Citrus Sinensis ID: 030949

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQVNMFGFSILFCNLFYLNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRFVIFLYYILTCILRFSVPTVI
Secondary Structure (PSIPRED)
ccEEEEEccccccccccEEEEEEEcccEEEEEcHHHHHHHHccccccccHHHHHHHHHHcccccEEccccEEHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccccccccccEEEEEccHHEHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHcHHHHccccccccccccHHHHHHccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mrlekcwfcsstvypghgiqfvrNDAKIFRFCRskchknfkmkrnprkvkwtkayrrlhgkdmtqvnMFGFSILFCNLFYLNMFMRISgdlffsfpfsyrqdstfeferkrnrperydRNLAENTLKAIKKIDKIRVAREERHHKLRFVIFLYYILTCILRFSVPTVI
Flexible Loop (DISEMBL)
mrlekcwfcsstvypghgiqfvrNDAKIFRFCRSkchknfkmkrnprkvkwtkayrRLHGKDMTQVNMFGFSILFCNLFYLNMFMRISGDLFFSFPFSYRQDstfeferkrnrperydrnlaentlkaikkidKIRVAREERHHKLRFVIFLYYILTCILRFSVPTVI
Low Complexity Region (SEG)
MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQVNMFGFSILFCNLFYLNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRFVIFLYYILTCILRFSVPTVI
Disordered region (IsUnstruct)
****KCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQVNMFGFSILFCNLFYLNMFMRISGDLFFSFPFSYRQDSTFE**************LAENTLKAIKKIDKIRVAREERHHKLRFVIFLYYILTCILRFSVP***
Disordered Region (DISOPRED)
MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRL********************FYLNM****************************NRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRFVIFLYYILTCILRFSVPTVI
Disordered Region (DISEMBL)
MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQVNMFGFSILFCNLFYLNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRFVIFLYYILTCILRFSVPTVI
Disordered Region (DISPRO)
*RLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQVNMFGFSILFCNLFYLNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRFVIFLYYILTCILRFSVPTVI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQVNMFGFSILFCNLFYLNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRFVIFLYYILTCILRFSVPTVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
O22165	159	Probable ribosome biogene	yes	no	0.636	0.672	0.650	7e-47
Q86B05	164	Probable ribosome biogene	yes	no	0.666	0.682	0.486	4e-33
Q10353	192	Ribosome biogenesis prote	yes	no	0.678	0.593	0.442	1e-30
Q99L28	163	Probable ribosome biogene	yes	no	0.619	0.638	0.442	2e-29
Q3SZ12	163	Probable ribosome biogene	yes	no	0.630	0.650	0.436	2e-29
Q9UHA3	163	Probable ribosome biogene	yes	no	0.630	0.650	0.436	2e-29
Q6P6G7	163	Probable ribosome biogene	yes	no	0.619	0.638	0.442	3e-29
Q6FPU0	197	Ribosome biogenesis prote	yes	no	0.666	0.568	0.466	3e-29
Q7ZTZ2	161	Probable ribosome biogene	yes	no	0.630	0.658	0.443	3e-29
Q5RF04	163	Probable ribosome biogene	yes	no	0.630	0.650	0.429	6e-29

>sp|O22165|RLP24_ARATH Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana GN=At2g44860 PE=2 SV=1

 Score =  186 bits (471), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 93/143 (65%), Positives = 100/143 (69%), Gaps = 36/143 (25%)

Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSST+YPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 61  KDMTQVNMFGFSILFCNLFYLNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRN 120
           KDMT                                    +D+TFEFE+KRNRPERYDRN
Sbjct: 61  KDMT------------------------------------KDTTFEFEKKRNRPERYDRN 84

Query: 121 LAENTLKAIKKIDKIRVAREERH 143
           + ENTL AIKKI KIR ARE +H
Sbjct: 85  VTENTLMAIKKIAKIRTAREAKH 107

Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of NOG1 to pre-60S particles.
Arabidopsis thaliana (taxid: 3702)

>sp|Q86B05|RLP24_DICDI Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum GN=rlp24 PE=2 SV=1

 Score =  140 bits (353), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 72/148 (48%), Positives = 90/148 (60%), Gaps = 36/148 (24%)

Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS  VYPGHG+ FVRND K FRFCRSKCHKNFK+KRNPRK +WTKA+R+L+G
Sbjct: 1   MRIEKCYFCSGPVYPGHGVMFVRNDCKQFRFCRSKCHKNFKLKRNPRKTRWTKAFRKLNG 60

Query: 61  KDMTQVNMFGFSILFCNLFYLNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRN 120
           K+MT                                     D T EFE+KRNRP +YDR 
Sbjct: 61  KEMT------------------------------------VDKTLEFEKKRNRPVKYDRE 84

Query: 121 LAENTLKAIKKIDKIRVAREERHHKLRF 148
           L  NT+ A+ ++ KI+  RE+  +K R 
Sbjct: 85  LINNTIIAMARVQKIKERREKTFYKNRM 112

Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of GTPBP4/NOG1 to pre-60S particles.

Dictyostelium discoideum (taxid: 44689)

>sp|Q10353|RLP24_SCHPO Ribosome biogenesis protein rlp24 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rlp24 PE=3 SV=1

 Score =  132 bits (331), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/149 (44%), Positives = 81/149 (54%), Gaps = 35/149 (23%)

Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+  C+FCS  VYPGHGI FVRND+K+FRFCRSKCHKNFKMKRNPRKV WTKAYR+ HG
Sbjct: 1   MRVHTCYFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKAHG 60

Query: 61  KDMTQVNMFGFSILFCNLFYLNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRN 120
           K+M        +                                     +RN P RYDRN
Sbjct: 61  KEMVYDTALAVTAA-----------------------------------RRNVPVRYDRN 85

Query: 121 LAENTLKAIKKIDKIRVAREERHHKLRFV 149
           +   TL A+K++ ++   RE   +K R  
Sbjct: 86  VIATTLNAMKRVSQVHAKRERLFYKKRLA 114

Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of nog1 to pre-60S particles.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q99L28|RLP24_MOUSE Probable ribosome biogenesis protein RLP24 OS=Mus musculus GN=Rsl24d1 PE=2 SV=1

 Score =  128 bits (321), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/140 (44%), Positives = 86/140 (61%), Gaps = 36/140 (25%)

Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS  +YPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTQVNMFGFSILFCNLFYLNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRN 120
           K++T                                     D++FEFE++RN P +Y R 
Sbjct: 61  KELT------------------------------------VDNSFEFEKRRNEPVKYQRE 84

Query: 121 LAENTLKAIKKIDKIRVARE 140
           L   T+ A+K++++I+  R+
Sbjct: 85  LWNKTIDAMKRVEEIKQKRQ 104

Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of GTPBP4/NOG1 to pre-60S particles.

Mus musculus (taxid: 10090)

>sp|Q3SZ12|RLP24_BOVIN Probable ribosome biogenesis protein RLP24 OS=Bos taurus GN=RSL24D1 PE=2 SV=1

 Score =  128 bits (321), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/142 (43%), Positives = 87/142 (61%), Gaps = 36/142 (25%)

Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS  +YPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTQVNMFGFSILFCNLFYLNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRN 120
           K++T                                     D++FEFE++RN P +Y R 
Sbjct: 61  KELT------------------------------------VDNSFEFEKRRNEPVKYQRE 84

Query: 121 LAENTLKAIKKIDKIRVAREER 142
           L   T+ A+K++++I+  R+ +
Sbjct: 85  LWNKTIDAMKRVEEIKQKRQAK 106

Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of GTPBP4/NOG1 to pre-60S particles.

Bos taurus (taxid: 9913)

>sp|Q9UHA3|RLP24_HUMAN Probable ribosome biogenesis protein RLP24 OS=Homo sapiens GN=RSL24D1 PE=1 SV=1

 Score =  127 bits (320), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/142 (43%), Positives = 87/142 (61%), Gaps = 36/142 (25%)

Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS  +YPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTQVNMFGFSILFCNLFYLNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRN 120
           K++T                                     D++FEFE++RN P +Y R 
Sbjct: 61  KELT------------------------------------VDNSFEFEKRRNEPIKYQRE 84

Query: 121 LAENTLKAIKKIDKIRVAREER 142
           L   T+ A+K++++I+  R+ +
Sbjct: 85  LWNKTIDAMKRVEEIKQKRQAK 106

Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of GTPBP4/NOG1 to pre-60S particles.

Homo sapiens (taxid: 9606)

>sp|Q6P6G7|RLP24_RAT Probable ribosome biogenesis protein RLP24 OS=Rattus norvegicus GN=Rsl24d1 PE=2 SV=1

 Score =  127 bits (320), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/140 (44%), Positives = 86/140 (61%), Gaps = 36/140 (25%)

Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS  +YPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTQVNMFGFSILFCNLFYLNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRN 120
           K++T                                     D++FEFE++RN P +Y R 
Sbjct: 61  KELT------------------------------------VDNSFEFEKRRNEPVKYQRE 84

Query: 121 LAENTLKAIKKIDKIRVARE 140
           L   T+ A+K++++I+  R+
Sbjct: 85  LWNKTIDAMKRVEEIKQRRQ 104

Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of GTPBP4/NOG1 to pre-60S particles.

Rattus norvegicus (taxid: 10116)

>sp|Q6FPU0|RLP24_CANGA Ribosome biogenesis protein RLP24 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RLP24 PE=3 SV=1

 Score =  127 bits (319), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/148 (46%), Positives = 85/148 (57%), Gaps = 36/148 (24%)

Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+ +C FCSS VYPGHGI FVRNDAK FRFCRSKCHKNFK +RNPRK+KWTKA+R+  G
Sbjct: 1   MRIYQCHFCSSPVYPGHGIMFVRNDAKEFRFCRSKCHKNFKQRRNPRKLKWTKAFRKAAG 60

Query: 61  KDMTQVNMFGFSILFCNLFYLNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRN 120
           K++                                      DST  F ++RN P RY+R 
Sbjct: 61  KELA------------------------------------VDSTLTFAQRRNVPVRYNRE 84

Query: 121 LAENTLKAIKKIDKIRVAREERHHKLRF 148
           L   TLKA+ +I++IR  RE   +K R 
Sbjct: 85  LVATTLKAMSRIEEIRQKRERAFYKNRM 112

Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of NOG1 to pre-60S particles.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|Q7ZTZ2|RLP24_DANRE Probable ribosome biogenesis protein RLP24 OS=Danio rerio GN=rsl24d1 PE=2 SV=1

 Score =  127 bits (319), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/142 (44%), Positives = 87/142 (61%), Gaps = 36/142 (25%)

Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS+ VYPGHG+ FVRND K+FRFCRSKCHKNFK KRNPRK +WTKA+R+  G
Sbjct: 1   MRIEKCYFCSAPVYPGHGMMFVRNDCKVFRFCRSKCHKNFKKKRNPRKTRWTKAFRKSAG 60

Query: 61  KDMTQVNMFGFSILFCNLFYLNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRN 120
           K++T                                     D++ EFE++RN P +Y+R 
Sbjct: 61  KELT------------------------------------VDNSLEFEKRRNTPVKYNRE 84

Query: 121 LAENTLKAIKKIDKIRVAREER 142
           L   T++A++K++ I+  R+ R
Sbjct: 85  LWSKTVEAMRKVESIKHKRQAR 106

Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of GTPBP4/NOG1 to pre-60S particles.

Danio rerio (taxid: 7955)

>sp|Q5RF04|RLP24_PONAB Probable ribosome biogenesis protein RLP24 OS=Pongo abelii GN=RSL24D1 PE=2 SV=1

 Score =  126 bits (317), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 61/142 (42%), Positives = 87/142 (61%), Gaps = 36/142 (25%)

Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS  +YPGHG+ FVRND K+FRFC+SKCHKNFK +RNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKRRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTQVNMFGFSILFCNLFYLNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRN 120
           K++T                                     D++FEFE++RN P +Y R 
Sbjct: 61  KELT------------------------------------VDNSFEFEKRRNEPIKYQRE 84

Query: 121 LAENTLKAIKKIDKIRVAREER 142
           L   T+ A+K++++I+  R+ +
Sbjct: 85  LWNKTIDAMKRVEEIKQKRQAK 106

Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of GTPBP4/NOG1 to pre-60S particles.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
147803507	1073	hypothetical protein VITISV_033681 [Viti	0.660	0.103	0.721	2e-57
225436335	168	PREDICTED: probable ribosome biogenesis	0.666	0.666	0.716	7e-53
225440980	168	PREDICTED: probable ribosome biogenesis	0.666	0.666	0.722	1e-52
356565687	168	PREDICTED: probable ribosome biogenesis	0.666	0.666	0.716	4e-52
356539307	169	PREDICTED: probable ribosome biogenesis	0.666	0.662	0.709	1e-51
356542711	168	PREDICTED: probable ribosome biogenesis	0.666	0.666	0.702	1e-51
351734528	168	uncharacterized protein LOC100306000 [Gl	0.666	0.666	0.702	2e-51
356534538	174	PREDICTED: LOW QUALITY PROTEIN: probable	0.648	0.626	0.710	4e-51
224103027	168	predicted protein [Populus trichocarpa]	0.678	0.678	0.68	2e-49
224132060	168	predicted protein [Populus trichocarpa]	0.678	0.678	0.673	5e-49

>gi|147803507|emb|CAN68722.1| hypothetical protein VITISV_033681 [Vitis vinifera]

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 106/147 (72%), Positives = 108/147 (73%), Gaps = 36/147 (24%)

Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 57  MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 116

Query: 61  KDMTQVNMFGFSILFCNLFYLNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRN 120
           KDMT                                    QDSTFEFERKRNRPERYDRN
Sbjct: 117 KDMT------------------------------------QDSTFEFERKRNRPERYDRN 140

Query: 121 LAENTLKAIKKIDKIRVAREERHHKLR 147
           +AENTLKAIKKIDK+RV RE RHH LR
Sbjct: 141 VAENTLKAIKKIDKVRVDREARHHALR 167

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436335|ref|XP_002268489.1| PREDICTED: probable ribosome biogenesis protein RLP24 [Vitis vinifera] gi|297734845|emb|CBI17079.3| unnamed protein product [Vitis vinifera]

 Score =  211 bits (538), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 106/148 (71%), Positives = 108/148 (72%), Gaps = 36/148 (24%)

Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTQVNMFGFSILFCNLFYLNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRN 120
           KDMT                                    QDSTFEFERKRNRPERYDRN
Sbjct: 61  KDMT------------------------------------QDSTFEFERKRNRPERYDRN 84

Query: 121 LAENTLKAIKKIDKIRVAREERHHKLRF 148
           +AENTLKAIKKIDK+RV RE RHH LR 
Sbjct: 85  VAENTLKAIKKIDKVRVDREARHHALRM 112

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440980|ref|XP_002283418.1| PREDICTED: probable ribosome biogenesis protein RLP24 [Vitis vinifera] gi|297740070|emb|CBI30252.3| unnamed protein product [Vitis vinifera]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/148 (72%), Positives = 108/148 (72%), Gaps = 36/148 (24%)

Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTQVNMFGFSILFCNLFYLNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRN 120
           KDMT                                    QDSTFEFERKRNRPERYDRN
Sbjct: 61  KDMT------------------------------------QDSTFEFERKRNRPERYDRN 84

Query: 121 LAENTLKAIKKIDKIRVAREERHHKLRF 148
           LAENTLKAIKKIDK+RV RE RHH LR 
Sbjct: 85  LAENTLKAIKKIDKVRVDREARHHALRM 112

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565687|ref|XP_003551069.1| PREDICTED: probable ribosome biogenesis protein RLP24-like [Glycine max]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 106/148 (71%), Positives = 107/148 (72%), Gaps = 36/148 (24%)

Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRR+HG
Sbjct: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHG 60

Query: 61  KDMTQVNMFGFSILFCNLFYLNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRN 120
           KDMT                                    QDSTFEFERKRNRPERYDRN
Sbjct: 61  KDMT------------------------------------QDSTFEFERKRNRPERYDRN 84

Query: 121 LAENTLKAIKKIDKIRVAREERHHKLRF 148
           LAEN LKAI KIDKIRV REERHHK R 
Sbjct: 85  LAENVLKAIPKIDKIRVTREERHHKNRM 112

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539307|ref|XP_003538140.1| PREDICTED: probable ribosome biogenesis protein RLP24-like [Glycine max]

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 105/148 (70%), Positives = 107/148 (72%), Gaps = 36/148 (24%)

Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSST YPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRR+HG
Sbjct: 1   MRLEKCWFCSSTTYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHG 60

Query: 61  KDMTQVNMFGFSILFCNLFYLNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRN 120
           KDMT                                    QDSTFEFERKRNRPERYDRN
Sbjct: 61  KDMT------------------------------------QDSTFEFERKRNRPERYDRN 84

Query: 121 LAENTLKAIKKIDKIRVAREERHHKLRF 148
           LAEN LKAI KIDKIRVAREE+HHK R 
Sbjct: 85  LAENVLKAIPKIDKIRVAREEKHHKNRM 112

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542711|ref|XP_003539809.1| PREDICTED: probable ribosome biogenesis protein RLP24-like [Glycine max]

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 104/148 (70%), Positives = 107/148 (72%), Gaps = 36/148 (24%)

Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSST+YPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRR+HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHG 60

Query: 61  KDMTQVNMFGFSILFCNLFYLNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRN 120
           KDMT                                    QDSTFEFERKRNRPERYDRN
Sbjct: 61  KDMT------------------------------------QDSTFEFERKRNRPERYDRN 84

Query: 121 LAENTLKAIKKIDKIRVAREERHHKLRF 148
           LAEN LKAI KIDKIRV REE+HHK R 
Sbjct: 85  LAENVLKAIPKIDKIRVTREEKHHKNRM 112

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351734528|ref|NP_001236121.1| uncharacterized protein LOC100306000 [Glycine max] gi|255627233|gb|ACU13961.1| unknown [Glycine max]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/148 (70%), Positives = 107/148 (72%), Gaps = 36/148 (24%)

Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSST+YPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRR+HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHG 60

Query: 61  KDMTQVNMFGFSILFCNLFYLNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRN 120
           KDMT                                    QDSTFEFERKRNRPERYDRN
Sbjct: 61  KDMT------------------------------------QDSTFEFERKRNRPERYDRN 84

Query: 121 LAENTLKAIKKIDKIRVAREERHHKLRF 148
           LAEN LK I KIDKIRV+REERHHK R 
Sbjct: 85  LAENVLKVIPKIDKIRVSREERHHKNRM 112

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534538|ref|XP_003535810.1| PREDICTED: LOW QUALITY PROTEIN: probable ribosome biogenesis protein RLP24-like [Glycine max]

 Score =  206 bits (523), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 103/145 (71%), Positives = 106/145 (73%), Gaps = 36/145 (24%)

Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSST+YPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR +HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRXVHG 60

Query: 61  KDMTQVNMFGFSILFCNLFYLNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRN 120
           KDMT                                    QDSTFEFERKRNRPERYDRN
Sbjct: 61  KDMT------------------------------------QDSTFEFERKRNRPERYDRN 84

Query: 121 LAENTLKAIKKIDKIRVAREERHHK 145
           LAEN LKAI KIDKIRV+REERHHK
Sbjct: 85  LAENVLKAIPKIDKIRVSREERHHK 109

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103027|ref|XP_002312895.1| predicted protein [Populus trichocarpa] gi|118482826|gb|ABK93329.1| unknown [Populus trichocarpa] gi|222849303|gb|EEE86850.1| predicted protein [Populus trichocarpa]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 102/150 (68%), Positives = 105/150 (70%), Gaps = 36/150 (24%)

Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTQVNMFGFSILFCNLFYLNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRN 120
           KDMT                                    QDSTFEFERKRNRPERYDRN
Sbjct: 61  KDMT------------------------------------QDSTFEFERKRNRPERYDRN 84

Query: 121 LAENTLKAIKKIDKIRVAREERHHKLRFVI 150
           LAENTLKAIKKIDK+R  R   H + R  +
Sbjct: 85  LAENTLKAIKKIDKVRSDRAANHIEKRLKV 114

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132060|ref|XP_002328175.1| predicted protein [Populus trichocarpa] gi|222837690|gb|EEE76055.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (505), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 101/150 (67%), Positives = 105/150 (70%), Gaps = 36/150 (24%)

Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTQVNMFGFSILFCNLFYLNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRN 120
           KDMT                                    QD+TFEFERKRNRPERYDRN
Sbjct: 61  KDMT------------------------------------QDTTFEFERKRNRPERYDRN 84

Query: 121 LAENTLKAIKKIDKIRVAREERHHKLRFVI 150
           LAENTLKAIKKIDK+R  R   H + R  +
Sbjct: 85  LAENTLKAIKKIDKVRSDRAASHIEKRLKV 114

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
TAIR|locus:2054982	159	AT2G44860 [Arabidopsis thalian	0.422	0.446	0.873	1.6e-49
DICTYBASE|DDB_G0272789	164	rlp24 "ribosomal protein L24-l	0.380	0.390	0.765	5.7e-38
UNIPROTKB|E1BV86	163	LOC768911 "Uncharacterized pro	0.422	0.435	0.690	5.7e-36
UNIPROTKB|Q3SZ12	163	RSL24D1 "Probable ribosome bio	0.422	0.435	0.690	1.5e-35
UNIPROTKB|E2QUH4	163	RSL24D1 "Uncharacterized prote	0.422	0.435	0.690	1.5e-35
UNIPROTKB|F1RZD9	163	RSL24D1 "Uncharacterized prote	0.422	0.435	0.690	1.5e-35
MGI|MGI:2681840	163	Rsl24d1 "ribosomal L24 domain	0.422	0.435	0.690	1.5e-35
RGD|1309784	163	Rsl24d1 "ribosomal L24 domain	0.422	0.435	0.690	1.5e-35
UNIPROTKB|Q9UHA3	163	RSL24D1 "Probable ribosome bio	0.422	0.435	0.690	1.9e-35
ZFIN|ZDB-GENE-040426-1925	161	rsl24d1 "ribosomal L24 domain	0.422	0.440	0.690	1.7e-34

TAIR|locus:2054982 AT2G44860 [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
 Identities = 62/71 (87%), Positives = 65/71 (91%)

Query:     1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
             MRLEKCWFCSST+YPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct:     1 MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query:    61 KDMTQVNMFGF 71
             KDMT+   F F
Sbjct:    61 KDMTKDTTFEF 71

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

DICTYBASE|DDB_G0272789 rlp24 "ribosomal protein L24-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 300 (110.7 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
 Identities = 49/64 (76%), Positives = 58/64 (90%)

Query:     1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
             MR+EKC+FCS  VYPGHG+ FVRND K FRFCRSKCHKNFK+KRNPRK +WTKA+R+L+G
Sbjct:     1 MRIEKCYFCSGPVYPGHGVMFVRNDCKQFRFCRSKCHKNFKLKRNPRKTRWTKAFRKLNG 60

Query:    61 KDMT 64
             K+MT
Sbjct:    61 KEMT 64

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0042273 "ribosomal large subunit biogenesis" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|E1BV86 LOC768911 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 302 (111.4 bits), Expect = 5.7e-36, Sum P(2) = 5.7e-36
 Identities = 49/71 (69%), Positives = 60/71 (84%)

Query:     1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
             MR+EKC+FCS  +YPGHG+ FVRND KIFRFC+SKCHKNFK KRNPRK++WTKA+R+  G
Sbjct:     1 MRIEKCYFCSGPIYPGHGVMFVRNDCKIFRFCKSKCHKNFKKKRNPRKIRWTKAFRKAAG 60

Query:    61 KDMTQVNMFGF 71
             K++T  N F F
Sbjct:    61 KELTVDNSFEF 71

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|Q3SZ12 RSL24D1 "Probable ribosome biogenesis protein RLP24" [Bos taurus (taxid:9913)]

 Score = 300 (110.7 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
 Identities = 49/71 (69%), Positives = 60/71 (84%)

Query:     1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
             MR+EKC+FCS  +YPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct:     1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query:    61 KDMTQVNMFGF 71
             K++T  N F F
Sbjct:    61 KELTVDNSFEF 71

GO:0005730 "nucleolus" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|E2QUH4 RSL24D1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 300 (110.7 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
 Identities = 49/71 (69%), Positives = 60/71 (84%)

Query:     1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
             MR+EKC+FCS  +YPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct:     1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query:    61 KDMTQVNMFGF 71
             K++T  N F F
Sbjct:    61 KELTVDNSFEF 71

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|F1RZD9 RSL24D1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 300 (110.7 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
 Identities = 49/71 (69%), Positives = 60/71 (84%)

Query:     1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
             MR+EKC+FCS  +YPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct:     1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query:    61 KDMTQVNMFGF 71
             K++T  N F F
Sbjct:    61 KELTVDNSFEF 71

GO:0042254 "ribosome biogenesis" evidence=IEA

MGI|MGI:2681840 Rsl24d1 "ribosomal L24 domain containing 1" [Mus musculus (taxid:10090)]

 Score = 300 (110.7 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
 Identities = 49/71 (69%), Positives = 60/71 (84%)

Query:     1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
             MR+EKC+FCS  +YPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct:     1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query:    61 KDMTQVNMFGF 71
             K++T  N F F
Sbjct:    61 KELTVDNSFEF 71

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0042254 "ribosome biogenesis" evidence=IEA

RGD|1309784 Rsl24d1 "ribosomal L24 domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 300 (110.7 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
 Identities = 49/71 (69%), Positives = 60/71 (84%)

Query:     1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
             MR+EKC+FCS  +YPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct:     1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query:    61 KDMTQVNMFGF 71
             K++T  N F F
Sbjct:    61 KELTVDNSFEF 71

GO:0005730 "nucleolus" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|Q9UHA3 RSL24D1 "Probable ribosome biogenesis protein RLP24" [Homo sapiens (taxid:9606)]

 Score = 300 (110.7 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
 Identities = 49/71 (69%), Positives = 60/71 (84%)

Query:     1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
             MR+EKC+FCS  +YPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct:     1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query:    61 KDMTQVNMFGF 71
             K++T  N F F
Sbjct:    61 KELTVDNSFEF 71

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

ZFIN|ZDB-GENE-040426-1925 rsl24d1 "ribosomal L24 domain containing 1" [Danio rerio (taxid:7955)]

 Score = 294 (108.6 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
 Identities = 49/71 (69%), Positives = 59/71 (83%)

Query:     1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
             MR+EKC+FCS+ VYPGHG+ FVRND K+FRFCRSKCHKNFK KRNPRK +WTKA+R+  G
Sbjct:     1 MRIEKCYFCSAPVYPGHGMMFVRNDCKVFRFCRSKCHKNFKKKRNPRKTRWTKAFRKSAG 60

Query:    61 KDMTQVNMFGF 71
             K++T  N   F
Sbjct:    61 KELTVDNSLEF 71

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O22165	RLP24_ARATH	No assigned EC number	0.6503	0.6369	0.6729	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00021667001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (168 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00025456001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (65 aa)	•		•	•			•		0.981
	GSVIVG00038765001	SubName- Full=Chromosome chr2 scaffold_97, whole genome shotgun sequence; (65 aa)	•		•	•			•		0.968
	GSVIVG00018373001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (142 aa)	•			•	•		•		0.962
	GSVIVG00016877001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (144 aa)	•			•	•		•		0.950
	GSVIVG00002292001	SubName- Full=Chromosome undetermined scaffold_129, whole genome shotgun sequence; (797 aa)	•			•			•		0.949
	Ndpk	RecName- Full=Nucleoside diphosphate kinase; EC=2.7.4.6; (148 aa)	•			•			•		0.919
	GSVIVG00019030001	SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (103 aa)				•	•		•		0.912
	GSVIVG00031140001	SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (234 aa)				•			•		0.901
	GSVIVG00021307001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)				•			•		0.889
	GSVIVG00017864001	RecName- Full=Ribosomal protein L19; (183 aa)				•	•		•		0.870

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	168
COG2075	66	COG2075, RPL24A, Ribosomal protein L24E [Translati	1e-29
pfam01246	71	pfam01246, Ribosomal_L24e, Ribosomal protein L24e	2e-29
cd00472	54	cd00472, Ribosomal_L24e_L24, Ribosomal protein L24	8e-29
PRK00807	52	PRK00807, PRK00807, 50S ribosomal protein L24e; Va	2e-18
PRK14891	131	PRK14891, PRK14891, 50S ribosomal protein L24e/unk	7e-17
PTZ00033	125	PTZ00033, PTZ00033, 60S ribosomal protein L24; Pro	7e-10
smart00746	39	smart00746, TRASH, metallochaperone-like domain	6e-08

>gnl|CDD|224986 COG2075, RPL24A, Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]

 Score =  102 bits (257), Expect = 1e-29
 Identities = 35/66 (53%), Positives = 47/66 (71%)

Query: 1  MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
          M++  C FC   + PG GI +VRND K+ RFC SKC K FK+ RNPRK+KWTK YR++H 
Sbjct: 1  MKVRVCSFCGKKIEPGTGIMYVRNDGKVLRFCSSKCEKLFKLGRNPRKLKWTKKYRKMHK 60

Query: 61 KDMTQV 66
          K++ + 
Sbjct: 61 KEIKEE 66

Length = 66

>gnl|CDD|110260 pfam01246, Ribosomal_L24e, Ribosomal protein L24e

 Score =  102 bits (256), Expect = 2e-29
 Identities = 39/65 (60%), Positives = 47/65 (72%)

Query: 1  MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
          M++E C F    +YPGHGI FVR D+K+FRFC SKC KNF MKRNPRK+ WTK YR+ H 
Sbjct: 1  MKVELCSFSGYKIYPGHGIMFVRKDSKVFRFCSSKCEKNFHMKRNPRKLAWTKLYRKQHK 60

Query: 61 KDMTQ 65
          K   +
Sbjct: 61 KGEAE 65

Length = 71

>gnl|CDD|100103 cd00472, Ribosomal_L24e_L24, Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24)

 Score =  100 bits (251), Expect = 8e-29
 Identities = 36/54 (66%), Positives = 41/54 (75%)

Query: 1  MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA 54
          M+ EKC FC   +YPGHG  +VRND K+FRFC SKC KNF  KRNPRK+KWT A
Sbjct: 1  MKTEKCSFCGYKIYPGHGKMYVRNDGKVFRFCSSKCEKNFLRKRNPRKLKWTVA 54

L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor binding site. L24e/L24 appears to play a role in the kinetics of peptide synthesis, and may be involved in interactions between the large and small subunits, either directly or through other factors. In mouse, a deletion mutation in L24 has been identified as the cause for the belly spot and tail (Bst) mutation that results in disrupted pigmentation, somitogenesis and retinal cell fate determination. L24 may be an important protein in eukaryotic reproduction: in shrimp, L24 expression is elevated in the ovary, suggesting a role in oogenesis, and in Arabidopsis, L24 has been proposed to have a specific function in gynoecium development. No protein with sequence or structural homology to L24e/L24 has been identified in bacteria, but a functionally equivalent protein may exist. Bacterial L19 forms an interprotein beta sheet with L14 that is similar to the L24e/L14 interprotein beta sheet observed in the archaeal L24e structures. Some eukaryotic L24 proteins were initially identified as L30, and this alignment model contains several sequences called L30. Length = 54

>gnl|CDD|179131 PRK00807, PRK00807, 50S ribosomal protein L24e; Validated

 Score = 73.9 bits (182), Expect = 2e-18
 Identities = 26/50 (52%), Positives = 32/50 (64%)

Query: 5  KCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA 54
           C FC   + PG G  +V+ D  I  FC SKC KN+K+ R PRK+KWTKA
Sbjct: 3  TCSFCGKEIEPGTGKMYVKKDGTILYFCSSKCEKNYKLGRVPRKLKWTKA 52

Length = 52

>gnl|CDD|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain fusion protein; Provisional

 Score = 72.3 bits (177), Expect = 7e-17
 Identities = 21/59 (35%), Positives = 29/59 (49%)

Query: 2  RLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
              C +    + PG G  FVR D  +  F  SKC KN+ + R  R ++WT+A R   G
Sbjct: 3  ETRTCDYTGEEIEPGTGTMFVRKDGTVLHFVDSKCEKNYDLGREARDLEWTEAGRAEKG 61

Length = 131

>gnl|CDD|140068 PTZ00033, PTZ00033, 60S ribosomal protein L24; Provisional

 Score = 53.5 bits (128), Expect = 7e-10
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 1  MRLEKCWFCSSTVYPGHGIQFV----RNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR 56
          MR   C F    V+PGHG ++V     +   +  F R KC   +  K+NPR + WT+ YR
Sbjct: 1  MRTIACEFSHFAVHPGHGRRYVPFAFLSTKPVLTFLRPKCFALYMRKKNPRFLPWTRTYR 60

Query: 57 RLHGKDMTQ 65
          R++ K  T 
Sbjct: 61 RINRKTTTD 69

Length = 125

>gnl|CDD|214799 smart00746, TRASH, metallochaperone-like domain

 Score = 46.2 bits (110), Expect = 6e-08
 Identities = 17/39 (43%), Positives = 20/39 (51%)

Query: 6  CWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKR 44
          C FC   +Y       V ND K++ FC SKC   FK KR
Sbjct: 1  CSFCGKDIYNPGTGIMVVNDGKVYYFCSSKCLSKFKKKR 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
PTZ00033	125	60S ribosomal protein L24; Provisional	100.0
KOG1723	162	consensus 60s ribosomal protein L30 isolog [Transl	100.0
KOG1722	155	consensus 60s ribosomal protein L24 [Translation,	100.0
PF01246	71	Ribosomal_L24e: Ribosomal protein L24e; InterPro:	100.0
PRK14891	131	50S ribosomal protein L24e/unknown domain fusion p	100.0
COG2075	66	RPL24A Ribosomal protein L24E [Translation, riboso	100.0
cd00472	54	Ribosomal_L24e_L24 Ribosomal protein L24e/L24 is a	99.97
PRK00807	52	50S ribosomal protein L24e; Validated	99.95
smart00746	39	TRASH metallochaperone-like domain.	98.43
PF08394	37	Arc_trans_TRASH: Archaeal TRASH domain; InterPro:	96.63
PF04945	47	YHS: YHS domain; InterPro: IPR007029 This short pr	96.46
PF06467	43	zf-FCS: MYM-type Zinc finger with FCS sequence mot	95.39
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	94.75
PF05573	149	NosL: NosL; InterPro: IPR008719 NosL is one of the	91.24
COG3350	53	Uncharacterized conserved protein [Function unknow	89.9
PF09943	101	DUF2175: Uncharacterized protein conserved in arch	87.1

>PTZ00033 60S ribosomal protein L24; Provisional

Probab=100.00  E-value=3.6e-42  Score=269.05  Aligned_cols=93  Identities=32%  Similarity=0.621  Sum_probs=89.0

Q ss_pred             CceeeeecCCCCccCCccceEEe----eCCceEEEechhhhhhhhcccCCccchhhHHHHHHhCCcceeeecccchhhhh
Q 030949            1 MRLEKCWFCSSTVYPGHGIQFVR----NDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQVNMFGFSILFC   76 (168)
Q Consensus         1 Mkie~CsFcG~kIYPGhG~~fVR----nDGkvF~FcsSKC~k~fk~KRNPRKlkWT~~yRr~~KK~~~~~~~~~~~~~~~   76 (168)
                      |+++.|+|||++||||||++||+    +||++|+||||||+++|++|+|||+|+||++||++|||+++            
T Consensus         1 Mk~~~C~Fsg~~IyPG~G~~~Vr~~~~~Dgkv~~F~~sKc~~~~~~krnPRkl~WT~~yRr~~kK~~~------------   68 (125)
T PTZ00033          1 MRTIACEFSHFAVHPGHGRRYVPFAFLSTKPVLTFLRPKCFALYMRKKNPRFLPWTRTYRRINRKTTT------------   68 (125)
T ss_pred             CceeEecCcCCcccCCCCcEeeecccCCCCCEEEEecHHHHHHHHCcCCCccchHHHHHHHHhCCcch------------
Confidence            89999999999999999999999    99999999999999999999999999999999999999977            


Q ss_pred             hHhhhhhHHhhhcCccccCCCcccCCchHHHHHhhCCCccccHHHHHHHHHHHHhH
Q 030949           77 NLFYLNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRNLAENTLKAIKKI  132 (168)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~d~t~e~ekrrn~~~ky~R~l~~~tl~aik~v  132 (168)
                                              +| +  +++|+|+|++|||+|||+|||+|++.
T Consensus        69 ------------------------e~-~--~kkR~~rtvK~qRaivg~sLe~I~~k   97 (125)
T PTZ00033         69 ------------------------DR-V--QRRRAARTVKVQRAIVGADLSYIQEV   97 (125)
T ss_pred             ------------------------hH-H--HHHHhcCCccchHHHHHHHHHHHHHH
Confidence                                    44 4  49999999999999999999999986

>KOG1723 consensus 60s ribosomal protein L30 isolog [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1e-39  Score=264.05  Aligned_cols=114  Identities=58%  Similarity=1.106  Sum_probs=112.4

Q ss_pred             CceeeeecCCCCccCCccceEEeeCCceEEEechhhhhhhhcccCCccchhhHHHHHHhCCcceeeecccchhhhhhHhh
Q 030949            1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQVNMFGFSILFCNLFY   80 (168)
Q Consensus         1 Mkie~CsFcG~kIYPGhG~~fVRnDGkvF~FcsSKC~k~fk~KRNPRKlkWT~~yRr~~KK~~~~~~~~~~~~~~~~~~~   80 (168)
                      |++++|+||+++||||||+|||+||.++|.||+|||+++|++++|||++.||.++|++++|++.                
T Consensus         1 Mri~kc~fcss~IyPgHgi~Fv~Nd~k~f~Fc~skc~k~f~~k~nPrk~~~tka~rKaagre~~----------------   64 (162)
T KOG1723|consen    1 MRIEKCYFCSSPIYPGHGIMFVRNDCKVFRFCKSKCHKNFKQKKNPRKVGWTKAFRKAAGRELV----------------   64 (162)
T ss_pred             CceeeeeeecCcccCCCceEEEecCcchhHHHHhhhhhhhhhhcCCCccchHHHHHHHhhhhHh----------------
Confidence            8999999999999999999999999999999999999999999999999999999999999999                


Q ss_pred             hhhHHhhhcCccccCCCcccCCchHHHHHhhCCCccccHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhh
Q 030949           81 LNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRFVI  150 (168)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~d~t~e~ekrrn~~~ky~R~l~~~tl~aik~v~~i~~~r~~~~~~~r~~~  150 (168)
                                          .|+++||++|||+|++|+|++++.|++||+++++|+++|++.++.+||..
T Consensus        65 --------------------~d~~~e~~~rrn~~~~y~r~~~~~Ti~a~k~v~~i~~~~~~~~i~~rL~~  114 (162)
T KOG1723|consen   65 --------------------TDSTFEFEKRRNVPRKYDRELINKTIDAMKRVLEIKQKREAHFIGNRLKK  114 (162)
T ss_pred             --------------------hhhhHHHHHhcCcchhhcccchhhHHHHHHHHHhhcccchhhhhhhccCc
Confidence                                89999999999999999999999999999999999999999999999965

>KOG1722 consensus 60s ribosomal protein L24 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.9e-36  Score=242.80  Aligned_cols=93  Identities=38%  Similarity=0.812  Sum_probs=86.5

Q ss_pred             CceeeeecCCCCccCCccceEEeeCCceEEEechhhhhhhhcccCCccchhhHHHHHHhCCcceeeecccchhhhhhHhh
Q 030949            1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQVNMFGFSILFCNLFY   80 (168)
Q Consensus         1 Mkie~CsFcG~kIYPGhG~~fVRnDGkvF~FcsSKC~k~fk~KRNPRKlkWT~~yRr~~KK~~~~~~~~~~~~~~~~~~~   80 (168)
                      |++|.|+|||++||||||+.|||.||+||.|+|+||+++|++++|||+|.||++||+.|+||.+                
T Consensus         1 MKvElCsFSG~KIyPG~G~r~vR~D~Kvf~Fln~Kc~~~f~~rrnPr~l~WTvLyR~khkKg~~----------------   64 (155)
T KOG1722|consen    1 MKVELCSFSGYKIYPGHGRRFVRGDGKVFRFLNSKCESLFLQRRNPRRLAWTVLYRKKHKKGIQ----------------   64 (155)
T ss_pred             CceeEeeccCceecCCCceeEEecCCeeeeehhhhhHHHHHhccChhhhhHHHHHHHHhhcchh----------------
Confidence            8999999999999999999999999999999999999999999999999999999999999987                


Q ss_pred             hhhHHhhhcCccccCCCcccCCchHHHHHhhCCCcc-ccHHHHHHHHHHHHhH
Q 030949           81 LNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPER-YDRNLAENTLKAIKKI  132 (168)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~d~t~e~ekrrn~~~k-y~R~l~~~tl~aik~v  132 (168)
                                          ++.+   .+|++++++ |||+|+|+||++|++-
T Consensus        65 --------------------ee~~---kkrtrrt~k~~qRaI~GasL~~I~~K   94 (155)
T KOG1722|consen   65 --------------------EEAA---KKRTRRTVKKFQRAIVGASLDVILEK   94 (155)
T ss_pred             --------------------HHHH---HHHhhhhhhhhhhhhccccHHHHHHH
Confidence                                6544   667777665 9999999999999875

>PF01246 Ribosomal_L24e: Ribosomal protein L24e; InterPro: IPR000988 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=7.6e-36  Score=213.57  Aligned_cols=64  Identities=61%  Similarity=1.131  Sum_probs=51.8

Q ss_pred             CceeeeecCCCCccCCccceEEeeCCceEEEechhhhhhhhcccCCccchhhHHHHHHhCCcce
Q 030949            1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMT   64 (168)
Q Consensus         1 Mkie~CsFcG~kIYPGhG~~fVRnDGkvF~FcsSKC~k~fk~KRNPRKlkWT~~yRr~~KK~~~   64 (168)
                      |++++|+|||++||||||++||++||++|+|||+||+++|++++|||+|+||++||++|||+++
T Consensus         1 mk~~~C~Fsg~~I~PG~G~~~Vr~DG~v~~F~s~Kc~~~~~~krnPrkl~WT~~~Rr~~kK~~~   64 (71)
T PF01246_consen    1 MKTEKCSFSGYKIYPGHGKMYVRNDGKVFYFCSSKCEKLFKLKRNPRKLKWTVAYRRQHKKGQS   64 (71)
T ss_dssp             SSSEE-TTT-SEE-SSSSEEEE-TTS-EEEESSHHHHHHHHTT--GGGSTTSTTTCHHH-----
T ss_pred             CceEEecccCCccCCCCCeEEEecCCCeEEEeCHHHHHHHHccCCcccchhHHHHHHHhCchhh
Confidence            8999999999999999999999999999999999999999999999999999999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeabacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families [] consists of mammalian ribosomal protein L24; yeast ribosomal protein L30A/B (Rp29) (YL21); Kluyveromyces lactis ribosomal protein L30; Arabidopsis thaliana ribosomal protein L24 homolog; Haloarcula marismortui ribosomal protein HL21/HL22; and Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ1201. These proteins have 60 to 160 amino-acid residues. This entry represents proteins related to the L24e ribosomal proteins.; PDB: 2ZKR_u 1VQ9_U 1VQL_U 1KD1_V 1VQP_U 3CCM_U 3CD6_U 3CCL_U 3CCR_U 1Q86_V ....

>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional

Probab=100.00  E-value=9.5e-35  Score=228.79  Aligned_cols=64  Identities=33%  Similarity=0.703  Sum_probs=62.2

Q ss_pred             CceeeeecCCCCccCCccceEEeeCCceEEEechhhhhhhhcccCCccchhhHHHHHHhCCcce
Q 030949            1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMT   64 (168)
Q Consensus         1 Mkie~CsFcG~kIYPGhG~~fVRnDGkvF~FcsSKC~k~fk~KRNPRKlkWT~~yRr~~KK~~~   64 (168)
                      |++++|+|||++||||||+|||||||++|+||||||+++|++|||||||+||++||+.++|...
T Consensus         2 m~~e~CsFcG~kIyPG~G~~fVR~DGkvf~FcssKC~k~f~~kRnPRKlkWT~~yRk~~g~~~~   65 (131)
T PRK14891          2 VETRTCDYTGEEIEPGTGTMFVRKDGTVLHFVDSKCEKNYDLGREARDLEWTEAGRAEKGPAAA   65 (131)
T ss_pred             CceeeecCcCCcccCCCCcEEEecCCCEEEEecHHHHHHHHccCCCccchhHHHHHHHcCchhh
Confidence            7999999999999999999999999999999999999999999999999999999999999854

>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=7.5e-34  Score=202.17  Aligned_cols=64  Identities=55%  Similarity=1.152  Sum_probs=62.5

Q ss_pred             CceeeeecCCCCccCCccceEEeeCCceEEEechhhhhhhhcccCCccchhhHHHHHHhCCcce
Q 030949            1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMT   64 (168)
Q Consensus         1 Mkie~CsFcG~kIYPGhG~~fVRnDGkvF~FcsSKC~k~fk~KRNPRKlkWT~~yRr~~KK~~~   64 (168)
                      |+++.|+|||.+||||||+|||||||++|+||||||+++|+++||||+|+||+.||+.++|+..
T Consensus         1 m~~~~CsFcG~~I~PGtG~m~Vr~Dg~v~~FcssKc~k~~~~~rnPRk~~WT~~~~~~~~k~~~   64 (66)
T COG2075           1 MKVRVCSFCGKKIEPGTGIMYVRNDGKVLRFCSSKCEKLFKLGRNPRKLKWTKKYRKMHKKEIK   64 (66)
T ss_pred             CceeEecCcCCccCCCceEEEEecCCeEEEEechhHHHHHHccCCCccchhHHHHHHHHHhhhc
Confidence            8899999999999999999999999999999999999999999999999999999999999875

>cd00472 Ribosomal_L24e_L24 Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24)

Probab=99.97  E-value=2.1e-32  Score=187.20  Aligned_cols=54  Identities=67%  Similarity=1.282  Sum_probs=52.7

Q ss_pred             CceeeeecCCCCccCCccceEEeeCCceEEEechhhhhhhhcccCCccchhhHH
Q 030949            1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA   54 (168)
Q Consensus         1 Mkie~CsFcG~kIYPGhG~~fVRnDGkvF~FcsSKC~k~fk~KRNPRKlkWT~~   54 (168)
                      |++++|+|||++||||||++|||+||++|+|||+||+++|++|||||||+||++
T Consensus         1 m~~~~C~f~g~~I~PG~G~~~Vr~Dgkv~~F~s~Kc~~~~~~krnPRkv~WT~~   54 (54)
T cd00472           1 MKTEKCSFCGYKIYPGHGKMYVRNDGKVFRFCSSKCEKNFLRKRNPRKLKWTVA   54 (54)
T ss_pred             CcEEEecCcCCeecCCCccEEEecCCCEEEEECHHHHHHHHCcCCCCcceeecC
Confidence            899999999999999999999999999999999999999999999999999973

L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor binding site. L24e/L24 appears to play a role in the kinetics of peptide synthesis, and may be involved in interactions between the large and small subunits, either directly or through other factors. In mouse, a deletion mutation in L24 has been identified as the cause for the belly spot and tail (Bst) mutation that results in disrupted pigmentation, somitogenesis and retinal cell fate determination. L24 may be an important protein in eukaryotic reproduction: in shrimp, L24 expression is elevated in the ovary, suggesting a role in oogenesis, and in Arabidopsis, L24 has been proposed to have a specific function in gynoecium development. No protein with sequence or structural homology to L24e/L24 has been identifi

>PRK00807 50S ribosomal protein L24e; Validated

Probab=99.95  E-value=9.9e-29  Score=167.00  Aligned_cols=52  Identities=50%  Similarity=1.047  Sum_probs=50.0

Q ss_pred             eeeeecCCCCccCCccceEEeeCCceEEEechhhhhhhhcccCCccchhhHH
Q 030949            3 LEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA   54 (168)
Q Consensus         3 ie~CsFcG~kIYPGhG~~fVRnDGkvF~FcsSKC~k~fk~KRNPRKlkWT~~   54 (168)
                      +++|+|||++||||||++||++||++|+|||+||+++|++|+|||||+||.+
T Consensus         1 ~~~C~fcG~~I~pg~G~~~vr~Dgkv~~Fcs~KC~~~f~~~~nprk~~WT~~   52 (52)
T PRK00807          1 TRTCSFCGKEIEPGTGKMYVKKDGTILYFCSSKCEKNYKLGRVPRKLKWTKA   52 (52)
T ss_pred             CcccCCCCCeEcCCCCeEEEEeCCcEEEEeCHHHHHHHHccCCCCccccccC
Confidence            4689999999999999999999999999999999999999999999999964

>smart00746 TRASH metallochaperone-like domain

Probab=98.43  E-value=3.2e-07  Score=51.20  Aligned_cols=37  Identities=57%  Similarity=1.186  Sum_probs=33.6

Q ss_pred             eecCCCCcc-CCccceEEeeCCceEEEechhhhhhhhcc
Q 030949            6 CWFCSSTVY-PGHGIQFVRNDAKIFRFCRSKCHKNFKMK   43 (168)
Q Consensus         6 CsFcG~kIY-PGhG~~fVRnDGkvF~FcsSKC~k~fk~K   43 (168)
                      |.+||..|+ |+.+..++ .||++++|||..|...|..+
T Consensus         1 c~~C~~~~~~~~~~~~~~-~~g~~~~FCs~~c~~~~~~~   38 (39)
T smart00746        1 CSFCGKDIYNPGTGIMVV-NDGKVFYFCSSKCLSKFKKK   38 (39)
T ss_pred             CCCCCCCccCCCCceEEE-ECCEEEEEeCHHHHHHHHhc
Confidence            889999999 88888888 99999999999999988654

>PF08394 Arc_trans_TRASH: Archaeal TRASH domain; InterPro: IPR013603 This region is found in the C terminus of a number of archaeal transcriptional regulators

Probab=96.63  E-value=0.0026  Score=41.21  Aligned_cols=36  Identities=31%  Similarity=0.753  Sum_probs=31.4

Q ss_pred             eecCCCCccCCccceEEeeCCceEEEechhhhhhhhcc
Q 030949            6 CWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMK   43 (168)
Q Consensus         6 CsFcG~kIYPGhG~~fVRnDGkvF~FcsSKC~k~fk~K   43 (168)
                      |.+||.+|. |.++.+ +-++++++||..-|.+-|+.|
T Consensus         1 Cd~CG~~I~-~eP~~~-k~~~~~y~fCC~tC~~~fk~k   36 (37)
T PF08394_consen    1 CDYCGGEIT-GEPIVV-KIGNKVYYFCCPTCLSQFKKK   36 (37)
T ss_pred             CCccCCccc-CCEEEE-EECCeEEEEECHHHHHHHHhh
Confidence            899999998 777764 559999999999999999865

It is thought to function as a metal-sensing regulatory module [].

>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long

Probab=96.46  E-value=0.003  Score=40.78  Aligned_cols=36  Identities=25%  Similarity=0.611  Sum_probs=26.5

Q ss_pred             eecCCCCccCCccceEEeeCCceEEEechhhhhhhhc
Q 030949            6 CWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKM   42 (168)
Q Consensus         6 CsFcG~kIYPGhG~~fVRnDGkvF~FcsSKC~k~fk~   42 (168)
                      ..-||-.| ||.....+.-+|+.++|||..|...|..
T Consensus         3 DPvcg~~v-~~~~~~~~~y~G~~Y~FCS~~C~~~F~~   38 (47)
T PF04945_consen    3 DPVCGMKV-PGNAAYSVEYNGRTYYFCSEGCKEKFEA   38 (47)
T ss_dssp             B-GGG-BE------EEEEETTEEEEESSHHHHHHHHC
T ss_pred             CCCCCCEE-ccCccEEEEECCEEEEEcCHHHHHHHHH
Confidence            45799999 9999999999999999999999999863

It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....

>PF06467 zf-FCS: MYM-type Zinc finger with FCS sequence motif; InterPro: IPR010507 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.39  E-value=0.0056  Score=38.12  Aligned_cols=37  Identities=22%  Similarity=0.556  Sum_probs=26.4

Q ss_pred             eeeeecCCCCccCCc-cceEEeeCCceEEEechhhhhhh
Q 030949            3 LEKCWFCSSTVYPGH-GIQFVRNDAKIFRFCRSKCHKNF   40 (168)
Q Consensus         3 ie~CsFcG~kIYPGh-G~~fVRnDGkvF~FcsSKC~k~f   40 (168)
                      ...|++|+..|+.+. + .-+..||+.-.|||.-|...|
T Consensus         6 ~~~C~~C~~~~~~~~~~-~~~~~~g~~~~FCS~~C~~~y   43 (43)
T PF06467_consen    6 MKTCSYCKKYIPNKPTM-IEVQYDGKMKQFCSQSCLSSY   43 (43)
T ss_dssp             CEE-TTT--EEECCC-----EE-TTTTSCCSSHHHHHHH
T ss_pred             CCcCcccCCcccCCCcc-ccccccCcccChhCHHHHhhC
Confidence            457999999999888 5 888899999999999997654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. MYM-type zinc fingers were identified in MYM family proteins []. Human protein Q14202 from SWISSPROT is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1 []. Q9UBW7 from SWISSPROT is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1 []; in atypical myeloproliferative disorders it is rearranged []. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2L8E_A 2DAS_A.

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=94.75  E-value=0.0054  Score=43.06  Aligned_cols=26  Identities=27%  Similarity=0.871  Sum_probs=22.4

Q ss_pred             eeeecCCCCccCCccceEEeeCCceEEEechhhhhhhh
Q 030949            4 EKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFK   41 (168)
Q Consensus         4 e~CsFcG~kIYPGhG~~fVRnDGkvF~FcsSKC~k~fk   41 (168)
                      ..|-.||.+|+|.            -.|||.+|++.+.
T Consensus         4 kHC~~CG~~Ip~~------------~~fCS~~C~~~~~   29 (59)
T PF09889_consen    4 KHCPVCGKPIPPD------------ESFCSPKCREEYR   29 (59)
T ss_pred             CcCCcCCCcCCcc------------hhhhCHHHHHHHH
Confidence            4699999999994            5799999999875

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster

Probab=91.24  E-value=0.15  Score=39.89  Aligned_cols=39  Identities=26%  Similarity=0.694  Sum_probs=16.3

Q ss_pred             eeeecCCCCc--cCCccceEEeeCC-ceEEEechhhhhhhhc
Q 030949            4 EKCWFCSSTV--YPGHGIQFVRNDA-KIFRFCRSKCHKNFKM   42 (168)
Q Consensus         4 e~CsFcG~kI--YPGhG~~fVRnDG-kvF~FcsSKC~k~fk~   42 (168)
                      +.|.+||-.|  |||.--..+-.|| ++++||+-+|--.|.+
T Consensus        26 ~~C~~CgM~i~d~p~~~aqi~~~~g~~~~~Fdsi~c~~~~~~   67 (149)
T PF05573_consen   26 DRCPVCGMVISDYPGFAAQIIYKDGEKVYKFDSIGCMFAYLK   67 (149)
T ss_dssp             -----------------EEEEETT-SSEEEES-HHHHHHHHT
T ss_pred             CccCCCCCEeccCCCccEEEEECCCCEEEEECCHHHHHHHHh
Confidence            6799999999  6875444444555 9999999999877654

NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.

>COG3350 Uncharacterized conserved protein [Function unknown]

Probab=89.90  E-value=0.45  Score=33.27  Aligned_cols=38  Identities=26%  Similarity=0.506  Sum_probs=29.5

Q ss_pred             ecCCCCccCCccceEEeeCCceEEEechhhhhhhhcccCC
Q 030949            7 WFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNP   46 (168)
Q Consensus         7 sFcG~kIYPGhG~~fVRnDGkvF~FcsSKC~k~fk~KRNP   46 (168)
                      .-||.+|.+-.-.-=.--+|+.++|||..|...|+  .||
T Consensus         6 PVcgm~v~~~~a~~k~~Y~GktYYFcse~~~~~F~--~~P   43 (53)
T COG3350           6 PVCGMKVDNENAEYKSSYGGKTYYFCSEECKEKFK--DNP   43 (53)
T ss_pred             CCcCccccccccceeEEeCCEEEEEeCHHHHHHHH--HCH
Confidence            35788887766666666789999999999988874  455

>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function

Probab=87.10  E-value=0.25  Score=38.18  Aligned_cols=29  Identities=24%  Similarity=0.684  Sum_probs=22.9

Q ss_pred             eeeeecCCCCccCCccceEEeeCCceEEEe
Q 030949            3 LEKCWFCSSTVYPGHGIQFVRNDAKIFRFC   32 (168)
Q Consensus         3 ie~CsFcG~kIYPGhG~~fVRnDGkvF~Fc   32 (168)
                      ..+|++||.+|+-|..-+|.++ |-|.+=|
T Consensus         2 kWkC~iCg~~I~~gqlFTF~~k-G~VH~~C   30 (101)
T PF09943_consen    2 KWKCYICGKPIYEGQLFTFTKK-GPVHYEC   30 (101)
T ss_pred             ceEEEecCCeeeecceEEEecC-CcEeHHH
Confidence            3589999999999888888877 7765443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	168
2zkr_u	157	Structure Of A Mammalian Ribosomal 60s Subunit With		5e-13
3izs_Z	155	Localization Of The Large Subunit Ribosomal Protein		1e-11
3izr_Z	162	Localization Of The Large Subunit Ribosomal Protein		2e-10
1s1i_S	56	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		7e-10
3j21_V	66	Promiscuous Behavior Of Proteins In Archaeal Riboso		1e-09
3jyw_S	45	Structure Of The 60s Proteins For Eukaryotic Riboso		1e-08
2qa4_U	67	A More Complete Structure Of The The L7L12 STALK OF		5e-08
1ffk_R	66	Crystal Structure Of The Large Ribosomal Subunit Fr		5e-08
3zf7_Y	125	High-resolution Cryo-electron Microscopy Structure		3e-07
3g4s_U	53	Co-Crystal Structure Of Tiamulin Bound To The Large		9e-07

>pdb|2ZKR|UU Chain u, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 157

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 41/65 (63%)
Query: 1  MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
          M++E C F    +YPGHG ++ R D K+F+F  +KC   F  KRNPR++ WT  YRR H 
Sbjct: 1  MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60
Query: 61 KDMTQ 65
          K  ++
Sbjct: 61 KGQSE 65

>pdb|3IZS|Z Chain Z, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 155

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 42/65 (64%)
Query: 1  MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
          M++E   F  + +YPG G  FVR D+KIFRF  SK    FK ++NPR++ WT  +R+ H 
Sbjct: 1  MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHK 60
Query: 61 KDMTQ 65
          K +T+
Sbjct: 61 KGITE 65

>pdb|3IZR|Z Chain Z, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 162

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 1  MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
          ++ E C F    +YPG GI+F+R D+++F F  SKC + F  +  P K+ WT  YR+ H 
Sbjct: 3  LKTELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHK 62
Query: 61 KDM 63
          KD+
Sbjct: 63 KDI 65

>pdb|1S1I|S Chain S, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h. Length = 56

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 36/56 (64%)
Query: 1  MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR 56
          M++E   F  + +YPG G  FVR D+KIFRF  SK    FK ++NPR++ WT  +R
Sbjct: 1  MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFR 56

>pdb|3J21|V Chain V, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 66

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 34/55 (61%)
Query: 2  RLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR 56
          R   C +C     PG G  +VRND ++  FC  KC + + M RNPRK+KWTKAY+
Sbjct: 3  RWNVCSYCGKPFEPGTGKMYVRNDGRVLFFCSRKCERYYFMGRNPRKLKWTKAYQ 57

>pdb|3JYW|S Chain S, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 45

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 8  FCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWT 52
          F  + +YPG G  FVR D+KIFRF  SK    FK ++NPR++ WT
Sbjct: 1  FSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWT 45

>pdb|2QA4|U Chain U, A More Complete Structure Of The The L7L12 STALK OF THE Haloarcula Marismortui 50s Large Ribosomal Subunit Length = 67

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 29/60 (48%)
Query: 2  RLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGK 61
          R  +C +C + + PG G  FV  D     FC SKC  N  + R  R ++WT   R   G+
Sbjct: 3  RTRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTARGEAGE 62

>pdb|1FFK|R Chain R, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 66

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 29/60 (48%)
Query: 2  RLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGK 61
          R  +C +C + + PG G  FV  D     FC SKC  N  + R  R ++WT   R   G+
Sbjct: 2  RTRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTARGEAGE 61

>pdb|3ZF7|Y Chain Y, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 125

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 1  MRLEKCWFCSSTVYPGHGIQFVR----NDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR 56
          MR   C F    V+PGHG ++V     +   +  F R KC   +  K+NPR + WT+ YR
Sbjct: 1  MRTIDCEFSHFAVHPGHGRRYVPFAFLSTKPVLTFARPKCFAMYMRKKNPRFIAWTRTYR 60
Query: 57 RLHGKDMTQ 65
          R+H K  T 
Sbjct: 61 RIHRKTTTD 69

>pdb|3G4S|U Chain U, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 53

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 5  KCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR 56
          +C +C + + PG G  FV  D     FC SKC  N  + R  R ++WT   R
Sbjct: 2  ECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTAR 53

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	168
3iz5_Z	162	60S ribosomal protein L24 (L24E); eukaryotic ribos	5e-38
2zkr_u	157	60S ribosomal protein L24; protein-RNA complex, 60	7e-37
3izc_Z	155	60S ribosomal protein RPL24 (L24E); eukaryotic rib	9e-36
4a17_T	158	RPL24, 60S ribosomal protein L21; eukaryotic ribos	9e-34
1vq8_U	66	50S ribosomal protein L24E; ribosome 50S, protein-	2e-31
3jyw_S	45	60S ribosomal protein L24(A); eukaryotic ribosome,	7e-22

>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 157

 Score =  124 bits (311), Expect = 7e-37
 Identities = 33/147 (22%), Positives = 55/147 (37%), Gaps = 39/147 (26%)

Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           M++E C F    +YPGHG ++ R D K+F+F  +KC   F  KRNPR++ WT  YRR H 
Sbjct: 1   MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60

Query: 61  KDMTQVNMFGFSILFCNLFYLNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRN 120
           K  ++                                          +++  R  ++ R 
Sbjct: 61  KGQSEEIQ---------------------------------------KKRTRRAVKFQRA 81

Query: 121 LAENTLKAIKKIDKIRVAREERHHKLR 147
           +   +L  I      +    +   +  
Sbjct: 82  ITGASLADIMAKRNQKPEVRKAQREQA 108

>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T Length = 158

 Score =  116 bits (290), Expect = 9e-34
 Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 39/147 (26%)

Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           +R   C FC   +YPG G +F+  D + F F   K       K   +K+ WT A RRL  
Sbjct: 3   VRTGTCSFCEYRIYPGRGQRFIAKDGRGFFFLTKKAKCLSLRKVKAQKITWTIARRRLWK 62

Query: 61  KDMTQVNMFGFSILFCNLFYLNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRN 120
           K                                              ++K+ R     R 
Sbjct: 63  KVKATDIA---------------------------------------QKKKKRNVTVARA 83

Query: 121 LAENTLKAIKKIDKIRVAREERHHKLR 147
           +   +L+ I +   +  + ++   +  
Sbjct: 84  IVGISLEEINRRKNLDASHKKAEAEKA 110

>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ... Length = 66

 Score =  107 bits (268), Expect = 2e-31
 Identities = 21/64 (32%), Positives = 30/64 (46%)

Query: 2  RLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGK 61
          R  +C +C + + PG G  FV  D     FC SKC  N  + R  R ++WT   R   G+
Sbjct: 2  RTRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTARGEAGE 61

Query: 62 DMTQ 65
             +
Sbjct: 62 AEDE 65

>3jyw_S 60S ribosomal protein L24(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} Length = 45

 Score = 82.0 bits (203), Expect = 7e-22
 Identities = 23/45 (51%), Positives = 30/45 (66%)

Query: 8  FCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWT 52
          F  + +YPG G  FVR D+KIFRF  SK    FK ++NPR++ WT
Sbjct: 1  FSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWT 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
3izc_Z	155	60S ribosomal protein RPL24 (L24E); eukaryotic rib	100.0
4a17_T	158	RPL24, 60S ribosomal protein L21; eukaryotic ribos	100.0
2zkr_u	157	60S ribosomal protein L24; protein-RNA complex, 60	100.0
3iz5_Z	162	60S ribosomal protein L24 (L24E); eukaryotic ribos	100.0
1vq8_U	66	50S ribosomal protein L24E; ribosome 50S, protein-	100.0
3j21_V	66	50S ribosomal protein L24E; archaea, archaeal, KIN	100.0
3jyw_S	45	60S ribosomal protein L24(A); eukaryotic ribosome,	99.95
2hpu_A	175	NOSL protein; alpha beta topology, metal transport	91.41
2l8e_A	49	Polyhomeotic-like protein 1; DNA binding protein;	85.96
1mty_D	512	Methane monooxygenase hydroxylase; dinuclear iron	84.46

>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T

Probab=100.00  E-value=7.2e-44  Score=286.06  Aligned_cols=94  Identities=30%  Similarity=0.508  Sum_probs=59.7

Q ss_pred             CceeeeecCCCCccCCccceEEeeCCceEEEechhhhhhhhcccCCccchhhHHHHHHhCCcceeeecccchhhhhhHhh
Q 030949            1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQVNMFGFSILFCNLFY   80 (168)
Q Consensus         1 Mkie~CsFcG~kIYPGhG~~fVRnDGkvF~FcsSKC~k~fk~KRNPRKlkWT~~yRr~~KK~~~~~~~~~~~~~~~~~~~   80 (168)
                      |++++|+|||++||||||+|||||||++|+||||||+++|++++|||+|+||++||+.|+||++                
T Consensus         3 mk~~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f~~krnPRkl~WT~~yRr~~kK~~~----------------   66 (158)
T 4a17_T            3 VRTGTCSFCEYRIYPGRGQRFIAKDGRGFFFLTKKAKCLSLRKVKAQKITWTIARRRLWKKVKA----------------   66 (158)
T ss_dssp             CCCEECTTTCCEECTTCCEEEECTTSCEEEESCHHHHHHHHHTCCGGGSTTSHHHHHHHC--------------------
T ss_pred             eEEEEecCcCCcccCCCCeEEEeeCCceEEEEcHHHHHHHHcccCcccchhHHHHHHHhCCcch----------------
Confidence            8999999999999999999999999999999999999999999999999999999999999999                


Q ss_pred             hhhHHhhhcCccccCCCcccCCchHHHHHhhCCCccccHHHHHHHHHHHHhHH
Q 030949           81 LNMFMRISGDLFFSFPFSYRQDSTFEFERKRNRPERYDRNLAENTLKAIKKID  133 (168)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~d~t~e~ekrrn~~~ky~R~l~~~tl~aik~v~  133 (168)
                                          +|++   ++|+|+|++|||+||++||++|++..
T Consensus        67 --------------------~e~~---kkr~~r~vK~~R~ivg~sl~~I~~kR   96 (158)
T 4a17_T           67 --------------------TDIA---QKKKKRNVTVARAIVGISLEEINRRK   96 (158)
T ss_dssp             -----------------------------------------------------
T ss_pred             --------------------HHHH---HHHhcCCcccchhhhhhhHHHHHHHH
Confidence                                8888   89999999999999999999998763

>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=1e-43  Score=284.74  Aligned_cols=92  Identities=39%  Similarity=0.819  Sum_probs=53.0

Q ss_pred             CceeeeecCCCCccCCccceEEeeCCceEEEechhhhhhhhcccCCccchhhHHHHHHhCCcceeeecccchhhhhhHhh
Q 030949            1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQVNMFGFSILFCNLFY   80 (168)
Q Consensus         1 Mkie~CsFcG~kIYPGhG~~fVRnDGkvF~FcsSKC~k~fk~KRNPRKlkWT~~yRr~~KK~~~~~~~~~~~~~~~~~~~   80 (168)
                      |++++|+|||++||||||+|||||||++|+||||||+++|++++|||+|+||++||+.|||+++                
T Consensus         1 Mk~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~f~~krnPRKl~WT~~yRr~~kK~~~----------------   64 (157)
T 2zkr_u            1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQS----------------   64 (157)
T ss_dssp             ---CBCTTTCCBCCTTCCEEEECTTSCEEEESSHHHHHHHHTTCCTTTCTTCSTTC------------------------
T ss_pred             CCeeeecCcCCcccCCCceEEEeeCCcEEEEecHHHHHHHHccCCcccchhHHHHHHHhcchHH----------------
Confidence            8999999999999999999999999999999999999999999999999999999999999999                


Q ss_pred             hhhHHhhhcCccccCCCcccCCchHHHHHhhC-CCccccHHHHHHHHHHHHhH
Q 030949           81 LNMFMRISGDLFFSFPFSYRQDSTFEFERKRN-RPERYDRNLAENTLKAIKKI  132 (168)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~d~t~e~ekrrn-~~~ky~R~l~~~tl~aik~v  132 (168)
                                          +    ||+++|+ +|++|||+|||+||++|++.
T Consensus        65 --------------------~----e~~KkR~r~~vK~~R~ivg~sl~~I~~k   93 (157)
T 2zkr_u           65 --------------------E----EIQKKRTRRAVKFQRAITGASLADIMAK   93 (157)
T ss_dssp             -----------------------------------------------------
T ss_pred             --------------------H----HHHHHHhcCccceeHHHHHhhHHHHHHH
Confidence                                4    6788886 89999999999999999885

>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...

Probab=100.00  E-value=5.7e-38  Score=221.34  Aligned_cols=64  Identities=33%  Similarity=0.713  Sum_probs=53.0

Q ss_pred             CceeeeecCCCCccCCccceEEeeCCceEEEechhhhhhhhcccCCccchhhHHHHHHhCCcce
Q 030949            1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMT   64 (168)
Q Consensus         1 Mkie~CsFcG~kIYPGhG~~fVRnDGkvF~FcsSKC~k~fk~KRNPRKlkWT~~yRr~~KK~~~   64 (168)
                      |++++|+|||++||||||+||||+||++|+||||||+++|++|||||||+||++||++||||++
T Consensus         1 mk~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKc~k~f~~krnPRkl~WT~~yRr~~kK~~~   64 (66)
T 1vq8_U            1 PRTRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTARGEAGEAED   64 (66)
T ss_dssp             ---CBCTTTCCBCCSSCCEEEECTTSCEEEESCHHHHHHHHTTCCGGGCTTSTTTC--------
T ss_pred             CCeeEecCcCCcccCCCceEEEeeCCcEEEEECHHHHHHHHcccCcccchhHHHHHHHhccccc
Confidence            8999999999999999999999999999999999999999999999999999999999999986

>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=8.8e-35  Score=205.08  Aligned_cols=59  Identities=44%  Similarity=0.956  Sum_probs=57.5

Q ss_pred             CceeeeecCCCCccCCccceEEeeCCceEEEechhhhhhhhcccCCccchhhHHHHHHh
Q 030949            1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLH   59 (168)
Q Consensus         1 Mkie~CsFcG~kIYPGhG~~fVRnDGkvF~FcsSKC~k~fk~KRNPRKlkWT~~yRr~~   59 (168)
                      |++++|+|||++||||||++||||||++|+||||||+++|++|||||||+||++||+..
T Consensus         2 ~~~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~f~~krnPRkl~WT~~yRk~~   60 (66)
T 3j21_V            2 ARWNVCSYCGKPFEPGTGKMYVRNDGRVLFFCSRKCERYYFMGRNPRKLKWTKAYQEAR   60 (66)
T ss_dssp             CCCCBCTTTCSBCCTTCCEEEECSSSCEEEESSHHHHHHHHTTCCTTTCSSSHHHHHHH
T ss_pred             CceeEecCcCCcccCCCCeEEEecCCcEEEEECHHHHHHHHcCCCcccchHHHHHHHHh
Confidence            68999999999999999999999999999999999999999999999999999999964

>3jyw_S 60S ribosomal protein L24(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=99.95  E-value=2.2e-29  Score=166.29  Aligned_cols=45  Identities=51%  Similarity=1.025  Sum_probs=44.7

Q ss_pred             cCCCCccCCccceEEeeCCceEEEechhhhhhhhcccCCccchhh
Q 030949            8 FCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWT   52 (168)
Q Consensus         8 FcG~kIYPGhG~~fVRnDGkvF~FcsSKC~k~fk~KRNPRKlkWT   52 (168)
                      |||++||||||+||||+||++|+||||||+++|++|||||||+||
T Consensus         1 F~g~~IyPG~G~~~Vr~Dgkvf~FcssKc~k~~~~krnPrkl~WT   45 (45)
T 3jyw_S            1 FSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWT   45 (45)
T ss_dssp             CCCCCCCTTCCCEECTTTSCCCCCCSHHHHGGGTSCCCTTTCCCC
T ss_pred             CCCCcccCCCCeEEEecCCCEEEEECHHHHHHHHcCCCCccCccC
Confidence            899999999999999999999999999999999999999999998

>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A

Probab=91.41  E-value=0.093  Score=41.67  Aligned_cols=41  Identities=12%  Similarity=0.242  Sum_probs=19.6

Q ss_pred             eeeeecCCCCc--cCCc-cceEEeeCCceEEEechhhhhhhhcc
Q 030949            3 LEKCWFCSSTV--YPGH-GIQFVRNDAKIFRFCRSKCHKNFKMK   43 (168)
Q Consensus         3 ie~CsFcG~kI--YPGh-G~~fVRnDGkvF~FcsSKC~k~fk~K   43 (168)
                      ...|.+||-.|  |||. |.++..+.|++++||+-+|--.|.+.
T Consensus        18 ~~~C~~CgM~i~~~p~~~aqI~~~~~g~~~~F~s~~cm~~~~~~   61 (175)
T 2hpu_A           18 ETLGHYCQMNLLEHPGPKAQIFLEGSPAPLFFSQVRDAIAYARG   61 (175)
T ss_dssp             -----------------CEEEEETTCSSEEEESCHHHHHHHHTT
T ss_pred             CceeCCCCcCcccCCCccEEEEECCCCcEEEECCHHHHHHHHhc
Confidence            46899999998  3565 45555544999999999998877643

>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}

Probab=85.96  E-value=0.15  Score=33.60  Aligned_cols=30  Identities=27%  Similarity=0.551  Sum_probs=23.9

Q ss_pred             eeeecCCCCccCCccceEEeeCCceEEEechhhhhhh
Q 030949            4 EKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNF   40 (168)
Q Consensus         4 e~CsFcG~kIYPGhG~~fVRnDGkvF~FcsSKC~k~f   40 (168)
                      ..|.+||.+|.|.++       ++.=+|||..|++.|
T Consensus        19 ~~C~~CG~~i~~~~~-------~r~krFCS~sCR~~y   48 (49)
T 2l8e_A           19 LKCEYCGKYAPAEQF-------RGSKRFCSMTCAKRY   48 (49)
T ss_dssp             EECTTTCCEEEGGGC-------TTTSSSCSHHHHHHH
T ss_pred             CcChhccCccccccC-------CCCCccCCHHHHhhh
Confidence            579999999999764       333469999999876

>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1mmo_D 1xvb_A 1fyz_A 1fz0_A 1fz2_A 1fz3_A 1fz4_A 1fz5_A 1fz6_A 1fz7_A 1fz8_A 1fz9_A 1fzh_A 1fzi_A 1xmf_A 1xmg_A 1xmh_A 1xu3_A 1xu5_A 1fz1_A ...

Probab=84.46  E-value=0.56  Score=42.98  Aligned_cols=55  Identities=9%  Similarity=0.183  Sum_probs=42.3

Q ss_pred             eeeecCCCCc----cCCccceEE-eeCCceEEEechhhhhhhhcccCCccc----hhhHHHHHHhCCcce
Q 030949            4 EKCWFCSSTV----YPGHGIQFV-RNDAKIFRFCRSKCHKNFKMKRNPRKV----KWTKAYRRLHGKDMT   64 (168)
Q Consensus         4 e~CsFcG~kI----YPGhG~~fV-RnDGkvF~FcsSKC~k~fk~KRNPRKl----kWT~~yRr~~KK~~~   64 (168)
                      ..|.-|+-++    .||....++ --+|+.++|||.-|+.-|.  +||-+-    .|+   | .+|-++.
T Consensus       402 ~~c~vC~~p~~~~~~~~~~~~~~~~y~G~~y~FCs~~Ck~~F~--~~PerY~~~~~~~---~-~~G~~l~  465 (512)
T 1mty_D          402 YIDRVSQVPFCPSLAKGASTLRVHEYNGEMHTFSDQWGERMWL--AEPERYECQNIFE---Q-YEGRELS  465 (512)
T ss_dssp             EECTTTCCEECTTTCSSCCCCEEEEETTEEEEESSHHHHHHHH--HCGGGCCCCCHHH---H-STTCBHH
T ss_pred             eeCCCCCCcccccCCCCCCceeEEEECCEEEEecCHHHHHHHH--hChHHhhhcchHH---H-hcCCCHH
Confidence            3699999984    557776665 5799999999999999997  688775    566   4 6664443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	168
d1vqou1	53	g.39.1.6 (U:4-56) Ribosomal protein L24e {Archaeon	1e-26

>d1vqou1 g.39.1.6 (U:4-56) Ribosomal protein L24e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 53

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Ribosomal protein L24e
domain: Ribosomal protein L24e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 93.2 bits (232), Expect = 1e-26
 Identities = 19/52 (36%), Positives = 26/52 (50%)

Query: 5  KCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR 56
          +C +C + + PG G  FV  D     FC SKC  N  + R  R ++WT   R
Sbjct: 2  ECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTAR 53

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	168
d1vqou1	53	Ribosomal protein L24e {Archaeon Haloarcula marism	99.97

>d1vqou1 g.39.1.6 (U:4-56) Ribosomal protein L24e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Ribosomal protein L24e
domain: Ribosomal protein L24e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.97  E-value=8.2e-33  Score=186.73  Aligned_cols=53  Identities=36%  Similarity=0.848  Sum_probs=51.5

Q ss_pred             eeeecCCCCccCCccceEEeeCCceEEEechhhhhhhhcccCCccchhhHHHH
Q 030949            4 EKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR   56 (168)
Q Consensus         4 e~CsFcG~kIYPGhG~~fVRnDGkvF~FcsSKC~k~fk~KRNPRKlkWT~~yR   56 (168)
                      .+|+|||++||||||+||||+||++|+||||||+++|++|+|||||+||++||
T Consensus         1 r~CsF~g~~I~PG~G~~~Vr~Dg~v~~F~ssKc~~~~~~krnPrk~~WT~~yR   53 (53)
T d1vqou1           1 RECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTAR   53 (53)
T ss_dssp             CBCTTTCCBCCTTCCEEEECTTSCEEEESCHHHHHHHHTTCCGGGCTTSTTTC
T ss_pred             CcccccCCeecCCCCEEEEecCCCEEEEeCHHHHHHHHcCCCcccceeeeccC
Confidence            37999999999999999999999999999999999999999999999999986