Citrus Sinensis ID: 030907

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MVLPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYGHATGGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFKHATADEAKLAKPA
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHEHcccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccc
Coil and Loop (DISEMBL)
MVLPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIyghatggeirplnEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQRglsgifsfkhatadeaklakpa
Flexible Loop (DISEMBL)
mvlpvvklGTLALKTLSKPVAAKLKQQaaihprfrqsiVGIAQANHRITTRMQRRIYGHAtggeirplnEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQrsarsearkeeirKQELEALRQRDEGLARELELLRQKIEELEQLAKQrglsgifsfkhatadeaklakpa
Low Complexity Region (SEG)
MVLPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYGHATGGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFKHATADEAKLAKPA
Disordered region (IsUnstruct)
***PVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYGHATGGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEV****************************************************GIF****************
Disordered Region (DISOPRED)
MVLPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYG*******RPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFE*********************LRQRDEGLARELELLRQKIE*******************************
Disordered Region (DISEMBL)
MVLPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYGHATGGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQR**********IRKQELEALRQRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFKHATADEAKLAKPA
Disordered Region (DISPRO)
MVLPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYGHATGGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFKH************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVLPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYGHATGGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGLSGIFSFKHATADEAKLAKPA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	169	2.2.26 [Sep-21-2011]
Q9P7W0	218	OPA3-like protein OS=Schi	yes	no	0.627	0.486	0.412	5e-16
Q1L9A2	157	Optic atrophy 3 protein h	yes	no	0.828	0.891	0.366	1e-14
Q9VCG3	255	Putative OPA3-like protei	yes	no	0.668	0.443	0.336	6e-13
Q54NW1	199	OPA3-like protein OS=Dict	yes	no	0.792	0.673	0.279	2e-11
Q641S2	151	Optic atrophy 3 protein h	N/A	no	0.828	0.927	0.349	2e-11
Q9H6K4	179	Optic atrophy 3 protein O	no	no	0.692	0.653	0.352	1e-05
Q505D7	179	Optic atrophy 3 protein h	yes	no	0.686	0.648	0.341	2e-05
Q05B66	191	Optic atrophy 3 protein h	no	no	0.798	0.706	0.321	3e-05

>sp|Q9P7W0|OPA3_SCHPO OPA3-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1703.11 PE=3 SV=1

 Score = 83.6 bits (205), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 65/109 (59%), Gaps = 3/109 (2%)

Query: 6   VKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQ--RRIYGHATGG 63
           +K+G+L ++TLSKP+A  +K QA  H  FR++ +  AQ  HR   R+    R        
Sbjct: 6   LKIGSLLVRTLSKPIANTIKAQAKEHKAFRKACIEFAQWMHRAEFRITGINRAKSGGANV 65

Query: 64  EIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSE-ARKEEI 111
            +RPLN+ KAV A    + E FIFTVAG A++FE  R+ R E  R++E+
Sbjct: 66  RLRPLNDAKAVDAGATFLSETFIFTVAGGAILFETWRARRKEKNRRDEV 114

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q1L9A2|OPA3_DANRE Optic atrophy 3 protein homolog OS=Danio rerio GN=opa3 PE=3 SV=1

 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 2/142 (1%)

Query: 3   LPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSI-VGIAQANHRITTRMQRRIYGHAT 61
            P+ KL  L ++ LSKPVA ++K  A     F+  I +  AQA H I  R + RI G   
Sbjct: 6   FPIAKLLYLGVRQLSKPVANRIKAGARRSEFFKNYICLPPAQAYHWIEMRTKMRIMGF-R 64

Query: 62  GGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQ 121
           G  I+PLNE+ A +   +L+GE  IF + G  ++ E  R A +  RKEE   Q + +L+ 
Sbjct: 65  GSTIKPLNEDAAAELGAELLGEAIIFVIGGGCMVLEYSRQAANSRRKEEELAQSITSLQT 124

Query: 122 RDEGLARELELLRQKIEELEQL 143
           +   LA   E L  +I E+ +L
Sbjct: 125 QLGELALTTETLDAQIREVNRL 146

May play some role in mitochondrial processes.

Danio rerio (taxid: 7955)

>sp|Q9VCG3|OPA32_DROME Putative OPA3-like protein CG13603 OS=Drosophila melanogaster GN=CG13601 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 3/116 (2%)

Query: 2   VLPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYGHAT 61
           V P  KLG LA+K +SKP+A  +K  A   P FR+ I  +  A       ++ +++    
Sbjct: 5   VFPAAKLGILAIKQVSKPIANVIKSNAKSSPFFRKYIC-MPPAQFYNWVEVKTKMWALNM 63

Query: 62  GGEIR--PLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQE 115
           GG +   PLNE  A++   +L+GE  IF++    +IFE  R    E +K E+ + E
Sbjct: 64  GGRVNVPPLNEAMAIELGANLLGEFIIFSIGAGLLIFEYSRQTIKENKKNELAQSE 119

Drosophila melanogaster (taxid: 7227)

>sp|Q54NW1|OPA3_DICDI OPA3-like protein OS=Dictyostelium discoideum GN=DDB_G0284959 PE=3 SV=1

 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 81/143 (56%), Gaps = 9/143 (6%)

Query: 1   MVLPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYGHA 60
           MVLP++K+G+L +K+L+KP++ ++K +A+  P F   +V  A+  H++  ++ +  +   
Sbjct: 1   MVLPLLKVGSLLIKSLAKPLSKQIKIRASKSPIFHDRVVRGARLWHKLDLKLTK--FNGD 58

Query: 61  TGGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALR 120
           T  +   LN   A+    +++ E F+ +VA   +++E  RS+  + +KE       EAL+
Sbjct: 59  TTRKPVDLNVNAAIDLGTEIVSEAFLLSVAIGLLLYETSRSSEKDKKKE-------EALQ 111

Query: 121 QRDEGLARELELLRQKIEELEQL 143
            R + L  +LE+ ++ I  L  +
Sbjct: 112 NRFKNLEEKLEVQQETINNLTNV 134

Dictyostelium discoideum (taxid: 44689)

>sp|Q641S2|OPA3_XENLA Optic atrophy 3 protein homolog OS=Xenopus laevis GN=opa3 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 3   LPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSI-VGIAQANHRITTRMQRRIYGHAT 61
            P+ KL  L ++ +SKP+A ++K  A     FR  + +  AQ  H +  R + RI G   
Sbjct: 6   FPIAKLLYLGIRQISKPLANRIKAGARRSEFFRTYVCLPPAQVYHWVEMRSKMRIMGF-R 64

Query: 62  GGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKE---EIRKQELEA 118
           G  I+PLNE+ A +   +L+GE  IF + G  ++ E  R + +  RKE   E R   +EA
Sbjct: 65  GAVIKPLNEDAAAELGAELLGEAIIFLIGGGCMVAEYSRQSANSHRKEEEMEARLGSMEA 124

Query: 119 LRQRDEGLARELELLRQKIEELEQLA 144
              R   L  ELE  R ++ E +QLA
Sbjct: 125 EIARLGLLTEELE-TRARVTERQQLA 149

May play some role in mitochondrial processes.

Xenopus laevis (taxid: 8355)

>sp|Q9H6K4|OPA3_HUMAN Optic atrophy 3 protein OS=Homo sapiens GN=OPA3 PE=1 SV=1

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 3   LPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIV-GIAQANHRITTRMQRRIYGHAT 61
            P+ KL  L ++ +SKP+A ++K+ A     F+  I    AQ  H +  R + RI G   
Sbjct: 6   FPMAKLLYLGIRQVSKPLANRIKEAARRSEFFKTYICLPPAQLYHWVEMRTKMRIMGF-R 64

Query: 62  GGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALR 120
           G  I+PLNEE A +   +L+GE  IF V G  ++ E  R    +  KEE ++    ALR
Sbjct: 65  GTVIKPLNEEAAAELGAELLGEATIFIVGGGCLVLEYWRHQAQQRHKEEEQRAAWNALR 123

May play some role in mitochondrial processes.

Homo sapiens (taxid: 9606)

>sp|Q505D7|OPA3_MOUSE Optic atrophy 3 protein homolog OS=Mus musculus GN=Opa3 PE=1 SV=1

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 4/120 (3%)

Query: 3   LPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGI--AQANHRITTRMQRRIYGHA 60
            P+ KL  L ++ +SKP+A ++K  AA    F ++ + +  AQ  H +  R + RI G  
Sbjct: 6   FPMAKLFYLGIRQVSKPLANRIKD-AARRSEFFKTYICLPPAQLYHWVEMRTKMRIMGF- 63

Query: 61  TGGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALR 120
            G  I+PLNEE A +   +L+GE  IF V G  ++ E  R    +  KEE ++    AL+
Sbjct: 64  RGTTIKPLNEEAAAELGAELLGEATIFIVGGGCLVLEYWRHQTQQRNKEEEQRAAWNALQ 123

May play some role in mitochondrial processes.

Mus musculus (taxid: 10090)

>sp|Q05B66|OPA3_BOVIN Optic atrophy 3 protein homolog OS=Bos taurus GN=OPA3 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 2/137 (1%)

Query: 3   LPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIV-GIAQANHRITTRMQRRIYGHAT 61
            P+ KL  L ++ +SKP+A ++K+ A     F+  I    AQ  H +  R + R+ G   
Sbjct: 6   FPMAKLLYLGIRQVSKPLANRIKEAARRSEFFKTYICLPPAQLYHWVEMRAKMRLMGF-N 64

Query: 62  GGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQ 121
              I+PLNEE A +   +L+GE  IF VA   ++ E  R    + RKE  +    +A+R 
Sbjct: 65  AETIKPLNEEAAAELGAELLGEATIFLVACGCLVLEYSRQKTQQRRKEGEQLAAWDAMRD 124

Query: 122 RDEGLARELELLRQKIE 138
             + LA  LE L+ +++
Sbjct: 125 EVDHLALVLEALQAQVQ 141

May play some role in mitochondrial processes.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
224116272	168	predicted protein [Populus trichocarpa]	0.988	0.994	0.790	7e-70
225446505	169	PREDICTED: OPA3-like protein [Vitis vini	0.994	0.994	0.738	1e-66
225443566	168	PREDICTED: OPA3-like protein [Vitis vini	0.952	0.958	0.788	2e-66
449433790	169	PREDICTED: OPA3-like protein-like [Cucum	1.0	1.0	0.727	4e-66
357446791	169	hypothetical protein MTR_2g014860 [Medic	0.952	0.952	0.751	2e-64
356533709	169	PREDICTED: OPA3-like protein-like [Glyci	1.0	1.0	0.692	1e-61
449453545	169	PREDICTED: OPA3-like protein-like [Cucum	0.988	0.988	0.658	2e-61
297845798	171	hypothetical protein ARALYDRAFT_890393 [	0.923	0.912	0.730	3e-59
18396819	171	Optic atrophy 3 protein (OPA3) [Arabidop	0.923	0.912	0.730	3e-59
255568367	169	Optic atrophy 3 protein, putative [Ricin	0.934	0.934	0.689	8e-59

>gi|224116272|ref|XP_002331941.1| predicted protein [Populus trichocarpa] gi|222874718|gb|EEF11849.1| predicted protein [Populus trichocarpa]

 Score =  268 bits (684), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 132/167 (79%), Positives = 151/167 (90%)

Query: 1   MVLPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYGHA 60
           MVLP++KLGTLALKTLSKP+A+++KQQAA HP+FRQ IV IAQANHRITTR QRRIYGHA
Sbjct: 1   MVLPLLKLGTLALKTLSKPLASRIKQQAAFHPKFRQFIVNIAQANHRITTRTQRRIYGHA 60

Query: 61  TGGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALR 120
           T  EIRPLNEEKAVQAAVDLIGE+F+FTVAGAAVIFEVQRSA+SEARKEE RKQELEA++
Sbjct: 61  TDVEIRPLNEEKAVQAAVDLIGEVFVFTVAGAAVIFEVQRSAKSEARKEEKRKQELEAMK 120

Query: 121 QRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFKHATADEAKLAK 167
           QRDE LARE+ELL+ K++E+EQLAK RGL GIF  KH+ A+E K AK
Sbjct: 121 QRDEDLAREVELLKHKLQEIEQLAKGRGLGGIFQLKHSAAEEGKAAK 167

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446505|ref|XP_002278607.1| PREDICTED: OPA3-like protein [Vitis vinifera] gi|302143372|emb|CBI21933.3| unnamed protein product [Vitis vinifera]

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 124/168 (73%), Positives = 146/168 (86%)

Query: 1   MVLPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYGHA 60
           M+LPVVKLGTLALKT+ KP+AA+LK+ A +HP+FRQ I+ IAQANH+ TT MQRRIYGHA
Sbjct: 1   MILPVVKLGTLALKTMCKPIAARLKKDAGLHPKFRQFIINIAQANHQFTTTMQRRIYGHA 60

Query: 61  TGGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALR 120
           T  EIRPLNEEKAVQAA DL+GE+F+FTVAGAAVIFEVQRS+RSEARKEE+RKQEL+AL+
Sbjct: 61  TNVEIRPLNEEKAVQAAADLVGELFVFTVAGAAVIFEVQRSSRSEARKEELRKQELQALK 120

Query: 121 QRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFKHATADEAKLAKP 168
           QRDE L RE+E L+ K+EELEQLAK +GLSG+F+FKHA   E   A P
Sbjct: 121 QRDEDLVREVEQLKHKLEELEQLAKGQGLSGLFNFKHAHVTEDGKALP 168

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443566|ref|XP_002273293.1| PREDICTED: OPA3-like protein [Vitis vinifera] gi|297740446|emb|CBI30628.3| unnamed protein product [Vitis vinifera]

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 127/161 (78%), Positives = 143/161 (88%)

Query: 1   MVLPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYGHA 60
           MVLP+VKLGTLALKTLSKP+A++LKQQA +HP+FRQ IV +AQANHR+TT MQRRIYGHA
Sbjct: 1   MVLPLVKLGTLALKTLSKPIASRLKQQAGLHPQFRQFIVNMAQANHRMTTTMQRRIYGHA 60

Query: 61  TGGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALR 120
           T  EIRPLNEEKAVQAAVDLIGE+F+FTVAG AVIFEVQRS+RSEARKEEIRKQELE LR
Sbjct: 61  TDVEIRPLNEEKAVQAAVDLIGELFVFTVAGVAVIFEVQRSSRSEARKEEIRKQELEELR 120

Query: 121 QRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFKHATAD 161
           QRDE LARE+ELL+ K+ E+EQLAK RGL GIF  K A  +
Sbjct: 121 QRDENLAREVELLKHKLGEIEQLAKGRGLGGIFKLKPAQTE 161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433790|ref|XP_004134680.1| PREDICTED: OPA3-like protein-like [Cucumis sativus] gi|449479266|ref|XP_004155553.1| PREDICTED: OPA3-like protein-like [Cucumis sativus]

 Score =  255 bits (652), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 123/169 (72%), Positives = 146/169 (86%)

Query: 1   MVLPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYGHA 60
           MVLP++KLGTLALKTLSKP+  +LK+QAA+HPRFRQ I+ +AQ NHR++T+MQRRIY HA
Sbjct: 1   MVLPLLKLGTLALKTLSKPLGNRLKKQAALHPRFRQFIINVAQMNHRMSTQMQRRIYSHA 60

Query: 61  TGGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALR 120
           T  EIRPL+EEKAVQAAVDLIGE+F+FTVAGA VIFEVQRSARSEARKEE+R+QE+EALR
Sbjct: 61  TDVEIRPLDEEKAVQAAVDLIGEVFVFTVAGAVVIFEVQRSARSEARKEEVRRQEIEALR 120

Query: 121 QRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFKHATADEAKLAKPA 169
           QRDE L  E+ELL+ K+ ELEQ AK RGL GI +FKHA ++    AKPA
Sbjct: 121 QRDESLVAEMELLKHKLVELEQAAKGRGLGGILNFKHANSESGNSAKPA 169

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446791|ref|XP_003593671.1| hypothetical protein MTR_2g014860 [Medicago truncatula] gi|355482719|gb|AES63922.1| hypothetical protein MTR_2g014860 [Medicago truncatula]

 Score =  250 bits (638), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 121/161 (75%), Positives = 147/161 (91%)

Query: 2   VLPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYGHAT 61
           +LP++KLGTLALKTLSKP+A KLKQQAAIHPRFRQ IV +AQ+NH+ITT+MQRRIYGHAT
Sbjct: 1   MLPLLKLGTLALKTLSKPLAGKLKQQAAIHPRFRQLIVNMAQSNHQITTKMQRRIYGHAT 60

Query: 62  GGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQ 121
             EIRPLNEEKAVQAAVDLIGE+F+F+VA A +IFEVQRSARSEARKEEIRK+ELEA+RQ
Sbjct: 61  DVEIRPLNEEKAVQAAVDLIGELFVFSVAVAVLIFEVQRSARSEARKEEIRKRELEAVRQ 120

Query: 122 RDEGLARELELLRQKIEELEQLAKQRGLSGIFSFKHATADE 162
           +++GLA E+ELL+ +++ELEQLA+ RGL+GI +FKH  + E
Sbjct: 121 KNDGLAEEVELLKLRLQELEQLARGRGLTGILNFKHIISKE 161

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533709|ref|XP_003535402.1| PREDICTED: OPA3-like protein-like [Glycine max]

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 117/169 (69%), Positives = 147/169 (86%)

Query: 1   MVLPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYGHA 60
           MVLP++KLGTLA+KTLSKPVA++LKQQAA+HPRFR+ IV +AQ+NH+ITT+MQRRIYGHA
Sbjct: 1   MVLPLLKLGTLAVKTLSKPVASRLKQQAALHPRFRELIVRMAQSNHQITTKMQRRIYGHA 60

Query: 61  TGGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALR 120
           T  EIRPLNEEKAVQAAVDLIGE+F+F+VAG  +IFEVQRSARSEARKEE RKQEL+ ++
Sbjct: 61  TDVEIRPLNEEKAVQAAVDLIGELFVFSVAGVLLIFEVQRSARSEARKEEQRKQELQDVK 120

Query: 121 QRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFKHATADEAKLAKPA 169
           Q++E LA E+ELL+ +I+ELEQ+A+ RGL GI +F++   +  K  K A
Sbjct: 121 QKNENLAEEVELLKHRIQELEQMARGRGLIGILNFRNGNTEIGKAEKTA 169

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453545|ref|XP_004144517.1| PREDICTED: OPA3-like protein-like [Cucumis sativus] gi|449515849|ref|XP_004164960.1| PREDICTED: OPA3-like protein-like [Cucumis sativus]

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 110/167 (65%), Positives = 142/167 (85%)

Query: 1   MVLPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYGHA 60
           M+LPVVKLG LALKT+ KP+A +LK++A +HP+FRQ I+  AQANHR +T +QRRIYG+A
Sbjct: 1   MILPVVKLGALALKTICKPIANRLKKEAGLHPKFRQCIINFAQANHRFSTNVQRRIYGYA 60

Query: 61  TGGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALR 120
           T   IRPLNEEKAVQAA DL+GE+F+FTVAG A+IFEVQRS+RSEARKEE+R+QELEA++
Sbjct: 61  TDVAIRPLNEEKAVQAAADLLGELFVFTVAGTAIIFEVQRSSRSEARKEELRRQELEAMK 120

Query: 121 QRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFKHATADEAKLAK 167
           QRD+ +ARE+E+L+QKIE LE+L+K RGL+G+F F+H    E +  K
Sbjct: 121 QRDDDIAREIEILKQKIENLEELSKGRGLTGLFHFRHPHTTEGENVK 167

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845798|ref|XP_002890780.1| hypothetical protein ARALYDRAFT_890393 [Arabidopsis lyrata subsp. lyrata] gi|297336622|gb|EFH67039.1| hypothetical protein ARALYDRAFT_890393 [Arabidopsis lyrata subsp. lyrata]

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 114/156 (73%), Positives = 135/156 (86%)

Query: 1   MVLPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYGHA 60
           MVLP++KLGTLA+KT+SKP+A++LK QA +HP+FRQSI+  AQ NHRITT+MQRRIYGHA
Sbjct: 1   MVLPLMKLGTLAVKTISKPLASQLKHQAKVHPKFRQSIINFAQRNHRITTQMQRRIYGHA 60

Query: 61  TGGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALR 120
           T  EIRPL+EEKAVQAAVDLIGEIF+F V GA V+FEVQRS+RSEARKEE RKQELE LR
Sbjct: 61  TDVEIRPLDEEKAVQAAVDLIGEIFLFGVGGAVVVFEVQRSSRSEARKEEARKQELEDLR 120

Query: 121 QRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFK 156
            +DE L +++  L+ K+EELEQLAK RGLSGIF  K
Sbjct: 121 IKDEELEKQVADLKSKLEELEQLAKARGLSGIFQLK 156

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396819|ref|NP_564311.1| Optic atrophy 3 protein (OPA3) [Arabidopsis thaliana] gi|6560770|gb|AAF16770.1|AC010155_23 F3M18.5 [Arabidopsis thaliana] gi|15724222|gb|AAL06504.1|AF412051_1 At1g28510/F3M18_5 [Arabidopsis thaliana] gi|18252247|gb|AAL62004.1| At1g28510/F3M18_5 [Arabidopsis thaliana] gi|21553821|gb|AAM62914.1| unknown [Arabidopsis thaliana] gi|332192864|gb|AEE30985.1| Optic atrophy 3 protein (OPA3) [Arabidopsis thaliana]

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 114/156 (73%), Positives = 135/156 (86%)

Query: 1   MVLPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYGHA 60
           MVLP++KLGTLA+KT+SKP+A++LK QA +HP+FRQSI+  AQ NHRITT+MQRRIYGHA
Sbjct: 1   MVLPLMKLGTLAVKTISKPLASQLKHQAKVHPKFRQSIINFAQRNHRITTQMQRRIYGHA 60

Query: 61  TGGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALR 120
           T  EIRPL+EEKAVQAAVDLIGEIF+F V GA V+FEVQRS+RSEARKEE RKQELE LR
Sbjct: 61  TDVEIRPLDEEKAVQAAVDLIGEIFLFGVGGAVVVFEVQRSSRSEARKEEARKQELEELR 120

Query: 121 QRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFK 156
            +DE L +++  L+ K+EELEQLAK RGLSGIF  K
Sbjct: 121 IKDEELEKQVADLKSKLEELEQLAKARGLSGIFQLK 156

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568367|ref|XP_002525158.1| Optic atrophy 3 protein, putative [Ricinus communis] gi|223535617|gb|EEF37285.1| Optic atrophy 3 protein, putative [Ricinus communis]

 Score =  231 bits (589), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 109/158 (68%), Positives = 135/158 (85%)

Query: 1   MVLPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYGHA 60
           M+LPVVKLGTLALKT  KP+A +LK++A +HPRFRQ I+ IAQANHR TT +QRRIYGHA
Sbjct: 1   MILPVVKLGTLALKTFCKPIANRLKKEAGLHPRFRQFIINIAQANHRFTTTVQRRIYGHA 60

Query: 61  TGGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALR 120
           T   IRPLNEEKAVQAA DL+GE+F+F VA  AV+FEVQRS++SEARKEE+R Q L+ ++
Sbjct: 61  TNVAIRPLNEEKAVQAAADLLGELFVFMVAAGAVVFEVQRSSKSEARKEEMRIQVLQEMK 120

Query: 121 QRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFKHA 158
           Q+DE LARE+ELL+QK+EE+E+LAK R L+G F+FKH 
Sbjct: 121 QKDEELAREVELLKQKLEEIEELAKGRKLAGFFNFKHG 158

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
TAIR|locus:2032548	171	AT1G28510 "AT1G28510" [Arabido	0.988	0.976	0.696	8.6e-56
TAIR|locus:2085475	194	AT3G58150 "AT3G58150" [Arabido	0.857	0.747	0.582	9.6e-41
POMBASE|SPBC1703.11	218	SPBC1703.11 "optic atrophy 3 f	0.786	0.610	0.397	3.2e-17
ZFIN|ZDB-GENE-050210-1	157	opa3 "optic atrophy 3" [Danio	0.822	0.885	0.368	2.3e-16
ASPGD|ASPL0000048919	277	AN1559 [Emericella nidulans (t	0.479	0.292	0.329	1.5e-14
CGD|CAL0004708	151	orf19.326 [Candida albicans (t	0.775	0.867	0.280	1.8e-14
UNIPROTKB|Q5AEE2	151	CaO19.326 "Putative uncharacte	0.775	0.867	0.280	1.8e-14
UNIPROTKB|Q9H6K4	179	OPA3 "Optic atrophy 3 protein"	0.792	0.748	0.345	4.9e-14
UNIPROTKB|E2RIG6	178	OPA3 "Uncharacterized protein"	0.840	0.797	0.312	1e-13
MGI|MGI:2686271	179	Opa3 "optic atrophy 3" [Mus mu	0.828	0.782	0.330	1e-13

TAIR|locus:2032548 AT1G28510 "AT1G28510" [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 117/168 (69%), Positives = 138/168 (82%)

Query:     1 MVLPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYGHA 60
             MVLP++KLGTLA+KT+SKP+A++LK QA +HP+FRQSI+  AQ NHRITT+MQRRIYGHA
Sbjct:     1 MVLPLMKLGTLAVKTISKPLASQLKHQAKVHPKFRQSIINFAQRNHRITTQMQRRIYGHA 60

Query:    61 TGGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALR 120
             T  EIRPL+EEKAVQAAVDLIGEIF+F V GA V+FEVQRS+RSEARKEE RKQELE LR
Sbjct:    61 TDVEIRPLDEEKAVQAAVDLIGEIFLFGVGGAVVVFEVQRSSRSEARKEEARKQELEELR 120

Query:   121 QRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFKHATADEAKLAKP 168
              +DE L +++  L+ K+EELEQLAK RGLSGIF  K      A   KP
Sbjct:   121 IKDEELEKQVADLKSKLEELEQLAKARGLSGIFQLKPQPGTTAS-GKP 167

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2085475 AT3G58150 "AT3G58150" [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 85/146 (58%), Positives = 117/146 (80%)

Query:     1 MVLPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYGHA 60
             MVLP++KLGTLAL+T+ KP+A +LK++A ++P+FRQ I+ IAQANHR TT++QRR  G  
Sbjct:    12 MVLPLLKLGTLALRTICKPIANQLKKEAGVNPKFRQFIINIAQANHRFTTKLQRRASGRI 71

Query:    61 TGGEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALR 120
             T   IRPLNEE+AVQAA DL+GE+F FTVAGAA+++EVQR+AR EA+KEE R+QEL   R
Sbjct:    72 TDAVIRPLNEERAVQAAADLLGELFAFTVAGAALVYEVQRNARGEAKKEEKRQQELAEFR 131

Query:   121 QRDEGLARELELLRQKIEEL-EQLAK 145
             ++ E +  E+E ++Q+   L E+L+K
Sbjct:   132 RKHEKMENEIEEMKQRCCLLHEELSK 157

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

POMBASE|SPBC1703.11 SPBC1703.11 "optic atrophy 3 family protein" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 58/146 (39%), Positives = 86/146 (58%)

Query:     6 VKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYGHATGG-- 63
             +K+G+L ++TLSKP+A  +K QA  H  FR++ +  AQ  HR   R+   I    +GG  
Sbjct:     6 LKIGSLLVRTLSKPIANTIKAQAKEHKAFRKACIEFAQWMHRAEFRITG-INRAKSGGAN 64

Query:    64 -EIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQEL-EALRQ 121
               +RPLN+ KAV A    + E FIFTVAG A++FE  R AR   RKE+ R+ E+ EA+  
Sbjct:    65 VRLRPLNDAKAVDAGATFLSETFIFTVAGGAILFETWR-AR---RKEKNRRDEVAEAIL- 119

Query:   122 RDEGLARELELLRQKIEELEQLAKQR 147
                GL  E+  + + +E+   L K++
Sbjct:   120 ---GLQHEIVRINEIMEKQFVLQKKK 142

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-050210-1 opa3 "optic atrophy 3" [Danio rerio (taxid:7955)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 52/141 (36%), Positives = 76/141 (53%)

Query:     4 PVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSI-VGIAQANHRITTRMQRRIYGHATG 62
             P+ KL  L ++ LSKPVA ++K  A     F+  I +  AQA H I  R + RI G   G
Sbjct:     7 PIAKLLYLGVRQLSKPVANRIKAGARRSEFFKNYICLPPAQAYHWIEMRTKMRIMGFR-G 65

Query:    63 GEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQR 122
               I+PLNE+ A +   +L+GE  IF + G  ++ E  R A +  RKEE   Q + +L+ +
Sbjct:    66 STIKPLNEDAAAELGAELLGEAIIFVIGGGCMVLEYSRQAANSRRKEEELAQSITSLQTQ 125

Query:   123 DEGLARELELLRQKIEELEQL 143
                LA   E L  +I E+ +L
Sbjct:   126 LGELALTTETLDAQIREVNRL 146

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0050881 "musculoskeletal movement" evidence=IMP

GO:0031413 "regulation of buoyancy" evidence=IMP

GO:0007626 "locomotory behavior" evidence=IMP

ASPGD|ASPL0000048919 AN1559 [Emericella nidulans (taxid:162425)]

 Score = 116 (45.9 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
 Identities = 27/82 (32%), Positives = 45/82 (54%)

Query:    65 IRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDE 124
             IRPL+E KA+++    I E F+F VAG+ ++FE  RS R E  + +     L  L +   
Sbjct:   114 IRPLSESKAIESGATFISETFLFLVAGSLILFESWRSRRKENNRRDDVAARLNELEET-V 172

Query:   125 GLARELELLRQKIEELEQLAKQ 146
             G+ RE  +  +K  +L   +++
Sbjct:   173 GIYREAFIALEKNGDLPPASRR 194

GO:0008150 "biological_process" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

CGD|CAL0004708 orf19.326 [Candida albicans (taxid:5476)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 37/132 (28%), Positives = 72/132 (54%)

Query:     6 VKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYGHATGGEI 65
             +K  +L ++T++KP+   +K+QA  H RFR+  +  AQ  H    +++  + G     ++
Sbjct:     6 LKFTSLLVRTIAKPIGNAIKRQAKDHERFRRLCINFAQKMHSSEIKLRMSLLGE-NKIKV 64

Query:    66 RPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEG 125
             +PLN+ KA++     I E FIF+VAG+ + +E  RS +    + +    ++  L+   E 
Sbjct:    65 KPLNDNKAIEQGATFISEFFIFSVAGSLIFYESYRSRKKATSERDALADDITLLQSEMEK 124

Query:   126 LARELELLRQKI 137
             +  +LE +  K+
Sbjct:   125 IKNKLEDINVKL 136

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5AEE2 CaO19.326 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 37/132 (28%), Positives = 72/132 (54%)

Query:     6 VKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYGHATGGEI 65
             +K  +L ++T++KP+   +K+QA  H RFR+  +  AQ  H    +++  + G     ++
Sbjct:     6 LKFTSLLVRTIAKPIGNAIKRQAKDHERFRRLCINFAQKMHSSEIKLRMSLLGE-NKIKV 64

Query:    66 RPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEG 125
             +PLN+ KA++     I E FIF+VAG+ + +E  RS +    + +    ++  L+   E 
Sbjct:    65 KPLNDNKAIEQGATFISEFFIFSVAGSLIFYESYRSRKKATSERDALADDITLLQSEMEK 124

Query:   126 LARELELLRQKI 137
             +  +LE +  K+
Sbjct:   125 IKNKLEDINVKL 136

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9H6K4 OPA3 "Optic atrophy 3 protein" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 47/136 (34%), Positives = 72/136 (52%)

Query:     4 PVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSI-VGIAQANHRITTRMQRRIYGHATG 62
             P+ KL  L ++ +SKP+A ++K+ A     F+  I +  AQ  H +  R + RI G   G
Sbjct:     7 PMAKLLYLGIRQVSKPLANRIKEAARRSEFFKTYICLPPAQLYHWVEMRTKMRIMGFR-G 65

Query:    63 GEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQR 122
               I+PLNEE A +   +L+GE  IF V G  ++ E  R    +  KEE ++    ALR  
Sbjct:    66 TVIKPLNEEAAAELGAELLGEATIFIVGGGCLVLEYWRHQAQQRHKEEEQRAAWNALRDE 125

Query:   123 DEGLARELELLRQKIE 138
                LA  LE L+ +++
Sbjct:   126 VGHLALALEALQAQVQ 141

GO:0050896 "response to stimulus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA;NAS

GO:0007601 "visual perception" evidence=IMP

UNIPROTKB|E2RIG6 OPA3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 46/147 (31%), Positives = 73/147 (49%)

Query:     4 PVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSI-VGIAQANHRITTRMQRRIYGHATG 62
             P+ KL  L ++ +SKP+A ++K+ A     F+  I +  AQ  H +  R + R+ G    
Sbjct:     7 PIAKLLYLGIRQVSKPLANRIKEAARRSEFFKTYICLPPAQLYHWVEMRAKMRLMGF-NA 65

Query:    63 GEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQR 122
               ++PLNE+ A +   +L+GE  +F VAG  ++ E  R      RKE  R+    A+R  
Sbjct:    66 AAVKPLNEDAAAELGAELLGEATVFAVAGGCLVLEFWRHQAHHRRKETARRAAWSAMRDE 125

Query:   123 DEGLARELELLRQKIEELEQLAKQRGL 149
              + LA  L  L  ++    Q   QR L
Sbjct:   126 VDHLALALAALHDQVRAAPQ---QRAL 149

GO:0007601 "visual perception" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:2686271 Opa3 "optic atrophy 3" [Mus musculus (taxid:10090)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 47/142 (33%), Positives = 73/142 (51%)

Query:     4 PVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSI-VGIAQANHRITTRMQRRIYGHATG 62
             P+ KL  L ++ +SKP+A ++K  A     F+  I +  AQ  H +  R + RI G   G
Sbjct:     7 PMAKLFYLGIRQVSKPLANRIKDAARRSEFFKTYICLPPAQLYHWVEMRTKMRIMGFR-G 65

Query:    63 GEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQR 122
               I+PLNEE A +   +L+GE  IF V G  ++ E  R    +  KEE ++    AL+  
Sbjct:    66 TTIKPLNEEAAAELGAELLGEATIFIVGGGCLVLEYWRHQTQQRNKEEEQRAAWNALQDE 125

Query:   123 DEGLARELELLRQKIEELEQLA 144
                LA  LE L+ + + +  L+
Sbjct:   126 VGRLALALEALQAQAQAMPSLS 147

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0007601 "visual perception" evidence=ISO

GO:0019216 "regulation of lipid metabolic process" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0050905 "neuromuscular process" evidence=IMP

GO:0070584 "mitochondrion morphogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1L9A2	OPA3_DANRE	No assigned EC number	0.3661	0.8284	0.8917	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0187001001 hypothetical protein (168 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	169
pfam07047	134	pfam07047, OPA3, Optic atrophy 3 protein (OPA3)	3e-54

>gnl|CDD|191675 pfam07047, OPA3, Optic atrophy 3 protein (OPA3)

 Score =  167 bits (426), Expect = 3e-54
 Identities = 67/134 (50%), Positives = 94/134 (70%), Gaps = 1/134 (0%)

Query: 4   PVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSI-VGIAQANHRITTRMQRRIYGHATG 62
           P+ KLGTLA++ +SKP+A ++K++A  +P FR+ I +  AQ  H   TR++RRIYGHAT 
Sbjct: 1   PLAKLGTLAIRQISKPIANRIKRRAKKNPFFRKYICIPPAQLYHWFETRIKRRIYGHATP 60

Query: 63  GEIRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQR 122
             I+PLNEEKAV+   DL+GE FIF+VAG  +++E QR +R EA+KEE  +QELE L  R
Sbjct: 61  VTIKPLNEEKAVELGADLLGEAFIFSVAGGLLVYEYQRQSRKEAKKEEELQQELEELEAR 120

Query: 123 DEGLARELELLRQK 136
              L  E+E  + +
Sbjct: 121 VGELELEIERQKAR 134

This family consists of several optic atrophy 3 (OPA3) proteins. OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity. Length = 134

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	169
PF07047	134	OPA3: Optic atrophy 3 protein (OPA3); InterPro: IP	100.0
KOG3335	181	consensus Predicted coiled-coil protein [General f	100.0
TIGR02209	85	ftsL_broad cell division protein FtsL. This model	95.64
PRK00888	105	ftsB cell division protein FtsB; Reviewed	95.12
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	93.74
TIGR02976	75	phageshock_pspB phage shock protein B. This model	93.24
PF10960	71	DUF2762: Protein of unknown function (DUF2762); In	92.57
PHA01750	75	hypothetical protein	91.58
PF06103	90	DUF948: Bacterial protein of unknown function (DUF	88.75
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	87.57
PF06667	75	PspB: Phage shock protein B; InterPro: IPR009554 T	87.28
PRK00888	105	ftsB cell division protein FtsB; Reviewed	86.93
PF07047	134	OPA3: Optic atrophy 3 protein (OPA3); InterPro: IP	86.86
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	86.25
PF15361	152	RIC3: Resistance to inhibitors of cholinesterase h	85.76
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	85.64
PF06295	128	DUF1043: Protein of unknown function (DUF1043); In	85.28
PF11853	489	DUF3373: Protein of unknown function (DUF3373); In	84.43
PRK04654	214	sec-independent translocase; Provisional	83.42
KOG4571	294	consensus Activating transcription factor 4 [Trans	83.39
PF04568	100	IATP: Mitochondrial ATPase inhibitor, IATP; InterP	82.7
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	82.1
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	81.2
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	80.74
smart00338	65	BRLZ basic region leucin zipper.	80.72
PF14142	46	YrzO: YrzO-like protein	80.69
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	80.63

>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans

Probab=100.00  E-value=1.5e-51  Score=319.55  Aligned_cols=133  Identities=44%  Similarity=0.720  Sum_probs=129.7

Q ss_pred             cHHHHHHHHHHHhhhHHHHHHHHHHhhChhhhHhhhchhHHHHHHHHHHhhHHhcC-CCCCCcCCCCHHHHHHHHHHHHH
Q 030907            4 PVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYGH-ATGGEIRPLNEEKAVQAAVDLIG   82 (169)
Q Consensus         4 Pl~KL~~L~iR~iSKPian~iK~~A~~~p~fR~~~i~~gq~~h~~e~rl~~~~lg~-~~~~~i~pL~Ee~Ave~GAe~lg   82 (169)
                      |++||++|+|||+|||+||+||++|++||+||++||++||.|||+|+|++|+++|. +.+.+|+||||++|||+||||||
T Consensus         1 Pl~Kl~~L~ir~iSKPia~~ik~~A~~~p~fR~~~i~~aq~~h~~e~~l~~~~~~~~~~~~~i~pL~e~~Aie~Gaell~   80 (134)
T PF07047_consen    1 PLAKLGSLFIRQISKPIANRIKRQAKKHPFFRKYCIPLAQSYHRFEVRLKMRILGLKGKPRKIRPLNEEKAIELGAELLG   80 (134)
T ss_pred             ChHHHHHHHHHHhhHHHHHHHHHHHHhCchHHHhhhHHHHHHHHHHHHHHHHHhccccCCCcCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999 67889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907           83 EIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQK  136 (169)
Q Consensus        83 E~fIF~Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~  136 (169)
                      |+|||+||+|+++|||||+++++++||+.+++++++|+.++++|+.+++++++|
T Consensus        81 E~fiF~Va~~li~~E~~Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~~~  134 (134)
T PF07047_consen   81 EAFIFSVAAGLIIYEYWRSARKEAKKEEELQERLEELEERIEELEEQVEKQQER  134 (134)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999998864

This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.

>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]

Probab=100.00  E-value=4e-47  Score=305.15  Aligned_cols=137  Identities=43%  Similarity=0.643  Sum_probs=131.9

Q ss_pred             HHHHHHhhhHHHHHHHHHHhhChhhhHh-hhchhHHHHHHHHHHhhHHhcCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 030907           10 TLALKTLSKPVAAKLKQQAAIHPRFRQS-IVGIAQANHRITTRMQRRIYGHATGGEIRPLNEEKAVQAAVDLIGEIFIFT   88 (169)
Q Consensus        10 ~L~iR~iSKPian~iK~~A~~~p~fR~~-~i~~gq~~h~~e~rl~~~~lg~~~~~~i~pL~Ee~Ave~GAe~lgE~fIF~   88 (169)
                      +|+||||||||||+||++|+.||+||++ |+++||.|||+++|++||++|.++++.|+||||++|||+|||||||+|||+
T Consensus         1 ~LairqvSKPIAn~IK~~AK~~p~FR~~~~ip~Aq~~hr~~~r~kmr~lg~g~~v~i~PLnEa~Ave~gadlLgE~~iF~   80 (181)
T KOG3335|consen    1 TLAIRQVSKPIANQIKRQAKVHPFFRTKICIPPAQLYHRFTVRLKMRALGLGGPVVIRPLNEAAAVEAGADLLGELFIFS   80 (181)
T ss_pred             CccHHHhhHHHHHHHHHHhccChHhHhhhccCHHHhhHHHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHHHhhHHhee
Confidence            4899999999999999999999999965 679999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907           89 VAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ  146 (169)
Q Consensus        89 Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~  146 (169)
                      ||+|+++|||||+++++.+||+.+++++++|+.+++.|+.++++++.++++|...+..
T Consensus        81 vggg~lv~Ey~R~~~~e~~kee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~  138 (181)
T KOG3335|consen   81 VGGGVLVFEYWRQARKERKKEEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNK  138 (181)
T ss_pred             ecceeeeehhHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999999999766654

>TIGR02209 ftsL_broad cell division protein FtsL

Probab=95.64  E-value=0.23  Score=34.76  Aligned_cols=49  Identities=22%  Similarity=0.311  Sum_probs=31.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC
Q 030907          102 ARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQR-GLSG  151 (169)
Q Consensus       102 ~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~-~~~~  151 (169)
                      .+.....-+..++++++++.+.++|..++..+.. -+.+++..+.. |+..
T Consensus        26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~-~~rIe~~Ar~~lgM~~   75 (85)
T TIGR02209        26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR-HERIEKIAKKQLGMKL   75 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHhcCCCC
Confidence            3333344445566677777777888877777765 56678888764 6543

This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=95.12  E-value=0.34  Score=36.19  Aligned_cols=51  Identities=20%  Similarity=0.259  Sum_probs=38.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCC
Q 030907          101 SARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ-RGLSG  151 (169)
Q Consensus       101 s~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~-~~~~~  151 (169)
                      +..+-..+-+..++++++++.+.+.|..+++.++..-+-+|+..+. .|+..
T Consensus        28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk   79 (105)
T PRK00888         28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMVK   79 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCC
Confidence            3444444555667788889999999999999998877888888875 56533

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=93.74  E-value=0.3  Score=33.33  Aligned_cols=41  Identities=27%  Similarity=0.499  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCC
Q 030907          110 EIRKQELEALRQRDEGLARELELLRQKIEELEQLAK-QRGLS  150 (169)
Q Consensus       110 e~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~-~~~~~  150 (169)
                      ...+.++++++.+.++|..+++.++..-+.+|+..+ ..|+.
T Consensus        27 ~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~   68 (80)
T PF04977_consen   27 AELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMV   68 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCc
Confidence            345666777778888888888888667777788887 45553

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>TIGR02976 phageshock_pspB phage shock protein B

Probab=93.24  E-value=0.33  Score=34.57  Aligned_cols=32  Identities=16%  Similarity=0.232  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 030907          120 RQRDEGLARELELLRQKIEELEQLAKQRGLSGI  152 (169)
Q Consensus       120 ~~~~~~l~~eve~l~~~i~ele~~~~~~~~~~~  152 (169)
                      ++++++|....+.+++||+.||+.+-+.+ |+|
T Consensus        41 ~~~L~~L~~~a~rm~eRI~tLE~ILd~e~-P~w   72 (75)
T TIGR02976        41 QALLQELYAKADRLEERIDTLERILDAEH-PNW   72 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCC-cCc
Confidence            35567888889999999999999998765 444

This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.

>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli

Probab=92.57  E-value=1.5  Score=30.81  Aligned_cols=21  Identities=24%  Similarity=0.344  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhHH
Q 030907           86 IFTVAGAAVIFEVQRSARSEA  106 (169)
Q Consensus        86 IF~Va~~li~~E~~Rs~~ke~  106 (169)
                      +|++...++++-..|.+++-.
T Consensus        14 ~fA~LFv~Ll~yvlK~~~~re   34 (71)
T PF10960_consen   14 IFAVLFVWLLFYVLKENKKRE   34 (71)
T ss_pred             cHHHHHHHHHHHHHHHhHHhH
Confidence            577777777776666665433

A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].

>PHA01750 hypothetical protein

Probab=91.58  E-value=3  Score=29.38  Aligned_cols=49  Identities=27%  Similarity=0.367  Sum_probs=37.6

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907           95 IFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLA  144 (169)
Q Consensus        95 ~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~  144 (169)
                      +|--.+++-+++.| +..++++++|..+++++......+++++.|+.+.+
T Consensus        24 lYlKIKq~lkdAvk-eIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~   72 (75)
T PHA01750         24 LYLKIKQALKDAVK-EIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKL   72 (75)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence            34445677777766 57788999999998888888888888888887654

>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins

Probab=88.75  E-value=6.6  Score=27.76  Aligned_cols=55  Identities=15%  Similarity=0.253  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907           86 IFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEEL  140 (169)
Q Consensus        86 IF~Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~el  140 (169)
                      |++++..++++-....-.+-.+.=++....++.++++++.+..++..+-.+.+++
T Consensus         5 I~Aiaf~vLvi~l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l   59 (90)
T PF06103_consen    5 IAAIAFAVLVIFLIKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNEL   59 (90)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            4444444444433333333322223334444445555544444444444444433

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=87.57  E-value=4.9  Score=31.05  Aligned_cols=52  Identities=25%  Similarity=0.402  Sum_probs=40.0

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907           94 VIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAK  145 (169)
Q Consensus        94 i~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~  145 (169)
                      ++|+...+...+....+....++..++.+++.+...++.++.++.++++.+.
T Consensus        39 ~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~   90 (151)
T PF11559_consen   39 CIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELA   90 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677777888887777777777778888888888888888888877777654

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences

Probab=87.28  E-value=1.9  Score=30.70  Aligned_cols=32  Identities=25%  Similarity=0.344  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 030907          120 RQRDEGLARELELLRQKIEELEQLAKQRGLSGI  152 (169)
Q Consensus       120 ~~~~~~l~~eve~l~~~i~ele~~~~~~~~~~~  152 (169)
                      ++++++|....+.++.||+.||+.+-+-+ |+|
T Consensus        41 ~~~L~~L~~~a~rm~eRI~tLE~ILdae~-P~w   72 (75)
T PF06667_consen   41 EQRLQELYEQAERMEERIETLERILDAEH-PNW   72 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCc
Confidence            45678888899999999999999997764 444

The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=86.93  E-value=5  Score=29.90  Aligned_cols=32  Identities=19%  Similarity=0.213  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907          110 EIRKQELEALRQRDEGLARELELLRQKIEELE  141 (169)
Q Consensus       110 e~~~~~le~L~~~~~~l~~eve~l~~~i~ele  141 (169)
                      .+.++++++++.++++++.+.+.|+.+|+.|.
T Consensus        30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~   61 (105)
T PRK00888         30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK   61 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34455666666777777777777777766664

>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans

Probab=86.86  E-value=11  Score=29.14  Aligned_cols=65  Identities=22%  Similarity=0.239  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907           75 QAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQ  142 (169)
Q Consensus        75 e~GAe~lgE~fIF~Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~  142 (169)
                      +...|+=+|++.=++..++...=++--..+.++|+....+   ++++++++|+.++++++.+++++++
T Consensus        69 ~~Aie~Gaell~E~fiF~Va~~li~~E~~Rs~~ke~~Ke~---~~~~~l~~L~~~i~~L~~~~~~~~~  133 (134)
T PF07047_consen   69 EKAIELGAELLGEAFIFSVAAGLIIYEYWRSARKEAKKEE---ELQERLEELEERIEELEEQVEKQQE  133 (134)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5788999999986666666666666677777777765543   5567888888888888888887653

This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=86.25  E-value=6.3  Score=28.83  Aligned_cols=28  Identities=25%  Similarity=0.496  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907          113 KQELEALRQRDEGLARELELLRQKIEEL  140 (169)
Q Consensus       113 ~~~le~L~~~~~~l~~eve~l~~~i~el  140 (169)
                      ..+++.++.+++.++.++..++.+|+++
T Consensus        76 e~~i~~l~~~~~~l~~~~~elk~~l~~~  103 (105)
T cd00632          76 ELRIKRLERQEEDLQEKLKELQEKIQQA  103 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444443

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3

Probab=85.76  E-value=0.55  Score=37.41  Aligned_cols=70  Identities=13%  Similarity=0.271  Sum_probs=36.3

Q ss_pred             HHHHHHHHH-HHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907           77 AVDLIGEIF-IFTVAGAAV-IFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ  146 (169)
Q Consensus        77 GAe~lgE~f-IF~Va~~li-~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~  146 (169)
                      +-.+.+-++ ||+||+++. +|=.+|..+++...++........-...-..-..|+..|++||+|-|+++..
T Consensus        78 ~~g~~~~imPlYtiGI~~f~lY~l~Ki~~~k~~~~~~~~~~~~~~~~~~~~~~~eL~qLq~rL~qTE~~m~k  149 (152)
T PF15361_consen   78 GKGLMGQIMPLYTIGIVLFILYTLFKIKKKKDSPRERKSSTERKGNTKRKITDYELAQLQERLAQTERAMEK  149 (152)
T ss_pred             CCchhhhHhHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            345677555 688876654 4556665444332222111110011112224456777888888888877753

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=85.64  E-value=7.6  Score=28.86  Aligned_cols=15  Identities=27%  Similarity=0.517  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHh
Q 030907           87 FTVAGAAVIFEVQRS  101 (169)
Q Consensus        87 F~Va~~li~~E~~Rs  101 (169)
                      ++++++++++=+.|+
T Consensus        16 ~~~~~~~~~~~l~~~   30 (106)
T PF10805_consen   16 FGIAGGIFWLWLRRT   30 (106)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            444455554444443

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=85.28  E-value=8.1  Score=29.62  Aligned_cols=14  Identities=29%  Similarity=0.162  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHH
Q 030907          132 LLRQKIEELEQLAK  145 (169)
Q Consensus       132 ~l~~~i~ele~~~~  145 (169)
                      .|...-+.+.+++.
T Consensus        61 ~l~~~Y~~l~~Hla   74 (128)
T PF06295_consen   61 NLTQDYQKLYQHLA   74 (128)
T ss_pred             HHHHHHHHHHHHHH
Confidence            34444455555553

>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised

Probab=84.43  E-value=1.6  Score=40.90  Aligned_cols=44  Identities=23%  Similarity=0.305  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Q 030907          113 KQELEALRQRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFK  156 (169)
Q Consensus       113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~~~~~~~~  156 (169)
                      ++++|+|++++++|+.++++++.+++..|+.....-+..-..||
T Consensus        30 ~qkie~L~kql~~Lk~q~~~l~~~v~k~e~~s~~d~lk~~~DfR   73 (489)
T PF11853_consen   30 LQKIEALKKQLEELKAQQDDLNDRVDKVEKHSAGDNLKFGGDFR   73 (489)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccchhhHhhhcCcEEEeeEEE
Confidence            33889999999999999999999999999977654444333333

This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.

>PRK04654 sec-independent translocase; Provisional

Probab=83.42  E-value=18  Score=30.65  Aligned_cols=59  Identities=22%  Similarity=0.299  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHH------------HHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907           81 IGEIFIFTVAGAAVIF------------EVQRSARS---EARKEEIRKQELEALRQRDEGLARELELLRQKIEE  139 (169)
Q Consensus        81 lgE~fIF~Va~~li~~------------E~~Rs~~k---e~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~e  139 (169)
                      ++|++|.+|.+.+++.            .+.|..|+   +.+.+-.+..++++|++.+++....+.....+++.
T Consensus         6 ~~ELLlI~VVALlV~GPerLPe~aRtlGk~irk~R~~~~~vk~El~~El~~~ELrk~l~~~~~~i~~~~~~lk~   79 (214)
T PRK04654          6 VGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQASLREAEDQLRN   79 (214)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4788888777777643            23333322   22333333445555666555555555554444443

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=83.39  E-value=4.4  Score=35.72  Aligned_cols=46  Identities=28%  Similarity=0.341  Sum_probs=34.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030907          102 ARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQR  147 (169)
Q Consensus       102 ~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~  147 (169)
                      ++|.+.+.|....+++.|+++-++|.++++.+..+|+.|.+++.++
T Consensus       243 RqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~  288 (294)
T KOG4571|consen  243 RQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV  288 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444456677888888888888888888888898888888654

>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface

Probab=82.70  E-value=8.7  Score=28.74  Aligned_cols=31  Identities=39%  Similarity=0.535  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907          114 QELEALRQRDEGLARELELLRQKIEELEQLA  144 (169)
Q Consensus       114 ~~le~L~~~~~~l~~eve~l~~~i~ele~~~  144 (169)
                      .+.|+|+.-.+.|..+++.++..|++++..+
T Consensus        69 ~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I   99 (100)
T PF04568_consen   69 KEKEQLKKLKEKLKEEIEHHRKEIDELEKHI   99 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3334444445556666677777777777654

It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=82.10  E-value=11  Score=24.37  Aligned_cols=31  Identities=45%  Similarity=0.535  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907          112 RKQELEALRQRDEGLARELELLRQKIEELEQ  142 (169)
Q Consensus       112 ~~~~le~L~~~~~~l~~eve~l~~~i~ele~  142 (169)
                      ..+....++.++..|..+...|..++..|+.
T Consensus        23 kk~~~~~le~~~~~L~~en~~L~~~i~~L~~   53 (54)
T PF07716_consen   23 KKQREEELEQEVQELEEENEQLRQEIAQLER   53 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3555667888888888888888888888864

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=81.20  E-value=13  Score=24.66  Aligned_cols=34  Identities=32%  Similarity=0.474  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907          112 RKQELEALRQRDEGLARELELLRQKIEELEQLAK  145 (169)
Q Consensus       112 ~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~  145 (169)
                      ..+.+++|+.+++.|..+...|..++..|+..+.
T Consensus        24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~   57 (64)
T PF00170_consen   24 KKQYIEELEEKVEELESENEELKKELEQLKKEIQ   57 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556677788888888888888877777776654

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=80.74  E-value=13  Score=28.76  Aligned_cols=38  Identities=24%  Similarity=0.341  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030907          110 EIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQR  147 (169)
Q Consensus       110 e~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~  147 (169)
                      +...++.+.|+.+++.|++..+.++.++++|...+..+
T Consensus        73 ~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~  110 (119)
T COG1382          73 DELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA  110 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567788899999999999999999999999988653

>smart00338 BRLZ basic region leucin zipper

Probab=80.72  E-value=14  Score=24.59  Aligned_cols=33  Identities=36%  Similarity=0.478  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907          113 KQELEALRQRDEGLARELELLRQKIEELEQLAK  145 (169)
Q Consensus       113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~  145 (169)
                      .+.+.+|+.++..|..+.+.|..++..|+....
T Consensus        25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~   57 (65)
T smart00338       25 KAEIEELERKVEQLEAENERLKKEIERLRRELE   57 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566777777777777777777777665543

>PF14142 YrzO: YrzO-like protein

Probab=80.69  E-value=7.7  Score=24.84  Aligned_cols=29  Identities=17%  Similarity=0.384  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 030907           84 IFIFTVAGAAVIFEVQRSARSEARKEEIR  112 (169)
Q Consensus        84 ~fIF~Va~~li~~E~~Rs~~ke~~Kee~~  112 (169)
                      +|.|+++.++=+.-+.|.-+|.-+...+.
T Consensus         6 lff~a~gvacelaainrngrk~ikqqael   34 (46)
T PF14142_consen    6 LFFFAAGVACELAAINRNGRKKIKQQAEL   34 (46)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            34556666666777888777654444333

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=80.63  E-value=4.9  Score=27.17  Aligned_cols=28  Identities=39%  Similarity=0.544  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907          113 KQELEALRQRDEGLARELELLRQKIEEL  140 (169)
Q Consensus       113 ~~~le~L~~~~~~l~~eve~l~~~i~el  140 (169)
                      ++++.+++.+++++..+.+.++.+++.+
T Consensus        23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l   50 (80)
T PF04977_consen   23 NQEIAELQKEIEELKKENEELKEEIERL   50 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556677777777777777777777666

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	169
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	93.11
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	92.37
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	92.17
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	91.16
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	90.28
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	89.76
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	89.61
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	88.28
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	88.23
1gmj_A	84	ATPase inhibitor; coiled-coil structure, P depende	88.13
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	86.92
3m48_A	33	General control protein GCN4; leucine zipper, synt	86.32
2hy6_A	34	General control protein GCN4; protein design, para	86.05
2wq1_A	33	General control protein GCN4; TAA, nucleus, coiled	85.9
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	85.5
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	85.43
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	85.34
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	84.96
2r2v_A	34	GCN4 leucine zipper; coiled coils, anti-parallel t	84.63
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	84.43
2bni_A	34	General control protein GCN4; four helix bundle, a	83.71
2akf_A	32	Coronin-1A; coiled coil, protein binding; 1.20A {S	82.21
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	81.86
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	81.37
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	80.56
1uo4_A	34	General control protein GCN4; four helix bundle, c	80.35
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	80.2

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=93.11  E-value=0.5  Score=33.48  Aligned_cols=47  Identities=21%  Similarity=0.322  Sum_probs=32.1

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907          100 RSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ  146 (169)
Q Consensus       100 Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~  146 (169)
                      ||+.+...++....++.+.|+.+-..|..+|+.|+.++..|..++..
T Consensus        29 rSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~   75 (87)
T 1hjb_A           29 KSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ   75 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555666666666777777777777777777777777777765

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=92.37  E-value=0.92  Score=29.91  Aligned_cols=46  Identities=22%  Similarity=0.349  Sum_probs=29.2

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907          100 RSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAK  145 (169)
Q Consensus       100 Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~  145 (169)
                      |...+...+.+...++.++|+.+..+|..+++.++.++..|.+++.
T Consensus        16 R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~   61 (63)
T 1ci6_A           16 RYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3334444445555666667777777777777777777777766654

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=92.17  E-value=0.76  Score=29.87  Aligned_cols=34  Identities=29%  Similarity=0.425  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907          111 IRKQELEALRQRDEGLARELELLRQKIEELEQLA  144 (169)
Q Consensus       111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~  144 (169)
                      ...++.+.|+.+..+|..+++.++.++..|.+.+
T Consensus        26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l   59 (61)
T 1t2k_D           26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344444555555555555566665555555544

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=91.16  E-value=0.62  Score=32.30  Aligned_cols=32  Identities=22%  Similarity=0.185  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907          114 QELEALRQRDEGLARELELLRQKIEELEQLAK  145 (169)
Q Consensus       114 ~~le~L~~~~~~l~~eve~l~~~i~ele~~~~  145 (169)
                      +.-.+++.++++|+.+...|+.+|..|+..+.
T Consensus        36 ~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~   67 (78)
T 1gu4_A           36 MRNLETQHKVLELTAENERLQKKVEQLSRELS   67 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344555666666666666666666655553

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=90.28  E-value=2  Score=28.09  Aligned_cols=28  Identities=21%  Similarity=0.300  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907          115 ELEALRQRDEGLARELELLRQKIEELEQ  142 (169)
Q Consensus       115 ~le~L~~~~~~l~~eve~l~~~i~ele~  142 (169)
                      .+++|+.+++.|+.+...|+.+|..|+.
T Consensus        24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~   51 (63)
T 2wt7_A           24 LTDTLQAETDQLEDEKSALQTEIANLLK   51 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555444443

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=89.76  E-value=0.5  Score=28.00  Aligned_cols=31  Identities=16%  Similarity=0.269  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907          115 ELEALRQRDEGLARELELLRQKIEELEQLAK  145 (169)
Q Consensus       115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~  145 (169)
                      ++.+|++++++|-.+.++++.++..|..++.
T Consensus         2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ll~   32 (34)
T 2oxj_A            2 RMXQLEXKVXELLXKNXHLEXEVXRLKXLVX   32 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            4567888899998888999988888888764

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=89.61  E-value=1.1  Score=32.60  Aligned_cols=43  Identities=28%  Similarity=0.356  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Q 030907          114 QELEALRQRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFK  156 (169)
Q Consensus       114 ~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~~~~~~~~  156 (169)
                      ++++.|+.+++.|+.+.+.|+.+++.||--+..+-+.|-||-.
T Consensus        12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~   54 (100)
T 1go4_E           12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQS   54 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCc
Confidence            3678899999999999999999999999999887788888753

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=88.28  E-value=1  Score=29.34  Aligned_cols=33  Identities=12%  Similarity=0.136  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907          113 KQELEALRQRDEGLARELELLRQKIEELEQLAK  145 (169)
Q Consensus       113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~  145 (169)
                      .+.+++|+.++++|+.+...|..++..|+..+.
T Consensus        21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~   53 (62)
T 1jnm_A           21 LERIARLEEKVKTLKAQNSELASTANMLREQVA   53 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666777777777777777777777766554

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=88.23  E-value=0.78  Score=27.13  Aligned_cols=31  Identities=10%  Similarity=0.190  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907          115 ELEALRQRDEGLARELELLRQKIEELEQLAK  145 (169)
Q Consensus       115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~  145 (169)
                      ++.+|++++++|-.+...++.++..|..++.
T Consensus         2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ll~   32 (34)
T 3c3f_A            2 RMXQIEXKLEXILSXLYHXENEXARIXKLLX   32 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            4567888888888888888888888877764

>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A

Probab=88.13  E-value=2.7  Score=29.62  Aligned_cols=46  Identities=24%  Similarity=0.306  Sum_probs=22.9

Q ss_pred             HHHHhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907           97 EVQRSARSEARKE--EIRKQELEALRQRDEGLARELELLRQKIEELEQ  142 (169)
Q Consensus        97 E~~Rs~~ke~~Ke--e~~~~~le~L~~~~~~l~~eve~l~~~i~ele~  142 (169)
                      +|.|...++..+.  +...++++.-.+++++++.+++..+.+|.+|+.
T Consensus        32 ~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~   79 (84)
T 1gmj_A           32 RYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ   79 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4555554443221  122344444555556666666666666666543

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=86.92  E-value=1.7  Score=27.97  Aligned_cols=32  Identities=22%  Similarity=0.306  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907          113 KQELEALRQRDEGLARELELLRQKIEELEQLA  144 (169)
Q Consensus       113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~  144 (169)
                      +.-+++|+.++..|+.+...|..++..|.+.+
T Consensus        21 k~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~   52 (55)
T 1dh3_A           21 KEYVKSLENRVAVLENQNKTLIEELKALKDLY   52 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35577889999999999999999998887654

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=86.32  E-value=0.74  Score=27.13  Aligned_cols=30  Identities=20%  Similarity=0.251  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907          116 LEALRQRDEGLARELELLRQKIEELEQLAK  145 (169)
Q Consensus       116 le~L~~~~~~l~~eve~l~~~i~ele~~~~  145 (169)
                      +.+|++++++|-.+...++.++..|..++.
T Consensus         2 M~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~   31 (33)
T 3m48_A            2 MAQLEAKVEELLSKNWNLENEVARLKKLVG   31 (33)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence            346778888888888888888888777664

>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A

Probab=86.05  E-value=1.3  Score=26.17  Aligned_cols=32  Identities=19%  Similarity=0.194  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907          115 ELEALRQRDEGLARELELLRQKIEELEQLAKQ  146 (169)
Q Consensus       115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~~  146 (169)
                      +..+|++++++|-.+..++..++..|..++..
T Consensus         2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ll~~   33 (34)
T 2hy6_A            2 KVKQLADAVEELASANYHLANAVARLAKAVGE   33 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence            45677888888888888888888887777643

>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...

Probab=85.90  E-value=1.1  Score=26.28  Aligned_cols=30  Identities=13%  Similarity=0.137  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907          116 LEALRQRDEGLARELELLRQKIEELEQLAK  145 (169)
Q Consensus       116 le~L~~~~~~l~~eve~l~~~i~ele~~~~  145 (169)
                      +.+|++++++|-.+...+..++..+..++.
T Consensus         2 MnQLEdKVEell~~~~~le~EV~Rl~~ll~   31 (33)
T 2wq1_A            2 MKQLEDKIEENTSKIYHNTNEIARNTKLVG   31 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence            456778888888888888888877777663

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=85.50  E-value=1.9  Score=25.83  Aligned_cols=31  Identities=23%  Similarity=0.362  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907          115 ELEALRQRDEGLARELELLRQKIEELEQLAK  145 (169)
Q Consensus       115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~  145 (169)
                      ++.+|++++++|-.+..+++.++..|...+.
T Consensus         2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~   32 (36)
T 1kd8_B            2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNA   32 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence            3556777777777777777777777776664

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=85.43  E-value=1.2  Score=26.58  Aligned_cols=30  Identities=20%  Similarity=0.274  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907          116 LEALRQRDEGLARELELLRQKIEELEQLAK  145 (169)
Q Consensus       116 le~L~~~~~~l~~eve~l~~~i~ele~~~~  145 (169)
                      +.+|++++++|..+...+..++..|+..+.
T Consensus         3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll~   32 (36)
T 1kd8_A            3 VKQLEAEVEEIESEVWHLENEVARLEKENA   32 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence            456677777777777777777777766654

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=85.34  E-value=1.4  Score=25.88  Aligned_cols=30  Identities=3%  Similarity=0.141  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907          116 LEALRQRDEGLARELELLRQKIEELEQLAK  145 (169)
Q Consensus       116 le~L~~~~~~l~~eve~l~~~i~ele~~~~  145 (169)
                      +.+|++++++|-.+...++.++..|..++.
T Consensus         2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL~   31 (33)
T 3c3g_A            2 MKXIEXKLXEIXSKXYHXENXLARIKXLLX   31 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            356778888888888888888877777764

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=84.96  E-value=6  Score=27.79  Aligned_cols=37  Identities=22%  Similarity=0.189  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907          110 EIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ  146 (169)
Q Consensus       110 e~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~  146 (169)
                      +...++-.+++.++++|+.+...|+.+|.+|+..+..
T Consensus        32 ~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~   68 (87)
T 1hjb_A           32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSRELST   68 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666778899999999999999999999988764

>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1

Probab=84.63  E-value=2.1  Score=25.32  Aligned_cols=31  Identities=16%  Similarity=0.227  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907          115 ELEALRQRDEGLARELELLRQKIEELEQLAK  145 (169)
Q Consensus       115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~  145 (169)
                      ++.+|++++++|-.+...+..++..+..++-
T Consensus         2 RMnQledKvEel~~~~~~l~nEv~Rl~~lLg   32 (34)
T 2r2v_A            2 KLKQVADKLEEVASKLYHNANELARVAKLLG   32 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence            4567788888888888888888887777764

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=84.43  E-value=3.8  Score=26.95  Aligned_cols=33  Identities=21%  Similarity=0.288  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907          113 KQELEALRQRDEGLARELELLRQKIEELEQLAK  145 (169)
Q Consensus       113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~  145 (169)
                      ++.+++|+.++++|..+...|..++..|.+.+.
T Consensus        29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~   61 (63)
T 2dgc_A           29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLVG   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            567788999999999999999999998887664

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=83.71  E-value=1.3  Score=26.16  Aligned_cols=31  Identities=6%  Similarity=0.210  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907          115 ELEALRQRDEGLARELELLRQKIEELEQLAK  145 (169)
Q Consensus       115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~  145 (169)
                      ++.+|++++++|-.+-..+..++..|..++.
T Consensus         2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~lL~   32 (34)
T 2bni_A            2 RMKQIEDKLEEILSKGHHICNELARIKKLLG   32 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             chhHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence            4456778888888888888887777776654

>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}

Probab=82.21  E-value=3.6  Score=23.64  Aligned_cols=28  Identities=18%  Similarity=0.367  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907          119 LRQRDEGLARELELLRQKIEELEQLAKQ  146 (169)
Q Consensus       119 L~~~~~~l~~eve~l~~~i~ele~~~~~  146 (169)
                      |++++..|+.-++.++.+++.||+.+.+
T Consensus         4 lee~~r~l~~ivq~lq~r~drle~tvqa   31 (32)
T 2akf_A            4 LEEDVRNLNAIVQKLQERLDRLEETVQA   31 (32)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4455666777778888888888887755

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=81.86  E-value=8.4  Score=25.02  Aligned_cols=39  Identities=21%  Similarity=0.266  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907          108 KEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ  146 (169)
Q Consensus       108 Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~  146 (169)
                      .-+...++.+.|+.+...|..++..++.++..|..++.+
T Consensus        24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~   62 (63)
T 2wt7_A           24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAA   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344567788889999999999999999999999988753

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=81.37  E-value=3.8  Score=26.20  Aligned_cols=28  Identities=18%  Similarity=0.198  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907          117 EALRQRDEGLARELELLRQKIEELEQLA  144 (169)
Q Consensus       117 e~L~~~~~~l~~eve~l~~~i~ele~~~  144 (169)
                      +.|+.+.++|..+++.+..+++++.+.+
T Consensus        22 eaLk~E~~eLk~k~~~L~~~~~el~~~l   49 (53)
T 2yy0_A           22 ELLRLELAEMKEKYEAIVEENKKLKAKL   49 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444445555555555555544433

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=80.56  E-value=12  Score=25.77  Aligned_cols=49  Identities=22%  Similarity=0.342  Sum_probs=40.9

Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907           98 VQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ  146 (169)
Q Consensus        98 ~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~  146 (169)
                      ..||..+...++....++.+.|+.+-..|..+|+.|+.++..|..++..
T Consensus        27 akrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q   75 (78)
T 1gu4_A           27 VRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466667778888888999999999999999999999999998877643

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=80.35  E-value=2  Score=25.43  Aligned_cols=30  Identities=10%  Similarity=0.346  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907          116 LEALRQRDEGLARELELLRQKIEELEQLAK  145 (169)
Q Consensus       116 le~L~~~~~~l~~eve~l~~~i~ele~~~~  145 (169)
                      +.+|++++++|-.+...++.++..|..++.
T Consensus         3 M~QLEdKVEeLl~~n~~Le~EV~RLk~LL~   32 (34)
T 1uo4_A            3 MKQIEDKGEEILSKLYHIENELARIKKLLG   32 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence            456778888888888888888877777654

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=80.20  E-value=3.4  Score=26.41  Aligned_cols=30  Identities=23%  Similarity=0.460  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907          110 EIRKQELEALRQRDEGLARELELLRQKIEE  139 (169)
Q Consensus       110 e~~~~~le~L~~~~~~l~~eve~l~~~i~e  139 (169)
                      +..+.+.++|+.++++|..+++++++++..
T Consensus        22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~~   51 (53)
T 2yy0_A           22 ELLRLELAEMKEKYEAIVEENKKLKAKLAQ   51 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            456677888999999999999999888753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00