Citrus Sinensis ID: 030966

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MAYAPVRYKTLGILYYTNPLPKATSEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEESPVDGLTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGSNDD
Secondary Structure (PSIPRED)
ccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHEEEHHHHHHHcccccHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHEccEEEEcccccccccccccccccEEEEccccccEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mayapvryKTLGILYytnplpkatseetssgtdqyvvdkrdgataaedvpaveknvynesvatavpkeespvdgltnELLDNLkikfdsedkysLVLYGTGALLALWLTTVVVGaidsiplfpKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGSNDD
Flexible Loop (DISEMBL)
mayapvryKTLGILYYTNPlpkatseetssgtdqyVVDKRDGAtaaedvpaveknvynesvatavpkeespvdglTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEelkqqvlgsndd
Low Complexity Region (SEG)
MAYAPVRYKTLGILYYTNPLPKATSEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEESPVDGLTNELLDNLKIKFDSEDKYSLVLYgtgallalwlttvvvgaIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGSNDD
Disordered region (IsUnstruct)
***APVRYKTLGILYYTN********************************************************LTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDEL*****************
Disordered Region (DISOPRED)
****P*RYKTLGILYYTNPLP*****************************************************LTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQ*VLG****
Disordered Region (DISEMBL)
MAYAPVRYKTLGILYYTNPLPK**********DQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEESPVDGLTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQ********
Disordered Region (DISPRO)
***APVRYKTLGILYYTNPLPK**********DQY****RDGATAAE**********************SPVDGLTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLG****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAYAPVRYKTLGILYYTNPLPKATSEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEESPVDGLTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
O04616	164	Uncharacterized protein A	no	no	0.595	0.609	0.553	6e-26
Q8LCA1	174	Thylakoid membrane phosph	no	no	0.458	0.442	0.376	2e-11
Q119Z5	881	Glutamate--tRNA ligase OS	yes	no	0.690	0.131	0.311	8e-10

>sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1 SV=1

 Score =  116 bits (291), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 57/103 (55%), Positives = 82/103 (79%), Gaps = 3/103 (2%)

Query: 64  AVPKEESPVDGLTNELLDNLKIKFDS-EDKYSLVLYGTGALLALWLTTVVVGAIDSIPLF 122
           A  +E S +D  TNEL+ +LK K+D  E+K ++++YG GA++A+WL+++VVGAI+S+PL 
Sbjct: 63  ASSEETSSID--TNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLL 120

Query: 123 PKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGS 165
           PK+ME+VGLGYT WF +RYLLFK +R ELA  IE LK+++ GS
Sbjct: 121 PKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGS 163

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LCA1|TMP14_ARATH Thylakoid membrane phosphoprotein 14 kDa, chloroplastic OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2

 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 53/77 (68%)

Query: 90  EDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRD 149
           +DKY++       ++ALW +  ++ AID +PL P ++E+VG+GYT WF+++ L+FK +R+
Sbjct: 98  DDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDRE 157

Query: 150 ELATKIEELKQQVLGSN 166
            L  K++   + +LGS+
Sbjct: 158 ALFEKVKSTYKDILGSS 174

Arabidopsis thaliana (taxid: 3702)

>sp|Q119Z5|SYE_TRIEI Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101) GN=gltX PE=3 SV=1

 Score = 63.2 bits (152), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 22/138 (15%)

Query: 48  DVPAVEKNVYNESVATAVPKEESPVDGLTNELLD----------NLKIKFDSEDKYSLV- 96
           D    E+ V  + V T++  ++ PVD +TN+ ++           + I F+  D  + + 
Sbjct: 742 DAETREQKVATQ-VETSILDDQKPVDTVTNQTVEVEQPNKIKEQFINIFFNFPDYINQLY 800

Query: 97  --------LYGTGALLALWLT--TVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKK 146
                   L+G  AL+ L  T   VV+ A+D IP+   + E++G+ Y +WF +RYLL + 
Sbjct: 801 QQYQGQLKLFGWLALVILTFTFMAVVIEALDGIPILSIIFELIGVIYLVWFVYRYLLKRS 860

Query: 147 NRDELATKIEELKQQVLG 164
           NR EL  KIE +K+++ G
Sbjct: 861 NRQELLDKIENIKREIFG 878

Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
225469778	204	PREDICTED: uncharacterized protein LOC10	0.982	0.808	0.630	3e-54
359495653	204	PREDICTED: uncharacterized protein LOC10	0.982	0.808	0.630	7e-54
388506910	199	unknown [Lotus japonicus]	0.916	0.773	0.558	2e-39
351723571	197	uncharacterized protein LOC100499731 [Gl	0.886	0.756	0.558	2e-38
351727288	200	uncharacterized protein LOC100305966 [Gl	0.976	0.82	0.514	1e-36
357485585	182	Glutamyl-tRNA synthetase [Medicago trunc	0.922	0.851	0.518	1e-35
4467116	153	hypothetical protein [Arabidopsis thalia	0.869	0.954	0.496	2e-32
297798056	194	threonine endopeptidase [Arabidopsis lyr	0.851	0.737	0.493	3e-32
449508380	210	PREDICTED: uncharacterized protein At4g0	0.958	0.766	0.383	3e-32
18420175	193	uncharacterized protein [Arabidopsis tha	0.851	0.740	0.493	6e-32

>gi|225469778|ref|XP_002274430.1| PREDICTED: uncharacterized protein LOC100261101 [Vitis vinifera] gi|297735928|emb|CBI18704.3| unnamed protein product [Vitis vinifera]

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 106/168 (63%), Positives = 129/168 (76%), Gaps = 3/168 (1%)

Query: 4   APVRYKTLGILYYTNPLPKAT-SEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVA 62
           +P+   + G LY+ NPL +A+ SE +SSG DQY+ ++RD     ED+PA E+NVYNE + 
Sbjct: 37  SPISRTSPGSLYFNNPLLRASISEGSSSGADQYIGEERDSVLVMEDIPATEENVYNEVIP 96

Query: 63  TAVPKEESPVDGLT--NELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIP 120
           T  P E+S V+  T   E LDNL IKFDSED YS+ LYGTGAL ALW  + +VGAIDSIP
Sbjct: 97  TEAPIEDSQVEEQTVAFEFLDNLNIKFDSEDPYSIFLYGTGALTALWFASAIVGAIDSIP 156

Query: 121 LFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGSNDD 168
           +FPKLME+VGLGYTLWFS RYL+FK+NRDELA KIEELKQQVLGS D+
Sbjct: 157 IFPKLMEIVGLGYTLWFSARYLIFKQNRDELAAKIEELKQQVLGSEDE 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495653|ref|XP_003635047.1| PREDICTED: uncharacterized protein LOC100853187 isoform 1 [Vitis vinifera] gi|359495655|ref|XP_003635048.1| PREDICTED: uncharacterized protein LOC100853187 isoform 2 [Vitis vinifera] gi|297735931|emb|CBI18707.3| unnamed protein product [Vitis vinifera]

 Score =  215 bits (547), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 106/168 (63%), Positives = 128/168 (76%), Gaps = 3/168 (1%)

Query: 4   APVRYKTLGILYYTNPLPKAT-SEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVA 62
           +P+   + G LY+ NPL +A+ SE +SSG DQY  ++RD     ED+PA E+NVYNE + 
Sbjct: 37  SPISRTSPGSLYFNNPLLRASISEGSSSGADQYFGEERDSVLVMEDIPATEENVYNEVIP 96

Query: 63  TAVPKEESPVDGLT--NELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIP 120
           T  P E+S V+  T   E LDNL IKFDSED YS+ LYGTGAL ALW  + +VGAIDSIP
Sbjct: 97  TEAPIEDSQVEEQTVAFEFLDNLNIKFDSEDPYSIFLYGTGALTALWFASAIVGAIDSIP 156

Query: 121 LFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGSNDD 168
           +FPKLME+VGLGYTLWFS RYL+FK+NRDELA KIEELKQQVLGS D+
Sbjct: 157 IFPKLMEIVGLGYTLWFSARYLIFKQNRDELAAKIEELKQQVLGSEDE 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506910|gb|AFK41521.1| unknown [Lotus japonicus]

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 86/154 (55%), Positives = 113/154 (73%)

Query: 14  LYYTNPLPKATSEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEESPVD 73
           ++  N L +ATS + +SG+  +  +KRDG    +DV    +N ++E+V +  PKEE PVD
Sbjct: 45  IFVRNLLTRATSSDETSGSSSFYGEKRDGVVILDDVKGAGENGFSETVVSQDPKEEVPVD 104

Query: 74  GLTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGY 133
                LLD+L +K D  D  S+VLYG+GA++ALWL + V+GAIDSIPLFPKL+EVVGL Y
Sbjct: 105 EQAFALLDDLNMKLDLNDTGSIVLYGSGAVVALWLLSAVIGAIDSIPLFPKLLEVVGLSY 164

Query: 134 TLWFSWRYLLFKKNRDELATKIEELKQQVLGSND 167
           T+WF+ RYLLFKKNRDEL  KIEELK+QV+GS D
Sbjct: 165 TVWFTTRYLLFKKNRDELGAKIEELKEQVIGSED 198

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723571|ref|NP_001235236.1| uncharacterized protein LOC100499731 [Glycine max] gi|255626121|gb|ACU13405.1| unknown [Glycine max]

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 86/154 (55%), Positives = 112/154 (72%), Gaps = 5/154 (3%)

Query: 18  NPLPKA-TSEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEESPVDG-- 74
           N LPKA +SEE S+G  Q+  +KRDG    E+V    KN ++++V     +EE   DG  
Sbjct: 46  NLLPKAMSSEERSTGGSQFFNEKRDGVIILENVKEDNKNEFDKTVIEDTKEEELSDDGQG 105

Query: 75  LTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYT 134
           L+ +L+D  K+ FD++D  S+VLYG GAL+ALWLT+ V+GAIDSIPL PKL+EVVGL YT
Sbjct: 106 LSFDLMD--KLNFDTDDTGSIVLYGGGALVALWLTSAVIGAIDSIPLIPKLLEVVGLAYT 163

Query: 135 LWFSWRYLLFKKNRDELATKIEELKQQVLGSNDD 168
           +WF+ RYLLFK+NRDEL  KIEELK Q+ GS D+
Sbjct: 164 VWFTSRYLLFKQNRDELGAKIEELKGQIFGSEDN 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727288|ref|NP_001235620.1| uncharacterized protein LOC100305966 [Glycine max] gi|255627137|gb|ACU13913.1| unknown [Glycine max]

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/175 (51%), Positives = 113/175 (64%), Gaps = 11/175 (6%)

Query: 1   MAYAPVRYKTLGILYYTNPLPKATS--EETSSGTDQYVVDKRDGATAAEDVPAVEKNVYN 58
            +Y P        +   N  PKATS  EE SSG  Q+  +KRDG    EDV   E N  N
Sbjct: 30  QSYTPSAAHLSRSVCLRNLSPKATSSEEERSSGGSQFFNEKRDGVIILEDVK--EDNNKN 87

Query: 59  ESVATAVPKEESPV-----DGLTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVV 113
           E   T +   +  +      GL+ +LLD  K+ FD++D  S+V+YG GAL+ALWLT+ V+
Sbjct: 88  EFDKTVIEDTKQDLFDDDGQGLSFDLLD--KLNFDTDDTGSIVVYGGGALVALWLTSAVI 145

Query: 114 GAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGSNDD 168
           GAIDSIPLFPKL+EVVGL YT+WF+ RYLLFK+NRDEL  KIEELK Q+ GS D+
Sbjct: 146 GAIDSIPLFPKLLEVVGLAYTVWFTSRYLLFKQNRDELGAKIEELKGQIFGSEDN 200

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485585|ref|XP_003613080.1| Glutamyl-tRNA synthetase [Medicago truncatula] gi|355514415|gb|AES96038.1| Glutamyl-tRNA synthetase [Medicago truncatula] gi|388495348|gb|AFK35740.1| unknown [Medicago truncatula]

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/162 (51%), Positives = 107/162 (66%), Gaps = 7/162 (4%)

Query: 5   PVRYKTLGILYYTNPLPKATSEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATA 64
           P ++  L    +   +    SEE  SG  +   +KRDG    E     +KN YNE+V   
Sbjct: 27  PPKHALLSRSAFLRNVRATASEENPSGAGKLFNEKRDGVITLE----ADKNGYNETVENE 82

Query: 65  VPKEESP-VDGLTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFP 123
            PKE  P  +GL  ELLD  K+ FD  D  SL +YG GA++ALWLT+ +VGA+DSIP+ P
Sbjct: 83  DPKEVLPDGEGLPLELLD--KLNFDINDTTSLAVYGGGAIVALWLTSAIVGAVDSIPVIP 140

Query: 124 KLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGS 165
           KL EVVGLGY+LWF++RYLLFK+NR+ELA KIEELK+QVLG 
Sbjct: 141 KLFEVVGLGYSLWFTYRYLLFKRNREELANKIEELKEQVLGQ 182

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4467116|emb|CAB37550.1| hypothetical protein [Arabidopsis thaliana] gi|7270793|emb|CAB80475.1| hypothetical protein [Arabidopsis thaliana]

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/159 (49%), Positives = 111/159 (69%), Gaps = 13/159 (8%)

Query: 11  LGILYYTNPLPKAT-SEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEE 69
           LG L  +   P  T +EETS+G +++ V+ RDG   A    A EKN  +E    A   E+
Sbjct: 7   LGTLRCSRKFPGETVTEETSTGVNEFGVEDRDGVVVA----AEEKNSNSE----APQAED 58

Query: 70  SPVDGLTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVV 129
                L  E L++  IK DS+  YS++LYG+GA++AL+LT+ +V ++++IPLFPKLMEVV
Sbjct: 59  EETQAL--EFLND--IKLDSDKTYSILLYGSGAIVALYLTSAIVSSLEAIPLFPKLMEVV 114

Query: 130 GLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGSNDD 168
           GLGYTLWF+ RYLLFK+NR+EL TK+ E+K+QVLGS+ +
Sbjct: 115 GLGYTLWFTTRYLLFKRNREELKTKVSEIKKQVLGSDSE 153

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798056|ref|XP_002866912.1| threonine endopeptidase [Arabidopsis lyrata subsp. lyrata] gi|297312748|gb|EFH43171.1| threonine endopeptidase [Arabidopsis lyrata subsp. lyrata]

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 77/156 (49%), Positives = 109/156 (69%), Gaps = 13/156 (8%)

Query: 14  LYYTNPLPKAT-SEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEESPV 72
           L  +   P  T SEETS+G +++ ++ RDG      V AVE+   N   + A   E+   
Sbjct: 51  LRCSRKFPGETVSEETSTGVNEFGLEDRDGV-----VVAVEEKTSNSEASQA---EDDQT 102

Query: 73  DGLTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLG 132
             L  E L++  IK DS+  YS++LYG+GA++AL+LT+ +V ++++IPLFPKLMEVVGLG
Sbjct: 103 QAL--EFLND--IKLDSDKTYSILLYGSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLG 158

Query: 133 YTLWFSWRYLLFKKNRDELATKIEELKQQVLGSNDD 168
           YTLWFS RYLLFK+NR+EL TK+ E+K+QVLGS+ +
Sbjct: 159 YTLWFSTRYLLFKRNREELKTKVSEIKKQVLGSDSE 194

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449508380|ref|XP_004163298.1| PREDICTED: uncharacterized protein At4g01150, chloroplastic-like [Cucumis sativus]

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 77/201 (38%), Positives = 111/201 (55%), Gaps = 40/201 (19%)

Query: 6   VRYKTLGILYYTNPLPKATSEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNES----- 60
           + Y  LG  ++   LP+A + + S+G+  +  ++RD  T  ED P+       +S     
Sbjct: 10  LNYYFLGHRHFAVSLPRAAASDESNGSSSFFTEQRDSVTVLEDSPSASSLTLEDSPPEEI 69

Query: 61  -----VATAVPKEE-----------------------------SPVDGLTNELLDNLK-I 85
                 AT VPK+E                              P++G   +  + L  +
Sbjct: 70  PSVVLAATEVPKQEPVEDVPVITLDDSSSAGKVEMVTSEEPKEQPLEGAQEQAFEFLNDL 129

Query: 86  KFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFK 145
           K +S D YSL LYG GA   +WL + +VGA+DSIPL PKL+EVVGLGY++WF+ RYLLFK
Sbjct: 130 KLESVDTYSLALYGAGAFFGIWLVSAIVGAVDSIPLVPKLLEVVGLGYSVWFTARYLLFK 189

Query: 146 KNRDELATKIEELKQQVLGSN 166
           ++RDELA +I+ELK+QVLGS+
Sbjct: 190 ESRDELAARIDELKEQVLGSD 210

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18420175|ref|NP_568035.1| uncharacterized protein [Arabidopsis thaliana] gi|21554198|gb|AAM63277.1| unknown [Arabidopsis thaliana] gi|107738205|gb|ABF83661.1| At4g38100 [Arabidopsis thaliana] gi|332661478|gb|AEE86878.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 77/156 (49%), Positives = 109/156 (69%), Gaps = 13/156 (8%)

Query: 14  LYYTNPLPKAT-SEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEESPV 72
           L  +   P  T +EETS+G +++ V+ RDG   A    A EKN  +E    A   E+   
Sbjct: 50  LRCSRKFPGETVTEETSTGVNEFGVEDRDGVVVA----AEEKNSNSE----APQAEDEET 101

Query: 73  DGLTNELLDNLKIKFDSEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLG 132
             L  E L++  IK DS+  YS++LYG+GA++AL+LT+ +V ++++IPLFPKLMEVVGLG
Sbjct: 102 QAL--EFLND--IKLDSDKTYSILLYGSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLG 157

Query: 133 YTLWFSWRYLLFKKNRDELATKIEELKQQVLGSNDD 168
           YTLWF+ RYLLFK+NR+EL TK+ E+K+QVLGS+ +
Sbjct: 158 YTLWFTTRYLLFKRNREELKTKVSEIKKQVLGSDSE 193

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
TAIR|locus:2121065	193	AT4G38100 [Arabidopsis thalian	0.803	0.699	0.442	4e-26
TAIR|locus:2125018	164	AT4G01150 "AT4G01150" [Arabido	0.625	0.640	0.449	5.8e-18
TAIR|locus:2044335	174	PSI-P "photosystem I P subunit	0.684	0.660	0.260	1.8e-09
TAIR|locus:2037435	156	AT1G52220 "AT1G52220" [Arabido	0.625	0.673	0.261	2.9e-07

TAIR|locus:2121065 AT4G38100 [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 65/147 (44%), Positives = 92/147 (62%)

Query:    22 KATSEETSSGTDQYVVDKRDGATAAEDVPAVEKNVYNESVATAVPKEESPVDGLTNELLD 81
             +  +EETS+G +++ V+ RDG   A    A EKN  +E    A   E+     L  E L+
Sbjct:    59 ETVTEETSTGVNEFGVEDRDGVVVA----AEEKNSNSE----APQAEDEETQAL--EFLN 108

Query:    82 NLKIKFDSEDKYSLVLYXXXXXXXXXXXXXXXXXIDSIPLFPKLMEVVGLGYTLWFSWRY 141
             ++K+  DS+  YS++LY                 +++IPLFPKLMEVVGLGYTLWF+ RY
Sbjct:   109 DIKL--DSDKTYSILLYGSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTLWFTTRY 166

Query:   142 LLFKKNRDELATKIEELKQQVLGSNDD 168
             LLFK+NR+EL TK+ E+K+QVLGS+ +
Sbjct:   167 LLFKRNREELKTKVSEIKKQVLGSDSE 193

GO:0009507 "chloroplast" evidence=ISM

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

TAIR|locus:2125018 AT4G01150 "AT4G01150" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 49/109 (44%), Positives = 68/109 (62%)

Query:    59 ESVATAVPKEE-SPVDGLTNELLDNLKIKFDS-EDKYSLVLYXXXXXXXXXXXXXXXXXI 116
             E + T    EE S +D  TNEL+ +LK K+D  E+K ++++Y                 I
Sbjct:    57 ELLKTRASSEETSSID--TNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAI 114

Query:   117 DSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGS 165
             +S+PL PK+ME+VGLGYT WF +RYLLFK +R ELA  IE LK+++ GS
Sbjct:   115 NSVPLLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGS 163

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2044335 PSI-P "photosystem I P subunit" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 31/119 (26%), Positives = 59/119 (49%)

Query:    52 VEKNVYNESVATAVPKEESPVDGLTNELLDNLKIKFDS----EDKYSLVLYXXXXXXXXX 107
             + +NV   +         +  +  T EL + +K   ++    +DKY++            
Sbjct:    56 IVRNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALW 115

Query:   108 XXXXXXXXIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGSN 166
                     ID +PL P ++E+VG+GYT WF+++ L+FK +R+ L  K++   + +LGS+
Sbjct:   116 GSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGSS 174

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0003677 "DNA binding" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=ISS;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=IDA

GO:0030093 "chloroplast photosystem I" evidence=IMP;IDA

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2037435 AT1G52220 "AT1G52220" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 28/107 (26%), Positives = 53/107 (49%)

Query:    60 SVATAVPKEESPVDGLTN-ELLDNLKIKFD-SEDKYSLVLYXXXXXXXXXXXXXXXXXID 117
             S++  V       D  T+ +++  ++  +D SED+  L+                   ID
Sbjct:    49 SISLMVKASGESSDSSTDLDVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAID 108

Query:   118 SIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLG 164
              +P+     E+VG+ ++ WF++RYLLFK +R EL+  +++    +LG
Sbjct:   109 KLPVISSGFELVGILFSTWFTYRYLLFKPDRQELSKIVKKSVADILG 155


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.133   0.376    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      168       151   0.00097  104 3  11 23  0.41    32
                                                     30  0.40    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  557 (59 KB)
  Total size of DFA:  132 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.37u 0.21s 15.58t   Elapsed:  00:00:01
  Total cpu time:  15.37u 0.21s 15.58t   Elapsed:  00:00:01
  Start:  Fri May 10 06:03:40 2013   End:  Fri May 10 06:03:41 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00011469001	SubName- Full=Chromosome undetermined scaffold_310, whole genome shotgun sequence; (204 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00027603001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (254 aa)			•						0.505
	GSVIVG00002625001	SubName- Full=Chromosome undetermined scaffold_133, whole genome shotgun sequence; (149 aa)			•						0.505
	GSVIVG00007397001	SubName- Full=Chromosome chr16 scaffold_189, whole genome shotgun sequence; (251 aa)			•						0.504
	GSVIVG00004124001	SubName- Full=Chromosome undetermined scaffold_608, whole genome shotgun sequence; (162 aa)			•						0.502
	GSVIVG00035652001	SubName- Full=Chromosome undetermined scaffold_79, whole genome shotgun sequence; (199 aa)			•						0.501
	GSVIVG00020301001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (293 aa)			•						0.501
	cemA	RecName- Full=Chloroplast envelope membrane protein;; May be involved in proton extrusion. Indi [...] (226 aa)			•						0.500
	GSVIVG00017320001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (94 aa)			•						0.500
	GSVIVG00009465001	SubName- Full=Chromosome undetermined scaffold_235, whole genome shotgun sequence; (234 aa)			•						0.500
	GSVIVG00034898001	SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (285 aa)			•						0.499

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	168
pfam14159	90	pfam14159, DUF4308, Domain of unknown function (DU	5e-33
PLN02777	167	PLN02777, PLN02777, photosystem I P subunit (PSI-P	3e-17

>gnl|CDD|222574 pfam14159, DUF4308, Domain of unknown function (DUF4308)

 Score =  112 bits (282), Expect = 5e-33
 Identities = 45/81 (55%), Positives = 59/81 (72%), Gaps = 4/81 (4%)

Query: 88  DSEDKYSLVLYGTGA----LLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLL 143
             EDKY   L G GA    ++ALWL+  V+ AIDSIPL P L+E+VGLGY+ WF +RYLL
Sbjct: 10  KFEDKYKRPLLGVGAIIAVIVALWLSAAVLDAIDSIPLLPGLLELVGLGYSGWFVYRYLL 69

Query: 144 FKKNRDELATKIEELKQQVLG 164
           F ++R EL  KI+ELK+++LG
Sbjct: 70  FSEDRQELLAKIQELKKEILG 90

This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is approximately 90 amino acids in length. The domain is found in several amino-acyl tRNA synthetase enzymes as well as in isolation in single domain proteins. Length = 90

>gnl|CDD|178376 PLN02777, PLN02777, photosystem I P subunit (PSI-P)

 Score = 74.3 bits (182), Expect = 3e-17
 Identities = 36/102 (35%), Positives = 67/102 (65%), Gaps = 4/102 (3%)

Query: 69  ESPVDGLTNELLDNLKIKFDS----EDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPK 124
           E+P +  T EL + +K   ++    EDKY++       ++ALW +  ++ AID +PL P 
Sbjct: 66  EAPAEVETTELPEIVKTVQEAWDKVEDKYAVSSLAFAGVVALWGSAGMISAIDRLPLVPG 125

Query: 125 LMEVVGLGYTLWFSWRYLLFKKNRDELATKIEELKQQVLGSN 166
           ++E+VG+GYT WF+++ L+FK +R+ L  KI++  ++++GS+
Sbjct: 126 VLELVGIGYTGWFAYKNLVFKPDREALIEKIKDTYKEIIGSS 167

Length = 167

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
PLN02777	167	photosystem I P subunit (PSI-P)	100.0
PF14159	90	CAAD: CAAD domains of cyanobacterial aminoacyl-tRN	99.96

>PLN02777 photosystem I P subunit (PSI-P)

Probab=100.00  E-value=2.1e-35  Score=239.76  Aligned_cols=92  Identities=35%  Similarity=0.737  Sum_probs=88.9

Q ss_pred             hhHHHHHHhhhhhc-cccchhhHHHHHHHHHHHHHHHHHHHHhhcCCCccchheehhheeeehhhhhhhcccccHHHHHH
Q 030966           75 LTNELLDNLKIKFD-SEDKYSLVLYGTGALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELAT  153 (168)
Q Consensus        75 ~~~e~l~~l~~kwd-~edK~~v~~~g~gaiVal~v~~aVl~AId~IPLlp~llELVGlgYs~WFvyRyLL~~~~R~eL~~  153 (168)
                      +..|+++.++++|| .|||++++++++++||++|++.+||+|||+|||+|++||||||||++||+||||+|+++|+||++
T Consensus        75 ~~~ei~k~~~e~Wd~~EdK~av~~l~~aaiVal~v~~~VL~AId~lPLlP~lLELVGigYs~WF~yRyLLfke~ReeL~~  154 (167)
T PLN02777         75 ELPEIVKTVQEAWDKVEDKYAVSSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDREALIE  154 (167)
T ss_pred             cHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHhcCcccHHHHHH
Confidence            35699999999999 69999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhcCCC
Q 030966          154 KIEELKQQVLGSN  166 (168)
Q Consensus       154 ki~~lk~~I~G~~  166 (168)
                      +|+++|++|+|++
T Consensus       155 ki~~lk~~IlG~s  167 (167)
T PLN02777        155 KIKDTYKEIIGSS  167 (167)
T ss_pred             HHHHHHHHhhCCC
Confidence            9999999999963

>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase

Probab=99.96  E-value=1.3e-30  Score=192.59  Aligned_cols=84  Identities=49%  Similarity=0.878  Sum_probs=73.3

Q ss_pred             HHhhhhhc-cccchhhHHHHH----HHHHHHHHHHHHHHHhhcCCCccchheehhheeeehhhhhhhcccccHHHHHHHH
Q 030966           81 DNLKIKFD-SEDKYSLVLYGT----GALLALWLTTVVVGAIDSIPLFPKLMEVVGLGYTLWFSWRYLLFKKNRDELATKI  155 (168)
Q Consensus        81 ~~l~~kwd-~edK~~v~~~g~----gaiVal~v~~aVl~AId~IPLlp~llELVGlgYs~WFvyRyLL~~~~R~eL~~ki  155 (168)
                      ++++++|+ ..++|...++++    ++++++|++++|++|||+|||+|++|||||+||++||+||||+++++||||.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPll~~llElvGlgyt~wF~~ryLL~~~~R~el~~~i   81 (90)
T PF14159_consen    2 SKLPEYWGEFFDKYKRPLLTIGAIIAVIVALWVSAAVLDAINSIPLLPGLLELVGLGYTGWFVYRYLLFAENRQELLQKI   81 (90)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHhHHHHHHHcChHhHHHHHHHH
Confidence            45555665 345555555554    5599999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhcC
Q 030966          156 EELKQQVLG  164 (168)
Q Consensus       156 ~~lk~~I~G  164 (168)
                      +++|++|+|
T Consensus        82 ~~~k~~i~G   90 (90)
T PF14159_consen   82 QSLKKEILG   90 (90)
T ss_pred             HHHHHHhcC
Confidence            999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00