Citrus Sinensis ID: 030977

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MATAAYPPPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTLEGQ
Secondary Structure (PSIPRED)
ccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHccHHHccccccccccccccccEEEEccccccccccccHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mataaypppppyyrlykdylqnpnsapeppppiegtyicfggnyttddvlpsleeqgvrqlypkgpnidfKKELRSLNRELQLHILELSDVlverpsqyarRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTLEGQ
Flexible Loop (DISEMBL)
mataaypppppYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRrlkeslgtlegq
Low Complexity Region (SEG)
MATAAypppppyyRLYKDYLQNPNSApeppppIEGTYICFGGNYTTDDVLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTLEGQ
Disordered region (IsUnstruct)
*********************************EGTYICFGGNYTTDDVLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQ******************************
Disordered Region (DISOPRED)
*ATAAYPPPPPYYRLYK****************EGTYICFGGNYTTDDVLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPS**ARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLK***G*****
Disordered Region (DISEMBL)
MATAAYPPPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDI*********************
Disordered Region (DISPRO)
**TAAYPPPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTLE**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATAAYPPPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLEGQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
Q9LZD7	168	Mediator of RNA polymeras	yes	no	1.0	1.0	0.827	1e-71
Q9LYW3	168	Mediator of RNA polymeras	yes	no	1.0	1.0	0.845	8e-69
Q17MI0	219	Mediator of RNA polymeras	N/A	no	0.970	0.744	0.396	6e-29
Q55DQ5	345	Putative mediator of RNA	yes	no	0.785	0.382	0.458	1e-28
Q7PR68	219	Mediator of RNA polymeras	yes	no	0.928	0.712	0.397	5e-26
Q9CZB6	233	Mediator of RNA polymeras	yes	no	0.958	0.690	0.377	3e-25
Q2F7Z4	233	Mediator of RNA polymeras	yes	no	0.958	0.690	0.377	3e-25
Q3T123	233	Mediator of RNA polymeras	yes	no	0.958	0.690	0.377	4e-25
O43513	233	Mediator of RNA polymeras	yes	no	0.958	0.690	0.377	4e-25
Q7ZV35	241	Mediator of RNA polymeras	yes	no	0.958	0.668	0.365	1e-24

>sp|Q9LZD7|MED7B_ARATH Mediator of RNA polymerase II transcription subunit 7b OS=Arabidopsis thaliana GN=MED7B PE=1 SV=1

 Score =  268 bits (685), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 139/168 (82%), Positives = 156/168 (92%)

Query: 1   MATAAYPPPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQ 60
           MATA YPPPPPYYRLYKD+ +N +SAPEPPPPIEGTY+CFGGNYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDFSENTDSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSL 120
           LYPK  N+D+KKELRSLNRELQLHILEL+DVLV+RPSQYA+R+ +IS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTLEGQ 168
           RPHQARATLIHI+ELQIQ+RKQAVEDIKRRREEAQ  LK++  TL+GQ
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDGQ 168

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYW3|MED7A_ARATH Mediator of RNA polymerase II transcription subunit 7a OS=Arabidopsis thaliana GN=MED7A PE=1 SV=1

 Score =  259 bits (661), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 142/168 (84%), Positives = 157/168 (93%)

Query: 1   MATAAYPPPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQ 60
           MATA YPPPPPYYRLYKDY +NPNSAPEPPPPIEGTY+CFGGNYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDYSENPNSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSL 120
           LYPK  N+D+K ELRSLNRELQLHILEL+DVLV+RPSQYA+R+ +IS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKNELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTLEGQ 168
           RPHQARATLIHI+ELQIQ+RKQAVEDIKRRREEAQR LK++  TL+GQ
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQRLLKDAYLTLDGQ 168

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q17MI0|MED7_AEDAE Mediator of RNA polymerase II transcription subunit 7 OS=Aedes aegypti GN=MED7 PE=3 SV=1

 Score =  126 bits (317), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 109/169 (64%), Gaps = 6/169 (3%)

Query: 1   MATAAYP-PPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTT-DDVLPSLEEQGV 58
           +  +++P PP  YY+LY D     N AP+PP PI+GTY  FG  ++T D+++  LE QG 
Sbjct: 7   IQVSSFPLPPAQYYKLYTDENVRNNRAPKPPAPIQGTYQMFGQQFSTEDNIIRPLEAQGF 66

Query: 59  RQLYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPS--QYARRVEDISLIFKNLHHL 116
           ++LYP+  + D +KEL+ LN  L ++ L+L D+LV  P   Q A ++ED++L+F ++HHL
Sbjct: 67  KRLYPQ--HFDRRKELKKLNHSLLVNFLDLIDLLVHNPDSPQRAEKIEDLNLLFVHIHHL 124

Query: 117 LNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 165
           LN  RPHQAR TL  ++ELQ ++R++  +  +   E+ +  +  +  +L
Sbjct: 125 LNEFRPHQARETLRVMMELQKRQRQETTQRFQNHLEKVREMVNNAFASL 173

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Aedes aegypti (taxid: 7159)

>sp|Q55DQ5|MED7_DICDI Putative mediator of RNA polymerase II transcription subunit 7 OS=Dictyostelium discoideum GN=med7 PE=3 SV=1

 Score =  125 bits (315), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/133 (45%), Positives = 87/133 (65%), Gaps = 1/133 (0%)

Query: 33  IEGTYICFGGNYTTDDVLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDVL 92
           +   Y+ FG  Y+T D+LPSL+E G +QLYPKG +I+   EL+ LNR +  + L+L + L
Sbjct: 150 VGANYVQFGQTYSTVDMLPSLDESGAKQLYPKG-DIEPISELKKLNRSILFNYLQLLETL 208

Query: 93  VERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRRE 152
           +E P  Y  ++EDISL+F N HHLLNS RPHQAR TL+ I+  QI+++ Q+ E IK+  +
Sbjct: 209 IENPKNYQSKIEDISLLFINFHHLLNSYRPHQARETLLSIMNEQIKQKNQSNESIKKALD 268

Query: 153 EAQRRLKESLGTL 165
             +  L  S   L
Sbjct: 269 ICKESLMNSFKNL 281

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Dictyostelium discoideum (taxid: 44689)

>sp|Q7PR68|MED7_ANOGA Mediator of RNA polymerase II transcription subunit 7 OS=Anopheles gambiae GN=MED7 PE=3 SV=2

 Score =  117 bits (292), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 99/161 (61%), Gaps = 5/161 (3%)

Query: 8   PPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDD-VLPSLEEQGVRQLYPKGP 66
           PP  Y  LY D     N AP+PP PI+  Y  FG  ++ DD ++  LE QG ++LYP+  
Sbjct: 15  PPAQYINLYTDENIRKNRAPKPPAPIQDAYTMFGSPFSNDDNIIRPLESQGFKRLYPQ-- 72

Query: 67  NIDFKKELRSLNRELQLHILELSDVLVERPS--QYARRVEDISLIFKNLHHLLNSLRPHQ 124
           + D +KEL+ LN  L ++ L+L D+LV  P   + A ++ED+SL+F ++HHLLN  RPHQ
Sbjct: 73  HFDRRKELKKLNHSLLVNFLDLIDLLVHYPDSPRRAEKIEDLSLLFVHIHHLLNEFRPHQ 132

Query: 125 ARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 165
           AR TL  ++ELQ ++R +  +  +   E+ +  +K +  +L
Sbjct: 133 ARETLRVMMELQKRQRIETAQRFQNHLEKVREMVKNAFASL 173

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Anopheles gambiae (taxid: 7165)

>sp|Q9CZB6|MED7_MOUSE Mediator of RNA polymerase II transcription subunit 7 OS=Mus musculus GN=Med7 PE=2 SV=2

 Score =  114 bits (285), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 99/167 (59%), Gaps = 6/167 (3%)

Query: 3   TAAYPPPP-PYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDD-VLPSLEEQGVRQ 60
            +A PPPP  Y + Y D       AP+PPPPI+ +Y+ FG  +  DD ++  LE QG+ +
Sbjct: 7   VSALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPLESQGIER 66

Query: 61  LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLN 118
           L+P     D KKELR LN  + ++ L+L D+L+  P    R  ++ED+ L+F ++HHL+N
Sbjct: 67  LHPM--QFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHVHHLIN 124

Query: 119 SLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 165
             RPHQAR TL  ++E+Q ++R +  E  ++  E     ++  L +L
Sbjct: 125 EYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASL 171

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Mus musculus (taxid: 10090)

>sp|Q2F7Z4|MED7_PIG Mediator of RNA polymerase II transcription subunit 7 OS=Sus scrofa GN=MED7 PE=2 SV=2

 Score =  114 bits (285), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 99/167 (59%), Gaps = 6/167 (3%)

Query: 3   TAAYPPPP-PYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDD-VLPSLEEQGVRQ 60
            +A PPPP  Y + Y D       AP+PPPPI+ +Y+ FG  +  DD ++  LE QG+ +
Sbjct: 7   VSALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPLESQGIER 66

Query: 61  LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLN 118
           L+P     D KKELR LN  + ++ L+L D+L+  P    R  ++ED+ L+F ++HHL+N
Sbjct: 67  LHPM--QFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHVHHLIN 124

Query: 119 SLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 165
             RPHQAR TL  ++E+Q ++R +  E  ++  E     ++  L +L
Sbjct: 125 EYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASL 171

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Sus scrofa (taxid: 9823)

>sp|Q3T123|MED7_BOVIN Mediator of RNA polymerase II transcription subunit 7 OS=Bos taurus GN=MED7 PE=2 SV=1

 Score =  114 bits (284), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 99/167 (59%), Gaps = 6/167 (3%)

Query: 3   TAAYPPPP-PYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDD-VLPSLEEQGVRQ 60
            +A PPPP  Y + Y D       AP+PPPPI+ +Y+ FG  +  DD ++  LE QG+ +
Sbjct: 7   VSALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPLESQGIER 66

Query: 61  LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLN 118
           L+P     D KKELR LN  + ++ L+L D+L+  P    R  ++ED+ L+F ++HHL+N
Sbjct: 67  LHPM--QFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHVHHLIN 124

Query: 119 SLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 165
             RPHQAR TL  ++E+Q ++R +  E  ++  E     ++  L +L
Sbjct: 125 EYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASL 171

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Bos taurus (taxid: 9913)

>sp|O43513|MED7_HUMAN Mediator of RNA polymerase II transcription subunit 7 OS=Homo sapiens GN=MED7 PE=1 SV=1

 Score =  114 bits (284), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 99/167 (59%), Gaps = 6/167 (3%)

Query: 3   TAAYPPPP-PYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDD-VLPSLEEQGVRQ 60
            +A PPPP  Y + Y D       AP+PPPPI+ +Y+ FG  +  DD ++  LE QG+ +
Sbjct: 7   VSALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPLESQGIER 66

Query: 61  LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLN 118
           L+P     D KKELR LN  + ++ L+L D+L+  P    R  ++ED+ L+F ++HHL+N
Sbjct: 67  LHPM--QFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHVHHLIN 124

Query: 119 SLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 165
             RPHQAR TL  ++E+Q ++R +  E  ++  E     ++  L +L
Sbjct: 125 EYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASL 171

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Homo sapiens (taxid: 9606)

>sp|Q7ZV35|MED7_DANRE Mediator of RNA polymerase II transcription subunit 7 OS=Danio rerio GN=med7 PE=2 SV=1

 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 99/167 (59%), Gaps = 6/167 (3%)

Query: 3   TAAYPPPP-PYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDD-VLPSLEEQGVRQ 60
            +A PPPP  Y + Y D       AP+PPPPI  +Y+ FG  +  DD ++  LE QG+ +
Sbjct: 7   VSALPPPPMQYIKEYTDENVRKGLAPKPPPPIRDSYMMFGNQFQCDDLIIRPLESQGIER 66

Query: 61  LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLN 118
           L+P     D K+EL+ LN  + ++ L+L D+L++ P    R  ++ED+ L+F ++HHL+N
Sbjct: 67  LHPM--QFDHKRELKKLNMSILVNFLDLLDILIKSPGSIKREEKLEDLKLLFVHMHHLIN 124

Query: 119 SLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTL 165
             RPHQAR TL  ++E+Q ++R +  E  ++  E     ++  L +L
Sbjct: 125 EYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVVEMIQGCLSSL 171

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
255581564	168	Cofactor required for Sp1 transcriptiona	1.0	1.0	0.922	9e-75
225441569	168	PREDICTED: mediator of RNA polymerase II	1.0	1.0	0.916	2e-74
449437536	168	PREDICTED: mediator of RNA polymerase II	1.0	1.0	0.880	3e-74
224139944	168	predicted protein [Populus trichocarpa]	0.928	0.928	0.910	9e-74
164605534	168	CM0545.310.nc [Lotus japonicus]	1.0	1.0	0.880	9e-72
297810431	167	predicted protein [Arabidopsis lyrata su	0.994	1.0	0.844	4e-71
359806507	168	uncharacterized protein LOC100792250 [Gl	0.994	0.994	0.862	5e-71
145334287	168	Mediator complex, subunit Med7 [Arabidop	1.0	1.0	0.827	5e-70
326488527	179	predicted protein [Hordeum vulgare subsp	0.994	0.932	0.839	9e-69
297810397	168	transcription coactivator [Arabidopsis l	1.0	1.0	0.857	1e-68

>gi|255581564|ref|XP_002531587.1| Cofactor required for Sp1 transcriptional activation subunit, putative [Ricinus communis] gi|223528783|gb|EEF30790.1| Cofactor required for Sp1 transcriptional activation subunit, putative [Ricinus communis]

 Score =  284 bits (726), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 155/168 (92%), Positives = 163/168 (97%)

Query: 1   MATAAYPPPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQ 60
           MATAAYPPPPPYYRLYKDY++NP SAPEPPPPI+GTY CFG NYTT+ VLPSLEEQGVRQ
Sbjct: 1   MATAAYPPPPPYYRLYKDYIENPKSAPEPPPPIDGTYTCFGANYTTEYVLPSLEEQGVRQ 60

Query: 61  LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSL 120
           LYPKGPN+DFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSL
Sbjct: 61  LYPKGPNVDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTLEGQ 168
           RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQ+ LKE+LGTL+GQ
Sbjct: 121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQKLLKEALGTLDGQ 168

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441569|ref|XP_002281390.1| PREDICTED: mediator of RNA polymerase II transcription subunit 7 [Vitis vinifera] gi|297739781|emb|CBI29963.3| unnamed protein product [Vitis vinifera]

 Score =  283 bits (723), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 154/168 (91%), Positives = 160/168 (95%)

Query: 1   MATAAYPPPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQ 60
           MATA YPPPPPYYRLYKDY+QNP SAPEPPPPIEGTY  FG  YTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPYYRLYKDYIQNPKSAPEPPPPIEGTYALFGATYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSL 120
           LYPKG N+DFKKELRSLNRELQLH+LEL+DVLVERPSQYARRVEDISLIFKNLHHLLNSL
Sbjct: 61  LYPKGSNVDFKKELRSLNRELQLHLLELADVLVERPSQYARRVEDISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTLEGQ 168
           RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQR LKE++GTLEGQ
Sbjct: 121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRLLKEAVGTLEGQ 168

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437536|ref|XP_004136548.1| PREDICTED: mediator of RNA polymerase II transcription subunit 7b-like [Cucumis sativus]

 Score =  283 bits (723), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 148/168 (88%), Positives = 161/168 (95%)

Query: 1   MATAAYPPPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQ 60
           MATA YPPPPP+Y+LYKDYLQ+P SAPEPPPPIEGTY+CFG NYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSL 120
           LYP+GPN+D+KKELRSLNRELQLHILEL+D+LVERPSQYARRVE+ISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTLEGQ 168
           RPHQARATLIHILELQI+RR+QAVEDIKRRREEAQR L ESL TL+G 
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139944|ref|XP_002323352.1| predicted protein [Populus trichocarpa] gi|222867982|gb|EEF05113.1| predicted protein [Populus trichocarpa]

 Score =  281 bits (718), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 142/156 (91%), Positives = 151/156 (96%)

Query: 13  YRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQLYPKGPNIDFKK 72
           YRLYKDY++NP SAPEPPPPIEGTY+CF  +YTTDDVLPSLEEQGVRQLYPKGPN+DFKK
Sbjct: 13  YRLYKDYIENPKSAPEPPPPIEGTYVCFASSYTTDDVLPSLEEQGVRQLYPKGPNVDFKK 72

Query: 73  ELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHI 132
           ELRSLNRELQLHILEL+DVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHI
Sbjct: 73  ELRSLNRELQLHILELADVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHI 132

Query: 133 LELQIQRRKQAVEDIKRRREEAQRRLKESLGTLEGQ 168
           LELQIQRRKQAVEDIKR+REEAQ+ LKE+LGTL GQ
Sbjct: 133 LELQIQRRKQAVEDIKRQREEAQKLLKEALGTLAGQ 168

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|164605534|dbj|BAF98600.1| CM0545.310.nc [Lotus japonicus]

 Score =  274 bits (701), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 148/168 (88%), Positives = 158/168 (94%)

Query: 1   MATAAYPPPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQ 60
           MATA YPPPPPYYRLYKDYLQNP+SAPEPPPPIEGTY+CFG NYTT DVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPYYRLYKDYLQNPDSAPEPPPPIEGTYVCFGANYTTSDVLPSLEEQGVRQ 60

Query: 61  LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSL 120
           LY KGPNIDFKKELRSLN ELQLHILEL+D+L+ERPSQYARRVE+IS +FKNLHHLLNSL
Sbjct: 61  LYSKGPNIDFKKELRSLNAELQLHILELADILIERPSQYARRVEEISTVFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTLEGQ 168
           RPHQARATLIHILELQIQRRKQAVEDIKRRREEA+  LKE+L  L+GQ
Sbjct: 121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEARSLLKEALTILDGQ 168

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810431|ref|XP_002873099.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297318936|gb|EFH49358.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  272 bits (695), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 141/167 (84%), Positives = 156/167 (93%)

Query: 1   MATAAYPPPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQ 60
           MATA YPPPPPYYRLYKDY +NPNSAPEP PPIEGTY+CFGGNYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDYSENPNSAPEPHPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSL 120
           LYPK  N+D+KKELRSLNRELQLHILEL+DVLV+RPSQYA+R+ +IS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNVDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTLEG 167
           RPHQARATLIHI+ELQIQ+RKQAVEDIKRRREEAQR LK++  TL+G
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQRLLKDAFVTLDG 167

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806507|ref|NP_001241256.1| uncharacterized protein LOC100792250 [Glycine max] gi|255645739|gb|ACU23363.1| unknown [Glycine max]

 Score =  271 bits (694), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 144/167 (86%), Positives = 158/167 (94%)

Query: 1   MATAAYPPPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQ 60
           MATA YPPPPPYYRLYKDYLQ+PNSAP+PPPPIEGTY+CFG NYTT DVLP+LEEQGVRQ
Sbjct: 1   MATATYPPPPPYYRLYKDYLQDPNSAPDPPPPIEGTYLCFGANYTTSDVLPTLEEQGVRQ 60

Query: 61  LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSL 120
           LY KGPN+DFKKELRSLN ELQLH+LEL+D+L+ERPSQYARRVE+IS +FKNLHHLLNSL
Sbjct: 61  LYSKGPNVDFKKELRSLNGELQLHVLELADILIERPSQYARRVEEISTVFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTLEG 167
           RPHQARATLIHILELQIQRRKQAVEDIK+RREEA+R L ESL TL+G
Sbjct: 121 RPHQARATLIHILELQIQRRKQAVEDIKKRREEARRLLNESLATLDG 167

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334287|ref|NP_001078525.1| Mediator complex, subunit Med7 [Arabidopsis thaliana] gi|145357596|ref|NP_195970.2| Mediator complex, subunit Med7 [Arabidopsis thaliana] gi|334187401|ref|NP_001190215.1| Mediator complex, subunit Med7 [Arabidopsis thaliana] gi|75181253|sp|Q9LZD7.1|MED7B_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 7b gi|7378634|emb|CAB83310.1| transcriptional co-activator-like protein [Arabidopsis thaliana] gi|19715581|gb|AAL91616.1| At5g03505/C320EPL23M [Arabidopsis thaliana] gi|20453355|gb|AAM19916.1| At5g03505/C320EPL23M [Arabidopsis thaliana] gi|222424056|dbj|BAH19989.1| AT5G03500 [Arabidopsis thaliana] gi|332003230|gb|AED90613.1| Mediator complex, subunit Med7 [Arabidopsis thaliana] gi|332003231|gb|AED90614.1| Mediator complex, subunit Med7 [Arabidopsis thaliana] gi|332003232|gb|AED90615.1| Mediator complex, subunit Med7 [Arabidopsis thaliana]

 Score =  268 bits (685), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 139/168 (82%), Positives = 156/168 (92%)

Query: 1   MATAAYPPPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQ 60
           MATA YPPPPPYYRLYKD+ +N +SAPEPPPPIEGTY+CFGGNYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDFSENTDSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSL 120
           LYPK  N+D+KKELRSLNRELQLHILEL+DVLV+RPSQYA+R+ +IS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTLEGQ 168
           RPHQARATLIHI+ELQIQ+RKQAVEDIKRRREEAQ  LK++  TL+GQ
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDGQ 168

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326488527|dbj|BAJ93932.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326496443|dbj|BAJ94683.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  264 bits (675), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 141/168 (83%), Positives = 156/168 (92%), Gaps = 1/168 (0%)

Query: 1   MATA-AYPPPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDDVLPSLEEQGVR 59
           MAT+ AYPPPPP+YRLYKD+ Q+P+SAPEPPPPIEG+Y  FG  YTTD VLPSLE+QGVR
Sbjct: 3   MATSSAYPPPPPFYRLYKDFEQDPSSAPEPPPPIEGSYQLFGATYTTDVVLPSLEDQGVR 62

Query: 60  QLYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNS 119
           QLYPKGP+IDFKKELR+LNRELQLHILEL+D+LVERPSQYARRVEDISLIFKNLHHLLNS
Sbjct: 63  QLYPKGPDIDFKKELRTLNRELQLHILELADILVERPSQYARRVEDISLIFKNLHHLLNS 122

Query: 120 LRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTLEG 167
           LRPHQARATLIH+LE QIQRRKQA+EDIK+RREEAQR L ESL  +EG
Sbjct: 123 LRPHQARATLIHLLESQIQRRKQAIEDIKQRREEAQRLLGESLIIIEG 170

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810397|ref|XP_002873082.1| transcription coactivator [Arabidopsis lyrata subsp. lyrata] gi|297318919|gb|EFH49341.1| transcription coactivator [Arabidopsis lyrata subsp. lyrata]

 Score =  263 bits (673), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 144/168 (85%), Positives = 158/168 (94%)

Query: 1   MATAAYPPPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQ 60
           MATA YPPPPPYYRLYKDY +NPNSAPEPPPPIEGTY+CFGGNYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDYSENPNSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSL 120
           LYPK  N+D+KKELRSLNRELQLHILEL+DVLV+RPSQYA+R+ +IS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNVDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTLEGQ 168
           RPHQARATLIHI+ELQIQRRKQAVEDIKRRREEAQR LK++  TL+GQ
Sbjct: 121 RPHQARATLIHIMELQIQRRKQAVEDIKRRREEAQRLLKDAYVTLDGQ 168

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
TAIR|locus:2143523	168	AT5G03220 [Arabidopsis thalian	1.0	1.0	0.761	5.4e-63
TAIR|locus:2831839	168	AT5G03500 [Arabidopsis thalian	1.0	1.0	0.744	3.4e-61
DICTYBASE|DDB_G0269568	345	med7 "putative mediator comple	0.785	0.382	0.458	1.3e-27
UNIPROTKB|F1MIJ0	233	HAVCR2 "Uncharacterized protei	0.779	0.562	0.360	1.3e-20
UNIPROTKB|Q3T123	233	MED7 "Mediator of RNA polymera	0.779	0.562	0.360	1.3e-20
UNIPROTKB|E2RK91	233	MED7 "Uncharacterized protein"	0.779	0.562	0.360	1.3e-20
UNIPROTKB|E5RIE8	195	MED7 "Mediator of RNA polymera	0.779	0.671	0.360	1.3e-20
UNIPROTKB|O43513	233	MED7 "Mediator of RNA polymera	0.779	0.562	0.360	1.3e-20
UNIPROTKB|Q2F7Z4	233	MED7 "Mediator of RNA polymera	0.779	0.562	0.360	1.3e-20
MGI|MGI:1913463	233	Med7 "mediator complex subunit	0.779	0.562	0.360	1.3e-20

TAIR|locus:2143523 AT5G03220 [Arabidopsis thaliana (taxid:3702)]

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 128/168 (76%), Positives = 143/168 (85%)

Query:     1 MATAAXXXXXXXXRLYKDYLQNPNSAXXXXXXIEGTYICFGGNYTTDDVLPSLEEQGVRQ 60
             MATA         RLYKDY +NPNSA      IEGTY+CFGGNYTT+DVLPSLEEQGV Q
Sbjct:     1 MATATYPPPPPYYRLYKDYSENPNSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query:    61 LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSL 120
             LYPK  N+D+K ELRSLNRELQLHILEL+DVLV+RPSQYA+R+ +IS IFKNLHHLLNSL
Sbjct:    61 LYPKDSNLDYKNELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query:   121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTLEGQ 168
             RPHQARATLIHI+ELQIQ+RKQAVEDIKRRREEAQR LK++  TL+GQ
Sbjct:   121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQRLLKDAYLTLDGQ 168

GO:0005634 "nucleus" evidence=ISM

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016592 "mediator complex" evidence=IDA

TAIR|locus:2831839 AT5G03500 [Arabidopsis thaliana (taxid:3702)]

 Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
 Identities = 125/168 (74%), Positives = 142/168 (84%)

Query:     1 MATAAXXXXXXXXRLYKDYLQNPNSAXXXXXXIEGTYICFGGNYTTDDVLPSLEEQGVRQ 60
             MATA         RLYKD+ +N +SA      IEGTY+CFGGNYTT+DVLPSLEEQGV Q
Sbjct:     1 MATATYPPPPPYYRLYKDFSENTDSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query:    61 LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSL 120
             LYPK  N+D+KKELRSLNRELQLHILEL+DVLV+RPSQYA+R+ +IS IFKNLHHLLNSL
Sbjct:    61 LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query:   121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTLEGQ 168
             RPHQARATLIHI+ELQIQ+RKQAVEDIKRRREEAQ  LK++  TL+GQ
Sbjct:   121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDGQ 168

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016592 "mediator complex" evidence=IDA

DICTYBASE|DDB_G0269568 med7 "putative mediator complex subunit 7" [Dictyostelium discoideum (taxid:44689)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 61/133 (45%), Positives = 87/133 (65%)

Query:    33 IEGTYICFGGNYTTDDVLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDVL 92
             +   Y+ FG  Y+T D+LPSL+E G +QLYPKG +I+   EL+ LNR +  + L+L + L
Sbjct:   150 VGANYVQFGQTYSTVDMLPSLDESGAKQLYPKG-DIEPISELKKLNRSILFNYLQLLETL 208

Query:    93 VERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRRE 152
             +E P  Y  ++EDISL+F N HHLLNS RPHQAR TL+ I+  QI+++ Q+ E IK+  +
Sbjct:   209 IENPKNYQSKIEDISLLFINFHHLLNSYRPHQARETLLSIMNEQIKQKNQSNESIKKALD 268

Query:   153 EAQRRLKESLGTL 165
               +  L  S   L
Sbjct:   269 ICKESLMNSFKNL 281

GO:0016592 "mediator complex" evidence=IEA;ISS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1MIJ0 HAVCR2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 49/136 (36%), Positives = 82/136 (60%)

Query:    33 IEGTYICFGGNYTTDD-VLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDV 91
             I+ +Y+ FG  +  DD ++  LE QG+ +L+P     D KKELR LN  + ++ L+L D+
Sbjct:    38 IKDSYMMFGNQFQCDDLIIRPLESQGIERLHPM--QFDHKKELRKLNMSILINFLDLLDI 95

Query:    92 LVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKR 149
             L+  P    R  ++ED+ L+F ++HHL+N  RPHQAR TL  ++E+Q ++R +  E  ++
Sbjct:    96 LIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQK 155

Query:   150 RREEAQRRLKESLGTL 165
               E     ++  L +L
Sbjct:   156 HLERVIEMIQNCLASL 171

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|Q3T123 MED7 "Mediator of RNA polymerase II transcription subunit 7" [Bos taurus (taxid:9913)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 49/136 (36%), Positives = 82/136 (60%)

Query:    33 IEGTYICFGGNYTTDD-VLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDV 91
             I+ +Y+ FG  +  DD ++  LE QG+ +L+P     D KKELR LN  + ++ L+L D+
Sbjct:    38 IKDSYMMFGNQFQCDDLIIRPLESQGIERLHPM--QFDHKKELRKLNMSILINFLDLLDI 95

Query:    92 LVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKR 149
             L+  P    R  ++ED+ L+F ++HHL+N  RPHQAR TL  ++E+Q ++R +  E  ++
Sbjct:    96 LIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQK 155

Query:   150 RREEAQRRLKESLGTL 165
               E     ++  L +L
Sbjct:   156 HLERVIEMIQNCLASL 171

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|E2RK91 MED7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 49/136 (36%), Positives = 82/136 (60%)

Query:    33 IEGTYICFGGNYTTDD-VLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDV 91
             I+ +Y+ FG  +  DD ++  LE QG+ +L+P     D KKELR LN  + ++ L+L D+
Sbjct:    38 IKDSYMMFGNQFQCDDLIIRPLESQGIERLHPM--QFDHKKELRKLNMSILINFLDLLDI 95

Query:    92 LVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKR 149
             L+  P    R  ++ED+ L+F ++HHL+N  RPHQAR TL  ++E+Q ++R +  E  ++
Sbjct:    96 LIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQK 155

Query:   150 RREEAQRRLKESLGTL 165
               E     ++  L +L
Sbjct:   156 HLERVIEMIQNCLASL 171

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|E5RIE8 MED7 "Mediator of RNA polymerase II transcription subunit 7" [Homo sapiens (taxid:9606)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 49/136 (36%), Positives = 82/136 (60%)

Query:    33 IEGTYICFGGNYTTDD-VLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDV 91
             I+ +Y+ FG  +  DD ++  LE QG+ +L+P     D KKELR LN  + ++ L+L D+
Sbjct:    38 IKDSYMMFGNQFQCDDLIIRPLESQGIERLHPM--QFDHKKELRKLNMSILINFLDLLDI 95

Query:    92 LVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKR 149
             L+  P    R  ++ED+ L+F ++HHL+N  RPHQAR TL  ++E+Q ++R +  E  ++
Sbjct:    96 LIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQK 155

Query:   150 RREEAQRRLKESLGTL 165
               E     ++  L +L
Sbjct:   156 HLERVIEMIQNCLASL 171

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

UNIPROTKB|O43513 MED7 "Mediator of RNA polymerase II transcription subunit 7" [Homo sapiens (taxid:9606)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 49/136 (36%), Positives = 82/136 (60%)

Query:    33 IEGTYICFGGNYTTDD-VLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDV 91
             I+ +Y+ FG  +  DD ++  LE QG+ +L+P     D KKELR LN  + ++ L+L D+
Sbjct:    38 IKDSYMMFGNQFQCDDLIIRPLESQGIERLHPM--QFDHKKELRKLNMSILINFLDLLDI 95

Query:    92 LVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKR 149
             L+  P    R  ++ED+ L+F ++HHL+N  RPHQAR TL  ++E+Q ++R +  E  ++
Sbjct:    96 LIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQK 155

Query:   150 RREEAQRRLKESLGTL 165
               E     ++  L +L
Sbjct:   156 HLERVIEMIQNCLASL 171

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0003713 "transcription coactivator activity" evidence=TAS

GO:0005667 "transcription factor complex" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

UNIPROTKB|Q2F7Z4 MED7 "Mediator of RNA polymerase II transcription subunit 7" [Sus scrofa (taxid:9823)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 49/136 (36%), Positives = 82/136 (60%)

Query:    33 IEGTYICFGGNYTTDD-VLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDV 91
             I+ +Y+ FG  +  DD ++  LE QG+ +L+P     D KKELR LN  + ++ L+L D+
Sbjct:    38 IKDSYMMFGNQFQCDDLIIRPLESQGIERLHPM--QFDHKKELRKLNMSILINFLDLLDI 95

Query:    92 LVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKR 149
             L+  P    R  ++ED+ L+F ++HHL+N  RPHQAR TL  ++E+Q ++R +  E  ++
Sbjct:    96 LIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQK 155

Query:   150 RREEAQRRLKESLGTL 165
               E     ++  L +L
Sbjct:   156 HLERVIEMIQNCLASL 171

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

MGI|MGI:1913463 Med7 "mediator complex subunit 7" [Mus musculus (taxid:10090)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 49/136 (36%), Positives = 82/136 (60%)

Query:    33 IEGTYICFGGNYTTDD-VLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDV 91
             I+ +Y+ FG  +  DD ++  LE QG+ +L+P     D KKELR LN  + ++ L+L D+
Sbjct:    38 IKDSYMMFGNQFQCDDLIIRPLESQGIERLHPM--QFDHKKELRKLNMSILINFLDLLDI 95

Query:    92 LVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKR 149
             L+  P    R  ++ED+ L+F ++HHL+N  RPHQAR TL  ++E+Q ++R +  E  ++
Sbjct:    96 LIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQK 155

Query:   150 RREEAQRRLKESLGTL 165
               E     ++  L +L
Sbjct:   156 HLERVIEMIQNCLASL 171

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005667 "transcription factor complex" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0016592 "mediator complex" evidence=IDA

GO:0019827 "stem cell maintenance" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LZD7	MED7B_ARATH	No assigned EC number	0.8273	1.0	1.0	yes	no
Q9LYW3	MED7A_ARATH	No assigned EC number	0.8452	1.0	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00025449001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (168 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00034251001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (258 aa)					•	•	•		0.532
	GSVIVG00000518001	SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (194 aa)					•	•	•		0.529

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	168
pfam05983	161	pfam05983, Med7, MED7 protein	9e-66

>gnl|CDD|218839 pfam05983, Med7, MED7 protein

 Score =  197 bits (504), Expect = 9e-66
 Identities = 74/161 (45%), Positives = 105/161 (65%), Gaps = 2/161 (1%)

Query: 1   MATAAYPPPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQ 60
             ++ YPPPPPYY+L+ D        P PPPP EG+Y  FG  Y+ +D LPSLE QG+ Q
Sbjct: 1   QISSLYPPPPPYYKLFTDENLELRFLPPPPPPTEGSYRVFGETYSLEDKLPSLESQGIEQ 60

Query: 61  LYPK--GPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLN 118
           LYP     + D K+EL+ LN+ L L+ LEL  +LV  P QY +++ED+ L+F N HHLLN
Sbjct: 61  LYPTSCDASEDRKEELKKLNKSLLLNFLELLGILVINPEQYEKKIEDLRLLFINAHHLLN 120

Query: 119 SLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLK 159
             RPHQAR +LI ++E Q+  +++ +E I++  EE +  L+
Sbjct: 121 EYRPHQARESLIMLMEEQLDEKREEIEAIRKVLEEVREVLE 161

This family consists of several eukaryotic proteins which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multi-step process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus. Length = 161

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
KOG0570	223	consensus Transcriptional coactivator [Transcripti	100.0
PF05983	162	Med7: MED7 protein; InterPro: IPR009244 The Mediat	100.0
PF10018	188	Med4: Vitamin-D-receptor interacting Mediator subu	89.08
KOG4552	272	consensus Vitamin-D-receptor interacting protein c	87.09
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	85.19

>KOG0570 consensus Transcriptional coactivator [Transcription]

Probab=100.00  E-value=8.6e-67  Score=420.85  Aligned_cols=167  Identities=54%  Similarity=0.917  Sum_probs=163.5

Q ss_pred             CCCCCCCCChhhhhccccccCCCCCCCCCCCCCCCCceecCceeecCCCCCCcccccccccCCCCCCccHHHHHHHHHHH
Q 030977            1 MATAAYPPPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQLYPKGPNIDFKKELRSLNRE   80 (168)
Q Consensus         1 ~~~S~fPpPP~fyk~yt~~~~~~~~~ppPp~P~~g~y~~FG~~~~~~~~lp~Le~~gi~~Ly~~~~~~D~k~ELkkL~~s   80 (168)
                      |++|+|||||+|||+||++|++.+++||||+|+.|+|.|||+.|.+++.||+|+++||+|||+.+.++|+|.||++||+|
T Consensus         6 q~~S~~PpPPpY~k~yt~~ni~~~sAP~pP~p~~~tY~~FG~~~~~ddvip~Le~~Gv~qLykkd~~~d~K~ELRkLnrs   85 (223)
T KOG0570|consen    6 QTVSAYPPPPPYYKLYTDENINKGSAPPPPPPILGTYKMFGEEYREDDVIPPLEEQGVPQLYKKDNNYDYKKELRKLNRS   85 (223)
T ss_pred             ccccCCCcCChHHHHhhhccccCCCCCcccCCCccchhhhccccchhccccChhhcChHhhCcccccccHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999987789999999999999


Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977           81 LQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKE  160 (168)
Q Consensus        81 ll~~fleLl~~l~~~P~~~~~ki~~i~~l~iNmhhllNe~RPhQARetL~~~le~Ql~~rr~~~~~ir~~~~~~~~~L~~  160 (168)
                      |++|||||+|+|+++|+.+++||++|++||+|||||||+|||||||||||+|||+|+++++++++.++++|.++.++|.+
T Consensus        86 lllnfleL~~ILi~~P~~~e~Kvedi~tifvnlHHLiNeyRPhQaResLi~lmE~Qi~~~~~~ve~~kk~~~~~~e~l~d  165 (223)
T KOG0570|consen   86 LLLNFLELLDILIRAPDMREEKVEDIRTIFVNLHHLINEYRPHQARESLIMLMERQIEQRSDIVEDFKKHLRQVREVLDD  165 (223)
T ss_pred             HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhC
Q 030977          161 SLGTLEG  167 (168)
Q Consensus       161 ~~~~~~~  167 (168)
                      +|.+|.+
T Consensus       166 ~~~tL~~  172 (223)
T KOG0570|consen  166 QFQTLRG  172 (223)
T ss_pred             HHHhhcc
Confidence            9999874

>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=100.00  E-value=3.9e-65  Score=404.16  Aligned_cols=157  Identities=51%  Similarity=0.954  Sum_probs=107.4

Q ss_pred             CCCCCCCChhhhhccccccCCCCCCCCCCCCCCCCceecCceeecCCCCCCcccccccccCCCC----CCccHHHHHHHH
Q 030977            2 ATAAYPPPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQLYPKG----PNIDFKKELRSL   77 (168)
Q Consensus         2 ~~S~fPpPP~fyk~yt~~~~~~~~~ppPp~P~~g~y~~FG~~~~~~~~lp~Le~~gi~~Ly~~~----~~~D~k~ELkkL   77 (168)
                      +||+|||||+|||+||++|.. ..++|||+|.+|.|++||+.|++++.+|+|+++||+|||+.+    .+.|++.||+||
T Consensus         2 ~~s~fPpPP~~yk~yt~~n~l-~~~~pPp~P~~~~y~~FG~~~~~~~~~p~L~~~gi~qLy~~~~~~~~~~d~~~eLkkL   80 (162)
T PF05983_consen    2 ISSLFPPPPPFYKLYTDENEL-RFLPPPPPPIDGEYRVFGETWSTEDKLPSLESQGIRQLYPPDDDPSPSVDRKKELKKL   80 (162)
T ss_dssp             ----S----GGGGG--HHHGG-GGGS-----SSGGGSTS------------------------------HHHHHHHHHHH
T ss_pred             CCCCCCCchHHHHHcCChhhc-cCCCCcccCCCCcceeCCCEeecCCCCCCchhccccccCCCccccCCCchHHHHHHHH
Confidence            589999999999999999843 345677777899999999999999999999999999999986    358999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977           78 NRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRR  157 (168)
Q Consensus        78 ~~sll~~fleLl~~l~~~P~~~~~ki~~i~~l~iNmhhllNe~RPhQARetL~~~le~Ql~~rr~~~~~ir~~~~~~~~~  157 (168)
                      ++|||+|||+|+|+|+.+|+++++||+||++||+|||||||+||||||||+|++||++|+++||++|++|+++|++|+++
T Consensus        81 ~~sll~nfleLl~~l~~~P~~~~~ki~~i~~L~~NmhhllNeyRPhQARetLi~~me~Ql~~kr~~i~~i~~~~~~~~~~  160 (162)
T PF05983_consen   81 NKSLLLNFLELLDILSKNPSQYERKIEDIRLLFINMHHLLNEYRPHQARETLIMMMEEQLEEKREEIEEIRKVCEKAREV  160 (162)
T ss_dssp             HHHHHHHHHHHTTSS---CCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH
Q 030977          158 LK  159 (168)
Q Consensus       158 L~  159 (168)
                      |+
T Consensus       161 le  162 (162)
T PF05983_consen  161 LE  162 (162)
T ss_dssp             H-
T ss_pred             hC
Confidence            85

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.

>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=89.08  E-value=4  Score=32.82  Aligned_cols=61  Identities=25%  Similarity=0.331  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977          102 RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESL  162 (168)
Q Consensus       102 ki~~i~~l~iNmhhllNe~RPhQARetL~~~le~Ql~~rr~~~~~ir~~~~~~~~~L~~~~  162 (168)
                      .+++|...=-.+...|..+.-||....-|.-|+.+++.+.+.|..+-+.+..++..|..+.
T Consensus         3 ~~~~L~~~d~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~   63 (188)
T PF10018_consen    3 LAEDLIEADDELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP   63 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666667788899999999999999999999999999999999999999999998876

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex

>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]

Probab=87.09  E-value=17  Score=30.67  Aligned_cols=39  Identities=21%  Similarity=0.461  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977          123 HQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKES  161 (168)
Q Consensus       123 hQARetL~~~le~Ql~~rr~~~~~ir~~~~~~~~~L~~~  161 (168)
                      .|-||.++..|+..++.|.+.|+++++.+++|+-+|..+
T Consensus        69 q~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta  107 (272)
T KOG4552|consen   69 QQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTTA  107 (272)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            466899999999999999999999999999999988763

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=85.19  E-value=13  Score=32.15  Aligned_cols=85  Identities=11%  Similarity=0.172  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHhcCCch---------HHH----------HHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Q 030977           79 RELQLHILELSDVLVERPSQ---------YAR----------RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQR  139 (168)
Q Consensus        79 ~sll~~fleLl~~l~~~P~~---------~~~----------ki~~i~~l~iNmhhllNe~RPhQARetL~~~le~Ql~~  139 (168)
                      ..+|...+.++..|...|..         ..+          ++.||+..+.-+--...-+.-|++++.-+..+++.++.
T Consensus       125 S~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~  204 (269)
T PF05278_consen  125 SYYLECLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLEL  204 (269)
T ss_pred             HHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666677777666632         112          35566655544443333455577788777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Q 030977          140 RKQAVEDIKRRREEAQRRLKESLG  163 (168)
Q Consensus       140 rr~~~~~ir~~~~~~~~~L~~~~~  163 (168)
                      .+.+.+.+...+++++.-++++-.
T Consensus       205 ~~~ELe~~~EeL~~~Eke~~e~~~  228 (269)
T PF05278_consen  205 KKEELEELEEELKQKEKEVKEIKE  228 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777666666665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	168
1yke_A	108	Structure Of The Mediator Med7MED21 SUBCOMPLEX Leng		3e-09

>pdb|1YKE|A Chain A, Structure Of The Mediator Med7MED21 SUBCOMPLEX Length = 108

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 87  ELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVED 146
           EL  VL   P  Y R+VE+I  I  N+HHLLN  RPHQ+R +LI +LE Q++ ++  + +
Sbjct: 35  ELIGVLSINPDMYERKVENIRTILVNIHHLLNEYRPHQSRESLIMLLEEQLEYKRGEIRE 94
Query: 147 IKR 149
           I++
Sbjct: 95  IEQ 97

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	168
1ykh_A	108	RNA polymerase II mediator complex protein MED7; g	2e-31
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1ykh_A RNA polymerase II mediator complex protein MED7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.2 PDB: 1yke_A Length = 108

 Score =  108 bits (270), Expect = 2e-31
 Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 5/107 (4%)

Query: 58  VRQLYPKGPN-----IDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKN 112
           +  +     N         +ELR L + L L+ LEL  VL   P  Y R+VE+I  I  N
Sbjct: 1   MASMKKSTENESTNYQYKIQELRKLLKSLLLNYLELIGVLSINPDMYERKVENIRTILVN 60

Query: 113 LHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLK 159
           +HHLLN  RPHQ+R +LI +LE Q++ ++  + +I++  ++   +L 
Sbjct: 61  IHHLLNEYRPHQSRESLIMLLEEQLEYKRGEIREIEQVCKQVHDKLT 107

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 32/193 (16%), Positives = 65/193 (33%), Gaps = 37/193 (19%)

Query: 8   PPPPYYRLYKDYLQNPNSAPEPPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQLYPKG-- 65
            P  Y +++      P SA  P   +               V+  L +  + +  PK   
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLS-LIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425

Query: 66  ---PNIDFKKELRSLNRELQLH--ILE---------LSDVLVERPSQY------------ 99
              P+I  + +++  N E  LH  I++           D++     QY            
Sbjct: 426 ISIPSIYLELKVKLEN-EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484

Query: 100 --ARRVEDISLIFKNLHHLLNSLR----PHQARATLIHILELQIQRRKQAVEDIKRRREE 153
               R+    ++F +   L   +R       A  ++++ L  Q++  K  + D   + E 
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL-QQLKFYKPYICDNDPKYER 543

Query: 154 AQRRLKESLGTLE 166
               + + L  +E
Sbjct: 544 LVNAILDFLPKIE 556

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 25/142 (17%), Positives = 56/142 (39%), Gaps = 26/142 (18%)

Query: 43  NYTTDDVLPSLEEQGVRQLYPKGPNIDFKKELRSL--NRELQLHILE----------LSD 90
            Y   D+L   E+  V     K    D +   +S+    E+  HI+           L  
Sbjct: 15  QYQYKDILSVFEDAFVDNFDCK----DVQDMPKSILSKEEID-HIIMSKDAVSGTLRLFW 69

Query: 91  VLVERPSQ-YARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRK-----QAV 144
            L+ +  +   + VE+  ++  N   L++ ++  Q + +++  + ++ QR +     Q  
Sbjct: 70  TLLSKQEEMVQKFVEE--VLRINYKFLMSPIKTEQRQPSMMTRMYIE-QRDRLYNDNQVF 126

Query: 145 EDIKRRREEAQRRLKESLGTLE 166
                 R +   +L+++L  L 
Sbjct: 127 AKYNVSRLQPYLKLRQALLELR 148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
1ykh_A	108	RNA polymerase II mediator complex protein MED7; g	100.0
3fbi_A	84	Mediator of RNA polymerase II transcription subuni	99.4
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	93.92
1zxa_A	67	CGMP-dependent protein kinase 1, alpha isozyme; pa	91.64

>1ykh_A RNA polymerase II mediator complex protein MED7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.2 PDB: 1yke_A

Probab=100.00  E-value=6.7e-39  Score=237.62  Aligned_cols=92  Identities=40%  Similarity=0.681  Sum_probs=88.1

Q ss_pred             ccHH-HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977           68 IDFK-KELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVED  146 (168)
Q Consensus        68 ~D~k-~ELkkL~~sll~~fleLl~~l~~~P~~~~~ki~~i~~l~iNmhhllNe~RPhQARetL~~~le~Ql~~rr~~~~~  146 (168)
                      .|.| .||+||++|||+|||+|+|+|+.+|+.+++||+||++||+|||||||+||||||||||+.||++|+++||+++++
T Consensus        15 ~~~k~~ELkkLn~SlL~nfLeLl~~l~~~P~~~~~kv~di~~lfiNmHhLlNeyRPhQARetL~~~le~Qi~~kr~e~~~   94 (108)
T 1ykh_A           15 YQYKIQELRKLLKSLLLNYLELIGVLSINPDMYERKVENIRTILVNIHHLLNEYRPHQSRESLIMLLEEQLEYKRGEIRE   94 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSSCCCGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444 499999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 030977          147 IKRRREEAQRRLK  159 (168)
Q Consensus       147 ir~~~~~~~~~L~  159 (168)
                      |+++|++|+++|+
T Consensus        95 i~~~~~~~~~~L~  107 (108)
T 1ykh_A           95 IEQVCKQVHDKLT  107 (108)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999885

>3fbi_A Mediator of RNA polymerase II transcription subunit 7; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_A

Probab=99.40  E-value=6.7e-14  Score=99.30  Aligned_cols=43  Identities=30%  Similarity=0.733  Sum_probs=33.3

Q ss_pred             CCCCCCCChhhhhccccccCCC--------------------------CCC------CCCCCCCCCCceecCcee
Q 030977            2 ATAAYPPPPPYYRLYKDYLQNP--------------------------NSA------PEPPPPIEGTYICFGGNY   44 (168)
Q Consensus         2 ~~S~fPpPP~fyk~yt~~~~~~--------------------------~~~------ppPp~P~~g~y~~FG~~~   44 (168)
                      ++|+|||||+|||+||.+|++.                          ..+      .||++|.+|+|++||+.|
T Consensus        10 isSlfPpPPPf~K~FT~eNl~kl~e~k~~~~~~~~~~~~~~~~~~~~~~lp~eL~~LiPP~~P~~g~yr~FG~~w   84 (84)
T 3fbi_A           10 VSSLYPPPPPYVKFFTQSNLEKLPKYKEKKAASAKQTAPNNSNGGSEEEITCALDYLIPPPMPKNQQYRAFGSIW   84 (84)
T ss_dssp             --CCSCCCCGGGGGCCHHHHHHHHHHHHHHHC---------------CCCCSGGGGGSCCCCCSSGGGSCSCCCC
T ss_pred             cccCCCCCCchhhhcCHHHHHHHHHHHHHhcccccccccccccccccCCCCHHHhccCCCCCCCCCCeeecCccC
Confidence            5799999999999999887410                          011      378888999999999987

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=93.92  E-value=0.05  Score=37.09  Aligned_cols=36  Identities=17%  Similarity=0.378  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977          123 HQARATLIHILELQIQRRKQAVEDIKRRREEAQRRL  158 (168)
Q Consensus       123 hQARetL~~~le~Ql~~rr~~~~~ir~~~~~~~~~L  158 (168)
                      -++++.+|..++.+|+++.++|..++..||+.++++
T Consensus        35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl   70 (72)
T 3nmd_A           35 LRQRDALIDELELELDQKDELIQMLQNELDKYRSVI   70 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            467889999999999999999999999999987765

>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}

Probab=91.64  E-value=0.3  Score=32.73  Aligned_cols=38  Identities=18%  Similarity=0.346  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977          124 QARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKES  161 (168)
Q Consensus       124 QARetL~~~le~Ql~~rr~~~~~ir~~~~~~~~~L~~~  161 (168)
                      ++++..+.-|+..++.+.++|++++..+++..+++...
T Consensus        21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~~~   58 (67)
T 1zxa_A           21 MLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLPVP   58 (67)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            57899999999999999999999999999999998743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	168
d1ykha1	95	a.252.1.2 (A:111-205) RNA polymerase II mediator c	4e-33

>d1ykha1 a.252.1.2 (A:111-205) RNA polymerase II mediator complex protein MED7 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 95

class: All alpha proteins
fold: Mediator hinge subcomplex-like
superfamily: Mediator hinge subcomplex-like
family: MED7 hinge region
domain: RNA polymerase II mediator complex protein MED7
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  111 bits (278), Expect = 4e-33
 Identities = 38/93 (40%), Positives = 59/93 (63%), Gaps = 1/93 (1%)

Query: 67  NIDFK-KELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQA 125
           N  +K +ELR L + L L+ LEL  VL   P  Y R+VE+I  I  N+HHLLN  RPHQ+
Sbjct: 1   NYQYKIQELRKLLKSLLLNYLELIGVLSINPDMYERKVENIRTILVNIHHLLNEYRPHQS 60

Query: 126 RATLIHILELQIQRRKQAVEDIKRRREEAQRRL 158
           R +LI +LE Q++ ++  + +I++  ++   +L
Sbjct: 61  RESLIMLLEEQLEYKRGEIREIEQVCKQVHDKL 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	168
d1ykha1	95	RNA polymerase II mediator complex protein MED7 {B	100.0

>d1ykha1 a.252.1.2 (A:111-205) RNA polymerase II mediator complex protein MED7 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Mediator hinge subcomplex-like
superfamily: Mediator hinge subcomplex-like
family: MED7 hinge region
domain: RNA polymerase II mediator complex protein MED7
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.4e-40  Score=237.89  Aligned_cols=92  Identities=40%  Similarity=0.681  Sum_probs=89.1

Q ss_pred             ccHH-HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHH
Q 030977           68 IDFK-KELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVED  146 (168)
Q Consensus        68 ~D~k-~ELkkL~~sll~~fleLl~~l~~~P~~~~~ki~~i~~l~iNmhhllNe~RPhQARetL~~~le~Ql~~rr~~~~~  146 (168)
                      +|.| .|||||++|+|+||+||+|+|+.+|+++++||+||++||+||||+||+||||||||||++||++|+++||+++++
T Consensus         2 ~~~k~~ELkkln~sll~nfleLl~~l~~~P~~~~~kvedl~~LfiN~HhllNeyRPhQAResLi~lme~Ql~~kr~~~~~   81 (95)
T d1ykha1           2 YQYKIQELRKLLKSLLLNYLELIGVLSINPDMYERKVENIRTILVNIHHLLNEYRPHQSRESLIMLLEEQLEYKRGEIRE   81 (95)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSSCCCGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhCccchHhhHHHHHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 030977          147 IKRRREEAQRRLK  159 (168)
Q Consensus       147 ir~~~~~~~~~L~  159 (168)
                      |+++|++++++|+
T Consensus        82 i~~~~~~~~~~L~   94 (95)
T d1ykha1          82 IEQVCKQVHDKLT   94 (95)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999874