Citrus Sinensis ID: 030859

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Protein Sequence
MKTISLVEQVMGISICSTKYPVKNSPMRFLPEVPDESGGKQIVPSPANGSKNAYPLLKRIKKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVIIFY
Secondary Structure (PSIPRED)
ccccccccEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHcccEEEEcccccccEEEEccccccccEEEEEEEEEEEccccccEEEEEEEccEEEEEEccEEEEEcccccEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccHccEEEEcccccccccccccccccccccccccccccccccccccccccccHccHHHHHHHHHHcHHHHccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHEHEEccccccEEEEEEEEccEEEEEccccEEEEcccccEEEEEEEEEEEc
Coil and Loop (DISEMBL)
MKTISLVEQVMGISicstkypvknspmrflpevpdesggkqivpspangsknayPLLKRIKKADRFAtgvrehvrlgpkITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYlsttagpiagllfistekiafcsersikipspngesarihYKVIIFY
Flexible Loop (DISEMBL)
MKTISLVEQVMGisicstkypvknsPMRFLPEVPDesggkqivpspangsknayPLLKRIKKADrfatgvrehvrlgpkiteivkgklslgaRIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSErsikipspngesarihYKVIIFY
Low Complexity Region (SEG)
MKTISLVEQVMGISICSTKYPVKNSPMRFLPEVPDESGGKQIVPSPANGSKNAYPLLKRIKKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVIIFY
Disordered region (IsUnstruct)
*****LVEQVMGISICSTKYPV*******************************YPLLKRIKKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKI******SARIHYKVIIF*
Disordered Region (DISOPRED)
******V**VMGISICSTK*********************************************RFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVIIFY
Disordered Region (DISEMBL)
MKTISLVEQVMGISICSTKYPVKNSPMRFLPEVPDESGGKQIVPSPANGSKNAYPLLKRIKKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVIIFY
Disordered Region (DISPRO)
*****LVEQVMGISICSTKYPV*******************************YPLLKRIKKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVIIFY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKTISLVEQVMGISICSTKYPVKNSPMRFLPEVPDESGGKQIVPSPANGSKNAYPLLKRIKKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVIIFY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	170	2.2.26 [Sep-21-2011]
Q9FTA0	222	GEM-like protein 4 OS=Ara	yes	no	0.864	0.662	0.575	3e-40
Q9FMW4	219	Putative GEM-like protein	no	no	0.852	0.662	0.563	1e-38
Q9FMW6	218	GEM-like protein 6 OS=Ara	no	no	0.835	0.651	0.546	3e-37
Q9FMW5	210	GEM-like protein 7 OS=Ara	no	no	0.741	0.6	0.557	4e-36
Q9LYV6	272	GEM-like protein 5 OS=Ara	no	no	0.635	0.397	0.361	9e-20
Q9M122	233	GEM-like protein 2 OS=Ara	no	no	0.647	0.472	0.369	1e-18
Q9SE96	259	GEM-like protein 1 OS=Ara	no	no	0.629	0.413	0.372	3e-17
Q8S8F8	299	GLABRA2 expression modula	no	no	0.623	0.354	0.339	7e-16
Q9M063	239	Putative GEM-like protein	no	no	0.394	0.280	0.373	1e-10

>sp|Q9FTA0|GEML4_ARATH GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1

 Score =  164 bits (415), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/153 (57%), Positives = 113/153 (73%), Gaps = 6/153 (3%)

Query: 19  KYPV-KNSPMRFLPEVPDESGGKQIVPSPANGSK--NAYPLLKRIKKADRFATGVREHVR 75
           +YP  K +P+ +LP+    S  K  VP+ +  S+  N   +LKR KK D F  GVR+  +
Sbjct: 12  RYPAAKATPVGYLPD--PASFNKFRVPASSKKSEQSNVKSILKR-KKTDGFTNGVRDQSK 68

Query: 76  LGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLL 135
           + PK+TE VK KLSLGARI+QVGG+ K+FK+LF V+EGE+L K  QCYLSTTAGPIAGLL
Sbjct: 69  IRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLL 128

Query: 136 FISTEKIAFCSERSIKIPSPNGESARIHYKVII 168
           FIS++K+AFCSERSIK+ SP G+  R+HYKV I
Sbjct: 129 FISSKKMAFCSERSIKVDSPQGDIIRVHYKVSI 161

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW4|GEML8_ARATH Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1

 Score =  158 bits (400), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 84/149 (56%), Positives = 106/149 (71%), Gaps = 4/149 (2%)

Query: 22  VKNSPMRFLPEVPDESGGKQIVPSPANGS--KNAYPLLKRIKKADRFATGVREHVRLGPK 79
           VK SP  +LP+    S  K  +P+ +  S        + R KK D F  GVR+  +LGPK
Sbjct: 16  VKTSPAGYLPD--PASINKLQIPTSSKFSFLTGKGKSMLRKKKNDSFTNGVRDQDKLGPK 73

Query: 80  ITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFIST 139
           +TE VK KLSLGARI+Q+GG+ K++K+LF V++ E+L K  QCYLSTTAGPIAGLLFIS+
Sbjct: 74  LTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISS 133

Query: 140 EKIAFCSERSIKIPSPNGESARIHYKVII 168
           +KIAFCSERSIK+ SP GE  R+HYKV I
Sbjct: 134 KKIAFCSERSIKVASPQGELNRVHYKVSI 162

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW6|GEML6_ARATH GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2

 Score =  154 bits (388), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 83/152 (54%), Positives = 103/152 (67%), Gaps = 10/152 (6%)

Query: 22  VKNSPMRFLPEVPDESGGKQIVPSPANGSKNAYPLLK-----RIKKADRFATGVREHVRL 76
            K   M +LP+ P      QI  S    SK +Y   K     R KK D F  G R+  +L
Sbjct: 16  AKTDTMSYLPD-PASINNHQIPTS----SKVSYLTGKGKSMLRKKKTDSFTNGARDQDKL 70

Query: 77  GPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLF 136
           GPK+TE VK KLSLGA+I+Q+GG+ K++K+LF V + E+L K  QCYLSTTAGPIAGLLF
Sbjct: 71  GPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAYQCYLSTTAGPIAGLLF 130

Query: 137 ISTEKIAFCSERSIKIPSPNGESARIHYKVII 168
           IS++KIAFCSERSIK+ SP G  +R+HYKV I
Sbjct: 131 ISSKKIAFCSERSIKVASPQGVLSRVHYKVSI 162

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW5|GEML7_ARATH GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1

 Score =  150 bits (379), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/131 (55%), Positives = 95/131 (72%), Gaps = 5/131 (3%)

Query: 43  VPSPANGSKNAYPLLKRI-----KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQV 97
           +P PA+ +K   P   ++     KK D F  G R+  +LGPK+TE VK KLSLGA+I+Q+
Sbjct: 24  LPDPASINKLQIPTSSKVSMLQKKKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQM 83

Query: 98  GGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNG 157
           GG+ K++K+LF V + E+L K  QCYLSTT G IAGLLFIS++KIAFCSERSIK+ SP G
Sbjct: 84  GGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQG 143

Query: 158 ESARIHYKVII 168
           +  R+HYKV I
Sbjct: 144 DLTRVHYKVSI 154

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYV6|GEML5_ARATH GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1

 Score = 96.3 bits (238), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 70/108 (64%)

Query: 61  KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTC 120
           +KA+  A  +  +++ GP ++E   GK++L A+ I  GG   +F+++F     E L KT 
Sbjct: 102 RKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGTEPNETLKKTF 161

Query: 121 QCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVII 168
            CYLSTT GP+AG +++S  ++AFCS+R +   +P+G+ +  +Y+V++
Sbjct: 162 ACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVV 209

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M122|GEML2_ARATH GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 73/111 (65%), Gaps = 1/111 (0%)

Query: 61  KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTC 120
           +KA+    G+++H++  P I++    +LS G ++I  GG  +VF++ F V   E+LL + 
Sbjct: 65  RKAEALVGGLKDHLKFSPSISDAAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSF 124

Query: 121 QCYLSTTAGPIAGLLFISTEKIAFCSERSIKIP-SPNGESARIHYKVIIFY 170
            CY+STT+GP+ G+++IS  +IAFCS+ +I++P S  G     +YKV++ +
Sbjct: 125 VCYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVAAYYKVVMEW 175

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SE96|GEML1_ARATH GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1

 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 67/110 (60%), Gaps = 3/110 (2%)

Query: 60  IKKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKT 119
            KKA+  A    +H++ GP + +    +++ G +I+  GG  KVFK+ F+    E+LLKT
Sbjct: 96  TKKAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKT 155

Query: 120 CQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARI-HYKVII 168
             CYLST+AGP+ G++++ST K+AF S+  +      GE     +YKV++
Sbjct: 156 YACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSY--KEGEQTLWSYYKVVL 203

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8F8|GEM_ARATH GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1

 Score = 83.2 bits (204), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 63/109 (57%), Gaps = 3/109 (2%)

Query: 61  KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTC 120
           KK +  A    +H+R  P   +   G+++   ++   GG  K+F++ F     E+LL + 
Sbjct: 134 KKTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSF 193

Query: 121 QCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARI-HYKVII 168
            CYLST+AGP+ G+L+IS+ K+A+CS+  +     NG+     +YKV+I
Sbjct: 194 ACYLSTSAGPVMGVLYISSAKLAYCSDNPLSY--KNGDQTEWSYYKVVI 240

Involved in the spatial control of cell division, patterning and differentiation of Arabidopsis root epidermal cells. Could be part of a complex that negatively modulates GLABRA2 and CAPRICE expression via the maintenance of a repressor histone H3 epigenetics status of the GL2 and CPC promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M063|GEML3_ARATH Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 46/67 (68%)

Query: 86  GKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFC 145
           G+++   +++  GG  K+F++ F     E+L  +  CYLST+AGP+ G+L++ST K+A+C
Sbjct: 112 GRIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTAKLAYC 171

Query: 146 SERSIKI 152
           S+ S+ +
Sbjct: 172 SDTSLVV 178

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
255544121	237	conserved hypothetical protein [Ricinus	0.935	0.670	0.601	8e-50
224081322	234	predicted protein [Populus trichocarpa]	0.917	0.666	0.617	2e-49
224093965	234	predicted protein [Populus trichocarpa]	0.917	0.666	0.588	6e-48
224106033	221	predicted protein [Populus trichocarpa]	0.929	0.714	0.595	3e-47
224083864	221	predicted protein [Populus trichocarpa]	0.929	0.714	0.595	6e-47
225463675	218	PREDICTED: GEM-like protein 4 [Vitis vin	0.923	0.720	0.598	4e-46
224148499	224	predicted protein [Populus trichocarpa]	0.882	0.669	0.581	7e-46
449523782	221	PREDICTED: GEM-like protein 4-like [Cucu	0.970	0.746	0.577	1e-45
449464298	230	PREDICTED: GEM-like protein 4-like [Cucu	0.970	0.717	0.577	2e-45
224081318	228	predicted protein [Populus trichocarpa]	0.905	0.675	0.6	9e-45

>gi|255544121|ref|XP_002513123.1| conserved hypothetical protein [Ricinus communis] gi|223548134|gb|EEF49626.1| conserved hypothetical protein [Ricinus communis]

 Score =  201 bits (511), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 104/173 (60%), Positives = 129/173 (74%), Gaps = 14/173 (8%)

Query: 5   SLVEQVMGISICSTKYPVKNSPMRFLPEVPDESGGKQIVPSPANGS-----KNAYPLLKR 59
           S+ EQV+GI I S    V+ +P  FL     E+  +  VP+PAN S          +LKR
Sbjct: 4   SIQEQVIGIPITSAASQVQKTPRLFL-----ENTSQSYVPTPANKSLAVKQDKIDSVLKR 58

Query: 60  I----KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGER 115
           +    KKAD+FA G+REHV+LG KITE +KGKLSLGARI+QVGG+ K++++LFNV EGER
Sbjct: 59  MNKLGKKADKFAHGIREHVKLGTKITETLKGKLSLGARILQVGGVKKIYRQLFNVKEGER 118

Query: 116 LLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVII 168
           LLK CQCYLSTTAGPIAGLLFIS++K+AFCSERSIK+ SP G+  RIHYKV+I
Sbjct: 119 LLKACQCYLSTTAGPIAGLLFISSDKLAFCSERSIKLSSPEGKMVRIHYKVVI 171

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081322|ref|XP_002306370.1| predicted protein [Populus trichocarpa] gi|222855819|gb|EEE93366.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 105/170 (61%), Positives = 126/170 (74%), Gaps = 14/170 (8%)

Query: 8   EQVMGISICSTKYPVKNSPMRFLPEVPDESGGKQIVPSPANGS-----KNAYPLLKRI-- 60
           +QV+GI I S  Y V+  P   L     E+  ++ +P+PAN S          LLKR+  
Sbjct: 6   KQVIGIPIRSAAYSVEKMPRLLL-----ENAEQRYIPTPANKSLTCKQNKTDSLLKRMNK 60

Query: 61  --KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLK 118
             KKAD+FA G+REHV+LG +ITE +KGKLSLGARIIQVGG+ KVF++LF V+EGERLLK
Sbjct: 61  LGKKADKFAHGIREHVKLGTRITETLKGKLSLGARIIQVGGVKKVFRQLFGVSEGERLLK 120

Query: 119 TCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVII 168
            CQCYLSTTAGPIAGLLF STEKIAFCSERSIK+ SP G+  RIHYKV+I
Sbjct: 121 VCQCYLSTTAGPIAGLLFTSTEKIAFCSERSIKLSSPEGKLTRIHYKVVI 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093965|ref|XP_002310054.1| predicted protein [Populus trichocarpa] gi|118489337|gb|ABK96473.1| unknown [Populus trichocarpa x Populus deltoides] gi|222852957|gb|EEE90504.1| predicted protein [Populus trichocarpa]

 Score =  195 bits (495), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 100/170 (58%), Positives = 127/170 (74%), Gaps = 14/170 (8%)

Query: 8   EQVMGISICSTKYPVKNSPMRFLPEVPDESGGKQIVPSPANGS-----KNAYPLLKRI-- 60
           +QV+GI I +  Y V+  P   L     E+  ++ +PSPAN +          +LKR+  
Sbjct: 6   KQVIGIPIRTASYAVEKMPRLLL-----ENAEQRYIPSPANKALACKQNKIDSMLKRMNK 60

Query: 61  --KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLK 118
             KKAD+FA G+REH+RLG KITE + GKLSLGARI+QVGG+ KVF++LF+V+EGERLL+
Sbjct: 61  LGKKADKFAHGIREHMRLGTKITETLVGKLSLGARILQVGGVKKVFRQLFSVSEGERLLR 120

Query: 119 TCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVII 168
            CQCYLSTTAGPIAGLLFISTEK+AFCSERSIK+ SP G+  RIHYKV++
Sbjct: 121 VCQCYLSTTAGPIAGLLFISTEKLAFCSERSIKLSSPEGKLVRIHYKVVV 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106033|ref|XP_002333733.1| predicted protein [Populus trichocarpa] gi|222838390|gb|EEE76755.1| predicted protein [Populus trichocarpa]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 100/168 (59%), Positives = 123/168 (73%), Gaps = 10/168 (5%)

Query: 5   SLVEQVMGISICSTKYPVKNSPMRFLPEVPDESGGKQIVPSPANGSKNAYPLLKRI---- 60
           +  +Q +GI I S  Y  + SP+R+LP  PD        P        A  +LK +    
Sbjct: 4   TFQDQALGIPINSAAYTARRSPLRYLPG-PDGQ-----YPQAYFKQCKADSMLKMMNKLG 57

Query: 61  KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTC 120
           KKAD FA GVREHVRLGPKI+E VKGKLSLGA+I+QVGG+ K+FK+LF V+E E+LLK  
Sbjct: 58  KKADNFANGVREHVRLGPKISETVKGKLSLGAKILQVGGVEKIFKQLFVVSEDEKLLKAS 117

Query: 121 QCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVII 168
           QCYLSTTAGPIAGLLF+STEK+AFCSERSIKI SP+G+S R+HYKV++
Sbjct: 118 QCYLSTTAGPIAGLLFVSTEKVAFCSERSIKISSPSGKSVRVHYKVLV 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083864|ref|XP_002307149.1| predicted protein [Populus trichocarpa] gi|222856598|gb|EEE94145.1| predicted protein [Populus trichocarpa]

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 100/168 (59%), Positives = 122/168 (72%), Gaps = 10/168 (5%)

Query: 5   SLVEQVMGISICSTKYPVKNSPMRFLPEVPDESGGKQIVPSPANGSKNAYPLLKRI---- 60
           +  +Q +GI I S  Y  + SP+R+LP  PD        P        A  +LK +    
Sbjct: 4   TFQDQALGIPINSAAYTARRSPLRYLPG-PDGQ-----YPQAYFKQCKADSMLKMMNKLG 57

Query: 61  KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTC 120
           KKAD FA GVREHVRLGPKI+E VKGKLSLGA+I+QVGG+ K+FK+LF V+E E+LLK  
Sbjct: 58  KKADNFANGVREHVRLGPKISETVKGKLSLGAKILQVGGVEKIFKQLFVVSEDEKLLKAS 117

Query: 121 QCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVII 168
           QCYLSTTAGPIAGLLFISTEK+AFCSERSIK  SP+G+S R+HYKV++
Sbjct: 118 QCYLSTTAGPIAGLLFISTEKVAFCSERSIKFSSPSGKSVRVHYKVLV 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463675|ref|XP_002275935.1| PREDICTED: GEM-like protein 4 [Vitis vinifera] gi|297742758|emb|CBI35392.3| unnamed protein product [Vitis vinifera]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 97/162 (59%), Positives = 117/162 (72%), Gaps = 5/162 (3%)

Query: 8   EQVMGISICSTKYPVKNSPMRFLPEVPDESGGKQIVPSPANGSKNAYPLLKRI-KKADRF 66
           E V+GI + S+ YPV+ S   +  E P     +   PSP +   +    + ++ KKAD F
Sbjct: 7   EHVIGIPVSSSAYPVEGSGKGYFLEPPT----RHQTPSPPDQGDSVTDRMNKLGKKADSF 62

Query: 67  ATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLST 126
             GVREHVRL P I+E VKGKLSLGARI+QVGG+ K+FK+LF V EGE+LLK  QCYLST
Sbjct: 63  VNGVREHVRLAPNISETVKGKLSLGARILQVGGVEKIFKRLFRVREGEKLLKASQCYLST 122

Query: 127 TAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVII 168
           TAGPIAGLLFIST+KIAFCSER+IK  S NGE  RIHYKV+I
Sbjct: 123 TAGPIAGLLFISTDKIAFCSERAIKFSSANGELVRIHYKVLI 164

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224148499|ref|XP_002336664.1| predicted protein [Populus trichocarpa] gi|222836479|gb|EEE74886.1| predicted protein [Populus trichocarpa]

 Score =  188 bits (478), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 96/165 (58%), Positives = 124/165 (75%), Gaps = 15/165 (9%)

Query: 8   EQVMGISICSTKYPVKNSPMRFLPEVPDESGGKQIVPSPANGSKNAYPLLKRI----KKA 63
           +QV+GI I +  Y V+  P   L     E+  ++ +P+  +       +LKR+    KKA
Sbjct: 6   KQVIGIPIRTASYAVEKMPRLLL-----ENAEQRYIPNKIDS------MLKRMNKLGKKA 54

Query: 64  DRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCY 123
           D+FA G+REH+RLG KITE + GKLSLGARI+QVGG+ KVF++LF+V+EGERLL+ CQCY
Sbjct: 55  DKFAHGIREHMRLGTKITETLVGKLSLGARILQVGGVKKVFRQLFSVSEGERLLRVCQCY 114

Query: 124 LSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVII 168
           LSTTAGPIAGLLFISTEK+AFCSERSIK+ SP G+  RIHYKV++
Sbjct: 115 LSTTAGPIAGLLFISTEKLAFCSERSIKLSSPEGKLVRIHYKVVV 159

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523782|ref|XP_004168902.1| PREDICTED: GEM-like protein 4-like [Cucumis sativus]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 101/175 (57%), Positives = 125/175 (71%), Gaps = 10/175 (5%)

Query: 1   MKTISLVEQVMGISICSTKYPVKNSPMRFLPEVPDE---SGGKQIVPSPANGSKNAYPLL 57
           M+T+ L   V+G  I ST   V+ S  R LP++  +   S      P+    SK++  +L
Sbjct: 1   METL-LQRHVIGFPIGSTALQVEQSVQRLLPDLAGQYNISSSDTKYPALKQCSKDS--ML 57

Query: 58  KRI----KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEG 113
            R+    K+AD FA GVREHVRLG KI+E VKGKLSLGARI+QVGG+ K+FK+LFNV +G
Sbjct: 58  SRVNKLGKRADSFAHGVREHVRLGSKISETVKGKLSLGARILQVGGLRKIFKQLFNVGDG 117

Query: 114 ERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVII 168
           E+LLK   CYLSTTAGPIAGLLFIST KIAFCS+RSIK+ SP+GE  R HYKV+I
Sbjct: 118 EKLLKAVHCYLSTTAGPIAGLLFISTNKIAFCSDRSIKVSSPSGELIRFHYKVVI 172

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464298|ref|XP_004149866.1| PREDICTED: GEM-like protein 4-like [Cucumis sativus]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/175 (57%), Positives = 125/175 (71%), Gaps = 10/175 (5%)

Query: 1   MKTISLVEQVMGISICSTKYPVKNSPMRFLPEVPDE---SGGKQIVPSPANGSKNAYPLL 57
           M+T+ L   V+G  I ST   V+ S  R LP++  +   S      P+    SK++  +L
Sbjct: 1   METL-LQRHVIGFPIGSTALQVEQSVQRLLPDLAGQYNISSSDTKYPALKQCSKDS--ML 57

Query: 58  KRI----KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEG 113
            R+    K+AD FA GVREHVRLG KI+E VKGKLSLGARI+QVGG+ K+FK+LFNV +G
Sbjct: 58  SRVNKLGKRADSFAHGVREHVRLGSKISETVKGKLSLGARILQVGGLRKIFKQLFNVGDG 117

Query: 114 ERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVII 168
           E+LLK   CYLSTTAGPIAGLLFIST KIAFCS+RSIK+ SP+GE  R HYKV+I
Sbjct: 118 EKLLKAVHCYLSTTAGPIAGLLFISTNKIAFCSDRSIKVSSPSGELIRFHYKVVI 172

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081318|ref|XP_002306368.1| predicted protein [Populus trichocarpa] gi|222855817|gb|EEE93364.1| predicted protein [Populus trichocarpa]

 Score =  184 bits (468), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 99/165 (60%), Positives = 123/165 (74%), Gaps = 11/165 (6%)

Query: 8   EQVMGISICSTKYPVKNSPMRFLPEVPDESGGKQIVPSPANGSKNAYPLLKRI----KKA 63
           +QV+GI I S K+ V+ SP+R+LP  PD     Q  P+     K++  +L+R+    +KA
Sbjct: 7   DQVIGIPINSGKFTVRRSPVRYLPG-PD----GQYPPALKKTKKDS--ILERMNKLGRKA 59

Query: 64  DRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCY 123
           D FA GVREHVRLG KITE VKGKLSLGA+I+Q GG+ K FK LF V+E E+LLK  Q Y
Sbjct: 60  DSFANGVREHVRLGSKITETVKGKLSLGAKILQEGGVEKTFKLLFVVSEDEKLLKVSQSY 119

Query: 124 LSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVII 168
           LSTTAGP+AGLLFIS +K+AFCSERSIK  SPNG+S R+HYKV+I
Sbjct: 120 LSTTAGPLAGLLFISNQKLAFCSERSIKFSSPNGKSVRVHYKVVI 164

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
TAIR|locus:2150823	222	AT5G08350 "AT5G08350" [Arabido	0.864	0.662	0.581	2.9e-39
TAIR|locus:2166806	219	AT5G23370 "AT5G23370" [Arabido	0.858	0.666	0.562	4.9e-37
TAIR|locus:2166791	210	AT5G23360 "AT5G23360" [Arabido	0.829	0.671	0.526	2.8e-34
TAIR|locus:2133387	233	AT4G01600 "AT4G01600" [Arabido	0.635	0.463	0.376	2.5e-19
TAIR|locus:2183901	272	AT5G13200 "AT5G13200" [Arabido	0.635	0.397	0.361	8.3e-19
TAIR|locus:2032185	259	FIP1 "AT1G28200" [Arabidopsis	0.623	0.409	0.376	4.1e-17
TAIR|locus:505006267	299	GEM "AT2G22475" [Arabidopsis t	0.623	0.354	0.339	9.8e-16

TAIR|locus:2150823 AT5G08350 "AT5G08350" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 89/153 (58%), Positives = 114/153 (74%)

Query:    19 KYPV-KNSPMRFLPEVPDESGGKQIVPSPANGSK--NAYPLLKRIKKADRFATGVREHVR 75
             +YP  K +P+ +LP+ P  S  K  VP+ +  S+  N   +LKR KK D F  GVR+  +
Sbjct:    12 RYPAAKATPVGYLPD-P-ASFNKFRVPASSKKSEQSNVKSILKR-KKTDGFTNGVRDQSK 68

Query:    76 LGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLL 135
             + PK+TE VK KLSLGARI+QVGG+ K+FK+LF V+EGE+L K  QCYLSTTAGPIAGLL
Sbjct:    69 IRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLL 128

Query:   136 FISTEKIAFCSERSIKIPSPNGESARIHYKVII 168
             FIS++K+AFCSERSIK+ SP G+  R+HYKV I
Sbjct:   129 FISSKKMAFCSERSIKVDSPQGDIIRVHYKVSI 161

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2166806 AT5G23370 "AT5G23370" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 86/153 (56%), Positives = 111/153 (72%)

Query:    20 YP-VKNSPMRFLPEVPDESGGKQIVPSPANGS---KNAYPLLKRIKKADRFATGVREHVR 75
             +P VK SP  +LP+ P  S  K  +P+ +  S        +L++ KK D F  GVR+  +
Sbjct:    13 FPAVKTSPAGYLPD-P-ASINKLQIPTSSKFSFLTGKGKSMLRK-KKNDSFTNGVRDQDK 69

Query:    76 LGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLL 135
             LGPK+TE VK KLSLGARI+Q+GG+ K++K+LF V++ E+L K  QCYLSTTAGPIAGLL
Sbjct:    70 LGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLL 129

Query:   136 FISTEKIAFCSERSIKIPSPNGESARIHYKVII 168
             FIS++KIAFCSERSIK+ SP GE  R+HYKV I
Sbjct:   130 FISSKKIAFCSERSIKVASPQGELNRVHYKVSI 162

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2166791 AT5G23360 "AT5G23360" [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 79/150 (52%), Positives = 107/150 (71%)

Query:    20 YPVKNS-PMRFLPEVPDESGGKQIVPSPANGSKNAYPLLKRIKKADRFATGVREHVRLGP 78
             +P  N+ P+ +LP+ P  S  K  +P+ +  S     +L++ KK D F  G R+  +LGP
Sbjct:    13 FPAVNTAPVGYLPD-P-ASINKLQIPTSSKVS-----MLQK-KKTDSFTNGARDQDKLGP 64

Query:    79 KITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFIS 138
             K+TE VK KLSLGA+I+Q+GG+ K++K+LF V + E+L K  QCYLSTT G IAGLLFIS
Sbjct:    65 KLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGLLFIS 124

Query:   139 TEKIAFCSERSIKIPSPNGESARIHYKVII 168
             ++KIAFCSERSIK+ SP G+  R+HYKV I
Sbjct:   125 SKKIAFCSERSIKVTSPQGDLTRVHYKVSI 154

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2133387 AT4G01600 "AT4G01600" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 41/109 (37%), Positives = 72/109 (66%)

Query:    61 KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTC 120
             +KA+    G+++H++  P I++    +LS G ++I  GG  +VF++ F V   E+LL + 
Sbjct:    65 RKAEALVGGLKDHLKFSPSISDAAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSF 124

Query:   121 QCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSP-NGESARIHYKVII 168
              CY+STT+GP+ G+++IS  +IAFCS+ +I++PS   G     +YKV++
Sbjct:   125 VCYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVAAYYKVVM 173

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2183901 AT5G13200 "AT5G13200" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 39/108 (36%), Positives = 70/108 (64%)

Query:    61 KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTC 120
             +KA+  A  +  +++ GP ++E   GK++L A+ I  GG   +F+++F     E L KT 
Sbjct:   102 RKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGTEPNETLKKTF 161

Query:   121 QCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESARIHYKVII 168
              CYLSTT GP+AG +++S  ++AFCS+R +   +P+G+ +  +Y+V++
Sbjct:   162 ACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVV 209

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2032185 FIP1 "AT1G28200" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 41/109 (37%), Positives = 67/109 (61%)

Query:    61 KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTC 120
             KKA+  A    +H++ GP + +    +++ G +I+  GG  KVFK+ F+    E+LLKT 
Sbjct:    97 KKAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTY 156

Query:   121 QCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESAR-IHYKVII 168
              CYLST+AGP+ G++++ST K+AF S+  +      GE     +YKV++
Sbjct:   157 ACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSYKE--GEQTLWSYYKVVL 203

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

TAIR|locus:505006267 GEM "AT2G22475" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 37/109 (33%), Positives = 63/109 (57%)

Query:    61 KKADRFATGVREHVRLGPKITEIVKGKLSLGARIIQVGGMGKVFKKLFNVAEGERLLKTC 120
             KK +  A    +H+R  P   +   G+++   ++   GG  K+F++ F     E+LL + 
Sbjct:   134 KKTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSF 193

Query:   121 QCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPSPNGESAR-IHYKVII 168
              CYLST+AGP+ G+L+IS+ K+A+CS+  +     NG+     +YKV+I
Sbjct:   194 ACYLSTSAGPVMGVLYISSAKLAYCSDNPLSYK--NGDQTEWSYYKVVI 240


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.138   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      170       170   0.00086  108 3  11 22  0.39    32
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  536 (57 KB)
  Total size of DFA:  126 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.36u 0.20s 15.56t   Elapsed:  00:00:00
  Total cpu time:  15.36u 0.20s 15.56t   Elapsed:  00:00:00
  Start:  Mon May 20 19:29:59 2013   End:  Mon May 20 19:29:59 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010026 "trichome differentiation" evidence=IMP

GO:0010482 "regulation of epidermal cell division" evidence=IMP

GO:0048765 "root hair cell differentiation" evidence=IMP

GO:0051567 "histone H3-K9 methylation" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0042732 "D-xylose metabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FTA0	GEML4_ARATH	No assigned EC number	0.5751	0.8647	0.6621	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	170
cd13222	127	cd13222, PH-GRAM_GEM, GLABRA 2 expression modulato	1e-43
smart00568	60	smart00568, GRAM, domain in glucosyltransferases,	7e-07
pfam02893	60	pfam02893, GRAM, GRAM domain	1e-04

>gnl|CDD|241376 cd13222, PH-GRAM_GEM, GLABRA 2 expression modulator (GEM) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score =  140 bits (356), Expect = 1e-43
 Identities = 44/74 (59%), Positives = 57/74 (77%)

Query: 95  IQVGGMGKVFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIKIPS 154
           +Q GG+ KVF++ F V  GE+LLK  QCYLSTTAGP+AG LFIST K+AFCS+R +   S
Sbjct: 1   LQEGGVEKVFRQTFGVGPGEKLLKASQCYLSTTAGPVAGTLFISTAKVAFCSDRPLSFTS 60

Query: 155 PNGESARIHYKVII 168
           P+G+  R +YKV+I
Sbjct: 61  PSGQLVRSYYKVVI 74

GEM interacts with CDT1, a pre-replication complex component that is involved in DNA replication, and with TTG1 (Transparent Testa GLABRA 1), a transcriptional regulator of epidermal cell fate. GEM controls the level of histone H3K9 methylation at the promoters of the GLABRA 2 and CAPRICE (CPC) genes, which are essential for epidermis patterning. GEM also regulates cell division in different root cell types. GEM regulates proliferation-differentiation decisions by integrating DNA replication, cell division and transcriptional controls. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 127

>gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

 Score = 44.1 bits (105), Expect = 7e-07
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 109 NVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSIK 151
            + E E+L+    CYLS T GP+ G L+IS  ++ F S    K
Sbjct: 1   KLPEEEKLIADYSCYLSRT-GPVQGRLYISNYRLCFRSNLPGK 42

Length = 60

>gnl|CDD|217271 pfam02893, GRAM, GRAM domain

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 112 EGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERS 149
             E+L+    CYL     P+ G L+++  ++ F S++ 
Sbjct: 3   PEEKLIADYSCYLQRPISPVQGRLYLTNNRLCFRSDKF 40

The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	170
PF02893	69	GRAM: GRAM domain; InterPro: IPR004182 The GRAM do	99.04
smart00568	61	GRAM domain in glucosyltransferases, myotubularins	98.77
PF14470	96	bPH_3: Bacterial PH domain	89.85

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.04  E-value=2.1e-10  Score=77.82  Aligned_cols=48  Identities=33%  Similarity=0.612  Sum_probs=32.1

Q ss_pred             eeeeccccCcCceeeccceeeeecCccceeeEEEEeeceEEEeecCee
Q 030859          103 VFKKLFNVAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSI  150 (170)
Q Consensus       103 vFkq~F~~~~~EkLlKa~~CYLSTtaGPvaG~LfiSt~kvAFcSdrpl  150 (170)
                      -|++.|...++|+|...+.|+|..+.+|+.|.||||+.+|.|+|+.+-
T Consensus         2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~   49 (69)
T PF02893_consen    2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFG   49 (69)
T ss_dssp             ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSS
T ss_pred             cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCC
Confidence            589999999999999999999999999999999999999999997654

It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.

>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=98.77  E-value=1.3e-08  Score=67.49  Aligned_cols=40  Identities=38%  Similarity=0.719  Sum_probs=36.2

Q ss_pred             cCcCceeeccceeeeecCccceeeEEEEeeceEEEeecCee
Q 030859          110 VAEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSERSI  150 (170)
Q Consensus       110 ~~~~EkLlKa~~CYLSTtaGPvaG~LfiSt~kvAFcSdrpl  150 (170)
                      ..++|+|...|.|+|+ +.+|+.|.||||+.++.|+|+.+-
T Consensus         2 l~~~E~l~~~~~C~l~-~~~~~~G~lyiT~~~l~F~S~~~~   41 (61)
T smart00568        2 LPEEEKLIADYSCYLS-RDGPVQGRLYISNYRLCFRSDLPG   41 (61)
T ss_pred             cCCCcEEEEEEEeEEC-CCccccEEEEEECCEEEEEccCCC
Confidence            4589999999999999 679999999999999999997554

>PF14470 bPH_3: Bacterial PH domain

Probab=89.85  E-value=0.68  Score=32.03  Aligned_cols=38  Identities=16%  Similarity=0.243  Sum_probs=34.4

Q ss_pred             CcCceeeccceeeeecCccceeeEEEEeeceEEEeecC
Q 030859          111 AEGERLLKTCQCYLSTTAGPIAGLLFISTEKIAFCSER  148 (170)
Q Consensus       111 ~~~EkLlKa~~CYLSTtaGPvaG~LfiSt~kvAFcSdr  148 (170)
                      .+||+.+-...|.+-...+.-.|+|+++++||-||+-.
T Consensus         2 ~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~   39 (96)
T PF14470_consen    2 KEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKG   39 (96)
T ss_pred             cCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcc
Confidence            58999999999998877788899999999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	170
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	82.03

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*

Probab=82.03  E-value=1.4  Score=40.66  Aligned_cols=40  Identities=20%  Similarity=0.366  Sum_probs=31.8

Q ss_pred             cccCcCceeeccce--eeeecCccceeeEEEEeeceEEEeec
Q 030859          108 FNVAEGERLLKTCQ--CYLSTTAGPIAGLLFISTEKIAFCSE  147 (170)
Q Consensus       108 F~~~~~EkLlKa~~--CYLSTtaGPvaG~LfiSt~kvAFcSd  147 (170)
                      |...|||.++..-.  =|+.--.|++.|+|||++-|+.|.++
T Consensus         7 ~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~   48 (528)
T 1zsq_A            7 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSM   48 (528)
T ss_dssp             CCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEES
T ss_pred             CccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEcc
Confidence            66789999985521  15555578999999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	170
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	91.86

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.86  E-value=0.11  Score=37.15  Aligned_cols=38  Identities=21%  Similarity=0.368  Sum_probs=28.5

Q ss_pred             cCcCceeecc--ceeeeecCccceeeEEEEeeceEEEeec
Q 030859          110 VAEGERLLKT--CQCYLSTTAGPIAGLLFISTEKIAFCSE  147 (170)
Q Consensus       110 ~~~~EkLlKa--~~CYLSTtaGPvaG~LfiSt~kvAFcSd  147 (170)
                      ..|||.+.-.  -.=|+..-.||+-|+|||++-|+.|-++
T Consensus         5 llpGE~i~~~~~~V~~~~p~~~~~~G~L~lTnyrliF~~~   44 (125)
T d1zsqa1           5 LLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSM   44 (125)
T ss_dssp             CCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEES
T ss_pred             cCCCcEEEEeeccEEEEccCCCccceEEEEEeeEEEEEcC
Confidence            4578876522  2245666789999999999999999764