Citrus Sinensis ID: 030957

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MQEQATSSIAASSLPSSSERSSSSALHLEVKEGMESDEEIRRVPEIGGEPGGTSASGRELVSTGGPDRVQQLGEGQRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRGGSGGDTNADGSF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEcccccccccccccc
Coil and Loop (DISEMBL)
mqeqatssiaasslpssserssssaLHLEVkegmesdeeirrvpeiggepggtsasgrelvstggpdrvqqlgegqrkrgrspadkENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNttasrrggsggdtnadgsf
Flexible Loop (DISEMBL)
mqeqatssiaasslpssserssssaLHLEVKegmesdeeirrvpeiggepggtsasgrelvstggpdrvqqlgegqrkrgrspadkenkrlkrllrnrvsaqqarerkkaylneletrvkdlerknselDERLSTLQNENQMLRHILknttasrrggsggdtnadgsf
Low Complexity Region (SEG)
MQEQatssiaasslpssserssssaLHLEVKEGMESDEEIRRVPEIGGEPGGTSASGRELVSTGGPDRVQQLGEGQRKRGRSPADKEnkrlkrllrnrVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRGGSGGDTNADGSF
Disordered region (IsUnstruct)
************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
********************************************************************************************************RERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLR************************
Disordered Region (DISEMBL)
**************************************EIRRVPEIGGE**************GGPDRVQQ***************ENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTAS***************
Disordered Region (DISPRO)
***************************************************************************************NKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQEQATSSIAASSLPSSSERSSSSALHLEVKEGMESDEEIRRVPEIGGEPGGTSASGRELVSTGGPDRVQQLGEGQRKRGRSPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLKNTTASRRGGSGGDTNADGSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
O24646	168	Transcription factor HY5	yes	no	0.994	0.994	0.786	5e-53
Q9SM50	158	Transcription factor HY5	N/A	no	0.892	0.949	0.823	1e-52
Q8W191	149	Transcription factor HY5-	no	no	0.690	0.778	0.504	2e-23
Q8TFU8	350	Transcriptional activator	yes	no	0.476	0.228	0.387	2e-08
Q1XGE2	345	Transcriptional activator	yes	no	0.476	0.231	0.4	6e-08
Q54WN7	631	Probable basic-leucine zi	yes	no	0.488	0.129	0.362	8e-08
O35426	267	X-box-binding protein 1 O	yes	no	0.363	0.228	0.507	5e-07
Q9R1S4	267	X-box-binding protein 1 O	yes	no	0.363	0.228	0.507	6e-07
Q3SZZ2	261	X-box-binding protein 1 O	yes	no	0.547	0.352	0.398	1e-06
P17861	261	X-box-binding protein 1 O	no	no	0.363	0.233	0.492	4e-06

>sp|O24646|HY5_ARATH Transcription factor HY5 OS=Arabidopsis thaliana GN=HY5 PE=1 SV=1

 Score =  206 bits (524), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 133/169 (78%), Positives = 145/169 (85%), Gaps = 2/169 (1%)

Query: 1   MQEQATSSIAASSLPSSSERSSSSALHLEVKEGMESDEEIRRVPEIGGEPGGTSASGREL 60
           MQEQATSS+AASSLPSSSERSSSSA HLE+KEG+ESDEEIRRVPE GGE  G   SGRE 
Sbjct: 1   MQEQATSSLAASSLPSSSERSSSSAPHLEIKEGIESDEEIRRVPEFGGEAVGKETSGRES 60

Query: 61  VSTGGPDRVQ-QLGEGQRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLNELETRV 119
            S  G +R Q  +GE QRKRGR+PA+KENKRLKRLLRNRVSAQQARERKKAYL+ELE RV
Sbjct: 61  GSATGQERTQATVGESQRKRGRTPAEKENKRLKRLLRNRVSAQQARERKKAYLSELENRV 120

Query: 120 KDLERKNSELDERLSTLQNENQMLRHILKNTTASRRGGSGGDTNADGSF 168
           KDLE KNSEL+ERLSTLQNENQMLRHILKNTT ++R G GG +NAD S 
Sbjct: 121 KDLENKNSELEERLSTLQNENQMLRHILKNTTGNKR-GGGGGSNADASL 168

Transcription factor that promotes photomorphogenesis in the light. Acts downstream of the light receptor network and directly affects transcription of light-induced genes. Specifically involved in blue-light specific pathway, suggesting that it participates in transmission of cryptochromes (CRY1 and CRY2) signals to downstream responses. In darkness, its degradation prevent the activation of light-induced genes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SM50|HY5_SOLLC Transcription factor HY5 OS=Solanum lycopersicum GN=HY5 PE=2 SV=1

 Score =  205 bits (522), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/153 (82%), Positives = 135/153 (88%), Gaps = 3/153 (1%)

Query: 1   MQEQATSSIAASSLPSSSERSSSSALHLEVKEGMESDEEIRRVPEIGGEPGGT-SASGRE 59
           MQEQATSSIAASSLPSSSERSSSSALH E+KEGMESD+EIRRVPE+GGE  GT SASGR+
Sbjct: 1   MQEQATSSIAASSLPSSSERSSSSALHHELKEGMESDDEIRRVPEMGGEATGTTSASGRD 60

Query: 60  LVSTGGPDRVQQLGEGQRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLNELETRV 119
            VS  G  + Q     QRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYL +LE RV
Sbjct: 61  GVSAAG--QAQPSAGTQRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLIDLEARV 118

Query: 120 KDLERKNSELDERLSTLQNENQMLRHILKNTTA 152
           K+LE KN+EL+ERLSTLQNENQMLRHILKNTTA
Sbjct: 119 KELETKNAELEERLSTLQNENQMLRHILKNTTA 151

Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes.

Solanum lycopersicum (taxid: 4081)

>sp|Q8W191|HYH_ARATH Transcription factor HY5-like OS=Arabidopsis thaliana GN=HYH PE=1 SV=1

 Score =  108 bits (270), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/119 (50%), Positives = 83/119 (69%), Gaps = 3/119 (2%)

Query: 35  ESDEEIRRVPEI--GGEPGGTSASGRELVSTGGPDRVQQ-LGEGQRKRGRSPADKENKRL 91
           ESDEE+  VP++   G     S+S  + V+    D+ Q  +   +R+RGR+P DKE + L
Sbjct: 23  ESDEELLMVPDMEAAGSTCVLSSSADDGVNNPELDQTQNGVSTAKRRRGRNPVDKEYRSL 82

Query: 92  KRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150
           KRLLRNRVSAQQARERKK Y+++LE+R  +L+  N +L+E++STL NEN MLR +L NT
Sbjct: 83  KRLLRNRVSAQQARERKKVYVSDLESRANELQNNNDQLEEKISTLTNENTMLRKMLINT 141

Transcription factor that promotes photomorphogenesis in the light. Acts downstream of the light receptor network and directly affects transcription of light-induced genes. Specifically involved in blue-light specific pathway, suggesting that it participates in transmission of cryptochromes (CRY1 and CRY2) signals to downstream responses. In darkness, its degradation prevent the activation of light-induced genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8TFU8|HAC1_EMENI Transcriptional activator hacA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=hacA PE=2 SV=2

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 53/80 (66%)

Query: 77  RKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTL 136
           RKR ++  +KE +R++R+LRNR +AQ +RERK+  + +LE+   D+E++N  L +RL+ +
Sbjct: 77  RKRAKTEDEKEQRRIERVLRNRAAAQTSRERKRLEMEKLESEKIDMEQQNQFLLQRLAQM 136

Query: 137 QNENQMLRHILKNTTASRRG 156
           + EN  L   +   +A  RG
Sbjct: 137 EAENNRLSQQVAQLSAEVRG 156

Transcriptional activator involved in the unfolded protein response (UPR) pathway. Recognizes and binds to the UPR element (UPRE) in the promoter of UPR-regulated genes. Increases the synthesis of endoplasmic reticulum-resident proteins required for protein folding as well as components of the secretory pathway.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q1XGE2|HAC1_ASPOR Transcriptional activator hacA OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=hacA PE=2 SV=1

 Score = 57.0 bits (136), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 50/80 (62%)

Query: 77  RKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTL 136
           RKR ++  +KE +R++R+LRNR +AQ +RERK+  + +LE     +E++N  L +RLS +
Sbjct: 73  RKRAKTEDEKEQRRIERVLRNRAAAQTSRERKRLEMEKLENEKIQMEQQNQFLLQRLSQM 132

Query: 137 QNENQMLRHILKNTTASRRG 156
           + EN  L   L    A  RG
Sbjct: 133 EAENNRLSQQLAQLAAEVRG 152

Transcriptional activator involved in the unfolded protein response (UPR) pathway. Recognizes and binds to the UPR element (UPRE) in the promoter of UPR-regulated genes. Increases the synthesis of endoplasmic reticulum-resident proteins required for protein folding as well as components of the secretory pathway.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

>sp|Q54WN7|BZPF_DICDI Probable basic-leucine zipper transcription factor F OS=Dictyostelium discoideum GN=bzpF PE=3 SV=1

 Score = 56.6 bits (135), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 9/91 (9%)

Query: 85  DKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLR 144
           ++  KR +RL++NR +AQ  R+R+KAY+ +LE +V DL   NSE   R+  L +EN+++R
Sbjct: 403 ERHQKRQRRLVKNREAAQLFRQRQKAYIQDLEKKVSDLTGTNSEFRARVELLNSENKLIR 462

Query: 145 H---ILKN------TTASRRGGSGGDTNADG 166
                L+N      + +  +GGS G  +  G
Sbjct: 463 EQLLYLRNFVTQAVSFSFPKGGSNGTNSPSG 493

Probable transcriptional regulator.

Dictyostelium discoideum (taxid: 44689)

>sp|O35426|XBP1_MOUSE X-box-binding protein 1 OS=Mus musculus GN=Xbp1 PE=2 SV=2

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 46/69 (66%), Gaps = 8/69 (11%)

Query: 77  RKRGR-SPADKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLST 135
           RKR R +    E K L+R L+NRV+AQ AR+RKKA ++ELE +V DLE +N +       
Sbjct: 52  RKRQRLTHLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEENHK------- 104

Query: 136 LQNENQMLR 144
           LQ ENQ+LR
Sbjct: 105 LQLENQLLR 113

Transcription factor essential for hepatocyte growth, the differentiation of plasma cells, the immunoglobulin secretion, and the unfolded protein response (UPR). Acts during endoplasmic reticulum stress (ER) by activating unfolded protein response (UPR) target genes via direct binding to the UPR element (UPRE). Binds DNA preferably to the CRE-like element 5'-GATGACGTG[TG]N(3)[AT]T-3', and also to some TPA response elements (TRE) (By similarity). Isoform 2 is involved in controlling the production of interleukin-6.

Mus musculus (taxid: 10090)

>sp|Q9R1S4|XBP1_RAT X-box-binding protein 1 OS=Rattus norvegicus GN=Xbp1 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 46/69 (66%), Gaps = 8/69 (11%)

Query: 77  RKRGR-SPADKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLST 135
           RKR R +    E K L+R L+NRV+AQ AR+RKKA ++ELE +V DLE +N +       
Sbjct: 52  RKRQRLTHLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEENQK------- 104

Query: 136 LQNENQMLR 144
           LQ ENQ+LR
Sbjct: 105 LQLENQLLR 113

Transcription factor essential for hepatocyte growth, the differentiation of plasma cells, the immunoglobulin secretion, and the unfolded protein response (UPR). Acts during endoplasmic reticulum stress (ER) by activating unfolded protein response (UPR) target genes via direct binding to the UPR element (UPRE). Binds DNA preferably to the CRE-like element 5'-GATGACGTG[TG]N(3)[AT]T-3', and also to some TPA response elements (TRE).

Rattus norvegicus (taxid: 10116)

>sp|Q3SZZ2|XBP1_BOVIN X-box-binding protein 1 OS=Bos taurus GN=XBP1 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 60/108 (55%), Gaps = 16/108 (14%)

Query: 46  IGGEPGGT--SASGREL-VSTGG-----PDRVQQLGEGQRKRGR-SPADKENKRLKRLLR 96
           + G+P  T  + +GR L V   G     P+    +    RKR R +    E K L+R L+
Sbjct: 20  LSGQPAATGGAPAGRALPVMVPGQQGASPEGASGVPPQARKRQRLTHLSPEEKALRRKLK 79

Query: 97  NRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLR 144
           NRV+AQ AR+RKKA ++ELE +V DLE +N +       L  ENQ+LR
Sbjct: 80  NRVAAQTARDRKKARMSELEQQVVDLEEENQK-------LLLENQLLR 120

Transcription factor essential for hepatocyte growth, the differentiation of plasma cells, the immunoglobulin secretion, and the unfolded protein response (UPR). Acts during endoplasmic reticulum stress (ER) by activating unfolded protein response (UPR) target genes via direct binding to the UPR element (UPRE). Binds DNA preferably to the CRE-like element 5'-GATGACGTG[TG]N(3)[AT]T-3', and also to some TPA response elements (TRE). Binds to the HLA DR-alpha promoter.

Bos taurus (taxid: 9913)

>sp|P17861|XBP1_HUMAN X-box-binding protein 1 OS=Homo sapiens GN=XBP1 PE=2 SV=2

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 8/69 (11%)

Query: 77  RKRGR-SPADKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLST 135
           RKR R +    E K L+R L+NRV+AQ AR+RKKA ++ELE +V DLE +N +L      
Sbjct: 59  RKRQRLTHLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEENQKLLL---- 114

Query: 136 LQNENQMLR 144
              ENQ+LR
Sbjct: 115 ---ENQLLR 120

Transcription factor essential for hepatocyte growth, the differentiation of plasma cells, the immunoglobulin secretion, and the unfolded protein response (UPR). Acts during endoplasmic reticulum stress (ER) by activating unfolded protein response (UPR) target genes via direct binding to the UPR element (UPRE). Binds DNA preferably to the CRE-like element 5'-GATGACGTG[TG]N(3)[AT]T-3', and also to some TPA response elements (TRE). Binds to the HLA DR-alpha promoter. Binds to the Tax-responsive element (TRE) of HTLV-I.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
255548962	169	transcription factor hy5, putative [Rici	0.994	0.988	0.864	1e-64
224141881	168	predicted protein [Populus trichocarpa]	0.988	0.988	0.863	3e-64
147844008	169	hypothetical protein VITISV_024883 [Viti	1.0	0.994	0.869	7e-64
224089199	169	predicted protein [Populus trichocarpa]	0.988	0.982	0.846	1e-62
427191153	164	bZIP transcription factor [Malus x domes	0.976	1.0	0.842	2e-58
449441922	158	PREDICTED: transcription factor HY5-like	0.934	0.993	0.885	7e-58
297811237	167	hypothetical protein ARALYDRAFT_909087 [	0.988	0.994	0.781	1e-53
18416509	168	transcription factor HY5 [Arabidopsis th	0.994	0.994	0.786	2e-51
350537753	158	transcription factor HY5 [Solanum lycope	0.892	0.949	0.823	5e-51
163954869	181	DBtag [eukaryotic synthetic construct]	0.994	0.922	0.786	6e-51

>gi|255548962|ref|XP_002515537.1| transcription factor hy5, putative [Ricinus communis] gi|223545481|gb|EEF46986.1| transcription factor hy5, putative [Ricinus communis]

 Score =  251 bits (640), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 147/170 (86%), Positives = 153/170 (90%), Gaps = 3/170 (1%)

Query: 1   MQEQATSSIAASSLPSSSERSSSSALHLEVKEGMESDEEIRRVPEIGGEPGGTSASGREL 60
           MQEQA+SSIAA+SLPSSSERSSSSAL LEVKEGMESDEEIRRVPE GGE  GTSASGR+ 
Sbjct: 1   MQEQASSSIAANSLPSSSERSSSSALQLEVKEGMESDEEIRRVPEFGGEQAGTSASGRDA 60

Query: 61  VSTGGPDRVQQLGEGQ--RKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLNELETR 118
            S  G DRVQ  GEGQ  RKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLNELETR
Sbjct: 61  SSVAGRDRVQAPGEGQTPRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLNELETR 120

Query: 119 VKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRGGSGGDTNADGSF 168
           VKDLE+KNSEL+ERLSTLQNENQMLRHILKNTTASRRGGS  +TN DGS 
Sbjct: 121 VKDLEKKNSELEERLSTLQNENQMLRHILKNTTASRRGGS-SNTNGDGSL 169

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141881|ref|XP_002324289.1| predicted protein [Populus trichocarpa] gi|222865723|gb|EEF02854.1| predicted protein [Populus trichocarpa]

 Score =  249 bits (635), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 146/169 (86%), Positives = 151/169 (89%), Gaps = 3/169 (1%)

Query: 1   MQEQATSSIAASSLPSSSERSSSSALHLEVKEGMESDEEIRRVPEIGGEPGGTSASGREL 60
           MQEQ TSSI A+SLPSSSERSSSSA  LEVKEGMESDEEIRRVPE+ GEP GTSASGRE 
Sbjct: 1   MQEQTTSSIPANSLPSSSERSSSSAPQLEVKEGMESDEEIRRVPEMSGEPAGTSASGRET 60

Query: 61  VSTGGPDRVQQLGEGQ--RKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLNELETR 118
            S  GPDRVQ  GEGQ  RKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYL ELETR
Sbjct: 61  GSNAGPDRVQPTGEGQSQRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLTELETR 120

Query: 119 VKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRGGSGGDTNADGS 167
           VKDLE+KNSEL+ERLSTLQNENQMLR ILKNTTASR+GGS G TNADGS
Sbjct: 121 VKDLEKKNSELEERLSTLQNENQMLRQILKNTTASRKGGSSG-TNADGS 168

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147844008|emb|CAN83322.1| hypothetical protein VITISV_024883 [Vitis vinifera] gi|296082014|emb|CBI21019.3| unnamed protein product [Vitis vinifera]

 Score =  248 bits (633), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 147/169 (86%), Positives = 153/169 (90%), Gaps = 1/169 (0%)

Query: 1   MQEQATSSIAASSLPSSSERSSSSALHLEVKEGMESDEEIRRVPEIG-GEPGGTSASGRE 59
           MQEQATSS+AASSLPSSSERSSSSAL  EVKEGMESDEEIRRVPEIG G+P G SASGRE
Sbjct: 1   MQEQATSSLAASSLPSSSERSSSSALQAEVKEGMESDEEIRRVPEIGSGDPAGPSASGRE 60

Query: 60  LVSTGGPDRVQQLGEGQRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLNELETRV 119
                GPDRVQ  G+GQRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLNELE RV
Sbjct: 61  AALVAGPDRVQASGDGQRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLNELEVRV 120

Query: 120 KDLERKNSELDERLSTLQNENQMLRHILKNTTASRRGGSGGDTNADGSF 168
           KDLERKNSEL+ERLSTLQNENQMLRHILKNTTASRRGGS  ++NADGS 
Sbjct: 121 KDLERKNSELEERLSTLQNENQMLRHILKNTTASRRGGSSNNSNADGSL 169

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089199|ref|XP_002308656.1| predicted protein [Populus trichocarpa] gi|222854632|gb|EEE92179.1| predicted protein [Populus trichocarpa]

 Score =  244 bits (622), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 143/169 (84%), Positives = 147/169 (86%), Gaps = 3/169 (1%)

Query: 1   MQEQATSSIAASSLPSSSERSSSSALHLEVKEGMESDEEIRRVPEIGGEPGGTSASGREL 60
           MQEQA SSI A S PSSSERSSSSA  LEVKEGMESDEEIRRVPE+ GEP GTSASGRE 
Sbjct: 1   MQEQAASSIPAYSFPSSSERSSSSAPQLEVKEGMESDEEIRRVPEMSGEPAGTSASGRET 60

Query: 61  VSTGGPDRVQQLGEGQ--RKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLNELETR 118
            S  GP RVQ  GEGQ  RKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYL ELETR
Sbjct: 61  GSIAGPGRVQPAGEGQSQRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLTELETR 120

Query: 119 VKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRGGSGGDTNADGS 167
           VKDLE+KNSEL+E+LSTLQNENQMLRHILKNTTASRRGGS    NADGS
Sbjct: 121 VKDLEKKNSELEEKLSTLQNENQMLRHILKNTTASRRGGS-NSANADGS 168

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|427191153|dbj|BAM71071.1| bZIP transcription factor [Malus x domestica]

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 139/165 (84%), Positives = 146/165 (88%), Gaps = 1/165 (0%)

Query: 1   MQEQATSSIAASSLPSSSERSSSSALHLEVKEGMESDEEIRRVPEIGGEPGGTSASGREL 60
           MQEQATSS+AASSLPSSSERSSSSA HLEVKEGMESDEEI RVPEIGGE  G SAS RE 
Sbjct: 1   MQEQATSSLAASSLPSSSERSSSSAFHLEVKEGMESDEEIGRVPEIGGESAGASASAREN 60

Query: 61  VSTGGPDRVQQLGEGQRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLNELETRVK 120
               GPD+VQ  GE QRKRGR+PADKE+KRLKRLLRNRVSAQQARERKKAYLN+LE RVK
Sbjct: 61  GLLAGPDQVQTAGESQRKRGRNPADKESKRLKRLLRNRVSAQQARERKKAYLNDLEVRVK 120

Query: 121 DLERKNSELDERLSTLQNENQMLRHILKNTTASRRGGSGGDTNAD 165
           +LE+KNSELDERLSTLQNENQMLRHILKNTTASRRG  GG  NAD
Sbjct: 121 ELEQKNSELDERLSTLQNENQMLRHILKNTTASRRGADGG-ANAD 164

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441922|ref|XP_004138731.1| PREDICTED: transcription factor HY5-like [Cucumis sativus] gi|323099915|gb|ADX23549.1| bZIP2 [Cucumis melo]

 Score =  228 bits (581), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 139/157 (88%), Positives = 144/157 (91%)

Query: 1   MQEQATSSIAASSLPSSSERSSSSALHLEVKEGMESDEEIRRVPEIGGEPGGTSASGREL 60
           MQEQATSS AASSLPSSSERSSSSALHLEVKEGMESDEEIRRVPEIGGE  GTSASGR+ 
Sbjct: 1   MQEQATSSAAASSLPSSSERSSSSALHLEVKEGMESDEEIRRVPEIGGESAGTSASGRDT 60

Query: 61  VSTGGPDRVQQLGEGQRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLNELETRVK 120
            S  GPDRVQ   EGQRKRGRSPADKE+KRLKRLLRNRVSAQQARERKKAYLN+LE RVK
Sbjct: 61  GSVAGPDRVQVSREGQRKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLNDLEIRVK 120

Query: 121 DLERKNSELDERLSTLQNENQMLRHILKNTTASRRGG 157
           DLE+KNSEL+ERLSTLQNENQMLR ILKNTTASRR G
Sbjct: 121 DLEKKNSELEERLSTLQNENQMLRQILKNTTASRRSG 157

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811237|ref|XP_002873502.1| hypothetical protein ARALYDRAFT_909087 [Arabidopsis lyrata subsp. lyrata] gi|297319339|gb|EFH49761.1| hypothetical protein ARALYDRAFT_909087 [Arabidopsis lyrata subsp. lyrata]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 132/169 (78%), Positives = 145/169 (85%), Gaps = 3/169 (1%)

Query: 1   MQEQATSSIAASSLPSSSERSSSSALHLEVKEGMESDEEIRRVPEIGGEPGGTSASGREL 60
           MQEQATSS+AASSLPSSSERSSSSA HLE+KEG+ESDEEIRRVPE GGE  G   +GRE 
Sbjct: 1   MQEQATSSLAASSLPSSSERSSSSAPHLEIKEGIESDEEIRRVPEFGGEAAGKETTGRES 60

Query: 61  VSTGGPDRVQQ-LGEGQRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLNELETRV 119
            S  G +R Q  +GE QRKRGR+PA+KENKRLKRLLRNRVSAQQARERKKAYL+ELE RV
Sbjct: 61  GSATGQERTQTAVGESQRKRGRTPAEKENKRLKRLLRNRVSAQQARERKKAYLSELENRV 120

Query: 120 KDLERKNSELDERLSTLQNENQMLRHILKNTTASRRGGSGGDTNADGSF 168
           KDLE KNSEL+ERLSTLQNENQMLRHILKNTT ++RGG G  +NAD S 
Sbjct: 121 KDLENKNSELEERLSTLQNENQMLRHILKNTTGNKRGGGG--SNADASL 167

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416509|ref|NP_568246.1| transcription factor HY5 [Arabidopsis thaliana] gi|20138463|sp|O24646.1|HY5_ARATH RecName: Full=Transcription factor HY5; AltName: Full=Protein LONG HYPOCOTYL 5; AltName: Full=bZIP transcription factor 56; Short=AtbZIP56 gi|2244709|dbj|BAA21116.1| HY5 [Arabidopsis thaliana] gi|2251085|dbj|BAA21327.1| HY5 [Arabidopsis thaliana] gi|8953388|emb|CAB96661.1| HY5 [Arabidopsis thaliana] gi|98960907|gb|ABF58937.1| At5g11260 [Arabidopsis thaliana] gi|110738599|dbj|BAF01225.1| bZip transcription factor HY5 / AtbZip56 [Arabidopsis thaliana] gi|332004270|gb|AED91653.1| transcription factor HY5 [Arabidopsis thaliana]

 Score =  206 bits (524), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 133/169 (78%), Positives = 145/169 (85%), Gaps = 2/169 (1%)

Query: 1   MQEQATSSIAASSLPSSSERSSSSALHLEVKEGMESDEEIRRVPEIGGEPGGTSASGREL 60
           MQEQATSS+AASSLPSSSERSSSSA HLE+KEG+ESDEEIRRVPE GGE  G   SGRE 
Sbjct: 1   MQEQATSSLAASSLPSSSERSSSSAPHLEIKEGIESDEEIRRVPEFGGEAVGKETSGRES 60

Query: 61  VSTGGPDRVQ-QLGEGQRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLNELETRV 119
            S  G +R Q  +GE QRKRGR+PA+KENKRLKRLLRNRVSAQQARERKKAYL+ELE RV
Sbjct: 61  GSATGQERTQATVGESQRKRGRTPAEKENKRLKRLLRNRVSAQQARERKKAYLSELENRV 120

Query: 120 KDLERKNSELDERLSTLQNENQMLRHILKNTTASRRGGSGGDTNADGSF 168
           KDLE KNSEL+ERLSTLQNENQMLRHILKNTT ++R G GG +NAD S 
Sbjct: 121 KDLENKNSELEERLSTLQNENQMLRHILKNTTGNKR-GGGGGSNADASL 168

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350537753|ref|NP_001234820.1| transcription factor HY5 [Solanum lycopersicum] gi|55976204|sp|Q9SM50.1|HY5_SOLLC RecName: Full=Transcription factor HY5; AltName: Full=LeHY5; AltName: Full=tHY5 gi|6018699|emb|CAB57979.1| THY5 protein [Solanum lycopersicum]

 Score =  205 bits (522), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 126/153 (82%), Positives = 135/153 (88%), Gaps = 3/153 (1%)

Query: 1   MQEQATSSIAASSLPSSSERSSSSALHLEVKEGMESDEEIRRVPEIGGEPGGT-SASGRE 59
           MQEQATSSIAASSLPSSSERSSSSALH E+KEGMESD+EIRRVPE+GGE  GT SASGR+
Sbjct: 1   MQEQATSSIAASSLPSSSERSSSSALHHELKEGMESDDEIRRVPEMGGEATGTTSASGRD 60

Query: 60  LVSTGGPDRVQQLGEGQRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLNELETRV 119
            VS  G  + Q     QRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYL +LE RV
Sbjct: 61  GVSAAG--QAQPSAGTQRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLIDLEARV 118

Query: 120 KDLERKNSELDERLSTLQNENQMLRHILKNTTA 152
           K+LE KN+EL+ERLSTLQNENQMLRHILKNTTA
Sbjct: 119 KELETKNAELEERLSTLQNENQMLRHILKNTTA 151

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|163954869|dbj|BAF96503.1| DBtag [eukaryotic synthetic construct]

 Score =  205 bits (521), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 133/169 (78%), Positives = 145/169 (85%), Gaps = 2/169 (1%)

Query: 1   MQEQATSSIAASSLPSSSERSSSSALHLEVKEGMESDEEIRRVPEIGGEPGGTSASGREL 60
           MQEQATSS+AASSLPSSSERSSSSA HLE+KEG+ESDEEIRRVPE GGE  G   SGRE 
Sbjct: 1   MQEQATSSLAASSLPSSSERSSSSAPHLEIKEGIESDEEIRRVPEFGGEAVGKETSGRES 60

Query: 61  VSTGGPDRVQ-QLGEGQRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLNELETRV 119
            S  G +R Q  +GE QRKRGR+PA+KENKRLKRLLRNRVSAQQARERKKAYL+ELE RV
Sbjct: 61  GSATGQERTQATVGESQRKRGRTPAEKENKRLKRLLRNRVSAQQARERKKAYLSELENRV 120

Query: 120 KDLERKNSELDERLSTLQNENQMLRHILKNTTASRRGGSGGDTNADGSF 168
           KDLE KNSEL+ERLSTLQNENQMLRHILKNTT ++R G GG +NAD S 
Sbjct: 121 KDLENKNSELEERLSTLQNENQMLRHILKNTTGNKR-GGGGGSNADASL 168

Source: eukaryotic synthetic construct

Species: eukaryotic synthetic construct

Genus: N/A

Family: N/A

Order: N/A

Class: N/A

Phylum: N/A

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
TAIR|locus:2148007	168	HY5 "ELONGATED HYPOCOTYL 5" [A	0.988	0.988	0.613	2.3e-46
TAIR|locus:1005716533	149	HYH "AT3G17609" [Arabidopsis t	0.690	0.778	0.445	1.9e-19
UNIPROTKB|A2VD01	525	creb3l2 "Cyclic AMP-responsive	0.345	0.110	0.362	5.6e-06
UNIPROTKB|F1P1J2	488	CREB3L2 "Uncharacterized prote	0.345	0.118	0.344	5.9e-06
DICTYBASE|DDB_G0279529	631	bzpF "putative basic-leucine z	0.398	0.106	0.381	3.8e-05
UNIPROTKB|F1NAC0	262	XBP1 "Uncharacterized protein"	0.541	0.347	0.343	4.2e-05
RGD|1303073	267	Xbp1 "X-box binding protein 1"	0.529	0.333	0.355	4.4e-05
UNIPROTKB|Q3SZZ2	261	XBP1 "X-box-binding protein 1"	0.583	0.375	0.353	5.4e-05
MGI|MGI:98970	267	Xbp1 "X-box binding protein 1"	0.529	0.333	0.355	5.7e-05
UNIPROTKB|F1PET1	381	XBP1 "Uncharacterized protein"	0.648	0.286	0.330	8.3e-05

TAIR|locus:2148007 HY5 "ELONGATED HYPOCOTYL 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 103/168 (61%), Positives = 114/168 (67%)

Query:     1 MQEQXXXXXXXXXXXXXXXXXXXXXLHLEVKEGMESDEEIRRVPEIGGEPGGTSASGREL 60
             MQEQ                      HLE+KEG+ESDEEIRRVPE GGE  G   SGRE 
Sbjct:     1 MQEQATSSLAASSLPSSSERSSSSAPHLEIKEGIESDEEIRRVPEFGGEAVGKETSGRES 60

Query:    61 VSTGGPDRVQQ-LGEGQRKRGRSPADKEXXXXXXXXXXXVSAQQARERKKAYLNELETRV 119
              S  G +R Q  +GE QRKRGR+PA+KE           VSAQQARERKKAYL+ELE RV
Sbjct:    61 GSATGQERTQATVGESQRKRGRTPAEKENKRLKRLLRNRVSAQQARERKKAYLSELENRV 120

Query:   120 KDLERKNSELDERLSTLQNENQMLRHILKNTTASRRGGSGGDTNADGS 167
             KDLE KNSEL+ERLSTLQNENQMLRHILKNTT ++RGG GG +NAD S
Sbjct:   121 KDLENKNSELEERLSTLQNENQMLRHILKNTTGNKRGGGGG-SNADAS 167

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;RCA;TAS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009640 "photomorphogenesis" evidence=TAS

GO:0010224 "response to UV-B" evidence=IEP;IGI;IMP

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0010114 "response to red light" evidence=IEP

GO:0010218 "response to far red light" evidence=IEP

GO:0031539 "positive regulation of anthocyanin metabolic process" evidence=IMP

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=IMP

GO:0010099 "regulation of photomorphogenesis" evidence=IMP

GO:0003690 "double-stranded DNA binding" evidence=IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0080167 "response to karrikin" evidence=IEP

GO:0042753 "positive regulation of circadian rhythm" evidence=IMP

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010074 "maintenance of meristem identity" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0051276 "chromosome organization" evidence=RCA

TAIR|locus:1005716533 HYH "AT3G17609" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 53/119 (44%), Positives = 73/119 (61%)

Query:    35 ESDEEIRRVP--EIGGEPGGTSASGRELVSTGGPDRVQQ-LGEGQRKRGRSPADKEXXXX 91
             ESDEE+  VP  E  G     S+S  + V+    D+ Q  +   +R+RGR+P DKE    
Sbjct:    23 ESDEELLMVPDMEAAGSTCVLSSSADDGVNNPELDQTQNGVSTAKRRRGRNPVDKEYRSL 82

Query:    92 XXXXXXXVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT 150
                    VSAQQARERKK Y+++LE+R  +L+  N +L+E++STL NEN MLR +L NT
Sbjct:    83 KRLLRNRVSAQQARERKKVYVSDLESRANELQNNNDQLEEKISTLTNENTMLRKMLINT 141

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0010224 "response to UV-B" evidence=IEP

GO:0080167 "response to karrikin" evidence=IEP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

UNIPROTKB|A2VD01 creb3l2 "Cyclic AMP-responsive element-binding protein 3-like protein 2" [Xenopus laevis (taxid:8355)]

 Score = 102 (41.0 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
 Identities = 21/58 (36%), Positives = 37/58 (63%)

Query:    99 VSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRG 156
             +SAQ++R +KK Y++ LE RV++   +NSEL +++  L++ N+ L   L+   A   G
Sbjct:   311 ISAQESRRKKKEYMDSLEKRVENSSSENSELRKKVEVLESTNRTLLQQLQRLQAMVTG 368

GO:0002062 "chondrocyte differentiation" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0034976 "response to endoplasmic reticulum stress" evidence=ISS

GO:0044212 "transcription regulatory region DNA binding" evidence=ISS

GO:0051216 "cartilage development" evidence=ISS

UNIPROTKB|F1P1J2 CREB3L2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 101 (40.6 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
 Identities = 20/58 (34%), Positives = 37/58 (63%)

Query:    99 VSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRG 156
             +SAQ++R +KK Y++ LE +V++   +NSEL +++  L++ N+ L   L+   A   G
Sbjct:   271 ISAQESRRKKKEYMDSLEKKVENCSNENSELRKKVEVLESTNRTLLQQLQRLQAMVAG 328

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0002062 "chondrocyte differentiation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0034976 "response to endoplasmic reticulum stress" evidence=IEA

GO:0035497 "cAMP response element binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

DICTYBASE|DDB_G0279529 bzpF "putative basic-leucine zipper (bZIP) transcription factor" [Dictyostelium discoideum (taxid:44689)]

 Score = 108 (43.1 bits), Expect = 3.8e-05, P = 3.8e-05
 Identities = 29/76 (38%), Positives = 43/76 (56%)

Query:   100 SAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRH---ILKN--TTASR 154
             +AQ  R+R+KAY+ +LE +V DL   NSE   R+  L +EN+++R     L+N  T A  
Sbjct:   418 AAQLFRQRQKAYIQDLEKKVSDLTGTNSEFRARVELLNSENKLIREQLLYLRNFVTQAVS 477

Query:   155 ----RGGSGGDTNADG 166
                 +GGS G  +  G
Sbjct:   478 FSFPKGGSNGTNSPSG 493

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1NAC0 XBP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 102 (41.0 bits), Expect = 4.2e-05, P = 4.2e-05
 Identities = 35/102 (34%), Positives = 50/102 (49%)

Query:    54 SASGREL--VSTGG--PDRVQQLGEGQRKRGRSPADKEXXXXXXXXXXXVSAQQARERKK 109
             SA+GR L  V   G  PD  +     ++++  +    E           V+AQ AR+RKK
Sbjct:    27 SAAGRRLSVVLPAGAAPDPAEAPPPARKRQRLTHLTPEEKALRRKLKNRVAAQSARDRKK 86

Query:   110 AYLNELETRVKDLE-------RKNSELDERLSTLQNENQMLR 144
             A + ELE +V +LE       R+N  L E+  +L  ENQ LR
Sbjct:    87 ARMTELEQQVVELEEENQRLLRENQRLREQTGSLSLENQELR 128

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0031017 "exocrine pancreas development" evidence=IEA

GO:0060691 "epithelial cell maturation involved in salivary gland development" evidence=IEA

GO:1900103 "positive regulation of endoplasmic reticulum unfolded protein response" evidence=IEA

RGD|1303073 Xbp1 "X-box binding protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 102 (41.0 bits), Expect = 4.4e-05, P = 4.4e-05
 Identities = 37/104 (35%), Positives = 51/104 (49%)

Query:    46 IGGEPGGTSASGREL-VSTGGPDRVQQLGEGQ---RKRGR-SPADKEXXXXXXXXXXXVS 100
             + G+P   ++ GR L +   GP        G    RKR R +    E           V+
Sbjct:    20 LSGQP---ASGGRALPLMVPGPRAAGSEASGTPQARKRQRLTHLSPEEKALRRKLKNRVA 76

Query:   101 AQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLR 144
             AQ AR+RKKA ++ELE +V DLE +N +L       Q ENQ+LR
Sbjct:    77 AQTARDRKKARMSELEQQVVDLEEENQKL-------QLENQLLR 113

GO:0002070 "epithelial cell maturation" evidence=ISO

GO:0003677 "DNA binding" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IDA;TAS

GO:0005634 "nucleus" evidence=ISO;IDA;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IDA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IDA

GO:0031017 "exocrine pancreas development" evidence=IEA;ISO

GO:0042493 "response to drug" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0051602 "response to electrical stimulus" evidence=IDA

GO:0060096 "serotonin secretion, neurotransmission" evidence=IDA

GO:0060691 "epithelial cell maturation involved in salivary gland development" evidence=IEA;ISO

GO:1900103 "positive regulation of endoplasmic reticulum unfolded protein response" evidence=IEA;ISO

UNIPROTKB|Q3SZZ2 XBP1 "X-box-binding protein 1" [Bos taurus (taxid:9913)]

 Score = 101 (40.6 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 40/113 (35%), Positives = 53/113 (46%)

Query:    47 GGEPGGTS----ASGRELVSTGGPDRVQ-QLGEGQRKRGRSPADKEXXXXXXXXXXXVSA 101
             GG P G +      G++  S  G   V  Q  + QR    SP +K            V+A
Sbjct:    28 GGAPAGRALPVMVPGQQGASPEGASGVPPQARKRQRLTHLSPEEK---ALRRKLKNRVAA 84

Query:   102 QQARERKKAYLNELETRVKDLERKNSEL-------DERLSTLQNENQMLRHIL 147
             Q AR+RKKA ++ELE +V DLE +N +L        E+   L  ENQ LR  L
Sbjct:    85 QTARDRKKARMSELEQQVVDLEEENQKLLLENQLLREKTHGLVVENQELRQRL 137

GO:0005634 "nucleus" evidence=IEA

GO:1900103 "positive regulation of endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0060691 "epithelial cell maturation involved in salivary gland development" evidence=IEA

GO:0031017 "exocrine pancreas development" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

MGI|MGI:98970 Xbp1 "X-box binding protein 1" [Mus musculus (taxid:10090)]

 Score = 101 (40.6 bits), Expect = 5.7e-05, P = 5.7e-05
 Identities = 37/104 (35%), Positives = 51/104 (49%)

Query:    46 IGGEPGGTSASGREL-VSTGGPDRVQQLGEGQ---RKRGR-SPADKEXXXXXXXXXXXVS 100
             + G+P   ++ GR L +   GP        G    RKR R +    E           V+
Sbjct:    20 LSGQP---ASGGRALPLMVPGPRAAGSEASGTPQARKRQRLTHLSPEEKALRRKLKNRVA 76

Query:   101 AQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLR 144
             AQ AR+RKKA ++ELE +V DLE +N +L       Q ENQ+LR
Sbjct:    77 AQTARDRKKARMSELEQQVVDLEEENHKL-------QLENQLLR 113

GO:0002070 "epithelial cell maturation" evidence=IMP

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISO

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=ISO

GO:0031017 "exocrine pancreas development" evidence=IMP

GO:0042493 "response to drug" evidence=ISO

GO:0043565 "sequence-specific DNA binding" evidence=ISO

GO:0051602 "response to electrical stimulus" evidence=ISO

GO:0060096 "serotonin secretion, neurotransmission" evidence=ISO

GO:0060691 "epithelial cell maturation involved in salivary gland development" evidence=IMP

GO:1900103 "positive regulation of endoplasmic reticulum unfolded protein response" evidence=ISO

UNIPROTKB|F1PET1 XBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 102 (41.0 bits), Expect = 8.3e-05, P = 8.3e-05
 Identities = 41/124 (33%), Positives = 56/124 (45%)

Query:    50 PGGTSASGRELVSTGGPDRVQQLGEGQRKRGRSPADKEXXXXXXXXXXXVSAQQARERKK 109
             PG   AS       GGP + ++    QR    SP +K            V+AQ AR+RKK
Sbjct:    43 PGPRGASPE--APCGGPPQARKR---QRLTHLSPEEK---ALRRKLKNRVAAQTARDRKK 94

Query:   110 AYLNELETRVKDLERKNSEL-------DERLSTLQNENQMLRHILKNTTASRRGGSGGDT 162
             A ++ELE +V DLE +N +L        E+   L  ENQ LR  L   T +    +   T
Sbjct:    95 ARMSELEQQVVDLEEENQKLLLENQLLREKTHGLVVENQELRQRLGMDTLATEEEAETQT 154

Query:   163 NADG 166
               +G
Sbjct:   155 KGNG 158

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O24646	HY5_ARATH	No assigned EC number	0.7869	0.9940	0.9940	yes	no
Q9SM50	HY5_SOLLC	No assigned EC number	0.8235	0.8928	0.9493	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_XVIII000127 hypothetical protein (168 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	168
smart00338	65	smart00338, BRLZ, basic region leucin zipper	1e-10
pfam00170	64	pfam00170, bZIP_1, bZIP transcription factor	4e-08
pfam07716	54	pfam07716, bZIP_2, Basic region leucine zipper	4e-06
cd12193	54	cd12193, B_zip1, basic leucine zipper DNA-binding	5e-04

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score = 54.1 bits (131), Expect = 1e-10
 Identities = 25/63 (39%), Positives = 42/63 (66%)

Query: 86  KENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRH 145
           ++ KR +R  RNR +A+++RERKKA + ELE +V+ LE +N  L + +  L+ E + L+ 
Sbjct: 2   EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61

Query: 146 ILK 148
            L+
Sbjct: 62  ELE 64

Length = 65

>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor

 Score = 47.3 bits (113), Expect = 4e-08
 Identities = 27/64 (42%), Positives = 41/64 (64%)

Query: 85  DKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLR 144
           +KE KR +R  +NR +A+++R RKKAY+ ELE +VK+LE +N  L   L  L+ E   L+
Sbjct: 1   EKELKRERRRQKNREAARRSRLRKKAYIEELEEKVKELEAENKTLRSELERLKKECAKLK 60

Query: 145 HILK 148
              +
Sbjct: 61  SENE 64

The Pfam entry includes the basic region and the leucine zipper region. Length = 64

>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper

 Score = 41.8 bits (99), Expect = 4e-06
 Identities = 21/54 (38%), Positives = 37/54 (68%)

Query: 86  KENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNE 139
           K+++   R  RN  +A+++RE+KK    ELE RVK+LE +N++L +++  L+ E
Sbjct: 1   KDDEYRDRRRRNNEAARRSREKKKQREEELEERVKELEEENAQLRQKVEQLEKE 54

Length = 54

>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and multimerization region of GCN4 and related proteins

 Score = 36.1 bits (84), Expect = 5e-04
 Identities = 16/52 (30%), Positives = 33/52 (63%)

Query: 89  KRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNEN 140
            R ++  RNR +A+++R RK   + +LE +V++L  +NS+L++ +  L+   
Sbjct: 2   PRARKRARNREAARRSRARKMERMKQLEDKVEELTSENSDLEDEVDRLKKAL 53

Basic leucine zipper (bZIP) transcription factors act in networks of homo- and hetero-dimers in the regulation in a diverse set of cellular pathways. Classical leucine zippers have alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization creates a pair of basic regions that bind DNA and undergo conformational change. GCN4 was identified in Saccharomyces cerevisiae from mutations in a deficiency in activation with the general amino acid control pathway. GCN4 encodes a trans-activator of amino acid biosynthetic genes containing 2 acidic activation domains and a C-terminal bZIP domain, comprised of a basic alpha-helical DNA-binding region and a coiled-coil dimerization region. Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
smart00338	65	BRLZ basic region leucin zipper.	99.64
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	99.56
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	99.36
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	99.33
KOG3584	348	consensus cAMP response element binding protein an	99.31
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	99.27
KOG4571	294	consensus Activating transcription factor 4 [Trans	99.26
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	99.03
KOG3119	269	consensus Basic region leucine zipper transcriptio	98.91
KOG0837	279	consensus Transcriptional activator of the JUN fam	98.62
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	98.49
KOG3863	604	consensus bZIP transcription factor NRF1 [Transcri	98.0
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	97.88
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	97.76
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	96.71
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	95.08
PRK00736	68	hypothetical protein; Provisional	95.02
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	94.94
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	94.77
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	94.74
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	94.73
PRK00295	68	hypothetical protein; Provisional	94.72
PRK04325	74	hypothetical protein; Provisional	94.72
PRK04406	75	hypothetical protein; Provisional	94.65
PRK02119	73	hypothetical protein; Provisional	94.65
PRK02793	72	phi X174 lysis protein; Provisional	94.39
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	93.63
PRK00846	77	hypothetical protein; Provisional	93.2
PRK10884	206	SH3 domain-containing protein; Provisional	93.06
PRK13169	110	DNA replication intiation control protein YabA; Re	93.06
PF10226	195	DUF2216: Uncharacterized conserved proteins (DUF22	92.97
PRK15422	79	septal ring assembly protein ZapB; Provisional	92.88
PRK13922	276	rod shape-determining protein MreC; Provisional	92.62
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	92.54
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	92.41
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	92.4
PF15058	200	Speriolin_N: Speriolin N terminus	91.93
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	91.46
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	91.3
COG2433	652	Uncharacterized conserved protein [Function unknow	91.27
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	91.19
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	91.16
PF12709	87	Kinetocho_Slk19: Central kinetochore-associated; I	90.94
PRK00888	105	ftsB cell division protein FtsB; Reviewed	90.93
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	90.87
TIGR00219	283	mreC rod shape-determining protein MreC. MreC (mur	90.69
PRK13169	110	DNA replication intiation control protein YabA; Re	90.58
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	90.31
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	89.94
PF12808	52	Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2	89.88
KOG3119	269	consensus Basic region leucine zipper transcriptio	89.73
PF11365	96	DUF3166: Protein of unknown function (DUF3166); In	89.36
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	89.31
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	88.85
PRK09413	121	IS2 repressor TnpA; Reviewed	88.7
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	88.18
PF04880	166	NUDE_C: NUDE protein, C-terminal conserved region;	88.15
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	88.03
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	87.87
PF03670	83	UPF0184: Uncharacterised protein family (UPF0184);	87.8
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	87.72
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	87.68
PRK14127	109	cell division protein GpsB; Provisional	87.59
PRK00888	105	ftsB cell division protein FtsB; Reviewed	87.57
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	87.56
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	87.3
KOG3335	181	consensus Predicted coiled-coil protein [General f	87.28
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	87.08
PF03980	109	Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essent	87.04
PRK00736	68	hypothetical protein; Provisional	86.84
PF10226	195	DUF2216: Uncharacterized conserved proteins (DUF22	86.74
PF06216	389	RTBV_P46: Rice tungro bacilliform virus P46 protei	86.66
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	86.57
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	86.57
PRK04325	74	hypothetical protein; Provisional	86.51
PF14775	60	NYD-SP28_assoc: Sperm tail C-terminal domain	86.36
COG4026	290	Uncharacterized protein containing TOPRIM domain,	86.22
PRK02793	72	phi X174 lysis protein; Provisional	85.97
PF11500	152	Cut12: Spindle pole body formation-associated prot	85.9
PRK04406	75	hypothetical protein; Provisional	85.76
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	85.74
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	85.66
PRK02119	73	hypothetical protein; Provisional	85.51
PF05103	131	DivIVA: DivIVA protein; InterPro: IPR007793 The Ba	85.43
COG2900	72	SlyX Uncharacterized protein conserved in bacteria	85.39
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	85.17
PRK00295	68	hypothetical protein; Provisional	85.01
COG4026	290	Uncharacterized protein containing TOPRIM domain,	84.86
PF10186	302	Atg14: UV radiation resistance protein and autopha	84.74
PRK10884	206	SH3 domain-containing protein; Provisional	84.52
COG4467	114	Regulator of replication initiation timing [Replic	84.48
PF08232	134	Striatin: Striatin family; InterPro: IPR013258 Thi	83.96
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	83.8
PRK15422	79	septal ring assembly protein ZapB; Provisional	83.68
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	83.44
PF12709	87	Kinetocho_Slk19: Central kinetochore-associated; I	83.44
PRK11637	428	AmiB activator; Provisional	83.4
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	83.23
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	83.15
PF11365	96	DUF3166: Protein of unknown function (DUF3166); In	82.97
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	82.92
PRK11637	428	AmiB activator; Provisional	82.56
PF05812	118	Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro:	82.32
PF15556	252	Zwint: ZW10 interactor	82.28
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	82.26
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	81.4
PF07334	76	IFP_35_N: Interferon-induced 35 kDa protein (IFP 3	81.2
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	81.16
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	81.16
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	81.14
PRK09343	121	prefoldin subunit beta; Provisional	80.9
PRK00846	77	hypothetical protein; Provisional	80.82
PF04899	70	MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 Th	80.74
TIGR02209	85	ftsL_broad cell division protein FtsL. This model	80.69
PF07989	75	Microtub_assoc: Microtubule associated; InterPro:	80.68
smart00338	65	BRLZ basic region leucin zipper.	80.59

>smart00338 BRLZ basic region leucin zipper

Probab=99.64  E-value=2.1e-15  Score=102.76  Aligned_cols=63  Identities=40%  Similarity=0.588  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957           86 KENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK  148 (168)
Q Consensus        86 ~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~  148 (168)
                      +++++.+|+++||+||++||+||+.|+.+||.++..|+.+|..|..+|..|..|+..|++++.
T Consensus         2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~   64 (65)
T smart00338        2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE   64 (65)
T ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            457889999999999999999999999999999999999999999999999999999999874

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=99.56  E-value=3.5e-14  Score=96.53  Aligned_cols=62  Identities=45%  Similarity=0.651  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957           86 KENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHIL  147 (168)
Q Consensus        86 ~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L  147 (168)
                      ++.++.+|+++||+||++||.||+.|+.+||.+|..|+.+|..|+.++..|..++..|+..+
T Consensus         2 ~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~   63 (64)
T PF00170_consen    2 KEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN   63 (64)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            45678899999999999999999999999999999999999999999999999999998765

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=99.36  E-value=6.9e-12  Score=82.82  Aligned_cols=52  Identities=42%  Similarity=0.642  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957           87 ENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNE  139 (168)
Q Consensus        87 e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~E  139 (168)
                      +.++.+|. +||+||++||+||++++.+|+.++..|+.+|..|..+|..|+.|
T Consensus         3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E   54 (54)
T PF07716_consen    3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE   54 (54)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            45666666 99999999999999999999999999999999999999999875

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=99.33  E-value=1e-11  Score=104.37  Aligned_cols=78  Identities=38%  Similarity=0.457  Sum_probs=65.7

Q ss_pred             CCCCCCCC-CCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 030957           74 EGQRKRGR-SPADKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSE-------LDERLSTLQNENQMLRH  145 (168)
Q Consensus        74 ~~~rkr~r-~~~e~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~-------L~~~v~~L~~En~~Lr~  145 (168)
                      +++|||.| ++...|+|-.||+++||+||+.+|+|||+++.+||.++.+|+.+|..       |+++...|..+|.+|+.
T Consensus        53 ~~~rKr~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~  132 (292)
T KOG4005|consen   53 QPKRKRRRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDS  132 (292)
T ss_pred             chHHHHHhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            56677766 89999999999999999999999999999999999999998877665       55666667778888888


Q ss_pred             HHHHhc
Q 030957          146 ILKNTT  151 (168)
Q Consensus       146 ~L~~~~  151 (168)
                      .|..+.
T Consensus       133 ~le~~~  138 (292)
T KOG4005|consen  133 ELELLR  138 (292)
T ss_pred             HHHHHH
Confidence            887443

>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]

Probab=99.31  E-value=3.5e-12  Score=109.62  Aligned_cols=54  Identities=43%  Similarity=0.605  Sum_probs=48.0

Q ss_pred             CcHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957           84 ADKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQ  137 (168)
Q Consensus        84 ~e~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~  137 (168)
                      +|.-.||.-|+++||+||+.||+|||+||+|||.+|..||+.|..|-++|..|.
T Consensus       286 ee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLK  339 (348)
T KOG3584|consen  286 EEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLK  339 (348)
T ss_pred             hhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHH
Confidence            445678888999999999999999999999999999999999999877776664

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=99.27  E-value=5e-12  Score=114.10  Aligned_cols=73  Identities=33%  Similarity=0.487  Sum_probs=67.4

Q ss_pred             CcHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 030957           84 ADKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRG  156 (168)
Q Consensus        84 ~e~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~  156 (168)
                      +|..-||+||++||+++||.+|.|||+||+.||.+|.....+|.+|+.+|+.|+.+|..|-++|+.+....-.
T Consensus       246 EEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q  318 (472)
T KOG0709|consen  246 EERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQ  318 (472)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhh
Confidence            3557889999999999999999999999999999999999999999999999999999999999998864433

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=99.26  E-value=9e-11  Score=100.85  Aligned_cols=65  Identities=25%  Similarity=0.395  Sum_probs=59.7

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030957           89 KRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTAS  153 (168)
Q Consensus        89 kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~  153 (168)
                      +..|+.++|++||.|+|+||++..+.|+.++..|+.+|.+|+.++..|++|+++||+.|.++...
T Consensus       227 ~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~~  291 (294)
T KOG4571|consen  227 KLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYKK  291 (294)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44445789999999999999999999999999999999999999999999999999999887654

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=99.03  E-value=1.1e-09  Score=100.49  Aligned_cols=62  Identities=37%  Similarity=0.521  Sum_probs=53.6

Q ss_pred             CcHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957           84 ADKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus        84 ~e~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      +.+.-|+..||+|||++|..+|.|||+|+..||.+++.|.+||..       |+.||..||++|..+-.
T Consensus       276 d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~-------Lk~ENatLk~qL~~l~~  337 (655)
T KOG4343|consen  276 DIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQ-------LKKENATLKRQLDELVS  337 (655)
T ss_pred             CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhHHHHHHHHHHhh
Confidence            345678888999999999999999999999999999999999988       56677778888877654

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=98.91  E-value=3.2e-08  Score=84.54  Aligned_cols=70  Identities=24%  Similarity=0.402  Sum_probs=65.2

Q ss_pred             CCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957           83 PADKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus        83 ~~e~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      .+.++++++.|+.||.+|++++|.++|....++..++..|++||..|+.+|.+|+.|+..|++.+..+..
T Consensus       188 ~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~  257 (269)
T KOG3119|consen  188 VEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPK  257 (269)
T ss_pred             hhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3446889999999999999999999999999999999999999999999999999999999999987654

>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]

Probab=98.62  E-value=2.1e-07  Score=79.28  Aligned_cols=67  Identities=33%  Similarity=0.461  Sum_probs=59.6

Q ss_pred             HHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957           86 KENKRLKR-LLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus        86 ~e~kr~rR-~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      .+..+++| .+|||+||.+||.||-++|..||.+|..|..+|..|-..+..|.....+|++.+.+.-.
T Consensus       202 qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~hi~  269 (279)
T KOG0837|consen  202 QEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEHIH  269 (279)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455555 78999999999999999999999999999999999999999999999999999877644

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=98.49  E-value=1.2e-09  Score=79.35  Aligned_cols=64  Identities=34%  Similarity=0.484  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957           87 ENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT  150 (168)
Q Consensus        87 e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~  150 (168)
                      +.|.++|..+||.||+.||.||..++.+|+.++..|..+...|..++..|..+...|++.+..+
T Consensus        28 ~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~~~L   91 (92)
T PF03131_consen   28 ELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKLEQL   91 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5688899999999999999999999999999999988888888777777777766666655544

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]

Probab=98.00  E-value=9.8e-06  Score=75.97  Aligned_cols=63  Identities=24%  Similarity=0.382  Sum_probs=58.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957           89 KRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus        89 kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      +=+||+=+||+||+.||.||-.-|..||.+|..|.++-.+|..+-..+.++...++++|..|.
T Consensus       490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L~  552 (604)
T KOG3863|consen  490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSELY  552 (604)
T ss_pred             hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677899999999999999999999999999999999999999999999999999998775

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=97.88  E-value=0.00023  Score=55.17  Aligned_cols=77  Identities=27%  Similarity=0.307  Sum_probs=67.5

Q ss_pred             CCCCCCcH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 030957           79 RGRSPADK-ENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRR  155 (168)
Q Consensus        79 r~r~~~e~-e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~  155 (168)
                      ||-+.++- -.|..||-++||=-|+-||-|+-..-.+||.+-..|..+...|++++..+..|...|+..+..+.....
T Consensus        42 rG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~  119 (135)
T KOG4196|consen   42 RGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV  119 (135)
T ss_pred             cCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            44444333 466677889999999999999999999999999999999999999999999999999999999988765

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=97.76  E-value=2e-06  Score=76.98  Aligned_cols=81  Identities=33%  Similarity=0.383  Sum_probs=73.3

Q ss_pred             CCCCCCcHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 030957           79 RGRSPADKENKRLKRLLRNRVSAQQ---ARERKKAYLNELETRVKDLE-RKNSELDERLSTLQNENQMLRHILKNTTASR  154 (168)
Q Consensus        79 r~r~~~e~e~kr~rR~~rNR~AA~~---sR~RKk~~~~~LE~~v~~Le-~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~  154 (168)
                      ......+.+.++..|+++|++||.+   ||.+++.+...|+.+|+.|+ .+|..|..+|..|.+|+.+|...|.......
T Consensus       144 ~~~~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~~~l~~h~~~~  223 (395)
T KOG1414|consen  144 PSVLTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLEKELNTHRPPC  223 (395)
T ss_pred             CCCCCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHHHHHhccCCCc
Confidence            4445667788888999999999999   99999999999999999999 9999999999999999999999999988877


Q ss_pred             CCCCC
Q 030957          155 RGGSG  159 (168)
Q Consensus       155 ~~~~~  159 (168)
                      .+.+.
T Consensus       224 ~~~~~  228 (395)
T KOG1414|consen  224 SGNGD  228 (395)
T ss_pred             ccCCc
Confidence            76653

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=96.71  E-value=0.00063  Score=61.09  Aligned_cols=64  Identities=30%  Similarity=0.487  Sum_probs=52.9

Q ss_pred             CCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 030957           82 SPADKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELD-ERLSTLQNENQMLRH  145 (168)
Q Consensus        82 ~~~e~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~-~~v~~L~~En~~Lr~  145 (168)
                      ...+.++++.+-+++||+||-+||+|||.++..|+.+...+..+|..|. .+++.|..++..+..
T Consensus       278 ~~~~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~~~~~~~  342 (395)
T KOG1414|consen  278 VDEDPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNEVKQLSQ  342 (395)
T ss_pred             cCCCchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhHHhhhcc
Confidence            4555566666779999999999999999999999999999999999998 666666666665543

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=95.08  E-value=0.14  Score=35.24  Aligned_cols=49  Identities=20%  Similarity=0.201  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 030957          109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRGG  157 (168)
Q Consensus       109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~~  157 (168)
                      .++|.+||.++..++.-..+|...|.....++..|+.+|..+...++.-
T Consensus         3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~   51 (69)
T PF04102_consen    3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL   51 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3578999999999999888888888777777777777777777665554

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PRK00736 hypothetical protein; Provisional

Probab=95.02  E-value=0.11  Score=35.77  Aligned_cols=41  Identities=29%  Similarity=0.383  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957          110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT  150 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~  150 (168)
                      ++|.+||.++.+++.-...|...|...+.++..|..+|..+
T Consensus         5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L   45 (68)
T PRK00736          5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL   45 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45889999998888877777655555554444444444444

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=94.94  E-value=0.17  Score=43.04  Aligned_cols=51  Identities=20%  Similarity=0.288  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 030957          105 RERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRR  155 (168)
Q Consensus       105 R~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~  155 (168)
                      |+|=+..+.+||.++..+..++..|+.+|+.|+..|..|=..++-+.--..
T Consensus        88 RDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~~  138 (248)
T PF08172_consen   88 RDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYNN  138 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc
Confidence            355556669999999999999999999999999999999999998876543

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=94.77  E-value=0.089  Score=36.84  Aligned_cols=42  Identities=26%  Similarity=0.336  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957          110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      +.|.-|+.++..|..+|..|......|..||..|++.-....
T Consensus        18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~   59 (72)
T PF06005_consen   18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQ   59 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666677777777777777777777777777776554443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=94.74  E-value=0.18  Score=34.78  Aligned_cols=42  Identities=19%  Similarity=0.173  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957          110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      ..|+.|=..+..|..+|..|+.++..+..|...|.+.+....
T Consensus         7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar   48 (65)
T TIGR02449         7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQAR   48 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457778888888999999999999999999999988775543

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=94.73  E-value=0.12  Score=32.99  Aligned_cols=41  Identities=22%  Similarity=0.318  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 030957          114 ELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASR  154 (168)
Q Consensus       114 ~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~  154 (168)
                      +||..+..|......|+...+.|..||..|+.+|..+....
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl   42 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL   42 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            57788888888888888888888888888888888776543

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK00295 hypothetical protein; Provisional

Probab=94.72  E-value=0.15  Score=35.11  Aligned_cols=43  Identities=19%  Similarity=0.140  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      +.|.+||.++..++.-...|...|...+.++..|+.+|..+..
T Consensus         5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~   47 (68)
T PRK00295          5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIK   47 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3589999999998888887766666666555555555555543

>PRK04325 hypothetical protein; Provisional

Probab=94.72  E-value=0.16  Score=35.60  Aligned_cols=42  Identities=19%  Similarity=0.169  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957          110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      ++|.+||.++.+++.-...|...|...+.++..|..+|..+.
T Consensus         9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~   50 (74)
T PRK04325          9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLY   50 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            448999999999888888876666665555555555555553

>PRK04406 hypothetical protein; Provisional

Probab=94.65  E-value=0.18  Score=35.49  Aligned_cols=44  Identities=23%  Similarity=0.238  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030957          110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTAS  153 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~  153 (168)
                      ++|.+||.++..++.-...|...|...+.++..|+.+|..+...
T Consensus        11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~r   54 (75)
T PRK04406         11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGK   54 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57888888888888888887766666666666666666555443

>PRK02119 hypothetical protein; Provisional

Probab=94.65  E-value=0.18  Score=35.25  Aligned_cols=45  Identities=20%  Similarity=0.163  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030957          109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTAS  153 (168)
Q Consensus       109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~  153 (168)
                      .++|.+||.++..++.-..+|...|...+.++..|+.+|..+...
T Consensus         8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~r   52 (73)
T PRK02119          8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANK   52 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457888999999888888887766666666666666666555443

>PRK02793 phi X174 lysis protein; Provisional

Probab=94.39  E-value=0.23  Score=34.62  Aligned_cols=44  Identities=32%  Similarity=0.287  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      .++|.+||.++.+++.-...|...|...+.++..|..+|..+..
T Consensus         7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~   50 (72)
T PRK02793          7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTE   50 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35788899999888888877766666655555555555555543

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=93.63  E-value=0.36  Score=36.21  Aligned_cols=42  Identities=29%  Similarity=0.362  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      .+..|-.++..|......|-++...|+-||..||.+|..+..
T Consensus        16 ~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen   16 QLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344555555555555555666666677788888888888755

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PRK00846 hypothetical protein; Provisional

Probab=93.20  E-value=0.43  Score=33.95  Aligned_cols=44  Identities=27%  Similarity=0.279  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      .++|.+||.++...+.-..+|...|...+.++..|+.+|..+..
T Consensus        12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~   55 (77)
T PRK00846         12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE   55 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788888888887777777766665555555555555554443

>PRK10884 SH3 domain-containing protein; Provisional

Probab=93.06  E-value=1.4  Score=36.58  Aligned_cols=43  Identities=14%  Similarity=0.244  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957          109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus       109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      ++.+..++..+.+|+.+|.+|+.++..+++++..|+.++..+.
T Consensus       124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~  166 (206)
T PRK10884        124 QQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ  166 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445566677777888888888888888888888888877665

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=93.06  E-value=0.5  Score=35.70  Aligned_cols=42  Identities=31%  Similarity=0.324  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      .+..|-.++..|.....+|-++...|+-||..||..|..+..
T Consensus        16 ~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~   57 (110)
T PRK13169         16 NLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA   57 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            345555555666666666666667788888889999988743

>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain

Probab=92.97  E-value=1.6  Score=36.02  Aligned_cols=52  Identities=21%  Similarity=0.328  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCC
Q 030957          112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRGGSGGDTN  163 (168)
Q Consensus       112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~~~~~~~~  163 (168)
                      ..-+..+|..+.++..+|....+.|.+||.+||++.--+.....+++.++++
T Consensus       103 a~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl~LDeer~~~~~~~~~  154 (195)
T PF10226_consen  103 ASVMRQEVAQYQQKLKELEDKQEELIRENLELKELCLYLDEERPGSGRGGAG  154 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccCCCCCCCC
Confidence            4556778888999999999999999999999999998888877544444333

Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=92.88  E-value=0.31  Score=34.83  Aligned_cols=43  Identities=21%  Similarity=0.371  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcc
Q 030957          110 AYLNELETRVKDLERKNSELDERLST-------LQNENQMLRHILKNTTA  152 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v~~-------L~~En~~Lr~~L~~~~~  152 (168)
                      +-|.-|.-++++|..+|..|..++..       |..||..|++.......
T Consensus        18 dtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wqe   67 (79)
T PRK15422         18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE   67 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            34556677777777777777777665       78888888877655443

>PRK13922 rod shape-determining protein MreC; Provisional

Probab=92.62  E-value=0.37  Score=40.73  Aligned_cols=42  Identities=33%  Similarity=0.449  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 030957          108 KKAYLNELETRVKDLERKNSELDERLS---TLQNENQMLRHILKN  149 (168)
Q Consensus       108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~---~L~~En~~Lr~~L~~  149 (168)
                      .-..+.+|..+.+.|++||.+|+.++.   .|+.||..|+++|.-
T Consensus        67 ~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~  111 (276)
T PRK13922         67 SLASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNL  111 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            334566778888888888888877776   678999999998854

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=92.54  E-value=0.59  Score=35.04  Aligned_cols=46  Identities=26%  Similarity=0.291  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 030957          110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRR  155 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~  155 (168)
                      ..+..||..+..|-.+...|+.+|..|..||..|+-....+...+.
T Consensus         8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~   53 (107)
T PF06156_consen    8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLE   53 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3577888888888888888889999999999988877777765443

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=92.41  E-value=1.8  Score=33.96  Aligned_cols=65  Identities=23%  Similarity=0.317  Sum_probs=56.3

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957           88 NKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus        88 ~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      ++-+.-.+.|+..+-.-=+-.+..+..|+.++..+..+...|...+..|..|+..|-+.|+....
T Consensus        30 EreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~   94 (140)
T PF10473_consen   30 ERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQE   94 (140)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556677899999888899999999999999999999999999999999999988888876653

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=92.40  E-value=0.29  Score=33.12  Aligned_cols=31  Identities=35%  Similarity=0.502  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          117 TRVKDLERKNSELDERLSTLQNENQMLRHIL  147 (168)
Q Consensus       117 ~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L  147 (168)
                      .+|+.|.....+|..++..|+.||..||+..
T Consensus        14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~   44 (59)
T PF01166_consen   14 EEVEVLKEQIAELEERNSQLEEENNLLKQNA   44 (59)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4677777888888888888999999999864

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>PF15058 Speriolin_N: Speriolin N terminus

Probab=91.93  E-value=0.5  Score=39.14  Aligned_cols=39  Identities=31%  Similarity=0.440  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          113 NELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      +-|..+++.|-.||++||.+|. |..||++||..|.+...
T Consensus         8 eGlrhqierLv~ENeeLKKlVr-LirEN~eLksaL~ea~~   46 (200)
T PF15058_consen    8 EGLRHQIERLVRENEELKKLVR-LIRENHELKSALGEACA   46 (200)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHhhc
Confidence            4566788888999999999886 66799999999877665

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=91.46  E-value=6.5  Score=34.48  Aligned_cols=47  Identities=15%  Similarity=0.370  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHH-----HHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccccC
Q 030957          109 KAYLNELETRVKD-----LERKNSELDERLS--TLQNENQMLRHILKNTTASRR  155 (168)
Q Consensus       109 k~~~~~LE~~v~~-----Le~eN~~L~~~v~--~L~~En~~Lr~~L~~~~~~~~  155 (168)
                      .-.|++|..++..     .|.|.+...+|+.  +.+.|++.|||.+..+...+.
T Consensus        88 etEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~  141 (305)
T PF15290_consen   88 ETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLA  141 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            3345555444332     3555555555543  567888888888887776554

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=91.30  E-value=2.1  Score=30.58  Aligned_cols=47  Identities=23%  Similarity=0.331  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          106 ERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      ++=..++..|+.-+..|-......+.+...|..||.+|.+-|.++-.
T Consensus        19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~   65 (80)
T PF10224_consen   19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS   65 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445778888888888888888899999999999999999988864

The exact function is unknown.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=91.27  E-value=0.63  Score=44.42  Aligned_cols=43  Identities=33%  Similarity=0.414  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      ..+..|+..++.|+.+|..|+..+..|+.++.+|+..|..+..
T Consensus       422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r  464 (652)
T COG2433         422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR  464 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467788888888888888888888888888888888877754

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=91.19  E-value=1.7  Score=34.94  Aligned_cols=49  Identities=31%  Similarity=0.457  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957          103 QARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus       103 ~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      .--++-+..+..|..+++.|+.+|..|..++..++.+..+|-.+|....
T Consensus       104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RAR  152 (161)
T TIGR02894       104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRAR  152 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445666778888888888888888888888888888888888887654

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=91.16  E-value=1.5  Score=30.70  Aligned_cols=29  Identities=31%  Similarity=0.436  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          111 YLNELETRVKDLERKNSELDERLSTLQNE  139 (168)
Q Consensus       111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~E  139 (168)
                      .+.+|..+...|..+|..|+.+...|+.+
T Consensus        26 e~eeLke~n~~L~~e~~~L~~en~~L~~e   54 (72)
T PF06005_consen   26 ENEELKEKNNELKEENEELKEENEQLKQE   54 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore

Probab=90.94  E-value=2.5  Score=30.79  Aligned_cols=51  Identities=33%  Similarity=0.459  Sum_probs=33.0

Q ss_pred             hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957           97 NRVSAQQ--ARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHIL  147 (168)
Q Consensus        97 NR~AA~~--sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L  147 (168)
                      .+|+|-+  +-.|=...|.+|+.++..|..+|..|+.++..-..|...|-..|
T Consensus        34 ~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll   86 (87)
T PF12709_consen   34 TKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQELLKLL   86 (87)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4566654  22233445677777777777777777777777777777766554

Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=90.93  E-value=1  Score=33.40  Aligned_cols=43  Identities=12%  Similarity=0.179  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          106 ERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK  148 (168)
Q Consensus       106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~  148 (168)
                      ...++++.+++.++..|+.+|..|+.+|..|+..-.++.++..
T Consensus        30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR   72 (105)
T PRK00888         30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERAR   72 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence            4456677888888888888888888888888875455555544

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=90.87  E-value=1.1  Score=29.98  Aligned_cols=37  Identities=14%  Similarity=0.284  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILK  148 (168)
Q Consensus       112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~  148 (168)
                      +++||.++..++.....++.+++.|..++..|.+-++
T Consensus         2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk   38 (55)
T PF05377_consen    2 IDELENELPRIESSINTVKKENEEISESVEKIEENVK   38 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666555555555555555544444444444443

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>TIGR00219 mreC rod shape-determining protein MreC

Probab=90.69  E-value=0.77  Score=39.58  Aligned_cols=38  Identities=29%  Similarity=0.422  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 030957          112 LNELETRVKDLERKNSELDERLS----TLQNENQMLRHILKN  149 (168)
Q Consensus       112 ~~~LE~~v~~Le~eN~~L~~~v~----~L~~En~~Lr~~L~~  149 (168)
                      +.+|..+.+.|..++.+|+.++.    .|+.||..||++|.-
T Consensus        68 ~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~  109 (283)
T TIGR00219        68 VNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNS  109 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            34556666667776665544333    388999999998854

MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=90.58  E-value=1.3  Score=33.50  Aligned_cols=45  Identities=24%  Similarity=0.268  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 030957          111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRR  155 (168)
Q Consensus       111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~  155 (168)
                      .+..||..+..|-.+...|+..|..|..||..|+-.-..+...+.
T Consensus         9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~   53 (110)
T PRK13169          9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLE   53 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466777777777777777777777777777777766555554443

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=90.31  E-value=0.28  Score=46.22  Aligned_cols=43  Identities=28%  Similarity=0.359  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          102 QQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLR  144 (168)
Q Consensus       102 ~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr  144 (168)
                      +.+=.-=+..+..|+.+++.|..||..|+++|..|..||..|+
T Consensus       301 KEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k  343 (655)
T KOG4343|consen  301 KEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK  343 (655)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence            3444667888999999999999999999999999999998775

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=89.94  E-value=2.8  Score=38.99  Aligned_cols=57  Identities=14%  Similarity=0.241  Sum_probs=36.3

Q ss_pred             HHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957           95 LRNRVSAQQAR-ERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus        95 ~rNR~AA~~sR-~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      .+.++++++.+ .-=++.|+.|+.+++.|...+..|..+|+.|+.||..|+.+|..+.
T Consensus        67 nqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~  124 (475)
T PRK13729         67 RQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALG  124 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence            44444444422 1123334444445555557777899999999999999999996543

>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi

Probab=89.88  E-value=1.3  Score=29.28  Aligned_cols=44  Identities=34%  Similarity=0.406  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957          108 KKAYLNELETRVKDLER----KNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus       108 Kk~~~~~LE~~v~~Le~----eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      +...|.+|+.++..-..    .+.....+|..|..||..|+.+|....
T Consensus         2 w~~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r   49 (52)
T PF12808_consen    2 WLLRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLR   49 (52)
T ss_pred             HHHHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34556666666554221    344567788888888888888886554

In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=89.73  E-value=1.1  Score=38.47  Aligned_cols=41  Identities=24%  Similarity=0.340  Sum_probs=17.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957           97 NRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQ  137 (168)
Q Consensus        97 NR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~  137 (168)
                      -|..++.--..-+..+..|+.+...|..++.+|+.++..|.
T Consensus       209 SR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~  249 (269)
T KOG3119|consen  209 SRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLR  249 (269)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333444444444444444444444444444444

>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function

Probab=89.36  E-value=2.9  Score=30.97  Aligned_cols=41  Identities=27%  Similarity=0.384  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030957          113 NELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTAS  153 (168)
Q Consensus       113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~  153 (168)
                      .+|...++..+.|-.-|++.|..|..+|..|...|..+...
T Consensus         4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~   44 (96)
T PF11365_consen    4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSK   44 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56777888888888888888999999999998888887753

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=89.31  E-value=5.1  Score=27.20  Aligned_cols=49  Identities=22%  Similarity=0.401  Sum_probs=32.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957           97 NRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRH  145 (168)
Q Consensus        97 NR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~  145 (168)
                      .+.+.+.-=.+=+.-...++.++++.+..|..|..+|..|..+...||.
T Consensus        12 akQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~   60 (61)
T PF08826_consen   12 AKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3333333334445555677778888888888888888888887777663

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=88.85  E-value=7.3  Score=31.98  Aligned_cols=64  Identities=30%  Similarity=0.445  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957           86 KENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN  149 (168)
Q Consensus        86 ~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~  149 (168)
                      .+...+++.+.|-..-..+=..-+..+..++.++..|+.++..|..++..|..|...|...+..
T Consensus        69 ~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~  132 (201)
T PF13851_consen   69 EEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES  132 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566666666666666666777888889999999999999999999999888888766543

>PRK09413 IS2 repressor TnpA; Reviewed

Probab=88.70  E-value=2.9  Score=31.27  Aligned_cols=53  Identities=21%  Similarity=0.232  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          100 SAQQARERKKAYLNEL------------ETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       100 AA~~sR~RKk~~~~~L------------E~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      +.......+++|...-            ......++.+|.+|++++..|..|+..|+..+.-+..
T Consensus        42 s~~tl~~W~r~y~~~~~~~~~~~~~~~~~~~~~~~~~ei~~L~~el~~L~~E~diLKKa~~~~~~  106 (121)
T PRK09413         42 AASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRA  106 (121)
T ss_pred             CHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            3344556666665321            1235567888999999999999999999988855543

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=88.18  E-value=2.1  Score=27.25  Aligned_cols=36  Identities=22%  Similarity=0.316  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          113 NELETRVKDLERKNSELDERLSTLQNENQMLRHILK  148 (168)
Q Consensus       113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~  148 (168)
                      +-|-..+..|..+|..|..+.+.|..|+..|+..|.
T Consensus         8 ~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~   43 (45)
T PF02183_consen    8 DALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ   43 (45)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            456666777777777777777777777777776653

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins

Probab=88.15  E-value=0.81  Score=36.96  Aligned_cols=20  Identities=30%  Similarity=0.441  Sum_probs=2.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 030957          128 ELDERLSTLQNENQMLRHIL  147 (168)
Q Consensus       128 ~L~~~v~~L~~En~~Lr~~L  147 (168)
                      .|+.+++.|+.|...||+.|
T Consensus        28 ~L~~~~QRLkDE~RDLKqEl   47 (166)
T PF04880_consen   28 NLREEVQRLKDELRDLKQEL   47 (166)
T ss_dssp             HHHHCH--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555554

Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=88.03  E-value=2.7  Score=28.33  Aligned_cols=42  Identities=21%  Similarity=0.515  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          107 RKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK  148 (168)
Q Consensus       107 RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~  148 (168)
                      ..+..+..|+.+++.|..+|..|+.++..|...-.++.....
T Consensus        21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR   62 (80)
T PF04977_consen   21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR   62 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            455667788888888888888888888777444444444433

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.87  E-value=1.9  Score=30.44  Aligned_cols=40  Identities=23%  Similarity=0.375  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHh
Q 030957          111 YLNELETRVKDLERKNSEL-------DERLSTLQNENQMLRHILKNT  150 (168)
Q Consensus       111 ~~~~LE~~v~~Le~eN~~L-------~~~v~~L~~En~~Lr~~L~~~  150 (168)
                      -|.-|+-++++|..+|..|       +...+.|+.||..|++.-..-
T Consensus        19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~W   65 (79)
T COG3074          19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGW   65 (79)
T ss_pred             HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666666666654       445556777777777665443

>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function

Probab=87.80  E-value=2.5  Score=30.49  Aligned_cols=43  Identities=23%  Similarity=0.444  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      ..++.|..-+..|++.|..|..++..|...|+..|..+++-..
T Consensus        33 s~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~~   75 (83)
T PF03670_consen   33 SMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQLS   75 (83)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4678899999999999999999999999999999999877655

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=87.72  E-value=1.9  Score=36.15  Aligned_cols=47  Identities=19%  Similarity=0.311  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          106 ERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      +.-...+..|+.+++.|+..|.+|...+..++.++..|.+++.++..
T Consensus        52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~   98 (251)
T PF11932_consen   52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE   98 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455667777777777888888888888888888888877776654

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=87.68  E-value=1.5  Score=29.35  Aligned_cols=35  Identities=17%  Similarity=0.433  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHI  146 (168)
Q Consensus       112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~  146 (168)
                      +..|+..+..++.+|.+|+..|+.|..-.+.|-.+
T Consensus         9 ~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~l   43 (55)
T PF05377_consen    9 LPRIESSINTVKKENEEISESVEKIEENVKDLLSL   43 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666666666666666666555544443

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>PRK14127 cell division protein GpsB; Provisional

Probab=87.59  E-value=2.4  Score=32.01  Aligned_cols=42  Identities=12%  Similarity=0.249  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957          110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      ++++++-..++.|..+|..|+.++..|+.++..|..++....
T Consensus        30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~   71 (109)
T PRK14127         30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGA   71 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            466667777778888888888888888888888888877554

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=87.57  E-value=1.8  Score=32.11  Aligned_cols=35  Identities=20%  Similarity=0.197  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRH  145 (168)
Q Consensus       111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~  145 (168)
                      .+.+|+.++..++.+|..|+.+...|..|+..|+.
T Consensus        28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~   62 (105)
T PRK00888         28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG   62 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            34566666777777777766666666666666654

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=87.56  E-value=6.2  Score=31.50  Aligned_cols=33  Identities=24%  Similarity=0.418  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          120 KDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       120 ~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      ..++.++..|..+|..|+.+|..|...+.++..
T Consensus        85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~  117 (158)
T PF09744_consen   85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLSD  117 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            567788889999999999999999988877654

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=87.30  E-value=2.3  Score=34.20  Aligned_cols=39  Identities=26%  Similarity=0.340  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957          112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT  150 (168)
Q Consensus       112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~  150 (168)
                      ...|+.+...|+.++..|+.++..|+.||..|.+.+..+
T Consensus        99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~  137 (161)
T TIGR02894        99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTI  137 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666666777777777777777777777666544

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]

Probab=87.28  E-value=1.8  Score=35.43  Aligned_cols=66  Identities=26%  Similarity=0.266  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 030957           87 ENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRGGS  158 (168)
Q Consensus        87 e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~~~  158 (168)
                      |..|..|.++++      -+..+..+.+|+.++..|+.+..+++..+..|.......+.-|..+....+.++
T Consensus        89 Ey~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~~~el~~~~q~~p~~~  154 (181)
T KOG3335|consen   89 EYWRQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKPESELKPIRQAPPNPG  154 (181)
T ss_pred             hhHHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccCCCCCC
Confidence            344555555555      466777788888888888887777777777776555555555555554444443

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=87.08  E-value=4.9  Score=30.84  Aligned_cols=48  Identities=23%  Similarity=0.324  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          105 RERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       105 R~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      +..|..-+++|+.+++.|+.+...|..+...|+.+...|+..|...-.
T Consensus        65 k~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~  112 (119)
T COG1382          65 KVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG  112 (119)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            346777788899999988888888888888888888888888876544

>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export []

Probab=87.04  E-value=1.2  Score=32.73  Aligned_cols=34  Identities=29%  Similarity=0.449  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          106 ERKKAYLNELETRVKDLERKNSELDERLSTLQNE  139 (168)
Q Consensus       106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~E  139 (168)
                      .-|+.+++.|..++..++.+|..|..+|..++.|
T Consensus        76 ~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~e  109 (109)
T PF03980_consen   76 PYKKKEREQLNARLQELEEENEALAEEIQEQRKE  109 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            3467888999999999999999999888877653

>PRK00736 hypothetical protein; Provisional

Probab=86.84  E-value=6.2  Score=27.07  Aligned_cols=44  Identities=11%  Similarity=0.158  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      ...+..+|.-++.|-....+.+.+|..|..++..|..+|..+..
T Consensus        11 E~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~   54 (68)
T PRK00736         11 EIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEE   54 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34567788889999999999999999999999999999988754

>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain

Probab=86.74  E-value=7.9  Score=32.06  Aligned_cols=64  Identities=23%  Similarity=0.269  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957           86 KENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus        86 ~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      .-.+|+|+.+..++++---+-+   .|.++..+++..-.|+..|+.....|+.+|++||...-.+..
T Consensus        20 el~~rLR~~E~ek~~~m~~~g~---lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDd   83 (195)
T PF10226_consen   20 ELVRRLRRAEAEKMSLMVEHGR---LMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDD   83 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            3467888888888777655543   456666777777788888888888899999999988755543

Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.

>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins

Probab=86.66  E-value=1.6  Score=38.04  Aligned_cols=45  Identities=18%  Similarity=0.265  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 030957          110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASR  154 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~  154 (168)
                      +|+-.||-+.+....+...|+.+|..|+..|..||++|..+...+
T Consensus        64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~  108 (389)
T PF06216_consen   64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREII  108 (389)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577788888888888889999999999999999999988876544

The function of this family is unknown.

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=86.57  E-value=2.3  Score=29.35  Aligned_cols=27  Identities=33%  Similarity=0.330  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957          124 RKNSELDERLSTLQNENQMLRHILKNT  150 (168)
Q Consensus       124 ~eN~~L~~~v~~L~~En~~Lr~~L~~~  150 (168)
                      ....+|-.....|..||..|++++..+
T Consensus         7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~   33 (65)
T TIGR02449         7 AQVEHLLEYLERLKSENRLLRAQEKTW   33 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444455555555555555444

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=86.57  E-value=2.7  Score=27.95  Aligned_cols=33  Identities=24%  Similarity=0.475  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          108 KKAYLNELETRVKDLERKNSELDERLSTLQNEN  140 (168)
Q Consensus       108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En  140 (168)
                      =...+..|+.+...|..++..|..++..|..+|
T Consensus        31 Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~   63 (64)
T PF00170_consen   31 LEEKVEELESENEELKKELEQLKKEIQSLKSEN   63 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            334455555555555555555555555555554

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PRK04325 hypothetical protein; Provisional

Probab=86.51  E-value=6.4  Score=27.45  Aligned_cols=44  Identities=16%  Similarity=0.227  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      ...+..+|.-+++|-....+.+.+|..|+.++..|..+|..+..
T Consensus        15 E~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~~   58 (74)
T PRK04325         15 EIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDANP   58 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            35677888899999999999999999999999999999988754

>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain

Probab=86.36  E-value=4.7  Score=27.11  Aligned_cols=29  Identities=24%  Similarity=0.368  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          121 DLERKNSELDERLSTLQNENQMLRHILKN  149 (168)
Q Consensus       121 ~Le~eN~~L~~~v~~L~~En~~Lr~~L~~  149 (168)
                      ..-.+...|..++..|+.+|..|+.+|++
T Consensus        30 ~vL~~R~~l~~e~~~L~~qN~eLr~lLkq   58 (60)
T PF14775_consen   30 KVLLDRAALIQEKESLEQQNEELRSLLKQ   58 (60)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33445566778889999999999999975

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=86.22  E-value=7.4  Score=33.37  Aligned_cols=31  Identities=23%  Similarity=0.440  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          117 TRVKDLERKNSELDERLSTLQNENQMLRHIL  147 (168)
Q Consensus       117 ~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L  147 (168)
                      .+++++.++|.+|..++..|+.|...++..|
T Consensus       142 ekl~E~~~EkeeL~~eleele~e~ee~~erl  172 (290)
T COG4026         142 EKLEELQKEKEELLKELEELEAEYEEVQERL  172 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444443333333333333

>PRK02793 phi X174 lysis protein; Provisional

Probab=85.97  E-value=7.4  Score=26.99  Aligned_cols=44  Identities=16%  Similarity=0.261  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      ...+..+|.-+..|-....+.+.+|..|+.++..|.++|..+..
T Consensus        14 E~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~   57 (72)
T PRK02793         14 ESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP   57 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            34567788889999999999999999999999999999998764

>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S

Probab=85.90  E-value=9.6  Score=30.40  Aligned_cols=57  Identities=19%  Similarity=0.369  Sum_probs=45.8

Q ss_pred             cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957           85 DKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQ  141 (168)
Q Consensus        85 e~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~  141 (168)
                      ++-.+.++++++.|..|.-|=.+|-....+|..++++.+....++...|..|...+.
T Consensus        80 ~~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~  136 (152)
T PF11500_consen   80 EKAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQMA  136 (152)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667788999999999999999999999999988888777777777776665443

cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].

>PRK04406 hypothetical protein; Provisional

Probab=85.76  E-value=7.5  Score=27.27  Aligned_cols=44  Identities=16%  Similarity=0.203  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      ...+..+|.-+..|.....+.+.+|..|+.++..|.++|..+..
T Consensus        17 E~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~   60 (75)
T PRK04406         17 ECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDS   60 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            34567788889999999999999999999999999999988764

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=85.74  E-value=2.5  Score=33.06  Aligned_cols=33  Identities=30%  Similarity=0.535  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          120 KDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       120 ~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      .+||.+|..|+.+|+.|..||..|+..|..+..
T Consensus        77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~  109 (135)
T KOG4196|consen   77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKS  109 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            358999999999999999999999988877664

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=85.66  E-value=17  Score=29.25  Aligned_cols=37  Identities=24%  Similarity=0.337  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          113 NELETRVKDLERKNSELDERLSTLQNENQMLRHILKN  149 (168)
Q Consensus       113 ~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~  149 (168)
                      +.|..++..|.-++..|..++..|+.||..|.+++..
T Consensus       147 e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~  183 (194)
T PF08614_consen  147 EILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ  183 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444445555666666777777777766543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK02119 hypothetical protein; Provisional

Probab=85.51  E-value=7.9  Score=26.95  Aligned_cols=44  Identities=14%  Similarity=0.141  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      ...+..+|.-+..|.....+.+.+|+.|+.++..|.++|..+..
T Consensus        15 E~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~   58 (73)
T PRK02119         15 EMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQP   58 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            34567788889999999999999999999999999999998753

>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []

Probab=85.43  E-value=0.49  Score=35.19  Aligned_cols=42  Identities=31%  Similarity=0.495  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957          110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      .||+.|...+..|..+|..|+.++..|..++..|+.....+.
T Consensus        25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~   66 (131)
T PF05103_consen   25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQ   66 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence            578888888888888888888888877776666655444433

Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.

>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.39  E-value=5.8  Score=27.91  Aligned_cols=43  Identities=30%  Similarity=0.244  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      ++|.+||.++..-+.-..+|...|...+..+..++.+|.-+..
T Consensus         8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~   50 (72)
T COG2900           8 ARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTE   50 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678888888887777777766666666655555555555443

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=85.17  E-value=3.1  Score=28.07  Aligned_cols=30  Identities=23%  Similarity=0.452  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957          121 DLERKNSELDERLSTLQNENQMLRHILKNT  150 (168)
Q Consensus       121 ~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~  150 (168)
                      .+..+...|+.+++.|..+|..|+..+..+
T Consensus        21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l   50 (80)
T PF04977_consen   21 QLNQEIAELQKEIEELKKENEELKEEIERL   50 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444444455555555555555555444

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>PRK00295 hypothetical protein; Provisional

Probab=85.01  E-value=6.4  Score=27.00  Aligned_cols=43  Identities=12%  Similarity=0.040  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957          109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus       109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      ...+..+|.-+..|.....+.+.+|..|+.++..|.++|..+.
T Consensus        11 E~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00295         11 ESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3456778888999999999999999999999999999999875

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=84.86  E-value=4  Score=34.96  Aligned_cols=45  Identities=33%  Similarity=0.381  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957          106 ERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT  150 (168)
Q Consensus       106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~  150 (168)
                      .++...++++..+++.|+.+|..|...+..|..|.-.|+..+.++
T Consensus       159 eele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL  203 (290)
T COG4026         159 EELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL  203 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence            344444444444444444455555555555554555555554444

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=84.74  E-value=14  Score=30.70  Aligned_cols=19  Identities=26%  Similarity=0.517  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 030957          115 LETRVKDLERKNSELDERL  133 (168)
Q Consensus       115 LE~~v~~Le~eN~~L~~~v  133 (168)
                      ++.++..|......++.+|
T Consensus        68 ~~~r~~~l~~~i~~~~~~i   86 (302)
T PF10186_consen   68 LRERLERLRERIERLRKRI   86 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PRK10884 SH3 domain-containing protein; Provisional

Probab=84.52  E-value=10  Score=31.40  Aligned_cols=40  Identities=8%  Similarity=0.117  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          108 KKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHIL  147 (168)
Q Consensus       108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L  147 (168)
                      ....+.+|+.+.+.|..++..++.+++.|+.+|..++..+
T Consensus       130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~  169 (206)
T PRK10884        130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI  169 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444566667777777777777777766666666666443

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=84.48  E-value=3.9  Score=31.05  Aligned_cols=39  Identities=28%  Similarity=0.366  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 030957          111 YLNELETRVKDLERKNSELDERLSTLQN-------ENQMLRHILKN  149 (168)
Q Consensus       111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~-------En~~Lr~~L~~  149 (168)
                      .+..||..+-.|-.+...|++.+..|..       ||..||.+|..
T Consensus         9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~   54 (114)
T COG4467           9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE   54 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence            4566677766666666666666665554       55555666654

>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin

Probab=83.96  E-value=14  Score=28.45  Aligned_cols=60  Identities=23%  Similarity=0.243  Sum_probs=45.0

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957           92 KRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus        92 rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      .|.++.|.+=---|.==+.+|..||.+...++.-|..|..+|.-|+..+...|..+..+.
T Consensus        14 ~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~   73 (134)
T PF08232_consen   14 HRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLK   73 (134)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            345666666666666667778888888888888888888888888888887777776544

Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.80  E-value=15  Score=31.91  Aligned_cols=64  Identities=16%  Similarity=0.328  Sum_probs=51.6

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957           88 NKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus        88 ~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      +..+.-+..+.--++.--+.-...++++..++..+..++.+++..+..|+.++..|+..|.+-.
T Consensus        37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~  100 (265)
T COG3883          37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ  100 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556667777777888888888888999999999999999888888888888888877776543

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=83.68  E-value=5.9  Score=28.35  Aligned_cols=35  Identities=20%  Similarity=0.304  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHI  146 (168)
Q Consensus       112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~  146 (168)
                      ++.||.+|...-..+.-|+-+|+.|..+|..|.+.
T Consensus         6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e   40 (79)
T PRK15422          6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQE   40 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555554444444444444444444444443

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=83.44  E-value=5.6  Score=27.19  Aligned_cols=43  Identities=21%  Similarity=0.299  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      ..+..++.-++.|.........+|..|+.++..|..+|..+..
T Consensus        11 ~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~   53 (69)
T PF04102_consen   11 IKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED   53 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4566778889999999999999999999999999999999874

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore

Probab=83.44  E-value=7.4  Score=28.32  Aligned_cols=35  Identities=29%  Similarity=0.432  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          108 KKAYLNELETRVKDLERKNSELDERLSTLQNENQM  142 (168)
Q Consensus       108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~  142 (168)
                      |+-|-...+.+|..|+.+|..|..++..|..++..
T Consensus        40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~   74 (87)
T PF12709_consen   40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDT   74 (87)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555566666666666666666655554433

Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].

>PRK11637 AmiB activator; Provisional

Probab=83.40  E-value=11  Score=33.80  Aligned_cols=15  Identities=27%  Similarity=0.353  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHHHH
Q 030957          110 AYLNELETRVKDLER  124 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~  124 (168)
                      ..+..|+.++..++.
T Consensus        75 ~~l~~l~~qi~~~~~   89 (428)
T PRK11637         75 AQLKKQEEAISQASR   89 (428)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            334444443333333

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=83.23  E-value=12  Score=28.44  Aligned_cols=36  Identities=31%  Similarity=0.542  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957          115 LETRVKDLERKNSELDERLSTLQNENQMLRHILKNT  150 (168)
Q Consensus       115 LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~  150 (168)
                      .+.+-..|+.++..+..++..|..+|.-|-++|..+
T Consensus        96 w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l  131 (132)
T PF07926_consen   96 WEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL  131 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            344455577788888888889999999998888765

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=83.15  E-value=2.5  Score=28.69  Aligned_cols=23  Identities=39%  Similarity=0.521  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 030957          109 KAYLNELETRVKDLERKNSELDE  131 (168)
Q Consensus       109 k~~~~~LE~~v~~Le~eN~~L~~  131 (168)
                      |+.|.+|+.++..|+.||.-|+.
T Consensus        20 K~~I~eL~~~n~~Le~EN~~Lk~   42 (59)
T PF01166_consen   20 KEQIAELEERNSQLEEENNLLKQ   42 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            34556666666666666666654

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function

Probab=82.97  E-value=7.6  Score=28.72  Aligned_cols=43  Identities=23%  Similarity=0.231  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      .++...|.+..-|.....+|..+...|..|...++.....+..
T Consensus         8 ~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~   50 (96)
T PF11365_consen    8 RQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDS   50 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            4677788888888888888888888899999999998877764

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=82.92  E-value=5.6  Score=31.02  Aligned_cols=31  Identities=26%  Similarity=0.484  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          115 LETRVKDLERKNSELDERLSTLQNENQMLRH  145 (168)
Q Consensus       115 LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~  145 (168)
                      ++.+|..|...|..|..+|+.|......++.
T Consensus        33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~   63 (143)
T PF12718_consen   33 KEQEITSLQKKNQQLEEELDKLEEQLKEAKE   63 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK11637 AmiB activator; Provisional

Probab=82.56  E-value=13  Score=33.47  Aligned_cols=11  Identities=18%  Similarity=0.549  Sum_probs=4.0

Q ss_pred             HHHHHHHHHHH
Q 030957          129 LDERLSTLQNE  139 (168)
Q Consensus       129 L~~~v~~L~~E  139 (168)
                      |..+|..++.+
T Consensus       108 l~~eI~~~q~~  118 (428)
T PRK11637        108 LNASIAKLEQQ  118 (428)
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins

Probab=82.32  E-value=2.5  Score=32.43  Aligned_cols=26  Identities=35%  Similarity=0.507  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          127 SELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       127 ~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      .+|.++|..|+.||..|+.+|.....
T Consensus         6 EeLaaeL~kLqmENk~LKkkl~~~~~   31 (118)
T PF05812_consen    6 EELAAELQKLQMENKALKKKLRQSVG   31 (118)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            46677777788888888888876554

; PDB: 2OA5_B 2H3R_D.

>PF15556 Zwint: ZW10 interactor

Probab=82.28  E-value=22  Score=30.07  Aligned_cols=53  Identities=15%  Similarity=0.230  Sum_probs=23.3

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957           93 RLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRH  145 (168)
Q Consensus        93 R~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~  145 (168)
                      -++++|+|..+-.-....++..|.....++......-..+++.|..|...|++
T Consensus       117 a~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkq  169 (252)
T PF15556_consen  117 AMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQ  169 (252)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555444444455555544444433333333333344444333333

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=82.26  E-value=8.6  Score=27.97  Aligned_cols=44  Identities=20%  Similarity=0.321  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957          108 KKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus       108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      +.+-+..|+.+++.|+.+...|..++..|..+...|+..|.++.
T Consensus        61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~  104 (105)
T cd00632          61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ  104 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55566778888888888888888888888888888888887653

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=81.40  E-value=19  Score=29.52  Aligned_cols=50  Identities=20%  Similarity=0.261  Sum_probs=22.4

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957           94 LLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQML  143 (168)
Q Consensus        94 ~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~L  143 (168)
                      ++.+.++-+..+.....+...|+.++.+-+.++..|...+..|+..+..|
T Consensus        94 RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el  143 (190)
T PF05266_consen   94 RLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILEL  143 (190)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            34444555555555555555555555544333333333333333333333

>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []

Probab=81.20  E-value=4  Score=29.03  Aligned_cols=28  Identities=21%  Similarity=0.414  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          119 VKDLERKNSELDERLSTLQNENQMLRHI  146 (168)
Q Consensus       119 v~~Le~eN~~L~~~v~~L~~En~~Lr~~  146 (168)
                      +.+|.++|.+|+.+|..|+.|.+.++..
T Consensus         2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~   29 (76)
T PF07334_consen    2 IHEIQEENARLKEEIQKLEAELQQNKRE   29 (76)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3568889999999999998888887766

This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=81.16  E-value=9  Score=27.10  Aligned_cols=42  Identities=26%  Similarity=0.444  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957          109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT  150 (168)
Q Consensus       109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~  150 (168)
                      ...+..|+.+.+.++.+...|...+..|..+...++..|...
T Consensus        61 ~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~  102 (106)
T PF01920_consen   61 EEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL  102 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666777777777777777777777777777776666543

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=81.16  E-value=6.9  Score=36.47  Aligned_cols=27  Identities=22%  Similarity=0.233  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          122 LERKNSELDERLSTLQNENQMLRHILK  148 (168)
Q Consensus       122 Le~eN~~L~~~v~~L~~En~~Lr~~L~  148 (168)
                      |.++..+|+.++..|+..+..|..+|.
T Consensus       114 ~~~~~~ql~~~~~~~~~~l~~l~~~l~  140 (472)
T TIGR03752       114 LTKEIEQLKSERQQLQGLIDQLQRRLA  140 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333444444444444444444444443

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=81.14  E-value=27  Score=28.85  Aligned_cols=41  Identities=29%  Similarity=0.330  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      +..||.+-.+|-..|-++...+..|+.|+..|+........
T Consensus       177 L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~  217 (221)
T PF05700_consen  177 LRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE  217 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45677777777777888888888888888888877766544

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>PRK09343 prefoldin subunit beta; Provisional

Probab=80.90  E-value=12  Score=28.24  Aligned_cols=40  Identities=20%  Similarity=0.266  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957          112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus       112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      +.+|+.+++.++.+...|..+...|+.....+...|..+-
T Consensus        73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll  112 (121)
T PRK09343         73 EKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML  112 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444555555555555555555554443

>PRK00846 hypothetical protein; Provisional

Probab=80.82  E-value=15  Score=26.02  Aligned_cols=44  Identities=11%  Similarity=-0.000  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030957          110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTAS  153 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~  153 (168)
                      ..+...|.-++.|.......+..|+.|..++..|..+|+.+...
T Consensus        20 ~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s   63 (77)
T PRK00846         20 TRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST   63 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            34566777888888888899999999999999999999998753

>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids []

Probab=80.74  E-value=10  Score=26.36  Aligned_cols=40  Identities=20%  Similarity=0.343  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957          112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus       112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      ..+|......-..+|..|..+|..|......|-.+|..+.
T Consensus        30 y~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs   69 (70)
T PF04899_consen   30 YADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS   69 (70)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4667777777788899999999999999988888887664

>TIGR02209 ftsL_broad cell division protein FtsL

Probab=80.69  E-value=9.8  Score=26.20  Aligned_cols=32  Identities=16%  Similarity=0.317  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          107 RKKAYLNELETRVKDLERKNSELDERLSTLQN  138 (168)
Q Consensus       107 RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~  138 (168)
                      .....+..++.++..|+.+|.+|+.++..|..
T Consensus        28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~   59 (85)
T TIGR02209        28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELSR   59 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            44555667777777777777777777776665

This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.

>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division []

Probab=80.68  E-value=5.3  Score=28.03  Aligned_cols=34  Identities=26%  Similarity=0.428  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          119 VKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       119 v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      +..+.++|-+|+..+..|..|+..++..|..+..
T Consensus        38 ~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~   71 (75)
T PF07989_consen   38 IEELLKENIELKVEVESLKRELQEKKKLLKEAEK   71 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456778888999999999999999998887654

>smart00338 BRLZ basic region leucin zipper

Probab=80.59  E-value=7.5  Score=25.81  Aligned_cols=34  Identities=29%  Similarity=0.444  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957          118 RVKDLERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus       118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      .+..|+.+...|..++..|..++..|+..+..+.
T Consensus        27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk   60 (65)
T smart00338       27 EIEELERKVEQLEAENERLKKEIERLRRELEKLK   60 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555555555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	168
2oqq_A	42	Crystal Structure Of Hy5 Leucine Zipper Homodimer F		5e-14

>pdb|2OQQ|A Chain A, Crystal Structure Of Hy5 Leucine Zipper Homodimer From Arabidopsis Thaliana Length = 42

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 36/40 (90%), Positives = 38/40 (95%)
Query: 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149
           AYL+ELE RVKDLE KNSEL+ERLSTLQNENQMLRHILKN
Sbjct: 3   AYLSELENRVKDLENKNSELEERLSTLQNENQMLRHILKN 42

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	168
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	5e-15
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	5e-12
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	1e-11
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	6e-11
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	1e-10
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	5e-10
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	4e-09
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	2e-07
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	7e-06
2wt7_B	90	Transcription factor MAFB; transcription, transcri	2e-05
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	2e-04
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	4e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-04

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61

 Score = 64.7 bits (158), Expect = 5e-15
 Identities = 21/59 (35%), Positives = 37/59 (62%)

Query: 89  KRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHIL 147
           KR K L RNR +A ++R+++K ++  LE + +DL   N +L   ++ L+NE   L+ +L
Sbjct: 1   KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62

 Score = 57.0 bits (138), Expect = 5e-12
 Identities = 19/59 (32%), Positives = 36/59 (61%)

Query: 89  KRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHIL 147
           K  ++ +RNR++A ++R+RK   +  LE +VK L+ +NSEL    + L+ +   L+  +
Sbjct: 1   KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana} Length = 42

 Score = 55.5 bits (133), Expect = 1e-11
 Identities = 36/40 (90%), Positives = 38/40 (95%)

Query: 110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN 149
           AYL+ELE RVKDLE KNSEL+ERLSTLQNENQMLRHILKN
Sbjct: 3   AYLSELENRVKDLENKNSELEERLSTLQNENQMLRHILKN 42

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55

 Score = 54.0 bits (130), Expect = 6e-11
 Identities = 22/53 (41%), Positives = 33/53 (62%)

Query: 89  KRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQ 141
           KR  RL++NR +A+++R +KK Y+  LE RV  LE +N  L E L  L++   
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYS 53

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63

 Score = 53.6 bits (129), Expect = 1e-10
 Identities = 18/59 (30%), Positives = 30/59 (50%)

Query: 89  KRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHIL 147
           KR  R  RN+++A + R R++   + L+     LE + S L   ++ L  E + L  IL
Sbjct: 2   KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63

 Score = 52.0 bits (125), Expect = 5e-10
 Identities = 21/60 (35%), Positives = 38/60 (63%)

Query: 89  KRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK 148
           K+LK++ +N+ +A + R++K+A    L    K+LE+KN  L ER  +L  E Q L+ +++
Sbjct: 2   KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Length = 87

 Score = 50.4 bits (120), Expect = 4e-09
 Identities = 18/85 (21%), Positives = 39/85 (45%)

Query: 76  QRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLST 135
           + K  ++     ++   R  RN ++ +++R++ K    E + +V +L  +N  L +++  
Sbjct: 2   KSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQ 61

Query: 136 LQNENQMLRHILKNTTASRRGGSGG 160
           L  E   LR++ K         SG 
Sbjct: 62  LSRELSTLRNLFKQLPEPLLASSGH 86

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Length = 78

 Score = 45.7 bits (108), Expect = 2e-07
 Identities = 16/74 (21%), Positives = 37/74 (50%)

Query: 76  QRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLST 135
           + K  ++     ++   R  RN ++ +++R++ K    E + +V +L  +N  L +++  
Sbjct: 2   KSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQ 61

Query: 136 LQNENQMLRHILKN 149
           L  E   LR++ K 
Sbjct: 62  LSRELSTLRNLFKQ 75

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107

 Score = 42.0 bits (98), Expect = 7e-06
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 86  KENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRH 145
            + K+ +R L+NR  A   R ++     ELE +  +L+++  +L    ++++ E   LR 
Sbjct: 34  IQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRS 93

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90

 Score = 40.4 bits (94), Expect = 2e-05
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 76  QRKRGRSPAD-KENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLS 134
           +  RG +  +    K+ +R L+NR  AQ  R ++    + LE     L ++  +L + +S
Sbjct: 13  RHLRGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVS 72

Query: 135 TLQNENQMLRH 145
            L  E    + 
Sbjct: 73  RLARERDAYKV 83

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 17/64 (26%), Positives = 31/64 (48%)

Query: 85  DKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLR 144
             +    KR  +NR + +  R+RK+ +L  LET+V  L+  +S        L+ + + L 
Sbjct: 4   SDQEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLE 63

Query: 145 HILK 148
             L+
Sbjct: 64  EELR 67

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Length = 63

 Score = 36.3 bits (84), Expect = 4e-04
 Identities = 14/54 (25%), Positives = 30/54 (55%)

Query: 85  DKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQN 138
           +  +    +  RN  +A+++R RK   + +LE +V++L  KN  L+  ++ L+ 
Sbjct: 5   ESSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKK 58

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 38.6 bits (90), Expect = 6e-04
 Identities = 13/75 (17%), Positives = 33/75 (44%)

Query: 81  RSPADKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNEN 140
           R  A +E K+LK   R+    ++     +  + +L+ ++ +  ++   L E+++ L+   
Sbjct: 899 RMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITY 958

Query: 141 QMLRHILKNTTASRR 155
                 L++     R
Sbjct: 959 STETEKLRSDVERLR 973

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	99.67
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	99.66
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	99.62
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	99.61
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	99.51
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	99.5
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	99.45
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	99.36
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	99.17
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	99.04
2wt7_B	90	Transcription factor MAFB; transcription, transcri	98.76
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	98.62
1skn_P	92	DNA-binding domain of SKN-1; complex (transcriptio	97.48
2c9l_Y	63	EB1, zebra, BZLF1 trans-activator protein; viral p	96.55
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	96.23
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	96.17
3m48_A	33	General control protein GCN4; leucine zipper, synt	96.06
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	95.97
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	95.85
2bni_A	34	General control protein GCN4; four helix bundle, a	95.52
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	95.43
2kz5_A	91	Transcription factor NF-E2 45 kDa subunit; structu	95.31
2hy6_A	34	General control protein GCN4; protein design, para	95.29
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	95.19
1uo4_A	34	General control protein GCN4; four helix bundle, c	95.13
2wq1_A	33	General control protein GCN4; TAA, nucleus, coiled	95.12
3he5_A	49	Synzip1; heterodimeric coiled-coil, de novo protei	94.75
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	94.47
2r2v_A	34	GCN4 leucine zipper; coiled coils, anti-parallel t	94.33
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	94.14
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	94.08
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	93.84
1fmh_A	33	General control protein GCN4; coiled coil, leucine	93.55
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	93.04
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	93.03
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	91.95
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	91.93
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	91.87
3ra3_B	28	P2F; coiled coil domain, fiber, KIH interactions,	91.71
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	91.51
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	91.13
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	90.92
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	90.75
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	90.53
1a93_B	34	MAX protein, coiled coil, LZ; leucine zipper, 2D s	90.52
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	90.11
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	89.68
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	89.56
1gmj_A	84	ATPase inhibitor; coiled-coil structure, P depende	89.51
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	88.85
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	88.84
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	88.73
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	88.56
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	88.56
1dip_A	78	Delta-sleep-inducing peptide immunoreactive peptid	88.37
1uii_A	83	Geminin; human, DNA replication, cell cycle; 2.00A	88.28
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	88.11
1p9i_A	31	Cortexillin I/GCN4 hybrid peptide; coiled-coil, un	88.05
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	87.78
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	87.51
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	87.11
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	87.05
3m48_A	33	General control protein GCN4; leucine zipper, synt	86.98
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	86.92
2lz1_A	90	Nuclear factor erythroid 2-related factor 2; struc	86.89
2wq1_A	33	General control protein GCN4; TAA, nucleus, coiled	86.51
2wuj_A	57	Septum site-determining protein diviva; bacterial	86.16
1wlq_A	83	Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2z	85.79
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	85.65
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	85.47
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	85.23
2zxx_A	79	Geminin; coiled-coil, cell cycle, coiled coil, DNA	85.23
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	85.09
2wvr_A	209	Geminin; DNA replication license, DNA replication	84.42
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	84.28
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	84.27
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	84.16
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	84.06
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	83.85
1dip_A	78	Delta-sleep-inducing peptide immunoreactive peptid	83.75
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	83.73
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	83.64
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	83.57
1uo4_A	34	General control protein GCN4; four helix bundle, c	83.5
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	83.45
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	83.35
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	83.31
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	83.09
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	82.96
1a93_B	34	MAX protein, coiled coil, LZ; leucine zipper, 2D s	82.89
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	82.52
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	82.25
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	82.06
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	82.06
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	82.02
2j5u_A	255	MREC protein; bacterial cell shape determining pro	81.94
3swy_A	46	Cyclic nucleotide-gated cation channel alpha-3; co	81.87
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	81.84
2bni_A	34	General control protein GCN4; four helix bundle, a	81.72
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	81.71
2hy6_A	34	General control protein GCN4; protein design, para	81.61
3w03_C	184	DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS	81.59
1zme_C	70	Proline utilization transcription activator; compl	81.09
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	81.01
1uii_A	83	Geminin; human, DNA replication, cell cycle; 2.00A	80.81
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	80.59
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	80.34
2oa5_A	110	Hypothetical protein BQLF2; MHR28B, NESG, structur	80.01

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=99.67  E-value=3.1e-16  Score=105.24  Aligned_cols=59  Identities=36%  Similarity=0.590  Sum_probs=57.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957           89 KRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHIL  147 (168)
Q Consensus        89 kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L  147 (168)
                      |+.+|+++||+||++||+||++|+.+||.++..|+.+|..|..+|..|..|+..|+++|
T Consensus         1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l   59 (61)
T 1t2k_D            1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL   59 (61)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46789999999999999999999999999999999999999999999999999999987

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=99.66  E-value=4.6e-16  Score=105.21  Aligned_cols=61  Identities=30%  Similarity=0.474  Sum_probs=58.7

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957           89 KRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN  149 (168)
Q Consensus        89 kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~  149 (168)
                      |+.+|+++||+||++||+||++|+.+|+.+|..|+.+|..|..+|..|..|+..|+.+|..
T Consensus         2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~   62 (63)
T 2wt7_A            2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAA   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6788999999999999999999999999999999999999999999999999999999864

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=99.62  E-value=7.4e-16  Score=103.78  Aligned_cols=60  Identities=32%  Similarity=0.490  Sum_probs=53.2

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957           90 RLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN  149 (168)
Q Consensus        90 r~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~  149 (168)
                      ..+|+++||+||++||+||++|+.+||.+|..|+.+|..|..+|..|..|+..|+++|..
T Consensus         2 ~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~~   61 (62)
T 1jnm_A            2 AERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVMN   61 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            457789999999999999999999999999999999999999999999999999999864

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=99.61  E-value=2e-15  Score=102.19  Aligned_cols=62  Identities=34%  Similarity=0.557  Sum_probs=54.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957           89 KRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT  150 (168)
Q Consensus        89 kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~  150 (168)
                      |+.+++++||+||++||+||++++.+|+.++..|+.+|..|+.+|..|+.|+.+|+++|.++
T Consensus         2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e~   63 (63)
T 1ci6_A            2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEEV   63 (63)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            56788899999999999999999999999999999999999999999999999999999764

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=99.51  E-value=1.1e-13  Score=99.37  Aligned_cols=74  Identities=20%  Similarity=0.306  Sum_probs=62.7

Q ss_pred             CCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 030957           82 SPADKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRR  155 (168)
Q Consensus        82 ~~~e~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~  155 (168)
                      ..+.++++++.|+.+|++||++||+++++...+++.++..|+.+|..|+.+|..|..|+..|+.+|..+...+-
T Consensus         8 ~~dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~~   81 (87)
T 1hjb_A            8 TVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLL   81 (87)
T ss_dssp             --CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             CcCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHh
Confidence            33445677888899999999999999999999999999999999999999999999999999999998776544

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=99.50  E-value=4.1e-14  Score=93.45  Aligned_cols=51  Identities=43%  Similarity=0.632  Sum_probs=47.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957           89 KRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNE  139 (168)
Q Consensus        89 kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~E  139 (168)
                      |+.+|+++||+||++||.||++|+++||.+|..|+.+|..|..++..|..+
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~   51 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDL   51 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999998888754

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=99.45  E-value=1.9e-13  Score=96.26  Aligned_cols=69  Identities=22%  Similarity=0.347  Sum_probs=61.0

Q ss_pred             CCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957           82 SPADKENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT  150 (168)
Q Consensus        82 ~~~e~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~  150 (168)
                      ..+.+++.++.|+.+|++||++||+++++...+++.++..|+.+|..|+.+|..|..|+..|+++|.++
T Consensus         8 ~~dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q~   76 (78)
T 1gu4_A            8 TVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL   76 (78)
T ss_dssp             --CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred             CcccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            444556778888899999999999999999999999999999999999999999999999999988654

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=99.36  E-value=1.3e-12  Score=88.44  Aligned_cols=53  Identities=26%  Similarity=0.399  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957           87 ENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNE  139 (168)
Q Consensus        87 e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~E  139 (168)
                      +++..+++.+||+||++||+||++|+.+|+.+|..|+.+|..|..+|..|..+
T Consensus         7 ~d~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~   59 (63)
T 2dgc_A            7 SDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKL   59 (63)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455556789999999999999999999999999999999988777776654

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=99.17  E-value=1.3e-10  Score=80.17  Aligned_cols=59  Identities=29%  Similarity=0.316  Sum_probs=47.8

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957           91 LKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN  149 (168)
Q Consensus        91 ~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~  149 (168)
                      .+|+.+||.|++.||+||++||.+||.+|.+|+..|..|..++..|..++..|...|..
T Consensus        10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~   68 (70)
T 1gd2_E           10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI   68 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999887777666666666666666555543

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=99.04  E-value=4.3e-10  Score=69.79  Aligned_cols=41  Identities=88%  Similarity=1.152  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN  149 (168)
Q Consensus       109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~  149 (168)
                      |+|+.+||.++++|+..|.+|..+|..|++||+||||.|++
T Consensus         2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~n   42 (42)
T 2oqq_A            2 SAYLSELENRVKDLENKNSELEERLSTLQNENQMLRHILKN   42 (42)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Confidence            68999999999999999999999999999999999999963

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=98.76  E-value=8.6e-08  Score=68.93  Aligned_cols=65  Identities=23%  Similarity=0.275  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957           87 ENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus        87 e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      ..|.+||..+||.+|+-||.||...+..||.++..|..+...|+.++..+..|...+++.+..+.
T Consensus        25 ~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L~   89 (90)
T 2wt7_B           25 RLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKLA   89 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            56788899999999999999999999999999999999999999999999999999999998764

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=98.62  E-value=7.1e-10  Score=82.15  Aligned_cols=66  Identities=23%  Similarity=0.281  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957           86 KENKRLKRLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus        86 ~e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      .+.|.+||..+||.+|+.||.||.+.+.+||.++..|..+...|..+...|..|...|+..+..+.
T Consensus        34 ~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e~L~   99 (107)
T 3a5t_A           34 IQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQ   99 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC----
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            366889999999999999999999999999988888777777777777777776666665555544

>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1

Probab=97.48  E-value=4.6e-05  Score=54.56  Aligned_cols=31  Identities=19%  Similarity=0.404  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 030957           87 ENKRLKRLLRNRVSAQQARERKKAYLNELET  117 (168)
Q Consensus        87 e~kr~rR~~rNR~AA~~sR~RKk~~~~~LE~  117 (168)
                      ..+.++|..+||+||++||+||.+.++.|+.
T Consensus        60 ~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~   90 (92)
T 1skn_P           60 LIRKIRRRGKNKVAARTCRQRRTDRHDKMSH   90 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence            4677888999999999999999999888763

>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y

Probab=96.55  E-value=0.016  Score=37.89  Aligned_cols=38  Identities=24%  Similarity=0.353  Sum_probs=26.1

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957           93 RLLRNRVSAQQARERKKAYLNELETRVKDLERKNSELD  130 (168)
Q Consensus        93 R~~rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~  130 (168)
                      ++.+||+|+++||.|=+..++....-...-..||..|+
T Consensus         5 kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr   42 (63)
T 2c9l_Y            5 KRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLR   42 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHH
Confidence            35899999999999988877665554444444444433

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=96.23  E-value=0.0065  Score=35.84  Aligned_cols=28  Identities=29%  Similarity=0.455  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          110 AYLNELETRVKDLERKNSELDERLSTLQ  137 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~  137 (168)
                      ++|.+||.+|++|-.+|..|..+|..|+
T Consensus         1 eRMnQLE~kVEeLl~~n~~Le~eV~rLk   28 (34)
T 2oxj_A            1 XRMXQLEXKVXELLXKNXHLEXEVXRLK   28 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            3588999999999999988666555543

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=96.17  E-value=0.0068  Score=36.17  Aligned_cols=30  Identities=27%  Similarity=0.494  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          111 YLNELETRVKDLERKNSELDERLSTLQNEN  140 (168)
Q Consensus       111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En  140 (168)
                      +|.+||.+|++|..+|..|..+|..|+..+
T Consensus         2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll   31 (36)
T 1kd8_A            2 EVKQLEAEVEEIESEVWHLENEVARLEKEN   31 (36)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            578999999999999999777776666543

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=96.06  E-value=0.0074  Score=35.42  Aligned_cols=27  Identities=30%  Similarity=0.524  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          111 YLNELETRVKDLERKNSELDERLSTLQ  137 (168)
Q Consensus       111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~  137 (168)
                      +|.+||.+|++|-.+|..|..+|..|.
T Consensus         1 RM~QLE~kVEeLl~~n~~Le~EV~RLk   27 (33)
T 3m48_A            1 RMAQLEAKVEELLSKNWNLENEVARLK   27 (33)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            367899999999999988666665554

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=95.97  E-value=0.018  Score=34.38  Aligned_cols=29  Identities=21%  Similarity=0.424  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          110 AYLNELETRVKDLERKNSELDERLSTLQN  138 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~  138 (168)
                      ++|.+||.+|++|-.+|..|..+|..|+.
T Consensus         1 eRMnQLE~KVEeLl~~~~~Le~eV~RLk~   29 (36)
T 1kd8_B            1 XKVKQLKAKVEELKSKLWHLKNKVARLKK   29 (36)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            35789999999999999887666665543

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=95.85  E-value=0.012  Score=34.58  Aligned_cols=28  Identities=4%  Similarity=0.148  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          110 AYLNELETRVKDLERKNSELDERLSTLQ  137 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~  137 (168)
                      ++|.+||.+|++|-.+|..|..+|..|+
T Consensus         1 eRMnQLEdKVEeLl~~~~~Le~EV~RLk   28 (34)
T 3c3f_A            1 XRMXQIEXKLEXILSXLYHXENEXARIX   28 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            3588999999999999988666555543

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=95.52  E-value=0.018  Score=33.94  Aligned_cols=28  Identities=11%  Similarity=0.375  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          110 AYLNELETRVKDLERKNSELDERLSTLQ  137 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~  137 (168)
                      ++|.+||.+|++|-.+|..|..+|..|.
T Consensus         1 eRMnQLEdKvEeLl~~~~~L~~EV~RLk   28 (34)
T 2bni_A            1 XRMKQIEDKLEEILSKGHHICNELARIK   28 (34)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHccHHHHHHHHHHH
Confidence            3578999999999999988666555543

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=95.43  E-value=0.031  Score=32.71  Aligned_cols=26  Identities=12%  Similarity=0.386  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          112 LNELETRVKDLERKNSELDERLSTLQ  137 (168)
Q Consensus       112 ~~~LE~~v~~Le~eN~~L~~~v~~L~  137 (168)
                      |.+||.+|++|-.+|..|..+|..|+
T Consensus         2 MnQLEdKvEeLl~~~~~Le~EV~RLk   27 (33)
T 3c3g_A            2 MKXIEXKLXEIXSKXYHXENXLARIK   27 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            78999999999999988666555543

>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=95.31  E-value=0.0011  Score=47.43  Aligned_cols=24  Identities=33%  Similarity=0.418  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHH
Q 030957           87 ENKRLKRLLRNRVSAQQARERKKA  110 (168)
Q Consensus        87 e~kr~rR~~rNR~AA~~sR~RKk~  110 (168)
                      ..+.+||+-+||+||+.||+||.+
T Consensus        64 lIrdiRRRgKNKvAAqnCRKRKld   87 (91)
T 2kz5_A           64 LVRDIRRRGKNKVAAQNYRKRKLE   87 (91)
T ss_dssp             HHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHH
Confidence            467788999999999999999854

>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A

Probab=95.29  E-value=0.024  Score=33.39  Aligned_cols=27  Identities=22%  Similarity=0.361  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          111 YLNELETRVKDLERKNSELDERLSTLQ  137 (168)
Q Consensus       111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~  137 (168)
                      +|.+||.+|++|-.+|..|..+|..|+
T Consensus         2 RMnQLEdkVEeLl~~~~~Le~eV~RL~   28 (34)
T 2hy6_A            2 KVKQLADAVEELASANYHLANAVARLA   28 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            578999999999999988666555544

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=95.19  E-value=0.044  Score=35.28  Aligned_cols=33  Identities=21%  Similarity=0.346  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          117 TRVKDLERKNSELDERLSTLQNENQMLRHILKN  149 (168)
Q Consensus       117 ~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~  149 (168)
                      ..++.|..+|.+|+.++..|..++..|+.+|.+
T Consensus        19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~   51 (53)
T 2yy0_A           19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ   51 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            578889999999999999999999999998864

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=95.13  E-value=0.029  Score=33.09  Aligned_cols=27  Identities=11%  Similarity=0.343  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          111 YLNELETRVKDLERKNSELDERLSTLQ  137 (168)
Q Consensus       111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~  137 (168)
                      +|.+||.+|++|-.+|..|..+|..|.
T Consensus         2 RM~QLEdKVEeLl~~n~~Le~EV~RLk   28 (34)
T 1uo4_A            2 RMKQIEDKGEEILSKLYHIENELARIK   28 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            478899999999988888655555443

>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...

Probab=95.12  E-value=0.045  Score=32.03  Aligned_cols=26  Identities=12%  Similarity=0.222  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          112 LNELETRVKDLERKNSELDERLSTLQ  137 (168)
Q Consensus       112 ~~~LE~~v~~Le~eN~~L~~~v~~L~  137 (168)
                      |.+||.+|++|-.+|..|..+|..|.
T Consensus         2 MnQLEdKVEell~~~~~le~EV~Rl~   27 (33)
T 2wq1_A            2 MKQLEDKIEENTSKIYHNTNEIARNT   27 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            68899999988888888655555443

>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=94.75  E-value=0.091  Score=32.50  Aligned_cols=37  Identities=30%  Similarity=0.439  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 030957          111 YLNELETRVKDLERKNSELDE-------RLSTLQNENQMLRHIL  147 (168)
Q Consensus       111 ~~~~LE~~v~~Le~eN~~L~~-------~v~~L~~En~~Lr~~L  147 (168)
                      .+.+||.+|..|+.+|..|+.       -|..|+.|+..||..+
T Consensus         4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkki   47 (49)
T 3he5_A            4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI   47 (49)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence            456788888888888888765       4566777777777665

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=94.47  E-value=0.047  Score=37.15  Aligned_cols=36  Identities=17%  Similarity=0.301  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLR  144 (168)
Q Consensus       109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr  144 (168)
                      ...+.+|+.....|..+|..|+.+|..|..||..|+
T Consensus        35 E~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr   70 (70)
T 1gd2_E           35 ETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK   70 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            445678888888888889999999999988888765

>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1

Probab=94.33  E-value=0.083  Score=31.10  Aligned_cols=31  Identities=16%  Similarity=0.235  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK  148 (168)
Q Consensus       111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~  148 (168)
                      .|.+||.+|++|-.+|..       |++|...|+.+|.
T Consensus         2 RMnQledKvEel~~~~~~-------l~nEv~Rl~~lLg   32 (34)
T 2r2v_A            2 KLKQVADKLEEVASKLYH-------NANELARVAKLLG   32 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHH-------HHHHHHHHHHHhc
Confidence            478899999988888777       5555555666653

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=94.14  E-value=0.092  Score=36.72  Aligned_cols=41  Identities=22%  Similarity=0.407  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcc
Q 030957          112 LNELETRVKDLERKNSELDERLST-------LQNENQMLRHILKNTTA  152 (168)
Q Consensus       112 ~~~LE~~v~~Le~eN~~L~~~v~~-------L~~En~~Lr~~L~~~~~  152 (168)
                      |.-|+.++++|..+|..|..++..       |..||..|++.......
T Consensus        22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~   69 (81)
T 2jee_A           22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE   69 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            444555566666666665555554       77788888877665443

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=94.08  E-value=0.21  Score=34.42  Aligned_cols=47  Identities=26%  Similarity=0.226  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 030957          110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRG  156 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~  156 (168)
                      ++|.+||.++..++.-..+|...|...+.++..|..+|..+...+..
T Consensus        14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~   60 (78)
T 3efg_A           14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK   60 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57889999999998888888888777777777777777777765544

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=93.84  E-value=0.34  Score=30.93  Aligned_cols=42  Identities=26%  Similarity=0.358  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957          110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      ..+.+|..++..|...|..|-..+.....++..|+.+|..+.
T Consensus         9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La   50 (51)
T 3m91_A            9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG   50 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            445678889999999999999999999999999999998775

>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A

Probab=93.55  E-value=0.15  Score=29.13  Aligned_cols=29  Identities=28%  Similarity=0.486  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          112 LNELETRVKDLERKNSELDERLSTLQNEN  140 (168)
Q Consensus       112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En  140 (168)
                      +.+||.+|...+.+|-+|..++.+|+.|+
T Consensus         3 vaqlekevaqaeaenyqleqevaqlehec   31 (33)
T 1fmh_A            3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC   31 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence            56899999999999999999999998774

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=93.04  E-value=0.13  Score=35.19  Aligned_cols=35  Identities=11%  Similarity=0.341  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957          110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      .||..|+.++.       .|..+++.|..+|..|+++|..+.
T Consensus        47 ~YI~~L~~~~~-------~l~~e~~~L~~~~~~L~~~l~~L~   81 (83)
T 1nkp_B           47 EYIQYMRRKNH-------THQQDIDDLKRQNALLEQQVRALG   81 (83)
T ss_dssp             HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45555555444       555666667777777777776654

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=93.03  E-value=0.42  Score=30.58  Aligned_cols=41  Identities=27%  Similarity=0.459  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcc
Q 030957          112 LNELETRVKDLERKNSELDERLS-------TLQNENQMLRHILKNTTA  152 (168)
Q Consensus       112 ~~~LE~~v~~Le~eN~~L~~~v~-------~L~~En~~Lr~~L~~~~~  152 (168)
                      .++|-.+|+.|..||..|++++.       .|+.|---++..|+.+..
T Consensus         5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~   52 (54)
T 1deb_A            5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG   52 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence            46788889999999999887654       688888888888887754

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=91.95  E-value=0.36  Score=33.23  Aligned_cols=34  Identities=24%  Similarity=0.319  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          108 KKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK  148 (168)
Q Consensus       108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~  148 (168)
                      -.+||..|+.+...|..++..       |..++..|+++|.
T Consensus        45 A~~yI~~L~~~~~~l~~e~~~-------L~~e~~~L~~~L~   78 (80)
T 1nlw_A           45 AKLHIKKLEDSDRKAVHQIDQ-------LQREQRHLKRQLE   78 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence            347777777777766666555       5555555555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=91.93  E-value=1.3  Score=39.17  Aligned_cols=53  Identities=19%  Similarity=0.283  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 030957          102 QQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASR  154 (168)
Q Consensus       102 ~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~  154 (168)
                      .+..+.+++.++.|+.++..|+......+.++..|..|+..+++.|+++-...
T Consensus       529 ~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~  581 (597)
T 3oja_B          529 RTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK  581 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33344555666777788888888888888888889999888888888776543

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=91.87  E-value=0.68  Score=31.54  Aligned_cols=23  Identities=13%  Similarity=-0.009  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Q 030957          128 ELDERLSTLQNENQMLRHILKNT  150 (168)
Q Consensus       128 ~L~~~v~~L~~En~~Lr~~L~~~  150 (168)
                      .|..++..|..|+..|+.....+
T Consensus        51 ~L~~~~~~l~~e~~~L~~~~~~L   73 (83)
T 1nkp_B           51 YMRRKNHTHQQDIDDLKRQNALL   73 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444443

>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}

Probab=91.71  E-value=0.15  Score=28.11  Aligned_cols=26  Identities=27%  Similarity=0.519  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          119 VKDLERKNSELDERLSTLQNENQMLR  144 (168)
Q Consensus       119 v~~Le~eN~~L~~~v~~L~~En~~Lr  144 (168)
                      +..|.+.|..|+++|..|+-|+..|.
T Consensus         2 irrlkqknarlkqeiaaleyeiaale   27 (28)
T 3ra3_B            2 IRRLKQKNARLKQEIAALEYEIAALE   27 (28)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHhc
Confidence            44677888888888888888887764

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=91.51  E-value=0.35  Score=33.77  Aligned_cols=30  Identities=17%  Similarity=0.284  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957          122 LERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus       122 Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      |+.++..|..++..|..+|..|+.+|..+.
T Consensus        57 L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~   86 (88)
T 1nkp_A           57 VQAEEQKLISEEDLLRKRREQLKHKLEQLG   86 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344444555555667777777777777664

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=91.13  E-value=0.3  Score=40.69  Aligned_cols=44  Identities=25%  Similarity=0.338  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      ...+.+|+.++..|..+|..|...+..++.|+..|+.+|..+..
T Consensus        53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s   96 (251)
T 3m9b_A           53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ   96 (251)
T ss_dssp             CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            44577889999999999999999999999999999999988863

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=90.92  E-value=1.3  Score=32.96  Aligned_cols=37  Identities=27%  Similarity=0.414  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILK  148 (168)
Q Consensus       112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~  148 (168)
                      +++|+.++..|..+...+..+|+.|+.+|..|...+.
T Consensus        73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~  109 (121)
T 3mq7_A           73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA  109 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence            6666666666666666666666666666666665553

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=90.75  E-value=0.41  Score=32.92  Aligned_cols=30  Identities=13%  Similarity=0.269  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          106 ERKKAYLNELETRVKDLERKNSELDERLST  135 (168)
Q Consensus       106 ~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~  135 (168)
                      ..=+.....|+.+...|..+|..|+.++..
T Consensus        50 ~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~   79 (80)
T 1nlw_A           50 KKLEDSDRKAVHQIDQLQREQRHLKRQLEK   79 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333444455666666666666666666554

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=90.53  E-value=0.41  Score=32.69  Aligned_cols=36  Identities=28%  Similarity=0.302  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          108 KKAYLNELETRVKDLERKNSELDERLSTLQNENQML  143 (168)
Q Consensus       108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~L  143 (168)
                      |-+.+...+..++.|+.+..++...|..|+.++..+
T Consensus        31 K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf   66 (72)
T 3nmd_A           31 KIEELRQRDALIDELELELDQKDELIQMLQNELDKY   66 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444444445555554444444444444444444433

>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B

Probab=90.52  E-value=0.6  Score=27.49  Aligned_cols=29  Identities=21%  Similarity=0.455  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957          122 LERKNSELDERLSTLQNENQMLRHILKNT  150 (168)
Q Consensus       122 Le~eN~~L~~~v~~L~~En~~Lr~~L~~~  150 (168)
                      +..+|......|+.|..+|..|..++..+
T Consensus         5 mRrKn~a~qqDIddlkrQN~~Le~Qir~l   33 (34)
T 1a93_B            5 MRRKNDTHQQDIDDLKRQNALLEQQVRAL   33 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence            34566777777777777777777776543

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=90.11  E-value=3.3  Score=28.98  Aligned_cols=53  Identities=26%  Similarity=0.268  Sum_probs=36.5

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957           96 RNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK  148 (168)
Q Consensus        96 rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~  148 (168)
                      +-|..++.-=.--...+.+|+.+...|..++..|..++..|..-...|...|.
T Consensus        29 rSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~~   81 (87)
T 1hjb_A           29 KSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLL   81 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHh
Confidence            44544444445566778999999999999999999999999877766665543

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=89.68  E-value=1.6  Score=30.28  Aligned_cols=37  Identities=19%  Similarity=0.286  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          108 KKAYLNELETRVKDLERKNSELDERLSTLQNENQMLR  144 (168)
Q Consensus       108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr  144 (168)
                      --+||..|+.+...|..+...|+.+...|..++..|+
T Consensus        50 A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~   86 (88)
T 1nkp_A           50 ATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG   86 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4589999999999988888888888888888888775

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=89.56  E-value=1.4  Score=30.67  Aligned_cols=31  Identities=19%  Similarity=0.319  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          112 LNELETRVKDLERKNSELDERLSTLQNENQM  142 (168)
Q Consensus       112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~  142 (168)
                      ++.||.+|..+-..+.-|+-+|+.|..+|..
T Consensus         8 leqLE~KIq~avdtI~lLqmEieELKekN~~   38 (81)
T 2jee_A            8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNS   38 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555444333333333333333333

>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A

Probab=89.51  E-value=3.7  Score=28.69  Aligned_cols=29  Identities=21%  Similarity=0.245  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957          123 ERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus       123 e~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      +.+......+|..|+.++..++..|.++.
T Consensus        50 ~~el~~h~~ei~~le~~i~rhk~~i~~l~   78 (84)
T 1gmj_A           50 ENEISHHAKEIERLQKEIERHKQSIKKLK   78 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44445555566666666666666666553

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=88.85  E-value=0.96  Score=26.82  Aligned_cols=32  Identities=31%  Similarity=0.381  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          118 RVKDLERKNSELDERLSTLQNENQMLRHILKN  149 (168)
Q Consensus       118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~  149 (168)
                      ++.+|+....+|..+...|++|...|+.+|..
T Consensus         2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~   33 (36)
T 1kd8_B            2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNAE   33 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            46788888888888888888888888888764

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=88.84  E-value=0.74  Score=31.56  Aligned_cols=25  Identities=24%  Similarity=0.286  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957          127 SELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus       127 ~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      ..|+.++..|..|+..|+..+++..
T Consensus        53 ~~Lq~~~~~L~~e~~~L~~~~~~~~   77 (82)
T 1am9_A           53 RFLQHSNQKLKQENLSLRTAVHKSK   77 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4566666677777777777666543

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=88.73  E-value=1.6  Score=28.80  Aligned_cols=30  Identities=40%  Similarity=0.535  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 030957          115 LETRVKDLERKNSEL-------DERLSTLQNENQMLR  144 (168)
Q Consensus       115 LE~~v~~Le~eN~~L-------~~~v~~L~~En~~Lr  144 (168)
                      -|.++..|.+-|..|       +..|..|+.||..||
T Consensus        25 SeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr   61 (63)
T 2w6a_A           25 SEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence            345555555555554       456666777777666

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=88.56  E-value=1.1  Score=31.69  Aligned_cols=39  Identities=21%  Similarity=0.321  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHIL  147 (168)
Q Consensus       109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L  147 (168)
                      ..||.+|...+..+..++..|..++..|..+...|+..|
T Consensus        55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL   93 (93)
T 3s4r_A           55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL   93 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            456666666666666666666666666666666666543

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=88.56  E-value=2.4  Score=33.23  Aligned_cols=49  Identities=16%  Similarity=0.418  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957          102 QQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT  150 (168)
Q Consensus       102 ~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~  150 (168)
                      ++.|.+-.+.+.+|+.++..|..+...++..+..+..+|..|-..|..+
T Consensus        82 r~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~l  130 (168)
T 3o0z_A           82 RRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHS  130 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556677777888888888887777777766666666666666555443

>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1

Probab=88.37  E-value=0.45  Score=32.73  Aligned_cols=30  Identities=33%  Similarity=0.442  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          118 RVKDLERKNSELDERLSTLQNENQMLRHIL  147 (168)
Q Consensus       118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L  147 (168)
                      +|+.|.....+|..++..|+.||..||...
T Consensus        16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~a   45 (78)
T 1dip_A           16 EVEILKEQIRELVEKNSQLERENTLLKTLA   45 (78)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            466677777777777778888999998764

>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1

Probab=88.28  E-value=2.6  Score=29.40  Aligned_cols=31  Identities=19%  Similarity=0.378  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          118 RVKDLERKNSELDERLSTLQNENQMLRHILK  148 (168)
Q Consensus       118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~  148 (168)
                      +...|-..+..|..+|..|..+|..|+.+..
T Consensus        47 EN~~Lh~~ie~l~eEi~~lk~en~eL~elae   77 (83)
T 1uii_A           47 ENEKLHKEIEQKDNEIARLKKENKELAEVAE   77 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555555555555555555443

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=88.11  E-value=1.4  Score=31.81  Aligned_cols=25  Identities=36%  Similarity=0.416  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          128 ELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       128 ~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      +++..++.|+.||..||..|..+..
T Consensus        72 ~~~~~~e~Lq~E~erLr~~v~~lEe   96 (100)
T 1go4_E           72 RLREDHSQLQAECERLRGLLRAMER   96 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4567788888888888888877654

>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1

Probab=88.05  E-value=0.83  Score=25.70  Aligned_cols=26  Identities=23%  Similarity=0.438  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          113 NELETRVKDLERKNSELDERLSTLQN  138 (168)
Q Consensus       113 ~~LE~~v~~Le~eN~~L~~~v~~L~~  138 (168)
                      ++|..-+..|+.+|.+|+.+++.|..
T Consensus         2 dqlnallasleaenkqlkakveella   27 (31)
T 1p9i_A            2 DQLNALLASLEAENKQLKAKVEELLA   27 (31)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556667777888888877777654

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=87.78  E-value=5.2  Score=27.66  Aligned_cols=42  Identities=14%  Similarity=0.152  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957          110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      .-+-+|..++..|..+...|+-+|+.+..++..|+++..++.
T Consensus        20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y   61 (83)
T 2xdj_A           20 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIL   61 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            445678888889999999999999999998888888776655

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=87.51  E-value=2.5  Score=29.74  Aligned_cols=45  Identities=18%  Similarity=0.289  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          108 KKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       108 Kk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      +.+.+..|+.+.+.++.+...|..++..+..+...|+..|..+-.
T Consensus        68 ~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~  112 (117)
T 2zqm_A           68 KDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR  112 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            345566777777777888888888888888888888888877664

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=87.11  E-value=1.2  Score=26.02  Aligned_cols=30  Identities=30%  Similarity=0.391  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          118 RVKDLERKNSELDERLSTLQNENQMLRHIL  147 (168)
Q Consensus       118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L  147 (168)
                      +..+|+....+|-.+...|+.|+..|+.+|
T Consensus         2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ll   31 (34)
T 2oxj_A            2 RMXQLEXKVXELLXKNXHLEXEVXRLKXLV   31 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            345677777777777777777777777666

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=87.05  E-value=1.7  Score=24.74  Aligned_cols=27  Identities=19%  Similarity=0.364  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          119 VKDLERKNSELDERLSTLQNENQMLRH  145 (168)
Q Consensus       119 v~~Le~eN~~L~~~v~~L~~En~~Lr~  145 (168)
                      +..|.++...|+.+|..|.-|+..|+|
T Consensus         4 iaalkqeiaalkkeiaalkfeiaalkq   30 (33)
T 4dzn_A            4 IAALKQEIAALKKEIAALKFEIAALKQ   30 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            444555555555555555555555554

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=86.98  E-value=0.81  Score=26.70  Aligned_cols=28  Identities=32%  Similarity=0.362  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          120 KDLERKNSELDERLSTLQNENQMLRHIL  147 (168)
Q Consensus       120 ~~Le~eN~~L~~~v~~L~~En~~Lr~~L  147 (168)
                      .+|+.+..+|..+...|++|...|+..|
T Consensus         3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll   30 (33)
T 3m48_A            3 AQLEAKVEELLSKNWNLENEVARLKKLV   30 (33)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            4566666677666677777777666665

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=86.92  E-value=0.99  Score=26.77  Aligned_cols=32  Identities=28%  Similarity=0.322  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          118 RVKDLERKNSELDERLSTLQNENQMLRHILKN  149 (168)
Q Consensus       118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~  149 (168)
                      ++.+|+.+..+|..+...|++|...|+..|..
T Consensus         2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~   33 (36)
T 1kd8_A            2 EVKQLEAEVEEIESEVWHLENEVARLEKENAE   33 (36)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence            35678888888888888888888888887754

>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=86.89  E-value=0.0078  Score=42.88  Aligned_cols=24  Identities=33%  Similarity=0.447  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHH
Q 030957           87 ENKRLKRLLRNRVSAQQARERKKA  110 (168)
Q Consensus        87 e~kr~rR~~rNR~AA~~sR~RKk~  110 (168)
                      -.+.++|.-+||+||+.||.||..
T Consensus        64 lIrdiRRRgKNkvAAqnCRKRKld   87 (90)
T 2lz1_A           64 LIRDIRRRGKNKVAAQNCRKRKLE   87 (90)
T ss_dssp             HHHHHHHHSCSCCCCCCCSCCCCS
T ss_pred             HHHHHHHhhhhHHHHHHcchhhcc
Confidence            356778889999999999998753

>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...

Probab=86.51  E-value=1.4  Score=25.61  Aligned_cols=29  Identities=24%  Similarity=0.225  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          119 VKDLERKNSELDERLSTLQNENQMLRHIL  147 (168)
Q Consensus       119 v~~Le~eN~~L~~~v~~L~~En~~Lr~~L  147 (168)
                      ..+|+.+..+|-.+...|++|...|+.+|
T Consensus         2 MnQLEdKVEell~~~~~le~EV~Rl~~ll   30 (33)
T 2wq1_A            2 MKQLEDKIEENTSKIYHNTNEIARNTKLV   30 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            45778888888888888888888888776

>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A

Probab=86.16  E-value=0.82  Score=29.40  Aligned_cols=29  Identities=21%  Similarity=0.454  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          110 AYLNELETRVKDLERKNSELDERLSTLQN  138 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~  138 (168)
                      ++++.+...+..|..+|..|+.++..|+.
T Consensus        27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~   55 (57)
T 2wuj_A           27 EFLAQVRKDYEIVLRKKTELEAKVNELDE   55 (57)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45666666677677777776666666554

>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*

Probab=85.79  E-value=3.5  Score=28.77  Aligned_cols=23  Identities=26%  Similarity=0.434  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 030957          122 LERKNSELDERLSTLQNENQMLR  144 (168)
Q Consensus       122 Le~eN~~L~~~v~~L~~En~~Lr  144 (168)
                      |......+..+|..|..||..|+
T Consensus        43 Lh~~ie~~~eEi~~Lk~en~~L~   65 (83)
T 1wlq_A           43 LHKEIEQKDSEIARLRKENKDLA   65 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444444444433

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=85.65  E-value=1.7  Score=25.47  Aligned_cols=31  Identities=23%  Similarity=0.321  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          118 RVKDLERKNSELDERLSTLQNENQMLRHILK  148 (168)
Q Consensus       118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~  148 (168)
                      +..+|+.+..+|-.+...|++|...|+.+|.
T Consensus         2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ll~   32 (34)
T 3c3f_A            2 RMXQIEXKLEXILSXLYHXENEXARIXKLLX   32 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            3567777777888888888888888877763

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=85.47  E-value=9.7  Score=29.31  Aligned_cols=40  Identities=20%  Similarity=0.194  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN  149 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~  149 (168)
                      .-++.|..++..|.-++..|..++..|+.||..|.+++-.
T Consensus        96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~  135 (152)
T 3a7p_A           96 KNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK  135 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677777777888888888888999999888877643

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=85.23  E-value=1.4  Score=28.90  Aligned_cols=26  Identities=15%  Similarity=0.287  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957          126 NSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus       126 N~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      ...|..+|..|..+|..|+..+..+.
T Consensus        32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr   57 (63)
T 2dgc_A           32 MKQLEDKVEELLSKNYHLENEVARLK   57 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555444

>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}

Probab=85.23  E-value=3.1  Score=28.77  Aligned_cols=26  Identities=23%  Similarity=0.414  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          122 LERKNSELDERLSTLQNENQMLRHIL  147 (168)
Q Consensus       122 Le~eN~~L~~~v~~L~~En~~Lr~~L  147 (168)
                      |-.+...+..+|..|+.||..|+..+
T Consensus        39 Lh~~ie~~~eEi~~LkeEN~~L~el~   64 (79)
T 2zxx_A           39 LHKEIEQKDSEIARLRKENKDLAEVA   64 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444433

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=85.09  E-value=1.7  Score=27.75  Aligned_cols=30  Identities=27%  Similarity=0.311  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 030957          125 KNSELDERLSTLQNENQMLRHILKNTTASR  154 (168)
Q Consensus       125 eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~  154 (168)
                      ....|..+|..|+.||..|+.+|..+....
T Consensus        23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~   52 (55)
T 1dh3_A           23 YVKSLENRVAVLENQNKTLIEELKALKDLY   52 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345677788888889999988888877543

>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}

Probab=84.42  E-value=3.7  Score=33.13  Aligned_cols=36  Identities=17%  Similarity=0.421  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957          112 LNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus       112 ~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      |+.|+.++..|+.+|.+|+.    |..+.++|-..|..|.
T Consensus       124 ie~l~eEi~~LkeEn~eLke----Lae~~q~la~vi~~l~  159 (209)
T 2wvr_A          124 IEQKDNEIARLKKENKELAE----VAEHVQYMAELIERLN  159 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence            34444444444444444443    2333344444554444

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=84.28  E-value=6  Score=29.17  Aligned_cols=51  Identities=16%  Similarity=0.225  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          102 QQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       102 ~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      ......-..||.+|+.+|..|+.++.+-+........||..||..+..+..
T Consensus        32 e~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~   82 (120)
T 3i00_A           32 ENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR   82 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666778999999999999999999988888888999999998887643

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=84.27  E-value=2.1  Score=24.88  Aligned_cols=30  Identities=20%  Similarity=0.345  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          119 VKDLERKNSELDERLSTLQNENQMLRHILK  148 (168)
Q Consensus       119 v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~  148 (168)
                      ..+|+.+..+|-.+-..|++|...|+.+|.
T Consensus         2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL~   31 (33)
T 3c3g_A            2 MKXIEXKLXEIXSKXYHXENXLARIKXLLX   31 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            356677777777777777777777777663

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=84.16  E-value=8  Score=26.43  Aligned_cols=43  Identities=28%  Similarity=0.350  Sum_probs=30.3

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957           96 RNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQN  138 (168)
Q Consensus        96 rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~  138 (168)
                      +-|+.++.-=.--...+.+|+.+...|..++..|..++..|..
T Consensus        29 rSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~   71 (78)
T 1gu4_A           29 KSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN   71 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455554444555667788888888888888888888887763

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=84.06  E-value=2.1  Score=30.90  Aligned_cols=28  Identities=29%  Similarity=0.420  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          111 YLNELETRVKDLERKNSELDERLSTLQN  138 (168)
Q Consensus       111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~  138 (168)
                      .+..|..+++.|+.+|..|+++++.|+.
T Consensus        13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~   40 (100)
T 1go4_E           13 EADTLRLKVEELEGERSRLEEEKRMLEA   40 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666666666665555555443

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=83.85  E-value=11  Score=28.11  Aligned_cols=37  Identities=11%  Similarity=0.157  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957          114 ELETRVKDLERKNSELDERLSTLQNENQMLRHILKNT  150 (168)
Q Consensus       114 ~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~  150 (168)
                      .|-.++..+.-++..+..++..|..++..|..++..+
T Consensus        93 ~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l  129 (138)
T 3hnw_A           93 DLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL  129 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333444444444444555554444443

>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1

Probab=83.75  E-value=1.3  Score=30.40  Aligned_cols=23  Identities=35%  Similarity=0.466  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 030957          109 KAYLNELETRVKDLERKNSELDE  131 (168)
Q Consensus       109 k~~~~~LE~~v~~Le~eN~~L~~  131 (168)
                      |+.|.+|+.++..|+.||.-|+.
T Consensus        21 Ke~I~EL~e~~~qLE~EN~~Lk~   43 (78)
T 1dip_A           21 KEQIRELVEKNSQLERENTLLKT   43 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777777777777776664

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=83.73  E-value=2.1  Score=26.20  Aligned_cols=24  Identities=33%  Similarity=0.392  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          110 AYLNELETRVKDLERKNSELDERL  133 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v  133 (168)
                      ..+.+||.++..|+.||.-|++.+
T Consensus        17 ~~naeLEervstLq~EN~mLRqvl   40 (42)
T 2oqq_A           17 NKNSELEERLSTLQNENQMLRHIL   40 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHh
Confidence            345788888888888888887755

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=83.64  E-value=9.7  Score=32.87  Aligned_cols=51  Identities=10%  Similarity=0.061  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957          101 AQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus       101 A~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      -+.-|++.+.+++....+++.|.++|+.|+..+..+..+...-++.++.+.
T Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (487)
T 3oja_A          426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELV  476 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence            344555666677777777777777777777777777777666666665543

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=83.57  E-value=4.6  Score=27.96  Aligned_cols=41  Identities=10%  Similarity=0.261  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN  149 (168)
Q Consensus       109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~  149 (168)
                      .+.+..|+.+.+.++.+...|..++..++.+...|+..|..
T Consensus        64 ~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~  104 (107)
T 1fxk_A           64 DELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE  104 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666666666666667777777777777777766654

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=83.50  E-value=1.6  Score=25.56  Aligned_cols=31  Identities=29%  Similarity=0.498  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          118 RVKDLERKNSELDERLSTLQNENQMLRHILK  148 (168)
Q Consensus       118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~  148 (168)
                      +..+|+.+..+|-.+...|++|...|+..|.
T Consensus         2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~LL~   32 (34)
T 1uo4_A            2 RMKQIEDKGEEILSKLYHIENELARIKKLLG   32 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence            3456777777777777777777777777663

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=83.45  E-value=3.5  Score=30.55  Aligned_cols=43  Identities=19%  Similarity=0.241  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 030957          116 ETRVKDLERKNSELDERLSTLQNENQMLRHILKNTTASRRGGS  158 (168)
Q Consensus       116 E~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~~~~~~~  158 (168)
                      +.+|++|+.|+..|..++..+..|...||.....+...+....
T Consensus        70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~~  112 (121)
T 3mq7_A           70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADKK  112 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhcc
Confidence            4458888888888888888888899999888887776655443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=83.35  E-value=6.9  Score=38.28  Aligned_cols=23  Identities=17%  Similarity=0.326  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Q 030957          129 LDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus       129 L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      |..+|..|+.||..|++++.++.
T Consensus      1021 L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A         1021 TEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455556666666666665554

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=83.31  E-value=9.2  Score=26.50  Aligned_cols=48  Identities=19%  Similarity=0.340  Sum_probs=27.2

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957           96 RNRVSAQQARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQML  143 (168)
Q Consensus        96 rNR~AA~~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~L  143 (168)
                      +.+.+-+.-=.+=+.-...++.++.+.+..|..|..++..|+.+...|
T Consensus        24 qAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel   71 (81)
T 1wt6_A           24 LTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL   71 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333344445555666677777777777666666666555554

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=83.09  E-value=4.9  Score=27.81  Aligned_cols=46  Identities=11%  Similarity=0.148  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          103 QARERKKAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK  148 (168)
Q Consensus       103 ~sR~RKk~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~  148 (168)
                      ++---=...++.|..+|..|...+.++.-+|..|......+-.-|.
T Consensus        20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD   65 (83)
T 2xdj_A           20 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID   65 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334556678888889988888888888888888776655555443

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=82.96  E-value=4.9  Score=30.19  Aligned_cols=21  Identities=10%  Similarity=0.105  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 030957          130 DERLSTLQNENQMLRHILKNT  150 (168)
Q Consensus       130 ~~~v~~L~~En~~Lr~~L~~~  150 (168)
                      +.+++.+..++..|+..+..+
T Consensus       102 ~~k~e~~~~e~~~l~~~~~~l  122 (138)
T 3hnw_A          102 QIKAESSAKEIKELKSEINKY  122 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444433

>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B

Probab=82.89  E-value=2.1  Score=25.13  Aligned_cols=25  Identities=24%  Similarity=0.528  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          113 NELETRVKDLERKNSELDERLSTLQ  137 (168)
Q Consensus       113 ~~LE~~v~~Le~eN~~L~~~v~~L~  137 (168)
                      ......+.+|+.+|..|..+|..|+
T Consensus        10 ~a~qqDIddlkrQN~~Le~Qir~le   34 (34)
T 1a93_B           10 DTHQQDIDDLKRQNALLEQQVRALX   34 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HhhHhhHHHHHHHHHHHHHHHHhcC
Confidence            5667788888888888888876653

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=82.52  E-value=3.4  Score=26.65  Aligned_cols=35  Identities=29%  Similarity=0.367  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030957          118 RVKDLERKNSELDERLSTLQNENQMLRHILKNTTA  152 (168)
Q Consensus       118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~~  152 (168)
                      .+..|+.+...|..+...|..++..|+..+..|..
T Consensus        23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~   57 (62)
T 1jnm_A           23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ   57 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556667777777777777777777777666654

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=82.25  E-value=5.9  Score=27.48  Aligned_cols=41  Identities=20%  Similarity=0.283  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKN  149 (168)
Q Consensus       109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~  149 (168)
                      -+.|.+|--+|.+|+++-.+...++..-..|+..|+++|..
T Consensus        25 ~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~   65 (81)
T 3qh9_A           25 LQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVAL   65 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            35677777788888777777777777777777777777643

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=82.06  E-value=9.3  Score=27.53  Aligned_cols=16  Identities=31%  Similarity=0.225  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHH
Q 030957          131 ERLSTLQNENQMLRHI  146 (168)
Q Consensus       131 ~~v~~L~~En~~Lr~~  146 (168)
                      .+|..|..||+.|++.
T Consensus        72 ~everL~~ENq~L~~e   87 (104)
T 3s9g_A           72 LELDRLRAENLQLLTE   87 (104)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444444444444443

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=82.06  E-value=4  Score=26.17  Aligned_cols=33  Identities=30%  Similarity=0.418  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957          119 VKDLERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus       119 v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      +..|+.+...|..+...|..++..|+..+..+.
T Consensus        24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk   56 (61)
T 1t2k_D           24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK   56 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556666666666666666666666655544

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=82.02  E-value=1.9  Score=27.59  Aligned_cols=26  Identities=27%  Similarity=0.404  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957          126 NSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus       126 N~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      ..+|-.+|+.|..||..||+.|....
T Consensus         5 YdQL~~QVe~Lk~ENshLrrEL~dNS   30 (54)
T 1deb_A            5 YDQLLKQVEALKMENSNLRQELEDNS   30 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhH
Confidence            35788999999999999999998754

>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}

Probab=81.94  E-value=0.59  Score=38.40  Aligned_cols=36  Identities=25%  Similarity=0.349  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 030957          113 NELETRVKDLERKNSELDER---LSTLQNENQMLRHILK  148 (168)
Q Consensus       113 ~~LE~~v~~Le~eN~~L~~~---v~~L~~En~~Lr~~L~  148 (168)
                      ..|..+.+.|.++|.+|+.+   +..|+.||..||.+|.
T Consensus        22 ~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~   60 (255)
T 2j5u_A           22 KNTYTENQHLKERLEELAQLESEVADLKKENKDLKESLD   60 (255)
T ss_dssp             ----CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34555666677777666543   4457778999998875

>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}

Probab=81.87  E-value=6  Score=24.59  Aligned_cols=37  Identities=24%  Similarity=0.346  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHh
Q 030957          114 ELETRVKDLERKNSELDERLSTLQNEN----QMLRHILKNT  150 (168)
Q Consensus       114 ~LE~~v~~Le~eN~~L~~~v~~L~~En----~~Lr~~L~~~  150 (168)
                      +||.+|..|+.-...|+.++..|..|.    ..|+++|..+
T Consensus         2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~l   42 (46)
T 3swy_A            2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQL   42 (46)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577777777777777777777777664    4456655544

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=81.84  E-value=8.4  Score=26.11  Aligned_cols=27  Identities=22%  Similarity=0.329  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          109 KAYLNELETRVKDLERKNSELDERLST  135 (168)
Q Consensus       109 k~~~~~LE~~v~~Le~eN~~L~~~v~~  135 (168)
                      .+.|.+|+.++.+++.++.+|+.+++.
T Consensus        39 d~~I~eLEk~L~ekd~eI~~LqseLDK   65 (72)
T 3nmd_A           39 DALIDELELELDQKDELIQMLQNELDK   65 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444443

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=81.72  E-value=1.8  Score=25.34  Aligned_cols=31  Identities=26%  Similarity=0.346  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          118 RVKDLERKNSELDERLSTLQNENQMLRHILK  148 (168)
Q Consensus       118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~  148 (168)
                      +..+|+.+..+|-.+-..|++|...|+.+|.
T Consensus         2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~lL~   32 (34)
T 2bni_A            2 RMKQIEDKLEEILSKGHHICNELARIKKLLG   32 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             chhHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence            3456777777777777777777777776654

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=81.71  E-value=1.6  Score=38.14  Aligned_cols=41  Identities=24%  Similarity=0.295  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957          111 YLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus       111 ~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      .+.+|+.+++.|+.++.+|.+++...+.+...|-..|.++.
T Consensus        18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk   58 (403)
T 4etp_A           18 KIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR   58 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            33445555555555555555555544444555555555554

>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A

Probab=81.61  E-value=2.7  Score=24.61  Aligned_cols=31  Identities=26%  Similarity=0.223  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          118 RVKDLERKNSELDERLSTLQNENQMLRHILK  148 (168)
Q Consensus       118 ~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~  148 (168)
                      ++.+|+....+|-..-..|++|...|+..|.
T Consensus         2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ll~   32 (34)
T 2hy6_A            2 KVKQLADAVEELASANYHLANAVARLAKAVG   32 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence            4567777777777777778888777777764

>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}

Probab=81.59  E-value=4  Score=32.35  Aligned_cols=40  Identities=10%  Similarity=0.113  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK  148 (168)
Q Consensus       109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~  148 (168)
                      .++++.|-..+..|..+|..|+++.+.|..|-.....+|.
T Consensus       144 ~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE  183 (184)
T 3w03_C          144 RELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFE  183 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4577888888888888888888888888888777666664

>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A

Probab=81.09  E-value=1.5  Score=28.04  Aligned_cols=25  Identities=28%  Similarity=0.501  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          109 KAYLNELETRVKDLERKNSELDERL  133 (168)
Q Consensus       109 k~~~~~LE~~v~~Le~eN~~L~~~v  133 (168)
                      ..|++.|+.++..|+..+..|...|
T Consensus        43 ~~~~~~L~~ri~~Le~~l~~l~~~l   67 (70)
T 1zme_C           43 TKYLQQLQKDLNDKTEENNRLKALL   67 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578888888888888777776654

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=81.01  E-value=3.5  Score=26.21  Aligned_cols=26  Identities=15%  Similarity=0.238  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          113 NELETRVKDLERKNSELDERLSTLQN  138 (168)
Q Consensus       113 ~~LE~~v~~Le~eN~~L~~~v~~L~~  138 (168)
                      +.|..++.+|..++..|..+++.|..
T Consensus        22 eaLk~E~~eLk~k~~~L~~~~~el~~   47 (53)
T 2yy0_A           22 ELLRLELAEMKEKYEAIVEENKKLKA   47 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444443

>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1

Probab=80.81  E-value=7.3  Score=27.12  Aligned_cols=32  Identities=19%  Similarity=0.223  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957          120 KDLERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus       120 ~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      .+--.+|..|..+|..|..|+..|++.+..+.
T Consensus        42 ~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~   73 (83)
T 1uii_A           42 YEALKENEKLHKEIEQKDNEIARLKKENKELA   73 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445777777777777777777777776654

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=80.59  E-value=6.4  Score=27.56  Aligned_cols=29  Identities=21%  Similarity=0.255  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030957          122 LERKNSELDERLSTLQNENQMLRHILKNT  150 (168)
Q Consensus       122 Le~eN~~L~~~v~~L~~En~~Lr~~L~~~  150 (168)
                      ++.+...|+.+|..+..++..|.-.+.++
T Consensus        54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl   82 (93)
T 3s4r_A           54 YEEEMRELRRQVDQLTNDKARVEVERDNL   82 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555566666666666666655555544

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=80.34  E-value=5.2  Score=28.85  Aligned_cols=29  Identities=34%  Similarity=0.486  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          110 AYLNELETRVKDLERKNSELDERLSTLQNENQMLRH  145 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~  145 (168)
                      ..|.+|+.+|..|..+|..       |..||.+-++
T Consensus        65 ~~v~eLe~everL~~ENq~-------L~~e~~~~~~   93 (104)
T 3s9g_A           65 ARVRELELELDRLRAENLQ-------LLTENELHRQ   93 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHH-------HHHHHHhhcc
Confidence            3444555555554444444       4445555443

>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*

Probab=80.01  E-value=1.1  Score=32.86  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 030957          127 SELDERLSTLQNENQMLRHILK  148 (168)
Q Consensus       127 ~~L~~~v~~L~~En~~Lr~~L~  148 (168)
                      .+|.++|..|+-||..||++|.
T Consensus        11 EeLaaeL~kLqmENK~LKkkl~   32 (110)
T 2oa5_A           11 EEMVKEVERLKLENKTLKQKVK   32 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            4667777778888888888874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	168
d1sknp_	74	Skn-1 {Caenorhabditis elegans [TaxId: 6239]}	96.64
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	92.86
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	89.32
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	88.92
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	88.01
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	86.87
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	85.83
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	85.08
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	84.65

>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.64  E-value=0.00039  Score=46.26  Aligned_cols=27  Identities=22%  Similarity=0.465  Sum_probs=23.1

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 030957           88 NKRLKRLLRNRVSAQQARERKKAYLNE  114 (168)
Q Consensus        88 ~kr~rR~~rNR~AA~~sR~RKk~~~~~  114 (168)
                      .+-++|+=+||+||+.||+||-...+.
T Consensus        47 irDIRRRGKNKvAAqnCRKRKld~~d~   73 (74)
T d1sknp_          47 IRKIRRRGKNKVAARTCRQRRTDRHDK   73 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHhcccHHHHHHHHHhhhhhhcc
Confidence            567788999999999999999887654

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.86  E-value=0.092  Score=34.65  Aligned_cols=36  Identities=19%  Similarity=0.315  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957          109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus       109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      ..||..|+.++..       |..++..|..++..|+..|..+.
T Consensus        51 ~~yI~~L~~~~~~-------l~~~~~~l~~~~~~L~~~l~~L~   86 (88)
T d1nkpa_          51 TAYILSVQAEEQK-------LISEEDLLRKRREQLKHKLEQLG   86 (88)
T ss_dssp             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhc
Confidence            3455555555544       44455555555656666665543

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.32  E-value=0.86  Score=29.59  Aligned_cols=24  Identities=17%  Similarity=0.213  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Q 030957          127 SELDERLSTLQNENQMLRHILKNT  150 (168)
Q Consensus       127 ~~L~~~v~~L~~En~~Lr~~L~~~  150 (168)
                      ..|+.++..|..++..|+..+..+
T Consensus        55 ~~L~~~~~~l~~~~~~l~~~~~~L   78 (88)
T d1nkpa_          55 LSVQAEEQKLISEEDLLRKRREQL   78 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555555555444

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.92  E-value=0.22  Score=32.30  Aligned_cols=30  Identities=20%  Similarity=0.420  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030957          122 LERKNSELDERLSTLQNENQMLRHILKNTT  151 (168)
Q Consensus       122 Le~eN~~L~~~v~~L~~En~~Lr~~L~~~~  151 (168)
                      |..++..|..++..|..++..|.++|..+.
T Consensus        52 L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~   81 (83)
T d1nkpb_          52 MRRKNHTHQQDIDDLKRQNALLEQQVRALG   81 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            344444555555566666777777766543

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.01  E-value=0.34  Score=29.83  Aligned_cols=25  Identities=20%  Similarity=0.227  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          110 AYLNELETRVKDLERKNSELDERLS  134 (168)
Q Consensus       110 ~~~~~LE~~v~~Le~eN~~L~~~v~  134 (168)
                      +||..|+.++..|+.++..|+....
T Consensus        33 ~YI~~Lq~~~~~L~~e~~~L~~~~~   57 (61)
T d1uklc_          33 DYIKYLQQVNHKLRQENMVLKLANQ   57 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888999988888888888776553

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.87  E-value=0.69  Score=29.47  Aligned_cols=33  Identities=24%  Similarity=0.316  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLRHILK  148 (168)
Q Consensus       109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr~~L~  148 (168)
                      -.||..|+.++..|..+.       ..|..++..|+.+|.
T Consensus        46 ~~yI~~L~~~~~~l~~~~-------~~L~~~~~~L~~~l~   78 (79)
T d1nlwa_          46 KLHIKKLEDSDRKAVHQI-------DQLQREQRHLKRQLE   78 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence            566766666666555544       445556666666654

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.83  E-value=1.6  Score=27.87  Aligned_cols=36  Identities=11%  Similarity=0.260  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030957          109 KAYLNELETRVKDLERKNSELDERLSTLQNENQMLR  144 (168)
Q Consensus       109 k~~~~~LE~~v~~Le~eN~~L~~~v~~L~~En~~Lr  144 (168)
                      -.||..|+.++..|..++..|+.+...|..++..|+
T Consensus        46 ~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~   81 (83)
T d1nkpb_          46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG   81 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            467888888888888888888888888888776653

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.08  E-value=0.76  Score=29.48  Aligned_cols=22  Identities=27%  Similarity=0.303  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 030957          128 ELDERLSTLQNENQMLRHILKN  149 (168)
Q Consensus       128 ~L~~~v~~L~~En~~Lr~~L~~  149 (168)
                      .|+.++..|..|+..|+..+..
T Consensus        54 ~L~~~~~~L~~e~~~lk~~~~~   75 (80)
T d1am9a_          54 FLQHSNQKLKQENLSLRTAVHK   75 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555555544

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.65  E-value=1.5  Score=27.80  Aligned_cols=21  Identities=19%  Similarity=0.430  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 030957          113 NELETRVKDLERKNSELDERL  133 (168)
Q Consensus       113 ~~LE~~v~~Le~eN~~L~~~v  133 (168)
                      ..|..++..|..++..|+.++
T Consensus        57 ~~l~~~~~~L~~~~~~L~~~l   77 (79)
T d1nlwa_          57 RKAVHQIDQLQREQRHLKRQL   77 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            344444444555555544443