGVDELKNLIITT  172 (179)
T ss_dssp             TTCTTHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHhc
Confidence            9999999999999875

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=7.8e-25  Score=141.07  Aligned_cols=152  Identities=19%  Similarity=0.184  Sum_probs=96.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh---------hhhhhhhhhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSYIR   80 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~   80 (170)
                      +|+++|.+|+|||||+++|++.... ....+..+..........  ....+.+||++|...         +.......+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW--YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEE--TTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccc--cccccccccccceeeeeccccccccccccccccc
Confidence            6899999999999999999986543 122222222222222322  335689999999321         2333445578


Q ss_pred             CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 030856           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~  160 (170)
                      .+|+++++.+.++...... ..++..+...   +.|+++|+||+|+.++.  ..+...++.+.....++++||++|.|++
T Consensus        80 ~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~---~~pviiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~i~iSAk~g~gid  153 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED-ESLADFLRKS---TVDTILVANKAENLREF--EREVKPELYSLGFGEPIPVSAEHNINLD  153 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH-HHHHHHHHHH---TCCEEEEEESCCSHHHH--HHHTHHHHGGGSSCSCEECBTTTTBSHH
T ss_pred             cCcEEEEeecccccccccc-cccccccccc---cccccccchhhhhhhhh--hhHHHHHHHhcCCCCeEEEecCCCCCHH
Confidence            8999999999876533322 3344444432   58999999999985422  2233333344444578999999999999


Q ss_pred             HHHHHHHhhC
Q 030856          161 GCSPTIRRLI  170 (170)
Q Consensus       161 ~~~~~l~~~i  170 (170)
                      +++++|.+.|
T Consensus       154 ~L~~~i~~~l  163 (171)
T d1mkya1         154 TMLETIIKKL  163 (171)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            9999998753

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=4.1e-25  Score=140.89  Aligned_cols=149  Identities=21%  Similarity=0.250  Sum_probs=101.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh---------hhhhhhhh
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIPSYI   79 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~   79 (170)
                      +||+++|.+|+|||||+|+|++.... ....+..+...........+  ..+.+|||||....         .......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            68999999999999999999976543 33333333344444444554  56889999993211         11223346


Q ss_pred             cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCCh
Q 030856           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (170)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v  159 (170)
                      ..+|++++++|.+++...+....+. .+     ...++++++||.|+.+...  .++... ....+.+++++||++|+|+
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~~-~~-----~~~~~i~~~~k~d~~~~~~--~~~~~~-~~~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKILE-RI-----KNKRYLVVINKVDVVEKIN--EEEIKN-KLGTDRHMVKISALKGEGL  149 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHHH-HH-----TTSSEEEEEEECSSCCCCC--HHHHHH-HHTCSTTEEEEEGGGTCCH
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhhh-hc-----ccccceeeeeeccccchhh--hHHHHH-HhCCCCcEEEEECCCCCCH
Confidence            7899999999999876554433221 11     3578899999999865432  233222 2234568999999999999


Q ss_pred             HHHHHHHHhh
Q 030856          160 KGCSPTIRRL  169 (170)
Q Consensus       160 ~~~~~~l~~~  169 (170)
                      ++++++|.+.
T Consensus       150 ~~L~~~I~ke  159 (160)
T d1xzpa2         150 EKLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999999864

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=1.7e-24  Score=141.17  Aligned_cols=157  Identities=22%  Similarity=0.243  Sum_probs=101.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh------------hhh
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER------------FRS   73 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------------~~~   73 (170)
                      ...+||+++|.+|+|||||+|+|++.... ....+..+..........++  ..+.++|+||...            ...
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~   83 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNY   83 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccchhH
Confidence            45699999999999999999999986542 12222332233333344454  3577889988542            222


Q ss_pred             hhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHh----c-CCeE
Q 030856           74 LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE----L-NVMF  148 (170)
Q Consensus        74 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~----~-~~~~  148 (170)
                      .....+..+|++++++|++.+..- ....++..+..   .+.|+++|+||+|+....+....+..+..+.    . ..++
T Consensus        84 ~~~~~~~~~dvii~v~d~~~~~~~-~~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i  159 (186)
T d1mkya2          84 RVVDSIEKADVVVIVLDATQGITR-QDQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL  159 (186)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhcCCEEEEeecccccchh-hHHHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeE
Confidence            344456789999999999864321 12223333332   4689999999999876555444443333332    2 3489


Q ss_pred             EEeecCCCCChHHHHHHHHhh
Q 030856          149 IETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       149 ~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      +++||++|.|+++++++|.+.
T Consensus       160 ~~vSa~~g~gv~~L~~~i~~~  180 (186)
T d1mkya2         160 IFTSADKGWNIDRMIDAMNLA  180 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHH
Confidence            999999999999999999764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.5e-25  Score=147.82  Aligned_cols=155  Identities=18%  Similarity=0.193  Sum_probs=106.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      +.+||+++|.+|||||||++++.   +...+.||.+.....  +..  ...++.+||++|++.++..+..++..++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~~--~~~--~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~   73 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEYD--FEI--KNVPFKMVDVGGQRSERKRWFECFDSVTSILF   73 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEEE--EEE--TTEEEEEEEECC-------CTTSCTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEEE--Eee--eeeeeeeecccceeeecccccccccccceeEE
Confidence            35899999999999999999994   334567787754433  333  44679999999999999999999999999999


Q ss_pred             EEeCCChhh----------HHhHHHHHHHHHH-hcCCCCeEEEEEeCCCCCCC----------------cccCHHHHHHH
Q 030856           88 VYDVASRQS----------FLNTSKWIDEVRT-ERGSDVIIVLVGNKTDLVEK----------------RQVSIEEGEAK  140 (170)
Q Consensus        88 v~d~~~~~~----------~~~~~~~~~~~~~-~~~~~~~~vvv~nK~D~~~~----------------~~~~~~~~~~~  140 (170)
                      +|+.++..+          ++....++..+.. ....+.|+++++||.|+.++                ..-..+.+.++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  153 (200)
T d1zcba2          74 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF  153 (200)
T ss_dssp             EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred             EEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHH
Confidence            999987533          3344444444433 33468999999999997421                11223344443


Q ss_pred             HHh-----------cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          141 SRE-----------LNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       141 ~~~-----------~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      ...           ..+.++++||+++.||+++|+.+.+.
T Consensus       154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~  193 (200)
T d1zcba2         154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDT  193 (200)
T ss_dssp             HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHH
Confidence            322           13567789999999999999988764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.92  E-value=4.2e-25  Score=143.83  Aligned_cols=148  Identities=22%  Similarity=0.299  Sum_probs=95.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh---------------hhhhhh
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------------RFRSLI   75 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------------~~~~~~   75 (170)
                      .|+++|.+|+|||||+|+|++........+..+.+..  .....    .+.++||||..               .+....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~--~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeeccc--ccccc----cceecccCCceeccccccccccccchhhhhhh
Confidence            5899999999999999999987765443443332322  22222    25789999941               112223


Q ss_pred             hhhhcCCcEEEEEEeCCChhhHHhH----------HHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhc-
Q 030856           76 PSYIRDSSVAVVVYDVASRQSFLNT----------SKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-  144 (170)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~~~~~~----------~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~-  144 (170)
                      ...++.+|++++++|.+.+......          ...+..+..   .+.|+++|+||+|+.+..+.   ....+.... 
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~~~---~~~~~~~~~~  149 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQE---VINFLAEKFE  149 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHHH---HHHHHHHHHT
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhHHH---HHHHHHHHhc
Confidence            4456789999999998754322111          112222222   47899999999997654332   122222222 


Q ss_pred             ------CCeEEEeecCCCCChHHHHHHHHhhC
Q 030856          145 ------NVMFIETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       145 ------~~~~~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                            ...++++||++|.|+++++++|.+.|
T Consensus       150 ~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l  181 (184)
T d2cxxa1         150 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVI  181 (184)
T ss_dssp             CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccccccCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence                  22589999999999999999998753

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=2.6e-23  Score=137.76  Aligned_cols=119  Identities=22%  Similarity=0.332  Sum_probs=87.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh-hhhhhhhcCCcEEEEEE
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~i~v~   89 (170)
                      +|+++|++|||||||++++.++.+... .++.+.+...... ..+....+.+||++|++.++ ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            799999999999999999999877544 3555544433332 24456789999999998875 46778889999999999


Q ss_pred             eCCChhh-HHhHHHHHHHHHH---hcCCCCeEEEEEeCCCCCCCcc
Q 030856           90 DVASRQS-FLNTSKWIDEVRT---ERGSDVIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        90 d~~~~~~-~~~~~~~~~~~~~---~~~~~~~~vvv~nK~D~~~~~~  131 (170)
                      |+++..+ +.....++..+..   ....++|+++|+||+|+..+..
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~  125 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS  125 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCC
Confidence            9998765 4455555544432   2235689999999999976443

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.91  E-value=2.7e-25  Score=144.98  Aligned_cols=154  Identities=18%  Similarity=0.077  Sum_probs=95.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhh----hh---hhhhcCCc
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----LI---PSYIRDSS   83 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~~---~~~~~~~d   83 (170)
                      +|+++|.+|||||||+|+|.+........+..+.+.........+ ...+.+|||||......    +.   ...+..++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecC-CcEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            689999999999999999998765322222222222222222222 13578999999533211    11   22345789


Q ss_pred             EEEEEEeCCChhhHHhHHH--HHHHHHHh---cCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHh--cCCeEEEeecCCC
Q 030856           84 VAVVVYDVASRQSFLNTSK--WIDEVRTE---RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE--LNVMFIETSAKAG  156 (170)
Q Consensus        84 ~~i~v~d~~~~~~~~~~~~--~~~~~~~~---~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~S~~~~  156 (170)
                      .++++++....+.......  +.......   ...+.|+++|+||+|+.+..    +..+.+...  .+.+++++||++|
T Consensus        82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~v~~iSA~~g  157 (185)
T d1lnza2          82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTR  157 (185)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred             hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH----HHHHHHHHHhccCCcEEEEECCCC
Confidence            9998888765432222211  11111111   12468999999999986532    223333333  3578999999999


Q ss_pred             CChHHHHHHHHhh
Q 030856          157 FNIKGCSPTIRRL  169 (170)
Q Consensus       157 ~~v~~~~~~l~~~  169 (170)
                      .|+++++++|.+.
T Consensus       158 ~Gi~~L~~~i~~~  170 (185)
T d1lnza2         158 EGLRELLFEVANQ  170 (185)
T ss_dssp             STTHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999875

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.91  E-value=3.3e-23  Score=136.00  Aligned_cols=163  Identities=18%  Similarity=0.167  Sum_probs=107.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCC---ccceee--eeeeEEEEE-------------------eCCeEEEEE
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT---YQATIG--IDFLSKTMY-------------------LEDRTVRLQ   61 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~---~~~~~~--~~~~~~~~~-------------------~~~~~~~~~   61 (170)
                      ..+.++|+++|..++|||||+++|.+......   ..+..+  ..+......                   .......+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            34678999999999999999999987533211   111111  111111100                   011245689


Q ss_pred             EEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc--CHHHHHH
Q 030856           62 LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEA  139 (170)
Q Consensus        62 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~--~~~~~~~  139 (170)
                      ++|+||+..|.......+..+|++++++|+.+....+...+.+..+....  ..+++++.||+|+.+....  ..+...+
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--~~~iiv~inK~D~~d~~~~~~~~~~~~~  159 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIKE  159 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc--CccceeeeecccchhhHHHHHHHHHHHH
Confidence            99999999999988888899999999999987532233333333333322  2457888999998654322  2333444


Q ss_pred             HHHhcC---CeEEEeecCCCCChHHHHHHHHhhC
Q 030856          140 KSRELN---VMFIETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       140 ~~~~~~---~~~~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                      +....+   ++++++||++|+|+++|++.|.++|
T Consensus       160 ~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         160 FIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            444433   5899999999999999999998764

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.90  E-value=4e-23  Score=135.63  Aligned_cols=157  Identities=14%  Similarity=0.161  Sum_probs=91.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh----------h---h
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------F---R   72 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~---~   72 (170)
                      ...-.+|+++|.+|||||||+|+|++...........+............   ...+.|++|...          .   .
T Consensus        20 ~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~   96 (195)
T d1svia_          20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHH
Confidence            33445899999999999999999998653222122111111111122222   234566665211          1   1


Q ss_pred             hhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHH----hcCCeE
Q 030856           73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR----ELNVMF  148 (170)
Q Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~  148 (170)
                      ......+..+|++++++|++++..- ....++..+..   .++|+++|+||+|+....+.. +..+.+.+    ..+.++
T Consensus        97 ~~~~~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~---~~~piivv~NK~D~~~~~~~~-~~~~~~~~~l~~~~~~~~  171 (195)
T d1svia_          97 ETYITTREELKAVVQIVDLRHAPSN-DDVQMYEFLKY---YGIPVIVIATKADKIPKGKWD-KHAKVVRQTLNIDPEDEL  171 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHH---TTCCEEEEEECGGGSCGGGHH-HHHHHHHHHHTCCTTSEE
T ss_pred             hhhhccccchhhhhhhhhccccccc-ccccccccccc---ccCcceechhhccccCHHHHH-HHHHHHHHHhcccCCCCE
Confidence            1222335567999999998865321 12333344433   368999999999986544332 22222222    234589


Q ss_pred             EEeecCCCCChHHHHHHHHhhC
Q 030856          149 IETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       149 ~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                      +++||++|.|+++++++|.+.|
T Consensus       172 ~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         172 ILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998753

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.90  E-value=1.4e-22  Score=133.96  Aligned_cols=163  Identities=17%  Similarity=0.130  Sum_probs=103.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCC---ccceeeeeee--EEEEE------------------------eCCe
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT---YQATIGIDFL--SKTMY------------------------LEDR   56 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~---~~~~~~~~~~--~~~~~------------------------~~~~   56 (170)
                      ..+.++|+++|..++|||||+++|++......   .......+..  .....                        ....
T Consensus         5 ~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (205)
T d2qn6a3           5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKF   84 (205)
T ss_dssp             CCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEE
T ss_pred             CCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccc
Confidence            35669999999999999999999986432110   0000000000  00000                        0112


Q ss_pred             EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC--H
Q 030856           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--I  134 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~--~  134 (170)
                      ..++.+.|+||+..|.......+..+|++|+|+|+.+.-.-...+..+..+.. . ...|+++++||+|+.+.....  .
T Consensus        85 ~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~-~-~i~~iIV~vNK~Dl~~~~~~~~~~  162 (205)
T d2qn6a3          85 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI-I-GVKNLIIVQNKVDVVSKEEALSQY  162 (205)
T ss_dssp             EEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-T-TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             eEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHH-c-CCceeeeccccCCCccchHHHHHH
Confidence            34689999999999988888888999999999999864211122222222222 2 124788899999997543221  2


Q ss_pred             HHHHHHHHhc---CCeEEEeecCCCCChHHHHHHHHhhC
Q 030856          135 EEGEAKSREL---NVMFIETSAKAGFNIKGCSPTIRRLI  170 (170)
Q Consensus       135 ~~~~~~~~~~---~~~~~~~S~~~~~~v~~~~~~l~~~i  170 (170)
                      .....+....   +++++++||++|.|++++++.|.++|
T Consensus       163 ~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         163 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence            2233333333   36899999999999999999998764

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.90  E-value=1.2e-23  Score=141.11  Aligned_cols=154  Identities=18%  Similarity=0.159  Sum_probs=97.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEE----------------EeCCeEEEEEEEecCChhhhhhh
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTM----------------YLEDRTVRLQLWDTAGQERFRSL   74 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~i~D~~g~~~~~~~   74 (170)
                      .|+|+|.+++|||||+++|++...........+........                .+.....++.++||||+..|...
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~   86 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTL   86 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTS
T ss_pred             EEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccccc
Confidence            39999999999999999998643211111111100001000                11223346899999999999888


Q ss_pred             hhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC--------------------H
Q 030856           75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--------------------I  134 (170)
Q Consensus        75 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~--------------------~  134 (170)
                      ....+..+|++|+|+|+.+.-.-+. ...+..+..   .++|+++|+||+|+.......                    .
T Consensus        87 ~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  162 (227)
T d1g7sa4          87 RKRGGALADLAILIVDINEGFKPQT-QEALNILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD  162 (227)
T ss_dssp             BCSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHH
T ss_pred             chhcccccceEEEEEecccCcccch-hHHHHHhhc---CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHH
Confidence            8888899999999999986432222 222222222   478999999999986532211                    0


Q ss_pred             HHHH----HHHHh--------------cCCeEEEeecCCCCChHHHHHHHHh
Q 030856          135 EEGE----AKSRE--------------LNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus       135 ~~~~----~~~~~--------------~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      ....    .+...              ..++++++||.+|.|++++++.|.+
T Consensus       163 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~  214 (227)
T d1g7sa4         163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMG  214 (227)
T ss_dssp             HHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            0010    11110              0137899999999999999998865

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=1.9e-23  Score=139.57  Aligned_cols=154  Identities=19%  Similarity=0.193  Sum_probs=108.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEE
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~   87 (170)
                      ...||+++|..|||||||++++....    ..||.+....  .+..++  +.+.+||++|++.++..+..++.+++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~----~~pTiG~~~~--~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~   76 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILH----VVLTSGIFET--KFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIF   76 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHH----CCCCCSCEEE--EEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCC----cCCCCCeEEE--EEEECc--EEEEEEecCccceeccchhhhcccccceEE
Confidence            45899999999999999999997554    3466664433  333444  679999999999999999999999999999


Q ss_pred             EEeCCChh----------hHHhHHHHHHH-HHHhcCCCCeEEEEEeCCCCCCCcc-------------------------
Q 030856           88 VYDVASRQ----------SFLNTSKWIDE-VRTERGSDVIIVLVGNKTDLVEKRQ-------------------------  131 (170)
Q Consensus        88 v~d~~~~~----------~~~~~~~~~~~-~~~~~~~~~~~vvv~nK~D~~~~~~-------------------------  131 (170)
                      ++|.++..          .+.+...++.. +......++|++|++||+|+.+++.                         
T Consensus        77 v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~  156 (221)
T d1azta2          77 VVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATP  156 (221)
T ss_dssp             EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCC
T ss_pred             EEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccc
Confidence            99988532          23333333333 3333336899999999999853210                         


Q ss_pred             -----cCHHHHHHHHH-----h--------cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          132 -----VSIEEGEAKSR-----E--------LNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       132 -----~~~~~~~~~~~-----~--------~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                           ....++..+.+     .        ..+..+.+||.++.+++.+|+.+.+.
T Consensus       157 ~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~  212 (221)
T d1azta2         157 EPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDI  212 (221)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHH
T ss_pred             cCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHH
Confidence                 01222323221     1        12456789999999999999876543

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.88  E-value=1.3e-22  Score=132.61  Aligned_cols=158  Identities=13%  Similarity=0.052  Sum_probs=105.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC----------------CCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD----------------KFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   71 (170)
                      +.+||+++|..++|||||+++|++.                ..+.+..+..+.+....  .+......+.++|+||+.+|
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~--~~~~~~~~~~~iDtPGh~~f   79 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHV--EYSTAARHYAHTDCPGHADY   79 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEE--EEECSSCEEEEEECSSHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceE--EEEeceeeEEeecCcchHHH
Confidence            4699999999999999999999741                11112222233333333  33334457899999999999


Q ss_pred             hhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCccc---CHHHHHHHHHhcC---
Q 030856           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV---SIEEGEAKSRELN---  145 (170)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~---~~~~~~~~~~~~~---  145 (170)
                      .......+..+|++++|+|+.+...-+. .+.+..+...  ...|+++++||+|+....+.   -..+.+.+....+   
T Consensus        80 ~~~~~~~~~~aD~allVVda~~G~~~QT-~~~~~~a~~~--~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~  156 (196)
T d1d2ea3          80 VKNMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG  156 (196)
T ss_dssp             HHHHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHhhcCeEEEEEEcCCCCchhH-HHHHHHHHHh--cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCc
Confidence            9888888999999999999986532222 2222222222  23578889999998653221   1123444444443   


Q ss_pred             --CeEEEeecCCC----------CChHHHHHHHHhhC
Q 030856          146 --VMFIETSAKAG----------FNIKGCSPTIRRLI  170 (170)
Q Consensus       146 --~~~~~~S~~~~----------~~v~~~~~~l~~~i  170 (170)
                        ++++++|+++|          .++.++++.|.+++
T Consensus       157 ~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             ccCEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence              57999999998          58899999887654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=3.2e-21  Score=124.70  Aligned_cols=153  Identities=16%  Similarity=0.242  Sum_probs=97.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh---------hhhhhhhhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIPSYIR   80 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~   80 (170)
                      .|+++|.+|||||||+|+|++.... ....+.............+.  ..+..+|++|....         .........
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASSSIG   84 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhccccchh
Confidence            5899999999999999999987543 22222222222222333333  24567888874321         112222234


Q ss_pred             CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCC-eEEEeecCCCCCh
Q 030856           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNI  159 (170)
Q Consensus        81 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~v  159 (170)
                      .+++++++.|..+...  ....+...+.   ....|.++|+||.|............+......+. +++++||++|.|+
T Consensus        85 ~~~~~l~~~d~~~~~~--~~~~~~~~l~---~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi  159 (179)
T d1egaa1          85 DVELVIFVVEGTRWTP--DDEMVLNKLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNV  159 (179)
T ss_dssp             CEEEEEEEEETTCCCH--HHHHHHHHHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred             hcceeEEEEecCccch--hHHHHHHHhh---hccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCCH
Confidence            6788888888775322  1122222222   24578899999999876554444555666666664 8999999999999


Q ss_pred             HHHHHHHHhhC
Q 030856          160 KGCSPTIRRLI  170 (170)
Q Consensus       160 ~~~~~~l~~~i  170 (170)
                      ++++++|.+++
T Consensus       160 ~~L~~~i~~~l  170 (179)
T d1egaa1         160 DTIAAIVRKHL  170 (179)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHHhC
Confidence            99999998764

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=2.7e-21  Score=127.30  Aligned_cols=142  Identities=18%  Similarity=0.127  Sum_probs=93.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC------CC-----------CCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD------KF-----------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   70 (170)
                      +++||+++|..++|||||+++|++.      ..           +.+..+..+.+.....+..++  .++.|+||||+..
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~d   79 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHAD   79 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCchh
Confidence            5699999999999999999999732      00           011111233344444444444  5678999999999


Q ss_pred             hhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCccc---CHHHHHHHHHhcC-
Q 030856           71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSRELN-  145 (170)
Q Consensus        71 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~~~~~---~~~~~~~~~~~~~-  145 (170)
                      |.......+..+|++|+|+|+.+....+....| ..+..   .++| +++++||+|+.+..+.   -..+.+.+....+ 
T Consensus        80 f~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~-~~~~~---~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~  155 (204)
T d2c78a3          80 YIKNMITGAAQMDGAILVVSAADGPMPQTREHI-LLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF  155 (204)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHH-HHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHH-HHHHH---cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCC
Confidence            999988999999999999999876444443333 22222   3565 7778999998653221   1123333333332 


Q ss_pred             ----CeEEEeecCC
Q 030856          146 ----VMFIETSAKA  155 (170)
Q Consensus       146 ----~~~~~~S~~~  155 (170)
                          +++++.|+..
T Consensus       156 ~~~~i~~i~~sa~~  169 (204)
T d2c78a3         156 PGDEVPVIRGSALL  169 (204)
T ss_dssp             CTTTSCEEECCHHH
T ss_pred             Ccccceeeeeechh
Confidence                4788888753

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.84  E-value=2.9e-20  Score=123.60  Aligned_cols=153  Identities=17%  Similarity=0.189  Sum_probs=99.7

Q ss_pred             CCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCC--CC-------------------------------CccceeeeeeeE
Q 030856            2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKF--DN-------------------------------TYQATIGIDFLS   48 (170)
Q Consensus         2 ~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~--~~-------------------------------~~~~~~~~~~~~   48 (170)
                      .+.+....+||+++|..++|||||+++|+....  ..                               ......+.+...
T Consensus         2 ~~~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~   81 (222)
T d1zunb3           2 GQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAY   81 (222)
T ss_dssp             CSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEE
T ss_pred             cccccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeE
Confidence            455667789999999999999999999974211  00                               000111112222


Q ss_pred             EEEEeCCeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCC
Q 030856           49 KTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLV  127 (170)
Q Consensus        49 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~  127 (170)
                      ....  .....+.++|+||+..|.......+..+|++++|+|+.+...-+.  .....+...  .+++ +++++||+|+.
T Consensus        82 ~~~~--~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt--~e~~~~~~~--~gv~~iiv~vNK~D~~  155 (222)
T d1zunb3          82 RYFS--TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT--RRHSYIASL--LGIKHIVVAINKMDLN  155 (222)
T ss_dssp             EEEE--CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH--HHHHHHHHH--TTCCEEEEEEECTTTT
T ss_pred             EEEe--ccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccch--HHHHHHHHH--cCCCEEEEEEEccccc
Confidence            2222  233578999999999999998889999999999999986432222  222223333  2444 78899999997


Q ss_pred             CCcccC----HHHHHHHHHhcC-----CeEEEeecCCCCChH
Q 030856          128 EKRQVS----IEEGEAKSRELN-----VMFIETSAKAGFNIK  160 (170)
Q Consensus       128 ~~~~~~----~~~~~~~~~~~~-----~~~~~~S~~~~~~v~  160 (170)
                      +..+..    ..+...+....+     ++++++||.+|+|+.
T Consensus       156 ~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         156 GFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             TSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             cccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            644322    223444555544     378999999999884

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=3.4e-20  Score=122.56  Aligned_cols=115  Identities=17%  Similarity=0.254  Sum_probs=80.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhhhh----hcCCcE
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY----IRDSSV   84 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~----~~~~d~   84 (170)
                      +.+|+++|++|+|||||+|+|.++....    +.+.......  .......+.+||+||++.+...+..+    ...++.
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~----~tt~~~~~~~--~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSA--ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG   76 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCC----BCCCSSCEEE--TTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCC----eEEecceEEE--EEeCCeEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence            4689999999999999999999876542    2222222222  33334568899999988766555444    445689


Q ss_pred             EEEEEeCCC-hhhHHhHHHHHHH----HHHhcCCCCeEEEEEeCCCCCCC
Q 030856           85 AVVVYDVAS-RQSFLNTSKWIDE----VRTERGSDVIIVLVGNKTDLVEK  129 (170)
Q Consensus        85 ~i~v~d~~~-~~~~~~~~~~~~~----~~~~~~~~~~~vvv~nK~D~~~~  129 (170)
                      +++++|..+ ..+++....|+..    +......+.|+++|+||+|+...
T Consensus        77 ~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          77 LIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             cceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            999999764 5556666555443    34445578999999999998654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=4.6e-19  Score=120.68  Aligned_cols=114  Identities=20%  Similarity=0.262  Sum_probs=82.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC--C----------------CCccceeeeeeeEEEEEeCCeEEEEEEEecCChh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKF--D----------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   69 (170)
                      +-.||+++|+.++|||||+.+++....  .                .+..+..++......+.+++  .++.++||||+.
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~~   82 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGHV   82 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSSS
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCchh
Confidence            345799999999999999999974211  0                11111222233333344444  679999999999


Q ss_pred             hhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        70 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~  127 (170)
                      +|.......+..+|+.|+|+|+.+.-.-+..+.| ....   ..++|.++++||+|..
T Consensus        83 dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~---~~~lP~i~fINKmDr~  136 (276)
T d2bv3a2          83 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAE---KYKVPRIAFANKMDKT  136 (276)
T ss_dssp             SCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHH---TTTCCEEEEEECTTST
T ss_pred             hhHHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHH---HcCCCEEEEEeccccc
Confidence            9999999999999999999999987555555555 2222   2479999999999985

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=4.6e-20  Score=119.81  Aligned_cols=164  Identities=13%  Similarity=0.100  Sum_probs=85.1

Q ss_pred             CCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChh-------hhhhh
Q 030856            2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-------RFRSL   74 (170)
Q Consensus         2 ~~~~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-------~~~~~   74 (170)
                      .+.+....++|+++|.+|+|||||+|+|.+...........+................+..++.++..       .....
T Consensus         9 ~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (188)
T d1puia_           9 RHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRA   88 (188)
T ss_dssp             GGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHH
T ss_pred             hHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhh
Confidence            45567788999999999999999999999876543222221111111111111122122222222211       11111


Q ss_pred             ---hhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC--HHHHHHHHHhc--CCe
Q 030856           75 ---IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEEGEAKSREL--NVM  147 (170)
Q Consensus        75 ---~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~--~~~~~~~~~~~--~~~  147 (170)
                         ........+.++.+.+........ ...++..+..   ...++++++||+|+.......  .+..++.....  ..+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~  164 (188)
T d1puia_          89 LGEYLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ  164 (188)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred             hhhhhhhhhheeEEEEeecccccchhH-HHHHHHHhhh---ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCc
Confidence               111123344555566655432222 2233333332   467899999999986532221  12222223222  248


Q ss_pred             EEEeecCCCCChHHHHHHHHhh
Q 030856          148 FIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       148 ~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      ++++||++|.|++++++.|.+.
T Consensus       165 ~i~vSA~~g~Gid~L~~~i~~~  186 (188)
T d1puia_         165 VETFSSLKKQGVDKLRQKLDTW  186 (188)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999999999998764

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=3.9e-19  Score=119.31  Aligned_cols=149  Identities=17%  Similarity=0.210  Sum_probs=98.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC--CCC-----------------------------CCccceeeeeeeEEEEEeCC
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFD-----------------------------NTYQATIGIDFLSKTMYLED   55 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   55 (170)
                      ..+++|+++|..++|||||+.+|+..  ..+                             .+..+..+.+.....+...+
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~   83 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   83 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence            34699999999999999999999631  100                             01112233333344444444


Q ss_pred             eEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhh---H--H-hHHHHHHHHHHhcCCCCe-EEEEEeCCCCCC
Q 030856           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQS---F--L-NTSKWIDEVRTERGSDVI-IVLVGNKTDLVE  128 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~--~-~~~~~~~~~~~~~~~~~~-~vvv~nK~D~~~  128 (170)
                        .++.|.|+||+.+|.......+..+|++|+|+|+.....   +  + .....+ .+...  .++| +++++||+|+.+
T Consensus        84 --~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~-~~~~~--~gv~~iiv~iNKmD~~~  158 (239)
T d1f60a3          84 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHA-LLAFT--LGVRQLIVAVNKMDSVK  158 (239)
T ss_dssp             --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHH-HHHHH--TTCCEEEEEEECGGGGT
T ss_pred             --EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHH-HHHHH--cCCCeEEEEEECCCCCC
Confidence              689999999999999999999999999999999985321   0  1 122222 22222  2455 788999999876


Q ss_pred             CcccCH----HHHHHHHHhcC-----CeEEEeecCCCCChH
Q 030856          129 KRQVSI----EEGEAKSRELN-----VMFIETSAKAGFNIK  160 (170)
Q Consensus       129 ~~~~~~----~~~~~~~~~~~-----~~~~~~S~~~~~~v~  160 (170)
                      ..+...    .+...+....+     ++++++|+..|.|+-
T Consensus       159 ~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~  199 (239)
T d1f60a3         159 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI  199 (239)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcce
Confidence            543222    33444444443     478999999998863

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.77  E-value=2.3e-18  Score=116.91  Aligned_cols=112  Identities=15%  Similarity=0.196  Sum_probs=80.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC----C--------------CccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFD----N--------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~----~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   71 (170)
                      .+|+++|+.++|||||+.+++.....    .              +.....+.......+.+++  .++.++||||+.+|
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF   80 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDF   80 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGG
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhh
Confidence            47999999999999999999642110    0              0111223333334444444  57899999999999


Q ss_pred             hhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~  127 (170)
                      .......+..+|++|+|+|+.+.-..+....| .....   .++|.++++||+|..
T Consensus        81 ~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~-~~~~~---~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          81 VGEIRGALEAADAALVAVSAEAGVQVGTERAW-TVAER---LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCEEEEEECGGGC
T ss_pred             hhhhhhhhcccCceEEEeeccCCccchhHHHH-Hhhhh---ccccccccccccccc
Confidence            99999999999999999999976555554544 22332   479999999999974

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.76  E-value=3.4e-19  Score=120.16  Aligned_cols=153  Identities=18%  Similarity=0.209  Sum_probs=83.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCC-------------------------------CCccceeeeeeeEEEEEeC
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD-------------------------------NTYQATIGIDFLSKTMYLE   54 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~   54 (170)
                      ....++|+++|..++|||||+.+|+...-.                               .+..+....+........ 
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~-   99 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-   99 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-
T ss_pred             CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc-
Confidence            345789999999999999999999631110                               000111111111122222 


Q ss_pred             CeEEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhh---HH---hHHHHHHHHHHhcCCCC-eEEEEEeCCCCC
Q 030856           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQS---FL---NTSKWIDEVRTERGSDV-IIVLVGNKTDLV  127 (170)
Q Consensus        55 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~-~~vvv~nK~D~~  127 (170)
                       ....+.+.|+||+..|..........+|++++|+|+.+...   +.   .....+..+..   .++ ++++++||+|+.
T Consensus       100 -~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~---~~i~~iiv~iNKmD~~  175 (245)
T d1r5ba3         100 -EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART---QGINHLVVVINKMDEP  175 (245)
T ss_dssp             -SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH---TTCSSEEEEEECTTST
T ss_pred             -ccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH---cCCCeEEEEEEcCCCC
Confidence             23568999999999999998888999999999999986421   11   22333222222   234 478889999986


Q ss_pred             CCcc--cCH----HHHHHHHHhc-------CCeEEEeecCCCCChHHHH
Q 030856          128 EKRQ--VSI----EEGEAKSREL-------NVMFIETSAKAGFNIKGCS  163 (170)
Q Consensus       128 ~~~~--~~~----~~~~~~~~~~-------~~~~~~~S~~~~~~v~~~~  163 (170)
                      ....  ...    ++...+....       .++++++||++|+|+.+++
T Consensus       176 ~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         176 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            4221  111    2222222222       2589999999999998754

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.75  E-value=3.8e-18  Score=113.76  Aligned_cols=150  Identities=19%  Similarity=0.260  Sum_probs=92.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC--C-----------------------------CCccceeeeeeeEEEEEeCCe
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKF--D-----------------------------NTYQATIGIDFLSKTMYLEDR   56 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~   56 (170)
                      +.+||+++|..++|||||+.+|+...-  .                             .+..+..+.+......  +..
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~--~~~   79 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF--ETK   79 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE--ECS
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEE--ecC
Confidence            468999999999999999999864210  0                             0111112222222222  233


Q ss_pred             EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhH------HhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc
Q 030856           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSF------LNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~  130 (170)
                      ...+.++||||+..|.......+.-+|+.|+|+|+.+...-      ....+.+.... .. ...++++++||+|+....
T Consensus        80 ~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~-~~-~~~~iIv~iNK~D~~~~~  157 (224)
T d1jnya3          80 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAK-TM-GLDQLIVAVNKMDLTEPP  157 (224)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHH-HT-TCTTCEEEEECGGGSSST
T ss_pred             CceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHH-Hh-CCCceEEEEEcccCCCcc
Confidence            46789999999999999999999999999999999874211      11222222222 22 234578889999986422


Q ss_pred             --ccC----HHHHHHHHHhc-----CCeEEEeecCCCCChHH
Q 030856          131 --QVS----IEEGEAKSREL-----NVMFIETSAKAGFNIKG  161 (170)
Q Consensus       131 --~~~----~~~~~~~~~~~-----~~~~~~~S~~~~~~v~~  161 (170)
                        ...    ......+...+     .++++++||..|.|+.+
T Consensus       158 ~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         158 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             ccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence              111    12233333333     34789999999999854

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=5.4e-17  Score=116.52  Aligned_cols=155  Identities=12%  Similarity=0.089  Sum_probs=88.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCCccce---eeeeeeEEEEEeCCeEEEEEEEecCChhhhhhhhh-----hhh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQAT---IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP-----SYI   79 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-----~~~   79 (170)
                      .+++|+++|.+|+|||||+|+|++..........   .+.+.........+ ...+.+|||||.........     ..+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccC-CCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            4699999999999999999999986543221111   11111111122221 12478999999654332222     235


Q ss_pred             cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC-------CcccCHH----HHHHH----HHhc
Q 030856           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE-------KRQVSIE----EGEAK----SREL  144 (170)
Q Consensus        80 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~-------~~~~~~~----~~~~~----~~~~  144 (170)
                      ..+|.++++.|..-.+   .-...+..+..   .+.|+++|.||+|...       ......+    +.++.    ....
T Consensus       134 ~~~d~~l~~~~~~~~~---~d~~l~~~l~~---~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~  207 (400)
T d1tq4a_         134 YEYDFFIIISATRFKK---NDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  207 (400)
T ss_dssp             GGCSEEEEEESSCCCH---HHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             hcceEEEEecCCCCCH---HHHHHHHHHHH---cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHc
Confidence            5789888887743211   11223333333   3689999999999631       1111111    11111    2222


Q ss_pred             CC---eEEEeecCC--CCChHHHHHHHHhh
Q 030856          145 NV---MFIETSAKA--GFNIKGCSPTIRRL  169 (170)
Q Consensus       145 ~~---~~~~~S~~~--~~~v~~~~~~l~~~  169 (170)
                      ++   +++.+|..+  ..++.++.+.+.+.
T Consensus       208 ~~~~~~vflvS~~~~~~~d~~~L~~~l~~~  237 (400)
T d1tq4a_         208 GIAEPPIFLLSNKNVCHYDFPVLMDKLISD  237 (400)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHH
T ss_pred             CCCCCCEEEecCCcccccCHHHHHHHHHHH
Confidence            33   678888764  44889999888764

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.69  E-value=4.3e-16  Score=105.67  Aligned_cols=126  Identities=12%  Similarity=0.116  Sum_probs=78.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCC-CccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhh-------hhhhh
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLIPS   77 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~   77 (170)
                      ....++|+++|.+|+|||||+|+++++.... +..+..+.+.........+  ..+.++||||..+..       .....
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~  106 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKS  106 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHH
Confidence            3567999999999999999999999876542 2223333344444445555  468999999943221       11111


Q ss_pred             h--hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCC--CeEEEEEeCCCCCCCcccC
Q 030856           78 Y--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD--VIIVLVGNKTDLVEKRQVS  133 (170)
Q Consensus        78 ~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~vvv~nK~D~~~~~~~~  133 (170)
                      +  ....++++||++++...--......+..+...++++  .++++|.||+|........
T Consensus       107 ~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~  166 (257)
T d1h65a_         107 FLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLP  166 (257)
T ss_dssp             HTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCC
T ss_pred             HHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCc
Confidence            2  234688999988765321122233344444444433  4689999999987654443

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=3.7e-16  Score=109.28  Aligned_cols=116  Identities=18%  Similarity=0.273  Sum_probs=80.3

Q ss_pred             Cce-eEEEEcCCCCCHHHHHHHHhcCC--C--------------CCCccceeeeeeeEEEEEe--------------CCe
Q 030856            8 AKY-KLVFLGDQSVGKTSIITRFMYDK--F--------------DNTYQATIGIDFLSKTMYL--------------EDR   56 (170)
Q Consensus         8 ~~~-~i~i~G~~~~GKStll~~l~~~~--~--------------~~~~~~~~~~~~~~~~~~~--------------~~~   56 (170)
                      .++ +|+++|..++|||||+++|+...  .              +.+..+..+..........              ++.
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~   94 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   94 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence            345 69999999999999999997311  0              0111112222222222211              335


Q ss_pred             EEEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~  127 (170)
                      .+.+.++||||+.+|.......++.+|++++|+|+.+.-..+....|....    ..++|+++++||+|+.
T Consensus        95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~----~~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL----GERIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH----HTTCEEEEEEECHHHH
T ss_pred             ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHH----HcCCCeEEEEECcccc
Confidence            678999999999999999999999999999999999765555544443322    2479999999999974

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.56  E-value=1.1e-15  Score=102.73  Aligned_cols=109  Identities=14%  Similarity=-0.014  Sum_probs=65.1

Q ss_pred             EEEEEecCChhhhhhhhhhh---h--cCCcEEEEEEeCCC---hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc
Q 030856           59 RLQLWDTAGQERFRSLIPSY---I--RDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (170)
Q Consensus        59 ~~~i~D~~g~~~~~~~~~~~---~--~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~  130 (170)
                      .+.+.|+||+.++.......   .  ...+.++++.|+..   +..+.............  -..|.++|+||+|+....
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~--~~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSEE  173 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCHH
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH--hCCCceeeeeccccccHH
Confidence            48889999987654432222   1  24568889998753   33332222111111111  368899999999987532


Q ss_pred             ccCH-----------------------HHHHHH---HH--hcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          131 QVSI-----------------------EEGEAK---SR--ELNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       131 ~~~~-----------------------~~~~~~---~~--~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      +...                       ......   ..  ...++++++||++|+|+++++..|.+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            2110                       000000   11  124689999999999999999998763

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.53  E-value=2.4e-14  Score=99.68  Aligned_cols=101  Identities=12%  Similarity=0.038  Sum_probs=62.3

Q ss_pred             EEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHH
Q 030856           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG  137 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~  137 (170)
                      +.+.|++|.|...-   .......+|.++++......+..+..+.-+-        ..+-++|+||+|+.+.........
T Consensus       144 ~d~iiiETVG~gq~---e~~~~~~~D~~v~v~~p~~GD~iQ~~k~gil--------E~aDi~vvNKaD~~~~~~~~~~~~  212 (323)
T d2qm8a1         144 FDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKGIF--------ELADMIAVNKADDGDGERRASAAA  212 (323)
T ss_dssp             CCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCTTHH--------HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCeEEEeehhhhhh---hhhhhcccceEEEEeeccchhhhhhhhhhHh--------hhhheeeEeccccccchHHHHHHH
Confidence            46788888885432   2223456999999999887655544332211        133488889999865444322222


Q ss_pred             HHHHHh----------cCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          138 EAKSRE----------LNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       138 ~~~~~~----------~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      ..+...          ...+++.+||.++.|+++++++|.+.
T Consensus       213 ~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~  254 (323)
T d2qm8a1         213 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDH  254 (323)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHH
Confidence            222221          34589999999999999999998653

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=4e-14  Score=98.62  Aligned_cols=99  Identities=17%  Similarity=0.053  Sum_probs=58.7

Q ss_pred             EEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC--HHH
Q 030856           59 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEE  136 (170)
Q Consensus        59 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~--~~~  136 (170)
                      .+.+++|.|...-   .......+|.+++|.+....+..+..+.-+-++        +-++|+||+|........  ..+
T Consensus       148 d~iliEtvG~gq~---e~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~--------aDi~VvNKaD~~~~~~~~~~~~~  216 (327)
T d2p67a1         148 DVVIVETVGVGQS---ETEVARMVDCFISLQIAGGGDDLQGIKKGLMEV--------ADLIVINKDDGDNHTNVAIARHM  216 (327)
T ss_dssp             SEEEEEEECCTTH---HHHHHTTCSEEEEEECC------CCCCHHHHHH--------CSEEEECCCCTTCHHHHHHHHHH
T ss_pred             CeEEEeecccccc---chhhhhccceEEEEecCCCchhhhhhchhhhcc--------ccEEEEEeecccchHHHHHHHHH
Confidence            4667777774321   223456799999999877665555544433322        237788999986533221  111


Q ss_pred             HHHHHH-------hcCCeEEEeecCCCCChHHHHHHHHh
Q 030856          137 GEAKSR-------ELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus       137 ~~~~~~-------~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      .+...+       ....+++.|||.+|+|++++++.|.+
T Consensus       217 ~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~  255 (327)
T d2p67a1         217 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIID  255 (327)
T ss_dssp             HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHH
T ss_pred             HHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHH
Confidence            122111       22348999999999999999999875

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.49  E-value=2.5e-13  Score=92.93  Aligned_cols=84  Identities=15%  Similarity=0.184  Sum_probs=51.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCe------------E---EEEEEEecCChhh---
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR------------T---VRLQLWDTAGQER---   70 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~---~~~~i~D~~g~~~---   70 (170)
                      .++|++||.|+||||||+++++.........|..+.+.-...+.+++.            .   ..+.+.|.||.-.   
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            379999999999999999999987665333333333322222322221            1   2588999999321   


Q ss_pred             ----hhhhhhhhhcCCcEEEEEEeCC
Q 030856           71 ----FRSLIPSYIRDSSVAVVVYDVA   92 (170)
Q Consensus        71 ----~~~~~~~~~~~~d~~i~v~d~~   92 (170)
                          .....-..++++|+++.|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence                1112333477899999999864

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.43  E-value=1.6e-12  Score=89.65  Aligned_cols=86  Identities=19%  Similarity=0.201  Sum_probs=56.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCC--CCCccceeeeeeeEEEEEeCC---------------eEEEEEEEecCChh
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--DNTYQATIGIDFLSKTMYLED---------------RTVRLQLWDTAGQE   69 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~g~~   69 (170)
                      ...++|+++|.|+||||||+|+++....  ..+| |..+.+.....+.+++               ....+.+.|.||..
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~any-pftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv   86 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANY-PYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT   86 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCC-SSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCC-CccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccc
Confidence            4679999999999999999999997643  2333 3333332222233322               12468899999833


Q ss_pred             h-------hhhhhhhhhcCCcEEEEEEeCCC
Q 030856           70 R-------FRSLIPSYIRDSSVAVVVYDVAS   93 (170)
Q Consensus        70 ~-------~~~~~~~~~~~~d~~i~v~d~~~   93 (170)
                      .       .....-..++++|+++.|+|+.+
T Consensus        87 ~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          87 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccccHHHHHHHhhccceeEEEEeccC
Confidence            2       11223344679999999999864

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=3.3e-11  Score=83.07  Aligned_cols=119  Identities=19%  Similarity=0.269  Sum_probs=71.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC-CCCccceeeeeeeEEEE-----------------------------------
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTM-----------------------------------   51 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~-~~~~~~~~~~~~~~~~~-----------------------------------   51 (170)
                      ...+|+++|..++|||||+|+|++..+ +....+++..-......                                   
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence            456899999999999999999999875 44333332111110000                                   


Q ss_pred             ---------------EeCCeEEEEEEEecCChhh-------------hhhhhhhhhcCCcE-EEEEEeCCChhhHHhHHH
Q 030856           52 ---------------YLEDRTVRLQLWDTAGQER-------------FRSLIPSYIRDSSV-AVVVYDVASRQSFLNTSK  102 (170)
Q Consensus        52 ---------------~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~d~-~i~v~d~~~~~~~~~~~~  102 (170)
                                     .... ...+.++|+||...             ...+...|+...+. ++++.+++..-+-.....
T Consensus       105 ~~~~~~~~~~i~l~~~~p~-~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~  183 (299)
T d2akab1         105 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  183 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETT-CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred             CCCcCcCCccEEEEEcCCC-CCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHH
Confidence                           0000 01378999999432             23456667777774 555666654433333344


Q ss_pred             HHHHHHHhcCCCCeEEEEEeCCCCCCCc
Q 030856          103 WIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (170)
Q Consensus       103 ~~~~~~~~~~~~~~~vvv~nK~D~~~~~  130 (170)
                      +...+   .....++++|+||+|.....
T Consensus       184 ~~~~~---~~~~~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         184 IAKEV---DPQGQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHHHH---CTTCSSEEEEEECGGGSCTT
T ss_pred             HHHHh---CcCCCceeeEEeccccccch
Confidence            43333   22456799999999987543

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.25  E-value=8.2e-12  Score=86.93  Aligned_cols=84  Identities=17%  Similarity=0.140  Sum_probs=44.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCCccceeeeeee------EEEEE----------------eCCeEEEEEEEecCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFL------SKTMY----------------LEDRTVRLQLWDTAG   67 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~~~~~~~~~~~------~~~~~----------------~~~~~~~~~i~D~~g   67 (170)
                      ++|+++|.|+||||||+|+|++.+......|..+.+..      .....                ......++.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            58999999999999999999987665333333222211      11000                011235799999999


Q ss_pred             hhhh----hhh---hhhhhcCCcEEEEEEeCCC
Q 030856           68 QERF----RSL---IPSYIRDSSVAVVVYDVAS   93 (170)
Q Consensus        68 ~~~~----~~~---~~~~~~~~d~~i~v~d~~~   93 (170)
                      .-.-    ..+   .-..++++|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            4321    111   1223568999999999863

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.18  E-value=1.2e-10  Score=80.40  Aligned_cols=68  Identities=22%  Similarity=0.298  Sum_probs=42.0

Q ss_pred             EEEEEecCChhh-------------hhhhhhhhhcCCcEEEEEE-eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCC
Q 030856           59 RLQLWDTAGQER-------------FRSLIPSYIRDSSVAVVVY-DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT  124 (170)
Q Consensus        59 ~~~i~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~  124 (170)
                      .+.++|+||...             ...+...|+.+++.+++++ +......-.....+...+   .+....+++|+||+
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~---~~~~~r~i~Vitk~  208 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITKL  208 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEECT
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHh---CcCCCeEEEEEecc
Confidence            478999999432             2356777888999876665 443322222333333333   23456899999999


Q ss_pred             CCCCC
Q 030856          125 DLVEK  129 (170)
Q Consensus       125 D~~~~  129 (170)
                      |....
T Consensus       209 D~~~~  213 (306)
T d1jwyb_         209 DLMDK  213 (306)
T ss_dssp             TSSCS
T ss_pred             ccccc
Confidence            98643

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.88  E-value=1.3e-09  Score=74.07  Aligned_cols=58  Identities=21%  Similarity=0.287  Sum_probs=36.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCC-CCccceeeeeeeEEEEEeCCeEEEEEEEecCCh
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   68 (170)
                      ....++|+++|.||||||||+|+|.+.+.. ....|..+.+.+...  .+.   .+.++||||.
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~--~~~---~~~l~DTPGi  167 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK--VGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEE--ETT---TEEEEECCCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEE--CCC---CeEEecCCCc
Confidence            346799999999999999999999987653 333444443333221  221   4789999994

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.81  E-value=5.3e-08  Score=61.44  Aligned_cols=23  Identities=26%  Similarity=0.632  Sum_probs=21.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      +||+++|++|+|||||++.+.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999998864

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=3.6e-08  Score=63.88  Aligned_cols=91  Identities=12%  Similarity=0.129  Sum_probs=53.2

Q ss_pred             EEEEEEecCChhhhhhh----hh---hhhc-----CCcEEEEEEeCCC-hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCC
Q 030856           58 VRLQLWDTAGQERFRSL----IP---SYIR-----DSSVAVVVYDVAS-RQSFLNTSKWIDEVRTERGSDVIIVLVGNKT  124 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~----~~---~~~~-----~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~  124 (170)
                      +.+.++||+|.......    ..   ...+     ..+-.++|.|++. .+........+..+      + +--++.||.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~-~~~lIlTKl  164 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV------G-LTGITLTKL  164 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS------C-CCEEEEECC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc------C-CceEEEeec
Confidence            35799999995433221    11   1122     2468888999764 33344433333222      1 224556999


Q ss_pred             CCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 030856          125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG  161 (170)
Q Consensus       125 D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~  161 (170)
                      |...    ..-.+...+...++|+..++  .|+++++
T Consensus       165 De~~----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         165 DGTA----KGGVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             TTCT----TTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CCCC----CccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            9632    23556777888899888876  5666654

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.67  E-value=2.3e-08  Score=64.96  Aligned_cols=144  Identities=15%  Similarity=0.179  Sum_probs=77.2

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCC-ccceeeeeee---------------EEEEE-eC-------------
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFL---------------SKTMY-LE-------------   54 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~~~~~~~-~~~~~~~~~~---------------~~~~~-~~-------------   54 (170)
                      ++.++.-|+++|++||||||.+-+|........ ...-.+.+.+               ...+. ..             
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~   86 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV   86 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHHHH
Confidence            345667889999999999999887764211100 0000000000               00000 00             


Q ss_pred             ----CeEEEEEEEecCChhhhhhh----hhhh---hc-----CCcEEEEEEeCCCh-hhHHhHHHHHHHHHHhcCCCCeE
Q 030856           55 ----DRTVRLQLWDTAGQERFRSL----IPSY---IR-----DSSVAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVII  117 (170)
Q Consensus        55 ----~~~~~~~i~D~~g~~~~~~~----~~~~---~~-----~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~  117 (170)
                          ...+.+.++||+|...+...    ...+   ..     ..+-.++|.|++.. +.+..+...+..+      + +-
T Consensus        87 ~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~-~~  159 (213)
T d1vmaa2          87 AHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV------N-VT  159 (213)
T ss_dssp             HHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHS------C-CC
T ss_pred             HHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhcccc------C-Cc
Confidence                01245899999994433221    1111   11     14678899998742 3333333332222      1 22


Q ss_pred             EEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 030856          118 VLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG  161 (170)
Q Consensus       118 vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~  161 (170)
                      -+++||.|...    ..-.+...+...++|+..++  +|+++++
T Consensus       160 ~lI~TKlDe~~----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         160 GIILTKLDGTA----KGGITLAIARELGIPIKFIG--VGEKAED  197 (213)
T ss_dssp             EEEEECGGGCS----CTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             eEEEecccCCC----cccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            45569999532    23556777888899888776  4666654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.60  E-value=2.3e-08  Score=65.30  Aligned_cols=24  Identities=21%  Similarity=0.188  Sum_probs=21.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      -..+++|++|||||||+|+|.++.
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchh
Confidence            467899999999999999998753

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.60  E-value=3.8e-08  Score=63.81  Aligned_cols=91  Identities=13%  Similarity=0.119  Sum_probs=54.4

Q ss_pred             EEEEEEecCChhhhhh------hhhhh--hcCCcEEEEEEeCCCh-hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030856           58 VRLQLWDTAGQERFRS------LIPSY--IRDSSVAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~------~~~~~--~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~  128 (170)
                      ..+.++||+|...+..      ....+  .-..+-+++|.+++.. +..+.....+.    ..  ++. -++.||.|.. 
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~----~~--~~~-~lI~TKlDet-  166 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQ----AS--KIG-TIIITKMDGT-  166 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHH----HC--TTE-EEEEECTTSC-
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhc----cc--Ccc-eEEEecccCC-
Confidence            4689999999643321      11111  2245778889887743 33333332222    11  222 3556999963 


Q ss_pred             CcccCHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 030856          129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG  161 (170)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~  161 (170)
                         ...-.+...+...++|+..++  .|+++++
T Consensus       167 ---~~~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         167 ---AKGGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             ---SCHHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ---CcccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence               345777888889999988887  4666654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.59  E-value=8.9e-08  Score=62.48  Aligned_cols=85  Identities=19%  Similarity=0.213  Sum_probs=60.3

Q ss_pred             hhcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHh--cCCeEEEeecC
Q 030856           78 YIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE--LNVMFIETSAK  154 (170)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~S~~  154 (170)
                      ...+.|.+++|+++.+|+ +...+.+++.....   .+++.++|+||+|+.+....  +....+...  .+.+++.+|++
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~---~~i~pvIvlnK~DL~~~~~~--~~~~~~~~~~~~~~~v~~vSa~   81 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAK   81 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTT
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---cCCCEEEEEeCcccCCHHHH--HHHHHhhcccccceeEEEeccc
Confidence            456899999999988764 34555665544433   47999999999999653321  223333332  24589999999


Q ss_pred             CCCChHHHHHHHH
Q 030856          155 AGFNIKGCSPTIR  167 (170)
Q Consensus       155 ~~~~v~~~~~~l~  167 (170)
                      ++.|++++.+++.
T Consensus        82 ~~~g~~~L~~~l~   94 (225)
T d1u0la2          82 TGMGIEELKEYLK   94 (225)
T ss_dssp             TCTTHHHHHHHHS
T ss_pred             cchhHhhHHHHhc
Confidence            9999999988774

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=1e-06  Score=57.58  Aligned_cols=93  Identities=11%  Similarity=0.073  Sum_probs=48.6

Q ss_pred             EEEEecCChhhhhhhhhhh--------hcCCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCc
Q 030856           60 LQLWDTAGQERFRSLIPSY--------IRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (170)
Q Consensus        60 ~~i~D~~g~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~  130 (170)
                      ..++++.|..........+        ....+.++.++|+.+....... ..+..++..      .=++|+||+|+..+.
T Consensus        92 ~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~------AD~ivlNK~Dl~~~~  165 (222)
T d1nija1          92 RLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAGEA  165 (222)
T ss_dssp             EEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHT------CSEEEEECTTTCSCT
T ss_pred             eeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHHh------CCcccccccccccHH
Confidence            4677777754333322221        2235888999998865332221 112222221      126778999986532


Q ss_pred             ccCHHHHHHHHHhcC--CeEEEeecCCCCChHHHH
Q 030856          131 QVSIEEGEAKSRELN--VMFIETSAKAGFNIKGCS  163 (170)
Q Consensus       131 ~~~~~~~~~~~~~~~--~~~~~~S~~~~~~v~~~~  163 (170)
                          +..++..+..+  .++++++ .....++.+|
T Consensus       166 ----~~~~~~l~~lNP~a~Ii~~~-~g~v~~~~ll  195 (222)
T d1nija1         166 ----EKLHERLARINARAPVYTVT-HGDIDLGLLF  195 (222)
T ss_dssp             ----HHHHHHHHHHCSSSCEEECC-SSCCCGGGGS
T ss_pred             ----HHHHHHHHHHhCCCeEEEee-CCccCHHHhh
Confidence                34555555554  4777654 3333455443

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.50  E-value=1.1e-07  Score=61.46  Aligned_cols=91  Identities=19%  Similarity=0.139  Sum_probs=53.2

Q ss_pred             EEEEEEecCChhhhhhh----hhhh---h-----cCCcEEEEEEeCCC-hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCC
Q 030856           58 VRLQLWDTAGQERFRSL----IPSY---I-----RDSSVAVVVYDVAS-RQSFLNTSKWIDEVRTERGSDVIIVLVGNKT  124 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~----~~~~---~-----~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~  124 (170)
                      +.+.++||+|...+...    ...+   .     ...+-.++|.|++. .+....+..++..+.      . --++.||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~------~-~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG------L-TGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHC------C-SEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhccC------C-ceEEEecc
Confidence            46899999995443221    1111   1     13577888999874 444555554444331      1 14456999


Q ss_pred             CCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 030856          125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKG  161 (170)
Q Consensus       125 D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~  161 (170)
                      |....    .-.+...+...++|+..++.  |+++++
T Consensus       162 Det~~----~G~~l~~~~~~~~Pi~~i~~--Gq~p~D  192 (207)
T d1okkd2         162 DGTAK----GGVLIPIVRTLKVPIKFVGV--GEGPDD  192 (207)
T ss_dssp             TSSCC----CTTHHHHHHHHCCCEEEEEC--SSSTTC
T ss_pred             CCCCC----ccHHHHHHHHHCCCEEEEeC--CCChHh
Confidence            96322    24456678888998777763  555543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.46  E-value=2.2e-08  Score=65.58  Aligned_cols=23  Identities=30%  Similarity=0.517  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      -..+++|++|||||||+|+|.+.
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-
T ss_pred             ceEEEECCCCccHHHHHHhhccH
Confidence            35679999999999999999975

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.44  E-value=4e-07  Score=61.46  Aligned_cols=87  Identities=10%  Similarity=0.127  Sum_probs=60.5

Q ss_pred             hhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeec
Q 030856           74 LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSA  153 (170)
Q Consensus        74 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~  153 (170)
                      .....++.+|++++|.|+.+|.+..+  ..+..+.    .+.|.++|+||+|+.+...  .+...+.....+...+.+|+
T Consensus         8 ~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~----~~Kp~IlVlNK~DLv~~~~--~~~w~~~f~~~~~~~i~isa   79 (273)
T d1puja_           8 EVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL----KNKPRIMLLNKADKADAAV--TQQWKEHFENQGIRSLSINS   79 (273)
T ss_dssp             HHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC----SSSCEEEEEECGGGSCHHH--HHHHHHHHHTTTCCEEECCT
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH----cCCCeEEEEECccCCchHH--HHHHHHHHHhcCCccceeec
Confidence            34556889999999999988765443  1222222    2679999999999865322  12223333455678999999


Q ss_pred             CCCCChHHHHHHHHh
Q 030856          154 KAGFNIKGCSPTIRR  168 (170)
Q Consensus       154 ~~~~~v~~~~~~l~~  168 (170)
                      .++.+..++.+.+.+
T Consensus        80 ~~~~~~~~~~~~~~~   94 (273)
T d1puja_          80 VNGQGLNQIVPASKE   94 (273)
T ss_dssp             TTCTTGGGHHHHHHH
T ss_pred             ccCCCccccchhhhh
Confidence            999999888776654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.38  E-value=2.3e-07  Score=60.01  Aligned_cols=84  Identities=18%  Similarity=0.111  Sum_probs=49.2

Q ss_pred             EEEEEEecCChhhhhhhh----hhh--hcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCc
Q 030856           58 VRLQLWDTAGQERFRSLI----PSY--IRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~  130 (170)
                      ..+.++||+|........    ..+  ..+.+-+++|.|.+... ..+.+..+    ....+  + --+++||.|...  
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f----~~~~~--~-~~~I~TKlDe~~--  163 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAF----DEKVG--V-TGLVLTKLDGDA--  163 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHH----HHHTC--C-CEEEEECGGGCS--
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHH----HhhCC--C-CeeEEeecCccc--
Confidence            468999999955432211    111  23578899999987542 23332222    22221  1 235569999532  


Q ss_pred             ccCHHHHHHHHHhcCCeEEEee
Q 030856          131 QVSIEEGEAKSRELNVMFIETS  152 (170)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~S  152 (170)
                        ..-.+...+...+.|+..++
T Consensus       164 --~~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         164 --RGGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             --SCHHHHHHHHHHCCCEEEEC
T ss_pred             --cchHHHHHHHHHCCCEEEEe
Confidence              23566777888888876665

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.33  E-value=1.8e-07  Score=61.21  Aligned_cols=87  Identities=20%  Similarity=0.232  Sum_probs=61.0

Q ss_pred             hhcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccC--HHHHHHHHHhcCCeEEEeecC
Q 030856           78 YIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEEGEAKSRELNVMFIETSAK  154 (170)
Q Consensus        78 ~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~S~~  154 (170)
                      ...+.|.+++|+++.+|+ .+..+.+++....   ..+++.++|+||+|+.+..+..  .+...+.....|.+++.+|+.
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~---~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~   83 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSK   83 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHH
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHH---HcCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecC
Confidence            356899999999988774 3555565544433   3578999999999997543221  111222334568899999999


Q ss_pred             CCCChHHHHHHHH
Q 030856          155 AGFNIKGCSPTIR  167 (170)
Q Consensus       155 ~~~~v~~~~~~l~  167 (170)
                      ++.|++++.+++.
T Consensus        84 ~~~gl~~L~~~l~   96 (231)
T d1t9ha2          84 DQDSLADIIPHFQ   96 (231)
T ss_dssp             HHTTCTTTGGGGT
T ss_pred             ChhHHHHHHHhhc
Confidence            9999999887664

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.19  E-value=5.6e-07  Score=56.25  Aligned_cols=27  Identities=19%  Similarity=0.278  Sum_probs=23.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .++.++|+++|++||||||+.+.|...
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            457799999999999999999998754

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.10  E-value=6.8e-07  Score=56.36  Aligned_cols=24  Identities=21%  Similarity=0.414  Sum_probs=21.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .-+|+|+|++|||||||+++|...
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999864

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.09  E-value=8.6e-07  Score=55.24  Aligned_cols=24  Identities=21%  Similarity=0.329  Sum_probs=21.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      -++|+++|+|||||||+.++|...
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999998743

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.05  E-value=1.4e-06  Score=53.16  Aligned_cols=21  Identities=19%  Similarity=0.414  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030856           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~   32 (170)
                      |+++|+||||||||.++|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            778999999999999998754

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.05  E-value=1.6e-06  Score=55.28  Aligned_cols=27  Identities=15%  Similarity=0.180  Sum_probs=22.8

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      +..++..|+++|+|||||||+.++|..
T Consensus         2 ~~~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           2 EKSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            345667889999999999999999875

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=1.2e-06  Score=54.35  Aligned_cols=21  Identities=24%  Similarity=0.434  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~   31 (170)
                      -++|+|.+|||||||++++..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999985

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.00  E-value=1.6e-06  Score=55.12  Aligned_cols=25  Identities=16%  Similarity=0.187  Sum_probs=21.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .+++|+++|+|||||||+.+.|...
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999988643

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.98  E-value=2.1e-06  Score=54.04  Aligned_cols=23  Identities=22%  Similarity=0.377  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      +||+|+|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999988653

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.97  E-value=2.9e-06  Score=53.97  Aligned_cols=27  Identities=15%  Similarity=0.304  Sum_probs=23.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      +.+-++|+++|+|||||||+...|...
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence            456799999999999999999998854

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.96  E-value=2.6e-06  Score=54.13  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=21.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      +.++|+++|+|||||||+.+.|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            568999999999999999998874

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.92  E-value=3e-06  Score=53.50  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ++|+|+|+|||||||+.+.|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999988854

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.91  E-value=3.3e-06  Score=53.24  Aligned_cols=23  Identities=17%  Similarity=0.401  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ++|+++|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998754

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.87  E-value=3.9e-06  Score=52.07  Aligned_cols=20  Identities=20%  Similarity=0.476  Sum_probs=17.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 030856           12 LVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~   31 (170)
                      +.|+|.+|||||||++++..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            36999999999999999874

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.86  E-value=4.2e-06  Score=52.62  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ++|+++|+|||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988864

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.85  E-value=4.9e-06  Score=52.41  Aligned_cols=24  Identities=17%  Similarity=0.351  Sum_probs=21.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .++|+++|+|||||||+.+.|...
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999998753

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.83  E-value=8.6e-06  Score=50.95  Aligned_cols=25  Identities=20%  Similarity=0.259  Sum_probs=21.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ..+.-|+++|.|||||||+.+++..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4566788999999999999999864

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.82  E-value=5.3e-06  Score=51.48  Aligned_cols=21  Identities=24%  Similarity=0.449  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030856           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~   32 (170)
                      |+++|++||||||+.++|...
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998754

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=7.1e-05  Score=50.25  Aligned_cols=92  Identities=17%  Similarity=0.071  Sum_probs=50.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCC-----ccceeeeeeeEEEEEeCCeEEEEEEEecCChhhhhhh-----hhhh-
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKFDNT-----YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-----IPSY-   78 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----~~~~-   78 (170)
                      .=|+++|+.++|||+|+|.+++....-.     ...|.++-...... ..+....+.+.||.|.......     ...+ 
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~~~~~~~~~~~~~i~~  111 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLGDVEKGDNQNDSWIFA  111 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBCCGGGCCCTTHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEecccccccccccchhHHHHHH
Confidence            4578899999999999999998653211     11223322211111 2334457889999995432211     1111 


Q ss_pred             --hcCCcEEEE-EEeCCChhhHHhHHH
Q 030856           79 --IRDSSVAVV-VYDVASRQSFLNTSK  102 (170)
Q Consensus        79 --~~~~d~~i~-v~d~~~~~~~~~~~~  102 (170)
                        +--++.+|+ ++...+...++.+..
T Consensus       112 l~~llSs~~i~N~~~~~~~~~l~~L~~  138 (277)
T d1f5na2         112 LAVLLSSTFVYNSIGTINQQAMDQLYY  138 (277)
T ss_dssp             HHHHHCSEEEEEEESCSSHHHHHTTHH
T ss_pred             HHHHHhCEEEEeccccCcHHHHHHHHH
Confidence              123566655 444445555555443

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=6e-06  Score=51.71  Aligned_cols=21  Identities=29%  Similarity=0.466  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~   31 (170)
                      +|+|.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999998875

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=7.1e-06  Score=50.35  Aligned_cols=22  Identities=18%  Similarity=0.410  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      +|+++|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988754

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=9.2e-06  Score=51.62  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=20.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ++.|+|+|+|||||||..+.|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998874

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.75  E-value=2.2e-05  Score=54.01  Aligned_cols=26  Identities=23%  Similarity=0.212  Sum_probs=22.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      ..+|+|.|++|||||||++++...-.
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCCEEEEeeccccchHHHHHHhhhcc
Confidence            35799999999999999999996543

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.74  E-value=1.5e-05  Score=50.74  Aligned_cols=27  Identities=19%  Similarity=0.259  Sum_probs=22.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      +.+.--|+|+|+|||||||+...|...
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            344556888999999999999998753

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.72  E-value=1.5e-05  Score=50.51  Aligned_cols=27  Identities=19%  Similarity=0.212  Sum_probs=22.9

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ....++-|+|.|++|||||||.++|..
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            345678899999999999999999874

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.70  E-value=1.7e-05  Score=49.42  Aligned_cols=25  Identities=16%  Similarity=0.296  Sum_probs=21.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      .+-+.|.++|.+||||||+.+.|..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4457899999999999999888764

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.69  E-value=1.3e-05  Score=51.34  Aligned_cols=22  Identities=27%  Similarity=0.336  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~   31 (170)
                      .-|+++|.|||||||+.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999999884

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.69  E-value=1e-05  Score=50.16  Aligned_cols=23  Identities=30%  Similarity=0.343  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .+|+++|++||||||+.+.+...
T Consensus         2 p~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999998887643

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.67  E-value=1.6e-05  Score=52.30  Aligned_cols=25  Identities=12%  Similarity=0.126  Sum_probs=21.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      =+++|+|+.|+|||||++.+.+-..
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCC
Confidence            3689999999999999999887543

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.67  E-value=1.2e-05  Score=49.64  Aligned_cols=22  Identities=27%  Similarity=0.534  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      +|+++|++||||||+.+.|...
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999887643

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.64  E-value=1.4e-05  Score=50.04  Aligned_cols=21  Identities=29%  Similarity=0.219  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~   31 (170)
                      -|+|.|++||||||+++.|..
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378889999999999998864

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.63  E-value=2e-05  Score=50.48  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .++++|+.|+|||||++.+.+-..
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~~   52 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYLK   52 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcccc
Confidence            478999999999999999987544

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.62  E-value=1.9e-05  Score=51.19  Aligned_cols=26  Identities=19%  Similarity=0.332  Sum_probs=22.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ++++.|+|-||+||||||....|...
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHH
Confidence            46788999999999999999988753

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.62  E-value=1.6e-05  Score=50.25  Aligned_cols=21  Identities=19%  Similarity=0.586  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030856           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~   32 (170)
                      |+|+||+|||||||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999764

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.61  E-value=2.5e-05  Score=51.42  Aligned_cols=24  Identities=21%  Similarity=0.232  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      =.++++|+.|+|||||++.+.+-.
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            468999999999999999988643

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.61  E-value=1.7e-05  Score=49.87  Aligned_cols=21  Identities=24%  Similarity=0.471  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030856           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~   32 (170)
                      |+++||+|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678999999999999999754

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.60  E-value=1.8e-05  Score=49.12  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      -|++.|++||||||+.+.|...
T Consensus         6 iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4788999999999999988754

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=2.3e-05  Score=51.15  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      -++++|+.|+|||||++.+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            4799999999999999988764

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.60  E-value=2.3e-05  Score=51.18  Aligned_cols=23  Identities=13%  Similarity=0.241  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            47999999999999999777643

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=2e-05  Score=48.77  Aligned_cols=22  Identities=18%  Similarity=0.366  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      =++++|++||||||+.+.|...
T Consensus         8 iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3567899999999999998753

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.58  E-value=0.0001  Score=45.01  Aligned_cols=27  Identities=19%  Similarity=0.215  Sum_probs=22.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      +..-|++-|+-|+|||||++.+...-.
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            345688899999999999999886543

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.57  E-value=2.6e-05  Score=51.70  Aligned_cols=24  Identities=17%  Similarity=0.236  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      =.++|+|+.|+|||||++.+.+-.
T Consensus        42 e~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CEEEEECCCCChHHHHHHHHhccc
Confidence            368999999999999999988643

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=2.8e-05  Score=51.50  Aligned_cols=24  Identities=13%  Similarity=0.159  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .++|+|+.|+|||||++.+.+-..
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcccC
Confidence            689999999999999999886543

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=2.4e-05  Score=49.15  Aligned_cols=21  Identities=33%  Similarity=0.618  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030856           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~   32 (170)
                      |+++||+|+||+||+++|...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999854

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.55  E-value=3.2e-05  Score=51.47  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=21.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .+.-|++.|+||+|||||..++...
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3456899999999999999998764

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=1.3e-05  Score=50.71  Aligned_cols=24  Identities=17%  Similarity=0.173  Sum_probs=20.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      +...|.++|.|||||||+.+.|..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456788999999999999998864

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.53  E-value=2.7e-05  Score=49.42  Aligned_cols=21  Identities=19%  Similarity=0.596  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030856           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~   32 (170)
                      |+|+||+|||||||+++|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998753

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.52  E-value=3.4e-05  Score=50.55  Aligned_cols=24  Identities=29%  Similarity=0.283  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      -++++|+.|+|||||++.+.+-..
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~~   57 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLEE   57 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC
Confidence            479999999999999999887543

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=3.3e-05  Score=51.99  Aligned_cols=24  Identities=25%  Similarity=0.317  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .++|+|+.|+|||||++.+.+-..
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhCCCc
Confidence            589999999999999999987543

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.49  E-value=3.9e-05  Score=50.28  Aligned_cols=23  Identities=22%  Similarity=0.216  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      -++++|+.|+|||||++.+.+-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            35799999999999999998754

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=3.1e-05  Score=49.73  Aligned_cols=22  Identities=18%  Similarity=0.333  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      =|+++||+|||||||+++|...
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3678999999999999999864

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.49  E-value=3.8e-05  Score=48.73  Aligned_cols=29  Identities=17%  Similarity=0.336  Sum_probs=24.7

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            4 VSALAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         4 ~~~~~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .+..+++-|+|-|..||||||+++.|...
T Consensus         4 ~~~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           4 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            34567789999999999999999998754

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.48  E-value=4e-05  Score=50.28  Aligned_cols=24  Identities=21%  Similarity=0.263  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .++++|+.|+|||||++.+.+-..
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~~   54 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLEE   54 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            579999999999999999887544

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=3.1e-05  Score=50.83  Aligned_cols=23  Identities=17%  Similarity=0.245  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      -++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            47999999999999999988754

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.46  E-value=4.4e-05  Score=50.12  Aligned_cols=25  Identities=16%  Similarity=0.129  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKFD   35 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~~   35 (170)
                      -++++|+.|+|||||++.+.+-..+
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~~p   54 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLIKP   54 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4689999999999999999876543

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.46  E-value=3.3e-05  Score=49.02  Aligned_cols=23  Identities=13%  Similarity=0.258  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      --|+++|+|||||||+..+|...
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            34788999999999999998753

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.45  E-value=3.6e-05  Score=47.80  Aligned_cols=21  Identities=14%  Similarity=0.341  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~   31 (170)
                      .|+++|++||||||+.+.+..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            378899999999999998864

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.44  E-value=4.7e-05  Score=50.06  Aligned_cols=24  Identities=17%  Similarity=0.228  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      -++++|+.|+|||||++.+.+-..
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            468999999999999999987643

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.44  E-value=2.8e-05  Score=50.62  Aligned_cols=24  Identities=25%  Similarity=0.264  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      -++++|+.|+|||||++.+.+-..
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~~   51 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFHV   51 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Confidence            379999999999999999987543

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.44  E-value=5.1e-05  Score=46.97  Aligned_cols=22  Identities=23%  Similarity=0.384  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      =|++.|++||||||+.+.|...
T Consensus         5 iI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3677799999999999998864

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=2.8e-05  Score=50.92  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      -++++|+.|+|||||++.+.+-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3789999999999999999873

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.42  E-value=4.8e-05  Score=49.81  Aligned_cols=24  Identities=21%  Similarity=0.387  Sum_probs=20.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ...+++.||||+||||+++.+...
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999998753

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.41  E-value=3.4e-05  Score=51.16  Aligned_cols=24  Identities=21%  Similarity=0.239  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      =+++|+|+.|+|||||++.+.+-.
T Consensus        45 e~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHhcC
Confidence            378999999999999999877643

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=6e-05  Score=48.45  Aligned_cols=23  Identities=17%  Similarity=0.384  Sum_probs=20.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ++-|+|.|++|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            56799999999999999998753

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.38  E-value=4.4e-05  Score=49.92  Aligned_cols=23  Identities=17%  Similarity=0.353  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .++++.||||+||||+.+.+...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhc
Confidence            46899999999999999998754

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=7.5e-05  Score=47.30  Aligned_cols=26  Identities=31%  Similarity=0.494  Sum_probs=22.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ..+-+++++|+||+|||++++.+...
T Consensus        41 ~~k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          41 RTKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCCCeEEEecCCcccHHHHHHHHHH
Confidence            34568999999999999999887754

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.37  E-value=5.3e-05  Score=50.33  Aligned_cols=23  Identities=13%  Similarity=0.377  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47999999999999999998654

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.37  E-value=4.8e-05  Score=47.72  Aligned_cols=22  Identities=23%  Similarity=0.391  Sum_probs=17.9

Q ss_pred             eeEE-EEcCCCCCHHHHHHHHhc
Q 030856           10 YKLV-FLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~-i~G~~~~GKStll~~l~~   31 (170)
                      +||. |.|.+||||||+++.|..
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            3554 569999999999998864

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.36  E-value=6.6e-05  Score=49.78  Aligned_cols=23  Identities=17%  Similarity=0.218  Sum_probs=20.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 030856           12 LVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      ++++|+.|+|||||++.+.+-..
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEECCCCCcHHHHHHHHHCCCc
Confidence            68999999999999999997643

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.34  E-value=8.7e-05  Score=48.95  Aligned_cols=25  Identities=16%  Similarity=0.315  Sum_probs=21.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      +...|++.|+||+|||++++++...
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhc
Confidence            3467999999999999999998753

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.27  E-value=0.00012  Score=46.12  Aligned_cols=25  Identities=12%  Similarity=0.109  Sum_probs=21.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .++-|+|.|.+||||||+.+.|...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            4678999999999999999988654

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=0.00011  Score=48.91  Aligned_cols=26  Identities=27%  Similarity=0.475  Sum_probs=22.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ..+-+++++|+||+|||++++.+...
T Consensus        37 ~~k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          37 RRKNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CccCCcEEECCCCCcHHHHHHHHHHH
Confidence            34568999999999999999987754

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.26  E-value=4.4e-05  Score=50.11  Aligned_cols=24  Identities=21%  Similarity=0.288  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      .++++|+.|+|||||++.+.+-..
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~~   56 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLDV   56 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHHcCcC
Confidence            579999999999999999987543

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.24  E-value=0.00012  Score=48.40  Aligned_cols=25  Identities=20%  Similarity=0.246  Sum_probs=21.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ..-.+++.|++|+|||++++.+...
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999988754

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.21  E-value=0.00015  Score=47.64  Aligned_cols=24  Identities=17%  Similarity=0.227  Sum_probs=21.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ...+++.||||+||||+++.+...
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999998864

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.20  E-value=0.00012  Score=47.63  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .++++.|++|+||||+++.+...
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999988753

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.14  E-value=0.00012  Score=49.95  Aligned_cols=24  Identities=29%  Similarity=0.448  Sum_probs=20.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .-.++++||||+|||.|.+++...
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhhc
Confidence            457899999999999999998753

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.08  E-value=0.00014  Score=48.12  Aligned_cols=22  Identities=32%  Similarity=0.280  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~   31 (170)
                      -.|++.|++|+|||||++++..
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Confidence            3578899999999999998874

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.07  E-value=0.00028  Score=47.42  Aligned_cols=26  Identities=19%  Similarity=0.235  Sum_probs=21.5

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHh
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~   30 (170)
                      ...+++=|+|.|++|||||||...+.
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHH
Confidence            34567899999999999999987654

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.06  E-value=0.00013  Score=48.49  Aligned_cols=21  Identities=19%  Similarity=0.235  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030856           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~   32 (170)
                      +.+.|+||+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            345699999999999998854

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.0002  Score=48.70  Aligned_cols=26  Identities=19%  Similarity=0.312  Sum_probs=21.7

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHh
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~   30 (170)
                      ....++-|+|.|++||||||+.+.|.
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            34567899999999999999987765

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.04  E-value=0.00027  Score=45.29  Aligned_cols=26  Identities=12%  Similarity=0.172  Sum_probs=22.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ..+..-|.+.|.||||||||.+.|..
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567799999999999999998874

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.00019  Score=46.09  Aligned_cols=22  Identities=14%  Similarity=0.214  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      =|+|.|||||||||+...|...
T Consensus         5 iI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4677799999999999988754

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.03  E-value=0.0002  Score=45.58  Aligned_cols=22  Identities=14%  Similarity=0.306  Sum_probs=18.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~   31 (170)
                      +-|+|-|..||||||+++.|..
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999988764

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.01  E-value=0.00024  Score=47.14  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=21.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      +..+++.|+||+|||++++++...
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHH
Confidence            456999999999999999998864

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.00  E-value=0.00023  Score=46.88  Aligned_cols=23  Identities=22%  Similarity=0.365  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      -.+++.|+||+|||+|++++.+.
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            46999999999999999999853

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.95  E-value=0.00025  Score=46.53  Aligned_cols=23  Identities=17%  Similarity=0.314  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .++++.|++|+||||++..+...
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999999999988754

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.95  E-value=0.00024  Score=46.17  Aligned_cols=23  Identities=30%  Similarity=0.482  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .++++.|++|+||||+++.+...
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHH
Confidence            35899999999999999988753

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.00029  Score=46.62  Aligned_cols=24  Identities=17%  Similarity=0.279  Sum_probs=20.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      +-.+++.|+||+|||++++++...
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHH
Confidence            346899999999999999998853

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.92  E-value=0.00024  Score=45.97  Aligned_cols=22  Identities=36%  Similarity=0.591  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ++++.|++|+||||++..+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            5899999999999999998864

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.92  E-value=0.00026  Score=45.73  Aligned_cols=23  Identities=17%  Similarity=0.343  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .++++.|++|+||||+++.+...
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHHH
Confidence            46899999999999999887643

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.80  E-value=0.00033  Score=50.02  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=20.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      +-||+++||+|||||-|.++|..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            44899999999999999999864

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.72  E-value=0.00047  Score=45.85  Aligned_cols=25  Identities=20%  Similarity=0.323  Sum_probs=21.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      ...|++.|++|+|||+|++++.+..
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHh
Confidence            4569999999999999999998653

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.72  E-value=0.0003  Score=49.36  Aligned_cols=25  Identities=32%  Similarity=0.518  Sum_probs=20.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ..+-++++||+||||||++++.|..
T Consensus        41 ~~k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          41 RTKNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             SSCCCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCCCeEECCCCCCHHHHHHHHHH
Confidence            3455789999999999999876554

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.00046  Score=44.08  Aligned_cols=20  Identities=25%  Similarity=0.290  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 030856           12 LVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~   31 (170)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999988764

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.67  E-value=0.00073  Score=43.01  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~   31 (170)
                      +-|+|.|..||||||+.+.+..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999998764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.64  E-value=0.00071  Score=43.19  Aligned_cols=23  Identities=22%  Similarity=0.392  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      +-|+|+|..||||||+.+.|...
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHC
Confidence            45889999999999999987644

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.62  E-value=0.00027  Score=48.58  Aligned_cols=21  Identities=19%  Similarity=0.496  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~   31 (170)
                      +++++|+||+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            689999999999999998863

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00064  Score=43.50  Aligned_cols=20  Identities=20%  Similarity=0.375  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 030856           12 LVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~   31 (170)
                      |+|-|..||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77789999999998877653

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.55  E-value=0.00088  Score=46.54  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=20.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ++-.+++.||||+|||++...+..
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHH
Confidence            445789999999999999998874

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.00047  Score=44.79  Aligned_cols=22  Identities=18%  Similarity=0.323  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      .|+|-|+.||||||+++.|...
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5788899999999999987754

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.54  E-value=0.00094  Score=41.44  Aligned_cols=26  Identities=19%  Similarity=0.335  Sum_probs=21.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      ..-|++.|++|+||||+.-.+..+..
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            35689999999999999999886643

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.53  E-value=0.0011  Score=44.23  Aligned_cols=24  Identities=21%  Similarity=0.379  Sum_probs=20.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ..-|+|.|++|+|||||...+...
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            346789999999999999988743

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00087  Score=42.55  Aligned_cols=23  Identities=22%  Similarity=0.250  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      -+.|.|+||+|||+|+..+....
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            46789999999999998887543

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.47  E-value=0.0011  Score=41.20  Aligned_cols=26  Identities=12%  Similarity=0.300  Sum_probs=21.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      ..-|+|.|++|+||||+.-.+..+..
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHcCC
Confidence            35689999999999999999886543

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.44  E-value=0.00087  Score=43.01  Aligned_cols=21  Identities=19%  Similarity=0.358  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030856           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~   32 (170)
                      +.+.|++|+|||.|++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999998864

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.44  E-value=0.0013  Score=46.36  Aligned_cols=22  Identities=14%  Similarity=0.270  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 030856           12 LVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~~   33 (170)
                      |++.|+.||||||.+..++...
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhhh
Confidence            7899999999999999988753

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.00015  Score=45.84  Aligned_cols=18  Identities=22%  Similarity=0.577  Sum_probs=16.4

Q ss_pred             EEEcCCCCCHHHHHHHHh
Q 030856           13 VFLGDQSVGKTSIITRFM   30 (170)
Q Consensus        13 ~i~G~~~~GKStll~~l~   30 (170)
                      +|+|+.|+||||+++++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            578999999999999976

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.35  E-value=0.00051  Score=46.10  Aligned_cols=23  Identities=13%  Similarity=0.257  Sum_probs=16.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~   30 (170)
                      ++.=|+|.|.+||||||+.++|.
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHH
Confidence            34459999999999999998765

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0011  Score=43.01  Aligned_cols=22  Identities=23%  Similarity=0.446  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      -|+|=|..||||||+++.|...
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5788899999999999998854

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.0021  Score=43.73  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~   31 (170)
                      -.++++||+|+|||.|.+.+..
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCcchhHHHHHHHHh
Confidence            3689999999999999998774

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.22  E-value=0.00079  Score=45.37  Aligned_cols=20  Identities=25%  Similarity=0.453  Sum_probs=17.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 030856           10 YKLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~   30 (170)
                      ++ +++|+.|+|||++++++.
T Consensus        26 ln-vlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          26 VT-AIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EE-EEECCTTTCSTHHHHHHH
T ss_pred             eE-EEECCCCCcHHHHHHHHH
Confidence            44 789999999999999873

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.21  E-value=0.0017  Score=39.99  Aligned_cols=26  Identities=15%  Similarity=0.323  Sum_probs=21.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~~~   34 (170)
                      ..-|+|.|++|+||||+.-.+.....
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            45689999999999999988886643

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.21  E-value=0.0015  Score=42.30  Aligned_cols=22  Identities=14%  Similarity=0.276  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      -+.|.|+||+|||+|.-.+...
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4678899999999999888754

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.11  E-value=0.002  Score=44.74  Aligned_cols=24  Identities=21%  Similarity=0.401  Sum_probs=20.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      +.-+++++||+|||||-|.++|..
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHh
Confidence            456799999999999999998864

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=96.09  E-value=0.0011  Score=45.35  Aligned_cols=27  Identities=19%  Similarity=0.363  Sum_probs=23.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCC
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      +..++|.|=|.-|+||||+++.|...-
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~~l   29 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLHHF   29 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHTT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHHH
Confidence            456889999999999999999988653

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.06  E-value=0.0018  Score=42.12  Aligned_cols=23  Identities=17%  Similarity=0.182  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      -+.|.|+||+|||+|.-.+....
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            46788999999999988776543

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.05  E-value=0.0016  Score=45.59  Aligned_cols=22  Identities=14%  Similarity=0.487  Sum_probs=18.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHh
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~   30 (170)
                      +.++ +|+|+.|+|||++++++.
T Consensus        25 ~~l~-~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          25 SNFT-SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             CSEE-EEECSTTSSHHHHHHHHH
T ss_pred             CCEE-EEECCCCCCHHHHHHHHH
Confidence            3454 688999999999999974

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=96.05  E-value=0.0024  Score=43.76  Aligned_cols=25  Identities=12%  Similarity=0.129  Sum_probs=22.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      +-++|.|=|.-|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            4589999999999999999998864

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.04  E-value=0.0021  Score=43.80  Aligned_cols=21  Identities=19%  Similarity=0.365  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030856           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~   32 (170)
                      +++.|+||+|||.|.+++...
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            455799999999999998864

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.03  E-value=0.0019  Score=41.37  Aligned_cols=22  Identities=18%  Similarity=0.200  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      =|+|-|..||||||+++.|...
T Consensus         5 ~I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           5 LILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            3788899999999999887643

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.02  E-value=0.002  Score=41.76  Aligned_cols=23  Identities=26%  Similarity=0.495  Sum_probs=19.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      --++|.|+||+|||+|+..+...
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            34688899999999999887754

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.92  E-value=0.0025  Score=43.56  Aligned_cols=24  Identities=17%  Similarity=0.213  Sum_probs=20.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      -++|.|=|.-|+||||+++.|...
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~~   27 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVAL   27 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC-
T ss_pred             ceEEEEECCcCCCHHHHHHHHHHH
Confidence            367999999999999999998743

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.82  E-value=0.0026  Score=41.06  Aligned_cols=23  Identities=26%  Similarity=0.247  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~~   33 (170)
                      -+.|.|++|+|||+|...+...-
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            46788999999999998887543

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.82  E-value=0.0024  Score=40.35  Aligned_cols=25  Identities=32%  Similarity=0.377  Sum_probs=21.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      .++--+++.|++++|||.|++++..
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEEEECCCCccHHHHHHHHHH
Confidence            4556788999999999999988774

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.81  E-value=0.0031  Score=40.10  Aligned_cols=20  Identities=15%  Similarity=0.248  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 030856           12 LVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~   31 (170)
                      +++.|++|+||||++..+..
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            89999999999999997665

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.80  E-value=0.003  Score=40.97  Aligned_cols=21  Identities=19%  Similarity=0.237  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~   31 (170)
                      -|+|.|..||||||..+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998864

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.70  E-value=0.0035  Score=40.71  Aligned_cols=20  Identities=40%  Similarity=0.552  Sum_probs=17.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 030856           12 LVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~   31 (170)
                      +++.|++|+|||++++.+..
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78899999999999988764

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.68  E-value=0.0029  Score=44.62  Aligned_cols=24  Identities=21%  Similarity=0.459  Sum_probs=20.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ...+++|+|.+|+|||+++..++.
T Consensus        49 ~~~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          49 EPRHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GGGCEEEEECTTSSHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCcHHHHHHHHHH
Confidence            346799999999999999887664

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.004  Score=40.38  Aligned_cols=22  Identities=18%  Similarity=0.212  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      -+.|.|++|+|||+|.-.+...
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4688899999999999888753

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.53  E-value=0.0043  Score=41.06  Aligned_cols=20  Identities=10%  Similarity=0.348  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 030856           12 LVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~   31 (170)
                      ++|.|+||+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            57889999999999877763

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.46  E-value=0.0044  Score=39.67  Aligned_cols=21  Identities=24%  Similarity=0.384  Sum_probs=17.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 030856           10 YKLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~   30 (170)
                      --+.|.|++|+|||+|...+.
T Consensus        27 ~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          27 RSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHH
Confidence            346788999999999986654

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=95.43  E-value=0.0031  Score=42.18  Aligned_cols=17  Identities=24%  Similarity=0.432  Sum_probs=13.8

Q ss_pred             EEEEcCCCCCHHHH-HHH
Q 030856           12 LVFLGDQSVGKTSI-ITR   28 (170)
Q Consensus        12 i~i~G~~~~GKStl-l~~   28 (170)
                      ++|.|++|+||||. +++
T Consensus        17 ~lI~g~aGTGKTt~l~~r   34 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNK   34 (306)
T ss_dssp             EEECCCTTSCHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHH
Confidence            67889999999975 443

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=95.22  E-value=0.0081  Score=39.74  Aligned_cols=25  Identities=20%  Similarity=0.292  Sum_probs=21.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      .++--+.+.|++++|||+|++.+..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHH
Confidence            4566778899999999999998875

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.22  E-value=0.0064  Score=40.61  Aligned_cols=21  Identities=14%  Similarity=0.289  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~   31 (170)
                      |++|+|++|+|||+|+..+..
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHH
Confidence            789999999999999988775

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=95.14  E-value=0.0048  Score=41.57  Aligned_cols=15  Identities=27%  Similarity=0.609  Sum_probs=13.0

Q ss_pred             EEEEcCCCCCHHHHH
Q 030856           12 LVFLGDQSVGKTSII   26 (170)
Q Consensus        12 i~i~G~~~~GKStll   26 (170)
                      ++|.|.+|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            788899999999754

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.12  E-value=0.0097  Score=40.33  Aligned_cols=21  Identities=33%  Similarity=0.605  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030856           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~   31 (170)
                      .++++|++|+|||.+.+.+..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            678889999999999887664

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.04  E-value=0.0069  Score=39.86  Aligned_cols=19  Identities=11%  Similarity=0.214  Sum_probs=16.3

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 030856           12 LVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~   30 (170)
                      .+|.|++|+|||+|+-.+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            4689999999999987765

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.79  E-value=0.0095  Score=41.15  Aligned_cols=19  Identities=26%  Similarity=0.468  Sum_probs=15.4

Q ss_pred             eEEEEcCCCCCHHHHHHHH
Q 030856           11 KLVFLGDQSVGKTSIITRF   29 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l   29 (170)
                      -.+|.|+||+|||+++.++
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            4677899999999987543

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=94.67  E-value=0.068  Score=32.76  Aligned_cols=102  Identities=9%  Similarity=0.051  Sum_probs=57.3

Q ss_pred             CCceeEEEEcC-CCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh--------------
Q 030856            7 LAKYKLVFLGD-QSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF--------------   71 (170)
Q Consensus         7 ~~~~~i~i~G~-~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------------   71 (170)
                      .+.+||+|+|. .++|-| |+..|..+......                 ....+++.|.+.....              
T Consensus        22 k~~~kV~I~GA~G~Ig~~-l~~~La~g~v~g~~-----------------~~i~L~L~di~~~~~~l~g~~mdl~d~a~~   83 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISNH-LLFKLASGEVFGQD-----------------QPIALKLLGSERSFQALEGVAMELEDSLYP   83 (175)
T ss_dssp             CCCEEEEEETTTSHHHHH-HHHHHHHTTTTCTT-----------------CCEEEEEECCGGGHHHHHHHHHHHHTTTCT
T ss_pred             CCCcEEEEECCCcHHHHH-HHHHHHcCcccCCC-----------------ceEEEEEecCccccchhcchhhhhcccccc
Confidence            46789999996 677765 44455554432111                 1134455555442210              


Q ss_pred             -------hhhhhhhhcCCcEEEEEEeCCChh---hHHh-------HHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 030856           72 -------RSLIPSYIRDSSVAVVVYDVASRQ---SFLN-------TSKWIDEVRTERGSDVIIVLVGNKTDL  126 (170)
Q Consensus        72 -------~~~~~~~~~~~d~~i~v~d~~~~~---~~~~-------~~~~~~~~~~~~~~~~~~vvv~nK~D~  126 (170)
                             .......+.++|++|++-......   ..+.       .+...+.+.++..++..++++.|-.|.
T Consensus        84 ~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~  155 (175)
T d7mdha1          84 LLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT  155 (175)
T ss_dssp             TEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             cccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHH
Confidence                   011233477899999987765322   1222       233444556665567778888887773

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.63  E-value=0.015  Score=33.40  Aligned_cols=26  Identities=8%  Similarity=0.203  Sum_probs=22.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ..-+.|.+.|..|+|||+|.++|...
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~   29 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLST   29 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHH
Confidence            45588999999999999999998754

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.44  E-value=0.055  Score=32.39  Aligned_cols=51  Identities=16%  Similarity=0.136  Sum_probs=31.3

Q ss_pred             hhhhcCCcEEEEEEeCCChh---hHHh-------HHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 030856           76 PSYIRDSSVAVVVYDVASRQ---SFLN-------TSKWIDEVRTERGSDVIIVLVGNKTDL  126 (170)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~~---~~~~-------~~~~~~~~~~~~~~~~~~vvv~nK~D~  126 (170)
                      ...+.++|+++++-.....+   ..+.       ++.+...+.++..++.-++++.|-.|.
T Consensus        75 ~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv  135 (154)
T d1y7ta1          75 KVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANT  135 (154)
T ss_dssp             HHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             hhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHH
Confidence            44578999999988765321   2222       234444555555456677777887774

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.87  E-value=0.047  Score=32.70  Aligned_cols=101  Identities=13%  Similarity=0.106  Sum_probs=53.0

Q ss_pred             CceeEEEEcC-CCCCHHHHHHHHhcCCCCCCccceeeeeeeEEEEEeCCeEEEEEEEecCChhhh---------------
Q 030856            8 AKYKLVFLGD-QSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------------   71 (170)
Q Consensus         8 ~~~~i~i~G~-~~~GKStll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------------   71 (170)
                      .++||+|+|. .++|.+... .|..+......                 ....+.++|.......               
T Consensus         2 ~p~KV~IiGA~G~VG~~la~-~l~~~~~~~~~-----------------~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~   63 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLY-SIGNGSVFGKD-----------------QPIILVLLDITPMMGVLDGVLMELQDCALPL   63 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHH-HHHTTTTTCTT-----------------CCEEEEEECCGGGHHHHHHHHHHHHHTCCTT
T ss_pred             CceEEEEECCCCHHHHHHHH-HHHHHHhcCCC-----------------CccEEEEecCccchhhhhhhhhhhccccccc
Confidence            5689999995 789987655 44443322110                 1123445554432110               


Q ss_pred             ------hhhhhhhhcCCcEEEEEEeCCChh------hHHh----HHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 030856           72 ------RSLIPSYIRDSSVAVVVYDVASRQ------SFLN----TSKWIDEVRTERGSDVIIVLVGNKTDL  126 (170)
Q Consensus        72 ------~~~~~~~~~~~d~~i~v~d~~~~~------~~~~----~~~~~~~~~~~~~~~~~~vvv~nK~D~  126 (170)
                            .......+.++|+++++-.....+      -+..    ++.....+.++.+...-++++.|-+|.
T Consensus        64 ~~~~~~~~~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~  134 (154)
T d5mdha1          64 LKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANT  134 (154)
T ss_dssp             EEEEEEESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             ccccccCcccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHH
Confidence                  011233467889988876543321      1222    234444455555444556667787774

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.77  E-value=0.023  Score=37.61  Aligned_cols=22  Identities=32%  Similarity=0.610  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030856           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~~~   32 (170)
                      |++++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7899999999999998887643

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=93.70  E-value=0.023  Score=37.27  Aligned_cols=88  Identities=13%  Similarity=0.133  Sum_probs=51.3

Q ss_pred             EEEEEEecCChhhhhhh-hhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCe-EEEEEeCCCCCCCcccCH
Q 030856           58 VRLQLWDTAGQERFRSL-IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVI-IVLVGNKTDLVEKRQVSI  134 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~-~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~-~vvv~nK~D~~~~~~~~~  134 (170)
                      +.+.+.|+|+....... .......+|.++++... +..++.........+..... .+.. .-++.|+.+....    .
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~----~  190 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANE----Y  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCC----H
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCc----c
Confidence            46889999874433222 22223468888887775 45566655555555544332 2333 3467799876432    3


Q ss_pred             HHHHHHHHhcCCeEEE
Q 030856          135 EEGEAKSRELNVMFIE  150 (170)
Q Consensus       135 ~~~~~~~~~~~~~~~~  150 (170)
                      +..+++++..+.+++.
T Consensus       191 ~~~~~~~~~~~~~~~~  206 (269)
T d1cp2a_         191 ELLDAFAKELGSQLIH  206 (269)
T ss_dssp             HHHHHHHHHHTCCEEE
T ss_pred             chhhhhHhhcCCeEEE
Confidence            5566677777776554

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=93.43  E-value=0.03  Score=32.57  Aligned_cols=23  Identities=9%  Similarity=-0.026  Sum_probs=17.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      .-..++.++.|+|||.++-.+..
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHH
Confidence            34456789999999998765543

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=93.30  E-value=0.035  Score=36.66  Aligned_cols=28  Identities=39%  Similarity=0.541  Sum_probs=19.3

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHH
Q 030856            1 MAPVSALAKYKLVFLGDQSVGKTSIITRF   29 (170)
Q Consensus         1 m~~~~~~~~~~i~i~G~~~~GKStll~~l   29 (170)
                      |...++++++ |++.|..|+||||+.-.+
T Consensus         1 ~~~~~~~p~~-i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1           1 MQFLQNIPPY-LFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             CGGGSSCCSE-EEEECSTTSSHHHHHHHH
T ss_pred             CCcCCCCCeE-EEEECCCcChHHHHHHHH
Confidence            4445556554 457899999999975543

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=93.25  E-value=0.03  Score=36.82  Aligned_cols=20  Identities=25%  Similarity=0.439  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 030856           12 LVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~   31 (170)
                      +.+.|++|+|||+|+-.+..
T Consensus        57 tei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            57889999999999876663

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.03  E-value=0.033  Score=36.22  Aligned_cols=23  Identities=17%  Similarity=0.333  Sum_probs=19.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030856            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ...|+|.|++|+||+.+.+.+..
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHHHH
Confidence            45689999999999999888764

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.64  E-value=0.039  Score=34.05  Aligned_cols=22  Identities=18%  Similarity=0.318  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 030856           12 LVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~~~   33 (170)
                      ++|+|...||||.+..++....
T Consensus         2 iLVtGGarSGKS~~AE~l~~~~   23 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGDA   23 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCSC
T ss_pred             EEEECCCCccHHHHHHHHHhcC
Confidence            6899999999999999987543

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.54  E-value=0.33  Score=28.49  Aligned_cols=50  Identities=16%  Similarity=0.322  Sum_probs=30.7

Q ss_pred             hhhhcCCcEEEEEEeCCCh------hhHHh----HHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 030856           76 PSYIRDSSVAVVVYDVASR------QSFLN----TSKWIDEVRTERGSDVIIVLVGNKTDL  126 (170)
Q Consensus        76 ~~~~~~~d~~i~v~d~~~~------~~~~~----~~~~~~~~~~~~~~~~~~vvv~nK~D~  126 (170)
                      ...++++|+++++.-....      +-+..    ++.....+.++ +++.-++++.|-.|.
T Consensus        63 ~~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvD~  122 (144)
T d1mlda1          63 PDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIISNPVNS  122 (144)
T ss_dssp             HHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCHHH
T ss_pred             HHHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCchhh
Confidence            4457889999998664321      11222    24444555555 467888888888873

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.45  E-value=0.046  Score=35.23  Aligned_cols=19  Identities=21%  Similarity=0.382  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 030856           12 LVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~   30 (170)
                      ++|.|+..+||||+++.+.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            5788999999999999865

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=92.38  E-value=0.046  Score=32.22  Aligned_cols=17  Identities=35%  Similarity=0.563  Sum_probs=13.6

Q ss_pred             EEEcCCCCCHHH-HHHHH
Q 030856           13 VFLGDQSVGKTS-IITRF   29 (170)
Q Consensus        13 ~i~G~~~~GKSt-ll~~l   29 (170)
                      +++||-.||||| |++++
T Consensus         6 ~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEECSTTSCHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHH
Confidence            578999999999 55554

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.31  E-value=0.66  Score=29.00  Aligned_cols=76  Identities=17%  Similarity=0.113  Sum_probs=48.7

Q ss_pred             EEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEE-EEEeCCCCCCCcccCHHH
Q 030856           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV-LVGNKTDLVEKRQVSIEE  136 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v-vv~nK~D~~~~~~~~~~~  136 (170)
                      +.+.++|+++...  ......+..+|.++++.... ..++....+.+..+.+   .+.|++ +|.|+.+... .....+.
T Consensus       112 ~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~---~~~~~~giv~N~~~~~~-~~~~~~~  184 (237)
T d1g3qa_         112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK---AGLAILGFVLNRYGRSD-RDIPPEA  184 (237)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH---TTCEEEEEEEEEETSCT-TCCCHHH
T ss_pred             CCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhh---hhhhhhhhhhccccccc-chhhhHH
Confidence            5689999987543  33444567899999998864 5566666665555544   356654 7889998643 3344444


Q ss_pred             HHHH
Q 030856          137 GEAK  140 (170)
Q Consensus       137 ~~~~  140 (170)
                      .+.+
T Consensus       185 ~~~~  188 (237)
T d1g3qa_         185 AEDV  188 (237)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            4443

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.17  E-value=0.052  Score=34.75  Aligned_cols=19  Identities=16%  Similarity=0.415  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 030856           12 LVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~   30 (170)
                      ++|.|+..+||||+++.+.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            6788999999999999755

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.68  E-value=0.045  Score=36.39  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=18.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030856           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~   31 (170)
                      =|++++|.+|+|||+|+..+..
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHHH
Confidence            3789999999999999876664

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.50  E-value=0.064  Score=35.11  Aligned_cols=18  Identities=28%  Similarity=0.660  Sum_probs=13.5

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q 030856           12 LVFLGDQSVGKTSIITRF   29 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l   29 (170)
                      |++.|..|+||||+.-.|
T Consensus        23 ii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          23 IMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            455599999999974443

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.44  E-value=0.068  Score=35.31  Aligned_cols=88  Identities=11%  Similarity=0.073  Sum_probs=48.6

Q ss_pred             EEEEEEecCChhhhhhhhhhh-hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeE-EEEEeCCCCCCCcccCH
Q 030856           58 VRLQLWDTAGQERFRSLIPSY-IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVII-VLVGNKTDLVEKRQVSI  134 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~~~~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~-vvv~nK~D~~~~~~~~~  134 (170)
                      +.+.++|+|+........... ...++.++++... +..++..+...+..+.... ..+.++ .+|.|+.+...    ..
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~-~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~----~~  193 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR----ED  193 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT----HH
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccch-hHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchh----hH
Confidence            467888988754322222222 2356766666553 4555665555555554432 234443 47789887422    23


Q ss_pred             HHHHHHHHhcCCeEEE
Q 030856          135 EEGEAKSRELNVMFIE  150 (170)
Q Consensus       135 ~~~~~~~~~~~~~~~~  150 (170)
                      +..+++++.++.+++.
T Consensus       194 ~~~~~~~~~~g~~vl~  209 (289)
T d2afhe1         194 ELIIALANKLGTQMIH  209 (289)
T ss_dssp             HHHHHHHHHHTSCEEE
T ss_pred             HHHHHHHHHcCCeEEE
Confidence            4456677777776654

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=90.65  E-value=0.059  Score=36.17  Aligned_cols=14  Identities=43%  Similarity=0.724  Sum_probs=12.7

Q ss_pred             EEEcCCCCCHHHHH
Q 030856           13 VFLGDQSVGKTSII   26 (170)
Q Consensus        13 ~i~G~~~~GKStll   26 (170)
                      ++.|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            68899999999975

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=90.64  E-value=0.089  Score=32.84  Aligned_cols=63  Identities=10%  Similarity=-0.005  Sum_probs=32.8

Q ss_pred             cEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEE
Q 030856           83 SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIE  150 (170)
Q Consensus        83 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  150 (170)
                      +.+++|.+.... ...........+...  .....-+|.|+.|...  ....+..+.+.+..+++++-
T Consensus       139 ~~v~~V~~~~~~-~~~~~~~~~~~~~~~--~~~~~gvv~N~~~~~~--~~~~~~~~~l~~~~gi~vlG  201 (224)
T d1byia_         139 LPVILVVGVKLG-CINHAMLTAQVIQHA--GLTLAGWVANDVTPPG--KRHAEYMTTLTRMIPAPLLG  201 (224)
T ss_dssp             CCEEEEEECSTT-HHHHHHHHHHHHHHT--TCCEEEEEEECCSSCC--TTHHHHHHHHHHHSSSCEEE
T ss_pred             ceeeEEEeeccc-hhHHHHHHHHHHhcc--CCccEEEEEeCcCCCc--hHHHHHHHHHHHHhCCCEEE
Confidence            445555554433 222222232333332  2345677889988532  33345566677777887763

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.33  E-value=0.26  Score=29.06  Aligned_cols=27  Identities=15%  Similarity=0.208  Sum_probs=19.4

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhc
Q 030856            5 SALAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         5 ~~~~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ......||+|+|..++|.+....-...
T Consensus         2 ~~~~~~KI~IiGaG~vG~~~a~~l~~~   28 (148)
T d1ldna1           2 KNNGGARVVVIGAGFVGASYVFALMNQ   28 (148)
T ss_dssp             TTTTSCEEEEECCSHHHHHHHHHHHHH
T ss_pred             CCCCCCeEEEECcCHHHHHHHHHHHhc
Confidence            345677999999988897766554443

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.29  E-value=0.11  Score=32.37  Aligned_cols=24  Identities=4%  Similarity=0.012  Sum_probs=20.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~   31 (170)
                      ....+++.|++|+|||++...+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999987774

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=90.21  E-value=0.077  Score=35.05  Aligned_cols=23  Identities=26%  Similarity=0.540  Sum_probs=18.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      =|++|+|.+|+|||+|+..+...
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHHT
T ss_pred             ceEeeccCCCCChHHHHHHHHhh
Confidence            36889999999999998765433

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=90.11  E-value=0.065  Score=36.08  Aligned_cols=15  Identities=40%  Similarity=0.649  Sum_probs=13.0

Q ss_pred             EEEEcCCCCCHHHHH
Q 030856           12 LVFLGDQSVGKTSII   26 (170)
Q Consensus        12 i~i~G~~~~GKStll   26 (170)
                      -++.|.+|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            378899999999974

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=89.80  E-value=0.11  Score=34.13  Aligned_cols=20  Identities=25%  Similarity=0.312  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 030856           12 LVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        12 i~i~G~~~~GKStll~~l~~   31 (170)
                      +-+.|++++|||+|+-.+..
T Consensus        60 tei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHH
Confidence            57889999999999877664

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.80  E-value=0.078  Score=35.72  Aligned_cols=14  Identities=43%  Similarity=0.724  Sum_probs=12.9

Q ss_pred             EEEcCCCCCHHHHH
Q 030856           13 VFLGDQSVGKTSII   26 (170)
Q Consensus        13 ~i~G~~~~GKStll   26 (170)
                      ++.|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (323)
T d1ii2a1          18 VFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEECCTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            68999999999986

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.72  E-value=0.12  Score=33.97  Aligned_cols=20  Identities=25%  Similarity=0.396  Sum_probs=16.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 030856           11 KLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l~   30 (170)
                      -+.+.|++++|||+|+-.+.
T Consensus        62 i~e~~G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAV   81 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHH
T ss_pred             eEEEecCCCcHHHHHHHHHH
Confidence            35788999999999976655

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.34  E-value=0.44  Score=27.99  Aligned_cols=48  Identities=10%  Similarity=0.127  Sum_probs=28.7

Q ss_pred             hhcCCcEEEEEEeCCCh---hhHHhH-------HHHHHHHHHhcCCCCeEEEEEeCCCC
Q 030856           78 YIRDSSVAVVVYDVASR---QSFLNT-------SKWIDEVRTERGSDVIIVLVGNKTDL  126 (170)
Q Consensus        78 ~~~~~d~~i~v~d~~~~---~~~~~~-------~~~~~~~~~~~~~~~~~vvv~nK~D~  126 (170)
                      .+.++|+++++--....   ++.+.+       +...+.+.++. ++..++++.|-.|.
T Consensus        66 ~~~~aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~-p~aivivvtNPvD~  123 (145)
T d2cmda1          66 ALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGIITNPVNT  123 (145)
T ss_dssp             HHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHH
T ss_pred             ccCCCCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhC-CCcEEEEccCCchH
Confidence            36789999998765421   112222       33334444444 66778888888874

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=88.30  E-value=0.44  Score=28.00  Aligned_cols=24  Identities=25%  Similarity=0.412  Sum_probs=17.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030856            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      ++.||+|+|...+|-+ +...+..+
T Consensus         4 ~~~KI~IIGaG~VG~~-~A~~l~~~   27 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSS-YAFAMAQQ   27 (146)
T ss_dssp             TBCEEEEECCSHHHHH-HHHHHHHH
T ss_pred             CCCEEEEECCCHHHHH-HHHHHHhc
Confidence            4679999999888976 44444443

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=87.86  E-value=1.6  Score=26.16  Aligned_cols=56  Identities=18%  Similarity=0.106  Sum_probs=38.6

Q ss_pred             CChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeec
Q 030856           92 ASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSA  153 (170)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~  153 (170)
                      +|+.+++........+..  ..+.|+++++.......    ..+++.+++...+++++.+..
T Consensus         3 sd~~~l~~~v~~~~~~l~--~AkrPvIi~G~g~~~~~----a~~~l~~lae~~~~Pv~tt~~   58 (175)
T d1zpda1           3 SDEASLNAAVDETLKFIA--NRDKVAVLVGSKLRAAG----AEEAAVKFTDALGGAVATMAA   58 (175)
T ss_dssp             CCHHHHHHHHHHHHHHHT--TCSCEEEEECTTTTTTT----CHHHHHHHHHHHCCCEEEEGG
T ss_pred             CChHHHHHHHHHHHHHHH--cCCCEEEEECcCccccc----hHHHHHHHHHhhceeEEeccc
Confidence            456666665443333322  35799999998887532    468889999999999886543

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=87.79  E-value=0.09  Score=30.13  Aligned_cols=17  Identities=24%  Similarity=0.083  Sum_probs=13.5

Q ss_pred             ceeEEEEcCCCCCHHHH
Q 030856            9 KYKLVFLGDQSVGKTSI   25 (170)
Q Consensus         9 ~~~i~i~G~~~~GKStl   25 (170)
                      .-++++.+++|+|||..
T Consensus         7 ~~~~il~~~tGsGKT~~   23 (140)
T d1yksa1           7 GMTTVLDFHPGAGKTRR   23 (140)
T ss_dssp             TCEEEECCCTTSSTTTT
T ss_pred             CCcEEEEcCCCCChhHH
Confidence            45678889999999943

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.55  E-value=0.21  Score=30.68  Aligned_cols=15  Identities=27%  Similarity=0.339  Sum_probs=13.0

Q ss_pred             eEEEEcCCCCCHHHH
Q 030856           11 KLVFLGDQSVGKTSI   25 (170)
Q Consensus        11 ~i~i~G~~~~GKStl   25 (170)
                      +++++++.|+|||..
T Consensus        25 n~lv~~pTGsGKT~i   39 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLI   39 (200)
T ss_dssp             CEEEECCTTSCHHHH
T ss_pred             CeEEEeCCCCcHHHH
Confidence            578999999999964

>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Formyltetrahydrofolate synthetase
species: Moorella thermoacetica [TaxId: 1525]

Probab=86.46  E-value=0.32  Score=34.92  Aligned_cols=66  Identities=14%  Similarity=-0.009  Sum_probs=42.7

Q ss_pred             HhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHh
Q 030856           98 LNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRR  168 (170)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~  168 (170)
                      .++...++.+++   -++|++|.+|+..-..+.+  .+..+++|...++.+...=+.-|+|-.+|-+.+++
T Consensus       355 ~NL~rHIeNi~~---fGlpvVVAIN~F~tDTd~E--i~~i~~~~~~~g~~~a~~wa~GG~Ga~dLA~~Vv~  420 (549)
T d1eg7a_         355 ANLEKHIENIGK---FGVPAVVAINAFPTDTEAE--LNLLYELCAKAGAEVALSWAKGGEGGLELARKVLQ  420 (549)
T ss_dssp             HHHHHHHHHHHT---TTCCEEEEEECCTTCCHHH--HHHHHHHTTTSEEEEECCTTTGGGGGHHHHHHHHH
T ss_pred             HHHHHHHHhhhh---cCCCeEEEeccCCccchhH--HHHHHHHHhhcCcceeeecccCccchHHHHHHHHH
Confidence            334444444433   4899999999997543333  36677788888876544445566677777776655

>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: ROO-like flavoprotein TM0755, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.45  E-value=1.9  Score=24.91  Aligned_cols=89  Identities=9%  Similarity=0.009  Sum_probs=53.3

Q ss_pred             hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEee-cC-
Q 030856           77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETS-AK-  154 (170)
Q Consensus        77 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S-~~-  154 (170)
                      .-+..+|++++....-....+.....++..+......+.++.++++.-.- .   -......+.....|+.++..- .. 
T Consensus        53 ~~l~~~d~iiigspt~~~~~~~~~~~~l~~~~~~~~~~k~~~~fgs~g~~-~---~a~~~~~~~l~~~G~~~v~~~~~~~  128 (148)
T d1vmea1          53 KDIPDSEALIFGVSTYEAEIHPLMRFTLLEIIDKANYEKPVLVFGVHGWA-P---SAERTAGELLKETKFRILSFTEIKG  128 (148)
T ss_dssp             HHSTTCSEEEEEECEETTEECHHHHHHHHHHHHHCCCCCEEEEEEECCCC-C---CC-CCHHHHHHTSSCEEEEEEEECS
T ss_pred             hhHHHCCEeEEEecccCCccCchHHHHHHHHhhcccCCCEEEEEEcCCCc-c---chHHHHHHHHHHcCCcEEeeEEEeC
Confidence            34678999999876555444455666666666655578999999885432 1   123445566777787554332 22 


Q ss_pred             ---CCCChHHHHHHHHhh
Q 030856          155 ---AGFNIKGCSPTIRRL  169 (170)
Q Consensus       155 ---~~~~v~~~~~~l~~~  169 (170)
                         ....+++..+.+.+.
T Consensus       129 ~~~de~~~~e~~~~~~k~  146 (148)
T d1vmea1         129 SNMDERKIEEAISLLKKE  146 (148)
T ss_dssp             TTCCTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence               122366666666654

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.06  E-value=0.27  Score=30.86  Aligned_cols=64  Identities=13%  Similarity=0.003  Sum_probs=38.2

Q ss_pred             EEEEEEecCChhhhhhhhhhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 030856           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL  126 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~  126 (170)
                      +.+.++|+|+...  ......+..+|.++++.... ..++......+..+.+..  ..++-+|.|+.+.
T Consensus       110 ~D~viiD~~~~~~--~~~~~~l~~ad~v~~v~~~~-~~~~~~~~~~~~~~~~~~--~~~~~iv~N~~~~  173 (232)
T d1hyqa_         110 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERLG--TKVLGVVVNRITT  173 (232)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHHT--CEEEEEEEEEECT
T ss_pred             cceeeeccccccc--chhHHHhhhhheeeeecccc-ccchhhhhhhhhhhhhcc--ccccccccccccc
Confidence            3478899987543  23334466799999998864 444555444444333332  1234567899864

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=84.89  E-value=0.26  Score=31.59  Aligned_cols=25  Identities=24%  Similarity=0.276  Sum_probs=19.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHh
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l~   30 (170)
                      .......++.|..|||||-..-+..
T Consensus        73 ~~~~~~~LL~GdvGsGKT~V~~~a~   97 (233)
T d2eyqa3          73 QPLAMDRLVCGDVGFGKTEVAMRAA   97 (233)
T ss_dssp             SSSCCEEEEECCCCTTTHHHHHHHH
T ss_pred             ccCccCeEEEcCCCCCcHHHHHHHH
Confidence            4456788999999999998855444

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.06  E-value=0.38  Score=27.80  Aligned_cols=42  Identities=10%  Similarity=0.169  Sum_probs=25.3

Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030856           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        79 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~nK~D~~  127 (170)
                      +...|+  +.+|  .-+-|+.+..+...+..   .+.++++.|-..|-.
T Consensus        71 ~~~~d~--I~ID--EaQFf~dl~~~~~~~~~---~~~~Viv~GLd~Df~  112 (133)
T d1xbta1          71 ALGVAV--IGID--EGQFFPDIVEFCEAMAN---AGKTVIVAALDGTFQ  112 (133)
T ss_dssp             HHTCSE--EEES--SGGGCTTHHHHHHHHHH---TTCEEEEECCSBCTT
T ss_pred             hcccce--EEee--hhHHHHHHHHHHHHHHh---cCCcEEEEEeccccc
Confidence            456664  4444  22445555555555443   478899998888854

>d1knxa1 c.98.2.1 (A:1-132) HPr kinase/phoshatase HprK N-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: MurF and HprK N-domain-like
superfamily: HprK N-terminal domain-like
family: HPr kinase/phoshatase HprK N-terminal domain
domain: HPr kinase/phoshatase HprK N-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=84.03  E-value=0.69  Score=26.67  Aligned_cols=56  Identities=5%  Similarity=-0.124  Sum_probs=40.9

Q ss_pred             HHHhcCCCCeEEEEEeCCCCCCCcccCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHhh
Q 030856          107 VRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKGCSPTIRRL  169 (170)
Q Consensus       107 ~~~~~~~~~~~vvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~v~~~~~~l~~~  169 (170)
                      +.+....+.|+++|....+       .+++..+.|++++++++.++..+..=+..+-.+|.+.
T Consensus        76 l~~l~~~~~PciIvt~~~~-------~p~~l~~~a~~~~vPll~T~~~ts~li~~l~~yL~~~  131 (132)
T d1knxa1          76 LHNLLKLNPPAIILTKSFT-------DPTVLLQVNQTYQVPILKTDFFSTELSFTVETYINEQ  131 (132)
T ss_dssp             HHHHHTTCCSCEEEETTTC-------CCHHHHHHGGGTCCCEEEESSCGGGGTTTHHHHHHHH
T ss_pred             HHHHhCcCCCEEEEECCCC-------CCHHHHHHHHHcCCcEEEeCccHHHHHHHHHHHHHhh
Confidence            4444456889888865443       2466788999999999998888777777777776654

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.85  E-value=0.12  Score=32.01  Aligned_cols=17  Identities=24%  Similarity=0.286  Sum_probs=14.4

Q ss_pred             eeEEEEcCCCCCHHHHH
Q 030856           10 YKLVFLGDQSVGKTSII   26 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll   26 (170)
                      -++++.+++|+|||...
T Consensus        41 ~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          41 KNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             SCEEEECSSHHHHHHHH
T ss_pred             CCEEEEcCCCCchhHHH
Confidence            46899999999999753

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.54  E-value=4  Score=26.30  Aligned_cols=19  Identities=16%  Similarity=0.433  Sum_probs=15.1

Q ss_pred             eEEEEcCCCCCHHHHHHHH
Q 030856           11 KLVFLGDQSVGKTSIITRF   29 (170)
Q Consensus        11 ~i~i~G~~~~GKStll~~l   29 (170)
                      +|++-|..|+||||+.-.|
T Consensus         4 ~IaisgKGGVGKTT~a~NL   22 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNL   22 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5677899999999975443

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.99  E-value=0.45  Score=29.81  Aligned_cols=19  Identities=21%  Similarity=0.508  Sum_probs=14.8

Q ss_pred             EEEE-cCCCCCHHHHHHHHh
Q 030856           12 LVFL-GDQSVGKTSIITRFM   30 (170)
Q Consensus        12 i~i~-G~~~~GKStll~~l~   30 (170)
                      |++. +..|+||||+.-.|.
T Consensus         5 Iav~~~kGGvGKTtia~nLA   24 (237)
T d1g3qa_           5 ISIVSGKGGTGKTTVTANLS   24 (237)
T ss_dssp             EEEECSSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCcHHHHHHHHH
Confidence            6677 778999999966554

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=82.97  E-value=2.3  Score=24.47  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=16.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030856           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~i~G~~~~GKStll~~l~~~   32 (170)
                      +||+++|..++|.| +...+..+
T Consensus         1 mKI~IIGaG~VG~~-la~~l~~~   22 (142)
T d1guza1           1 MKITVIGAGNVGAT-TAFRLAEK   22 (142)
T ss_dssp             CEEEEECCSHHHHH-HHHHHHHT
T ss_pred             CEEEEECcCHHHHH-HHHHHHhC
Confidence            58999998888887 44555543

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=81.78  E-value=0.52  Score=27.54  Aligned_cols=23  Identities=22%  Similarity=0.268  Sum_probs=16.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh
Q 030856            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus         7 ~~~~~i~i~G~~~~GKStll~~l~   30 (170)
                      .-.+. +++|+-.|||||-+-+..
T Consensus         6 ~G~l~-lI~GpMfSGKTteLi~~~   28 (141)
T d1xx6a1           6 HGWVE-VIVGPMYSGKSEELIRRI   28 (141)
T ss_dssp             CCEEE-EEECSTTSSHHHHHHHHH
T ss_pred             ceeEE-EEEeccccHHHHHHHHHH
Confidence            34565 568999999999765554

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=80.93  E-value=0.34  Score=31.65  Aligned_cols=24  Identities=21%  Similarity=0.227  Sum_probs=18.4

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHH
Q 030856            6 ALAKYKLVFLGDQSVGKTSIITRF   29 (170)
Q Consensus         6 ~~~~~~i~i~G~~~~GKStll~~l   29 (170)
                      ...+++-++.|+.|||||-..-..
T Consensus       101 ~~~~m~rLL~GdvGSGKT~Va~~a  124 (264)
T d1gm5a3         101 SEKPMNRLLQGDVGSGKTVVAQLA  124 (264)
T ss_dssp             SSSCCCCEEECCSSSSHHHHHHHH
T ss_pred             ccCcceeeeeccccccccHHHHHH
Confidence            345677799999999999875443