Citrus Sinensis ID: 030984

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHKMPVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW
Secondary Structure (PSIPRED)
cccccccHHHHHHHHccccccccccccccccccccccccccccEEEcccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEccccccccccccHHHHHHccccccccccccEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHccccccccccccEEEEcccccccccccccHHEEEEcccHHcccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHEEEEEccccccccccccHHHHHHcccccEEccHcEEEEcccccccccccEEEEc
Coil and Loop (DISEMBL)
MAAMNSSVLACNYAisgsagsselnAKIVSvstpavhghkmpviRAQQvdvskesrgtdGRRAAMALLAVTLFTTATAaasssanagVIDEYLERSKELNDQKRLATSGANFARAYTvqfgtckfpenftgcqdlakqkkvpfisddleleckgkdkykcgsnvfwkw
Flexible Loop (DISEMBL)
MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTpavhghkmpviraqqvdvskesrgtDGRRAAMALLAVTLFTTAtaaasssanaGVIDEYLERSKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDdleleckgkdkykcgsnvfwkw
Low Complexity Region (SEG)
MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHKMPVIRAQQVDVSKESRGTDGRRaamallavtlfttataaasssanaGVIDEYLERSKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW
Disordered region (IsUnstruct)
********LACNYAI************IVSV*******************************AAMALLAVTLFTTATAAA****NAGVIDEYL***********LATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWK*
Disordered Region (DISOPRED)
*****SS*LACNYAISGSAGSSELNAKIVSVSTPAVHGHKM***********************MALLAVTLFTTATAAASSSANAGVIDEYL***************GANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW
Disordered Region (DISEMBL)
MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHKMPVIRAQQ***********GRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW
Disordered Region (DISPRO)
*****S*VLACNYAISGSAGSSELNAKIVSVSTPAVHGHKMPVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHKMPVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
P49107	171	Photosystem I reaction ce	yes	no	0.976	0.959	0.72	8e-65
O65107	112	Photosystem I reaction ce	N/A	no	0.523	0.785	0.791	8e-39
P31093	145	Photosystem I reaction ce	N/A	no	0.613	0.710	0.754	2e-38
Q9SBN5	139	Photosystem I reaction ce	N/A	no	0.446	0.539	0.551	7e-18

>sp|P49107|PSAN_ARATH Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2

 Score =  245 bits (626), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 126/175 (72%), Positives = 145/175 (82%), Gaps = 11/175 (6%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRAQQVDVSKESR 56
           MAAMNSSVL C+YAI+GS GS ELN K+  V++    G K    MPVI+AQ+V V  +  
Sbjct: 1   MAAMNSSVLTCSYAIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVD 58

Query: 57  GTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSK---ELNDQKRLATSGANFA 113
           G++GRR+AM  LA TLF+TA  A S+SANAGVIDEYLERSK   ELND+KRLATSGANFA
Sbjct: 59  GSNGRRSAMVFLAATLFSTA--AVSASANAGVIDEYLERSKTNKELNDKKRLATSGANFA 116

Query: 114 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 168
           RA+TVQFG+CKFPENFTGCQDLAKQKKVPFIS+D+ LEC+GKDKYKCGSNVFWKW
Sbjct: 117 RAFTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171

May function in mediating the binding of the antenna complexes to the PSI reaction center and core antenna. Plays an important role in docking plastocyanin to the PSI complex. Does not bind pigments.
Arabidopsis thaliana (taxid: 3702)

>sp|O65107|PSAN_MAIZE Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=3 SV=1

 Score =  159 bits (402), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 72/91 (79%), Positives = 83/91 (91%), Gaps = 3/91 (3%)

Query: 81  SSSANAGVIDEYLERSK---ELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAK 137
           + SA A + DEYLE+SK   ELND+KRLATSGANFARAYTV+FG+C+FP NFTGCQDLAK
Sbjct: 22  TGSAKATIFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAK 81

Query: 138 QKKVPFISDDLELECKGKDKYKCGSNVFWKW 168
           QKKVPFISDDLE+EC+GK+K+KCGSNVFWKW
Sbjct: 82  QKKVPFISDDLEIECEGKEKFKCGSNVFWKW 112

May function in mediating the binding of the antenna complexes to the PSI reaction center and core antenna.

Zea mays (taxid: 4577)

>sp|P31093|PSAN_HORVU Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1

 Score =  157 bits (398), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/106 (75%), Positives = 91/106 (85%), Gaps = 3/106 (2%)

Query: 66  ALLAVTLFTTATAAASSSANAGVIDEYLERSK---ELNDQKRLATSGANFARAYTVQFGT 122
           ALL +     ATAA++ SA A V DEYLE+SK   ELND+KR ATSGANFARAYTVQFG+
Sbjct: 40  ALLGLAAVFAATAASAGSARASVFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGS 99

Query: 123 CKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 168
           CKFP NFTGCQDLAKQKKVPFI+DDLE+EC+GK+K+KCGSNVFWKW
Sbjct: 100 CKFPYNFTGCQDLAKQKKVPFITDDLEIECEGKEKFKCGSNVFWKW 145

May function in mediating the binding of the antenna complexes to the PSI reaction center and core antenna.

Hordeum vulgare (taxid: 4513)

>sp|Q9SBN5|PSAN_VOLCA Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1

 Score = 89.7 bits (221), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 59/78 (75%), Gaps = 3/78 (3%)

Query: 88  VIDEYLERS---KELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFI 144
           V+++ L +S   K LN++KRLATS AN AR+ TV  GTC+FPENF GC++LA  K V +I
Sbjct: 55  VVEDLLAKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYI 114

Query: 145 SDDLELECKGKDKYKCGS 162
           ++DL++EC+GKD   CGS
Sbjct: 115 AEDLKIECEGKDAKSCGS 132

May function in mediating the binding of the antenna complexes to the PSI reaction center and core antenna.

Volvox carteri (taxid: 3067)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
224093408	172	predicted protein [Populus trichocarpa]	0.982	0.959	0.765	1e-64
118488894	172	unknown [Populus trichocarpa x Populus d	0.982	0.959	0.765	2e-64
357464531	172	Photosystem I reaction center subunit N	0.976	0.953	0.767	5e-64
15237593	171	photosystem I reaction center subunit N	0.976	0.959	0.72	4e-63
297797407	171	photosystem I reaction center subunit ps	0.976	0.959	0.72	5e-63
224080971	172	predicted protein [Populus trichocarpa]	0.982	0.959	0.754	8e-62
449461859	171	PREDICTED: photosystem I reaction center	0.982	0.964	0.724	2e-61
449507490	171	PREDICTED: photosystem I reaction center	0.982	0.964	0.724	2e-61
255571379	169	Photosystem I reaction center subunit N,	0.976	0.970	0.745	6e-61
351722715	167	uncharacterized protein LOC100499729 [Gl	0.970	0.976	0.709	2e-60

>gi|224093408|ref|XP_002309915.1| predicted protein [Populus trichocarpa] gi|222852818|gb|EEE90365.1| predicted protein [Populus trichocarpa]

 Score =  251 bits (640), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 134/175 (76%), Positives = 151/175 (86%), Gaps = 10/175 (5%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVS---VSTPAVHGHKMPVIRAQQVDV-SKESR 56
           MAAMNSSVLACNYAISG+ GSSELNAKIVS   V++  V G K+PVIRAQQ    S+E +
Sbjct: 1   MAAMNSSVLACNYAISGT-GSSELNAKIVSMPAVASLVVSGPKLPVIRAQQTRADSREMK 59

Query: 57  GTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSK---ELNDQKRLATSGANFA 113
            ++GRRAAM  LA TLFT+A AA+S++A  GVI+EYLE+SK   ELND+KRLATSGANFA
Sbjct: 60  ASEGRRAAMVYLAATLFTSAAAASSANA--GVIEEYLEKSKANKELNDKKRLATSGANFA 117

Query: 114 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 168
           RA+TVQFGTCKFPENFTGCQDLAKQKKVPFISDDL LEC+GKDKYKCGSNVFWKW
Sbjct: 118 RAFTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKYKCGSNVFWKW 172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488894|gb|ABK96256.1| unknown [Populus trichocarpa x Populus deltoides] gi|118489284|gb|ABK96447.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 134/175 (76%), Positives = 151/175 (86%), Gaps = 10/175 (5%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVS---VSTPAVHGHKMPVIRAQQVDV-SKESR 56
           MAAMNSSVLACNYAISG+ GSSELNAKIVS   V++  V G K+PVIRAQQ    S+E +
Sbjct: 1   MAAMNSSVLACNYAISGT-GSSELNAKIVSMPAVASLVVCGPKLPVIRAQQTRADSREMK 59

Query: 57  GTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSK---ELNDQKRLATSGANFA 113
            ++GRRAAM  LA TLFT+A AA+S++A  GVI+EYLE+SK   ELND+KRLATSGANFA
Sbjct: 60  ASEGRRAAMVYLAATLFTSAAAASSANA--GVIEEYLEKSKANKELNDKKRLATSGANFA 117

Query: 114 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 168
           RA+TVQFGTCKFPENFTGCQDLAKQKKVPFISDDL LEC+GKDKYKCGSNVFWKW
Sbjct: 118 RAFTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKYKCGSNVFWKW 172

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464531|ref|XP_003602547.1| Photosystem I reaction center subunit N [Medicago truncatula] gi|355491595|gb|AES72798.1| Photosystem I reaction center subunit N [Medicago truncatula] gi|388492560|gb|AFK34346.1| unknown [Medicago truncatula]

 Score =  248 bits (634), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 135/176 (76%), Positives = 156/176 (88%), Gaps = 12/176 (6%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVSV---STPAVHGHKMPVIRAQQVDV--SKES 55
           MAAMNSSVLAC+YAISGS    ELNAK++SV   ++P V G K+P+I+AQQV +  +KES
Sbjct: 1   MAAMNSSVLACSYAISGS----ELNAKLISVPSAASPGVSGIKLPLIKAQQVRIPEAKES 56

Query: 56  RGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSK---ELNDQKRLATSGANF 112
           R +DGRR A+ALLA TLFTTA +A++SSANAGVI+EYLE+SK   ELND+KRLATSGANF
Sbjct: 57  RASDGRRNALALLAATLFTTAVSASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANF 116

Query: 113 ARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 168
           ARAYTVQFGTCKFPENFTGCQDLAKQKKVPFI++DLELEC+GKDKYKCGSNVFWKW
Sbjct: 117 ARAYTVQFGTCKFPENFTGCQDLAKQKKVPFITEDLELECEGKDKYKCGSNVFWKW 172

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237593|ref|NP_201209.1| photosystem I reaction center subunit N [Arabidopsis thaliana] gi|1709825|sp|P49107.2|PSAN_ARATH RecName: Full=Photosystem I reaction center subunit N, chloroplastic; Short=PSI-N; Flags: Precursor gi|1237124|gb|AAA93075.1| PSI-N [Arabidopsis thaliana] gi|10176952|dbj|BAB10272.1| photosystem I reaction centre subunit psaN precursor [Arabidopsis thaliana] gi|17065518|gb|AAL32913.1| photosystem I reaction centre subunit psaN precursor [Arabidopsis thaliana] gi|20148531|gb|AAM10156.1| photosystem I reaction center subunit psaN precursor [Arabidopsis thaliana] gi|332010449|gb|AED97832.1| photosystem I reaction center subunit N [Arabidopsis thaliana]

 Score =  245 bits (626), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 126/175 (72%), Positives = 145/175 (82%), Gaps = 11/175 (6%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRAQQVDVSKESR 56
           MAAMNSSVL C+YAI+GS GS ELN K+  V++    G K    MPVI+AQ+V V  +  
Sbjct: 1   MAAMNSSVLTCSYAIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVD 58

Query: 57  GTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSK---ELNDQKRLATSGANFA 113
           G++GRR+AM  LA TLF+TA  A S+SANAGVIDEYLERSK   ELND+KRLATSGANFA
Sbjct: 59  GSNGRRSAMVFLAATLFSTA--AVSASANAGVIDEYLERSKTNKELNDKKRLATSGANFA 116

Query: 114 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 168
           RA+TVQFG+CKFPENFTGCQDLAKQKKVPFIS+D+ LEC+GKDKYKCGSNVFWKW
Sbjct: 117 RAFTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797407|ref|XP_002866588.1| photosystem I reaction center subunit psi-N [Arabidopsis lyrata subsp. lyrata] gi|297312423|gb|EFH42847.1| photosystem I reaction center subunit psi-N [Arabidopsis lyrata subsp. lyrata]

 Score =  245 bits (625), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 126/175 (72%), Positives = 145/175 (82%), Gaps = 11/175 (6%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRAQQVDVSKESR 56
           MAAMNSSVL C+YAI+GS GS ELN K+  V++    G K    MPVI+AQ+V V  +  
Sbjct: 1   MAAMNSSVLTCSYAIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVD 58

Query: 57  GTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSK---ELNDQKRLATSGANFA 113
           G++GRR+AM  LA TLF+TA  A S+SANAGVIDEYLERSK   ELND+KRLATSGANFA
Sbjct: 59  GSNGRRSAMVFLAATLFSTA--AVSASANAGVIDEYLERSKANKELNDKKRLATSGANFA 116

Query: 114 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 168
           RA+TVQFG+CKFPENFTGCQDLAKQKKVPFIS+DL LEC+GKDKY+CGSNVFWKW
Sbjct: 117 RAFTVQFGSCKFPENFTGCQDLAKQKKVPFISEDLALECEGKDKYQCGSNVFWKW 171

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080971|ref|XP_002306249.1| predicted protein [Populus trichocarpa] gi|118486634|gb|ABK95154.1| unknown [Populus trichocarpa] gi|222855698|gb|EEE93245.1| predicted protein [Populus trichocarpa]

 Score =  241 bits (615), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 132/175 (75%), Positives = 150/175 (85%), Gaps = 10/175 (5%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVS---VSTPAVHGHKMPVIRAQQVDV-SKESR 56
           MAAMNSSVLACNYAISG+ GSSELNAKIVS   V++P V G K+P+IRAQQ    SKE +
Sbjct: 1   MAAMNSSVLACNYAISGT-GSSELNAKIVSMPAVASPVVSGPKLPIIRAQQARADSKEMK 59

Query: 57  GTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSK---ELNDQKRLATSGANFA 113
            ++GRRAA+  LA T     +AAA++SANAGVI++YLE+SK   ELND+KRLATSGANFA
Sbjct: 60  ASEGRRAALVYLAAT--LFTSAAAAASANAGVIEDYLEKSKANKELNDKKRLATSGANFA 117

Query: 114 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 168
           RAYTVQFGTCKFPENFTGCQDLAKQKKVPFIS+DL LEC+GKDKYKCGSNVFWKW
Sbjct: 118 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFISEDLALECEGKDKYKCGSNVFWKW 172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461859|ref|XP_004148659.1| PREDICTED: photosystem I reaction center subunit N, chloroplastic-like [Cucumis sativus]

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 126/174 (72%), Positives = 146/174 (83%), Gaps = 9/174 (5%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIV---SVSTPAVHGHKMPVIRAQQVDVSKESRG 57
           MA MNSSVLACNYAISG AGS++LN+K+    SV++P V G+K+P IRAQQ  V +    
Sbjct: 1   MATMNSSVLACNYAISG-AGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAK-- 57

Query: 58  TDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSK---ELNDQKRLATSGANFAR 114
            DGRR A+  L  +LF  A AA++SSANAGVI++YLE+SK   ELND+KRLATSGANFAR
Sbjct: 58  NDGRRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFAR 117

Query: 115 AYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 168
           AYTV+FGTCKFPENFTGCQDLAKQKKVPFI+DDLELEC+GKDKYKCGSNVFWKW
Sbjct: 118 AYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507490|ref|XP_004163047.1| PREDICTED: photosystem I reaction center subunit N, chloroplastic-like [Cucumis sativus]

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 126/174 (72%), Positives = 146/174 (83%), Gaps = 9/174 (5%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIV---SVSTPAVHGHKMPVIRAQQVDVSKESRG 57
           MA MNSSVLACNYAISG AGS++LN+K+    SV++P V G+K+P IRAQQ  V +    
Sbjct: 1   MATMNSSVLACNYAISG-AGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQAKVPEAK-- 57

Query: 58  TDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSK---ELNDQKRLATSGANFAR 114
            DGRR A+  L  +LF  A AA++SSANAGVI++YLE+SK   ELND+KRLATSGANFAR
Sbjct: 58  NDGRRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFAR 117

Query: 115 AYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 168
           AYTV+FGTCKFPENFTGCQDLAKQKKVPFI+DDLELEC+GKDKYKCGSNVFWKW
Sbjct: 118 AYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571379|ref|XP_002526638.1| Photosystem I reaction center subunit N, chloroplast precursor, putative [Ricinus communis] gi|223534030|gb|EEF35750.1| Photosystem I reaction center subunit N, chloroplast precursor, putative [Ricinus communis]

 Score =  238 bits (607), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 129/173 (74%), Positives = 142/173 (82%), Gaps = 9/173 (5%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELN--AKIVSVSTPAVHGHKMPVIRAQQVDVSKESRGT 58
           MAAMNSSVLACNYAISG+A SSEL+  A + S   P V G K+PVIRAQ+   + +S+  
Sbjct: 1   MAAMNSSVLACNYAISGTA-SSELSKLASVPSAVFPTVSGPKLPVIRAQRAKPASDSKA- 58

Query: 59  DGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSK---ELNDQKRLATSGANFARA 115
           DGRRAAM  L +      TAAA SSANAGVI+EYLE+SK   ELND+KRLATSGANFARA
Sbjct: 59  DGRRAAM--LCLAATLFTTAAAVSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARA 116

Query: 116 YTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 168
           YTVQFGTCKFPENFTGCQDLAKQKKVPFISDDL LEC+GKDKYKCGSNVFWKW
Sbjct: 117 YTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKYKCGSNVFWKW 169

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722715|ref|NP_001235206.1| uncharacterized protein LOC100499729 [Glycine max] gi|255626111|gb|ACU13400.1| unknown [Glycine max]

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 122/172 (70%), Positives = 148/172 (86%), Gaps = 9/172 (5%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHKMPVIRAQ-QVDVSKESRGTD 59
           MAAMNSSVLAC+YAISG+A  SELN K+ SV+  A  G+K+P+I+A+ +V  +KES G  
Sbjct: 1   MAAMNSSVLACSYAISGAA-CSELNGKVTSVAYVACSGYKLPLIKAEARVPKAKESEG-- 57

Query: 60  GRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSK---ELNDQKRLATSGANFARAY 116
           GRR A+ LLA TLFT+A + +S++A  G+I++YLERSK   ELND+KRLAT+GANFARAY
Sbjct: 58  GRRGALVLLAATLFTSAASNSSANA--GIIEDYLERSKANKELNDKKRLATTGANFARAY 115

Query: 117 TVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 168
           TV+FG+CKFPENFTGCQDLAKQKKVPF+SDDLELEC+GKDKYKCGSNVFWKW
Sbjct: 116 TVEFGSCKFPENFTGCQDLAKQKKVPFLSDDLELECEGKDKYKCGSNVFWKW 167

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
TAIR|locus:2164371	181	PSAN [Arabidopsis thaliana (ta	0.803	0.745	0.589	1.1e-34

TAIR|locus:2164371 PSAN [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 86/146 (58%), Positives = 99/146 (67%)

Query:     1 MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRAQQVDVSKESR 56
             MAAMNSSVL C+YAI+GS GS ELN K+  V++    G K    MPVI+AQ+V V  +  
Sbjct:     1 MAAMNSSVLTCSYAIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVD 58

Query:    57 GTDGRRXXXXXXXXXXXXXXXXXXXXXXXXGVIDEYLERSK---ELNDQKRLATSGANFA 113
             G++GRR                        GVIDEYLERSK   ELND+KRLATSGANFA
Sbjct:    59 GSNGRRSAMVFLAATLFSTAAVSASANA--GVIDEYLERSKTNKELNDKKRLATSGANFA 116

Query:   114 RAYTVQFGTCKFPENFTGCQDLAKQK 139
             RA+TVQFG+CKFPENFTGCQDLAKQK
Sbjct:   117 RAFTVQFGSCKFPENFTGCQDLAKQK 142


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.130   0.385    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      168       144   0.00091  102 3  11 22  0.48    31
                                                     30  0.48    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  138 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.87u 0.14s 12.01t   Elapsed:  00:00:00
  Total cpu time:  11.87u 0.14s 12.01t   Elapsed:  00:00:00
  Start:  Fri May 10 06:47:06 2013   End:  Fri May 10 06:47:06 2013

GO:0005516 "calmodulin binding" evidence=IEA;TAS;IPI

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009522 "photosystem I" evidence=IEA;TAS

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA;TAS

GO:0015979 "photosynthesis" evidence=IEA

GO:0042651 "thylakoid membrane" evidence=IEA

GO:0030093 "chloroplast photosystem I" evidence=IPI

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P31093	PSAN_HORVU	No assigned EC number	0.7547	0.6130	0.7103	N/A	no
P49107	PSAN_ARATH	No assigned EC number	0.72	0.9761	0.9590	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_VII0139 photosystem I reaction center subunit N PsaN (172 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	168
PLN00054	139	PLN00054, PLN00054, photosystem I reaction center	9e-69
pfam05479	138	pfam05479, PsaN, Photosystem I reaction centre sub	6e-61

>gnl|CDD|215042 PLN00054, PLN00054, photosystem I reaction center subunit N; Provisional

 Score =  204 bits (521), Expect = 9e-69
 Identities = 97/140 (69%), Positives = 109/140 (77%), Gaps = 7/140 (5%)

Query: 34  PAVHGHKMPVIRAQQV--DVSKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDE 91
            AV   KMPVI+AQ+V          +DGRRAA+  LA TLF+TA AAAS  ANAGVI +
Sbjct: 1   GAVSQMKMPVIKAQRVVRATGAVVDASDGRRAALVGLAATLFSTAAAAAS--ANAGVISD 58

Query: 92  YLERS---KELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDL 148
            L +S   KELND+KRLATSGANFAR+ TVQ GTCKFPENFTGC+DLAKQKKVPFIS+DL
Sbjct: 59  LLAKSKANKELNDKKRLATSGANFARSRTVQDGTCKFPENFTGCEDLAKQKKVPFISEDL 118

Query: 149 ELECKGKDKYKCGSNVFWKW 168
            LEC+GKDK KCGS VFWKW
Sbjct: 119 ALECEGKDKKKCGSKVFWKW 138

Length = 139

>gnl|CDD|114215 pfam05479, PsaN, Photosystem I reaction centre subunit N (PSAN or PSI-N)

 Score =  184 bits (469), Expect = 6e-61
 Identities = 87/132 (65%), Positives = 104/132 (78%), Gaps = 6/132 (4%)

Query: 40  KMPVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERS--- 96
           K+   R  +   +   R +  RR+A+  LA  L   +TAA + SANAGV+DEYLE+S   
Sbjct: 10  KVQAARPARA-TTVVVRASAQRRSALLGLAALLG--STAALAPSANAGVVDEYLEKSKAN 66

Query: 97  KELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKD 156
           KELND+KRLATSGANFARA TVQFG+CKFPENFTGCQDLAKQKKVPFI++DL++EC+GKD
Sbjct: 67  KELNDKKRLATSGANFARARTVQFGSCKFPENFTGCQDLAKQKKVPFIAEDLKIECEGKD 126

Query: 157 KYKCGSNVFWKW 168
           K KCGSNVFWKW
Sbjct: 127 KKKCGSNVFWKW 138

This family contains several Photosystem I reaction centre subunit N (PSI-N) proteins. The protein has no known function although it is localised in the thylakoid lumen. PSI-N is a small extrinsic subunit at the lumen side and is very likely involved in the docking of plastocyanin. Length = 138

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
PLN00054	139	photosystem I reaction center subunit N; Provision	100.0
PF05479	138	PsaN: Photosystem I reaction centre subunit N (PSA	100.0
PLN00078	122	photosystem I reaction center subunit N (PsaN); Pr	92.37

>PLN00054 photosystem I reaction center subunit N; Provisional

Probab=100.00  E-value=3.6e-72  Score=440.59  Aligned_cols=133  Identities=72%  Similarity=1.080  Sum_probs=127.9

Q ss_pred             CccccCCccceeeeeccc--cccccCcchhHHHHHHHHHHHHHHhhhhccccccccchHHHHHHh---hhhhhhhhhhcc
Q 030984           34 PAVHGHKMPVIRAQQVDV--SKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERS---KELNDQKRLATS  108 (168)
Q Consensus        34 p~~~~~klPvira~~~~~--~~~~~~~~grraAl~~laa~l~~ta~~a~a~sAnAgv~~d~l~kS---KeLNDKKRlATS  108 (168)
                      +.+++.++|+|++|++..  +..+++++|||+||++|||+||+++  +++++||||||+||||||   ||||||||||||
T Consensus         1 ~~~s~~~~~~ika~r~~~A~~~~~~~~~grraa~~~Laa~l~~~a--a~~~~AnAgv~~d~L~kS~aNKeLNDKKRlATS   78 (139)
T PLN00054          1 GAVSQMKMPVIKAQRVVRATGAVVDASDGRRAALVGLAATLFSTA--AAAASANAGVISDLLAKSKANKELNDKKRLATS   78 (139)
T ss_pred             CccccccccccccccccccccchhccccchHHHHHHHHHHHHHHH--hcccccchhHHHHHHHHhhhhhhhhhHHhhhhc
Confidence            356788999999999884  7778899999999999999999988  899999999999999999   999999999999


Q ss_pred             ccccceeeeeeeccccCCCCccchhhhhhcCCCcccccCcceeecccccccccCcceecC
Q 030984          109 GANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW  168 (168)
Q Consensus       109 ~ANfaRa~TV~~GtCkFP~Nf~GCqdlAk~k~V~FlsdDl~lECeGkdk~kCgSnvfwkw  168 (168)
                      ||||+|+||||||+|+||||||||||||+||+||||||||+|||||+|+|+||||+||||
T Consensus        79 ~ANfaRa~TV~~G~C~FP~Nf~GCqdlA~~k~V~flsdDl~iECEGkd~~~CgS~~~~~~  138 (139)
T PLN00054         79 GANFARSRTVQDGTCKFPENFTGCEDLAKQKKVPFISEDLALECEGKDKKKCGSKVFWKW  138 (139)
T ss_pred             chhhhhheeeecccccCCcccccHHHHHhcCCCCccccccceeecCCccceecccccccC
Confidence            999999999999999999999999999999999999999999999999999999999999

>PF05479 PsaN: Photosystem I reaction centre subunit N (PSAN or PSI-N); InterPro: IPR008796 This family contains several Photosystem I reaction centre subunit N (PSI-N) proteins

Probab=100.00  E-value=2.4e-70  Score=429.85  Aligned_cols=128  Identities=73%  Similarity=1.146  Sum_probs=65.9

Q ss_pred             cCCccceeeeeccccccccCcchhHHHHHHHHHHHHHHhhhhccccccccchHHHHHHh---hhhhhhhhhhccccccce
Q 030984           38 GHKMPVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERS---KELNDQKRLATSGANFAR  114 (168)
Q Consensus        38 ~~klPvira~~~~~~~~~~~~~grraAl~~laa~l~~ta~~a~a~sAnAgv~~d~l~kS---KeLNDKKRlATS~ANfaR  114 (168)
                      ..++|+|++++.. ....+++++||+++++|+++|++||  +++++||||||+|||+||   |||||||||+||||||+|
T Consensus         8 sa~~qai~~~ka~-~~~~~~~~~~Raall~Laa~l~~tA--a~a~~A~A~l~~dyL~KSkaNKelNDKkRlaTs~aNfaR   84 (138)
T PF05479_consen    8 SAKVQAIRAAKAK-RVVVRASDGRRAALLGLAAVLAATA--ASASSARAGLLEDYLEKSKANKELNDKKRLATSYANFAR   84 (138)
T ss_dssp             ---------------------------------------------------SSSSS-SSHSSSSSTTTSS-TSSSSSSTS
T ss_pred             hcccchhhhccCC-CcccccCccchHHHHHHHHHHHHHh--hcCcchhhHHHHHHHHHhHhhhhhhhHHHhhhhhhhhhh
Confidence            3488999999777 4466778999999999999999887  778999999999999999   999999999999999999


Q ss_pred             eeeeeeccccCCCCccchhhhhhcCCCcccccCcceeecccccccccCcceecC
Q 030984          115 AYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW  168 (168)
Q Consensus       115 a~TV~~GtCkFP~Nf~GCqdlAk~k~V~FlsdDl~lECeGkdk~kCgSnvfwkw  168 (168)
                      +|||+||+|+||+|||||||||+||+||||||||+|||||||+|||||||||||
T Consensus        85 ~~tv~fg~c~fP~n~~gc~~la~~~~v~f~sdd~~lecegkd~~kc~s~~~~k~  138 (138)
T PF05479_consen   85 AYTVQFGTCKFPENFTGCQDLAKQKKVPFLSDDLKLECEGKDKYKCGSNVFWKW  138 (138)
T ss_dssp             GTT--TSTSSSSS-SSSSSSS-STT-TTSS--SSSSS-TTTSSS-SSSS-SS--
T ss_pred             heeeecccccCCccchhhHHHHHcCCCceecccceeeecCccccccccceeecC
Confidence            999999999999999999999999999999999999999999999999999999

The protein has no known function although it is localised in the thylakoid lumen []. PSI-N is a small extrinsic subunit at the lumen side and is very likely involved in the docking of plastocyanin.; GO: 0005516 calmodulin binding, 0015979 photosynthesis, 0009522 photosystem I, 0042651 thylakoid membrane; PDB: 2WSE_N 2WSC_N 2WSF_N 2O01_N.

>PLN00078 photosystem I reaction center subunit N (PsaN); Provisional

Probab=92.37  E-value=0.11  Score=41.32  Aligned_cols=50  Identities=36%  Similarity=0.542  Sum_probs=33.7

Q ss_pred             cccCcchhHHHHHHHHHHHHHHhhh-hccccccccchHHHHHHh---hhhhhhhhhhc
Q 030984           54 ESRGTDGRRAAMALLAVTLFTTATA-AASSSANAGVIDEYLERS---KELNDQKRLAT  107 (168)
Q Consensus        54 ~~~~~~grraAl~~laa~l~~ta~~-a~a~sAnAgv~~d~l~kS---KeLNDKKRlAT  107 (168)
                      ..++.-.||-.|..|..    ||+. -.++..+-.+|+.||.||   |+-|||.||=.
T Consensus        29 a~rng~srr~llt~l~s----taaip~~~~~Sr~~liq~llkkSeeNKakndkERLDd   82 (122)
T PLN00078         29 AQRNGISRRCLLTFLTS----TAAIPEAGSESRKALLQEYLKKSEENKEKNDKERLDD   82 (122)
T ss_pred             HHhcchhHHHHHHHHHh----hccCCCCcCchHHHHHHHHHHHhHHhHHHhHHHHHHH
Confidence            33555678876655433    2211 134455668999999999   99999999953

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	168
2wsc_N	170	Improved Model Of Plant Photosystem I Length = 170		1e-54
2o01_N	85	The Structure Of A Plant Photosystem I Supercomplex		9e-40

>pdb|2WSC|N Chain N, Improved Model Of Plant Photosystem I Length = 170

Iteration: 1
 Score =  208 bits (529), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 106/174 (60%), Positives = 127/174 (72%), Gaps = 10/174 (5%)
Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVS---VSTPAVHGHKMPVIRAQQVDVSKESRG 57
           M+AMNS+VLACNYA SG    S+LNAK+ S   V++P +   K+P+I+A Q  V+ ES+ 
Sbjct: 1   MSAMNSTVLACNYARSGC---SDLNAKLTSMPSVASPQLSALKLPLIKAHQAKVT-ESKS 56
Query: 58  TDGRRXXXXXXXXXXXXXXXXXXXXXXXXGVIDEYLERSK---ELNDQKRLATSGANFAR 114
             GRR                        GVI+EYLE+SK   ELND+KRLAT+GANFAR
Sbjct: 57  DQGRRSALVYLAATLFTAAAAASNSSANAGVIEEYLEKSKTNKELNDKKRLATTGANFAR 116
Query: 115 AYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 168
           AYTV+FG+CKFPENFTGCQDLAKQKKVPF+SDDL+LEC+GKDKYKCGSNVFWKW
Sbjct: 117 AYTVEFGSCKFPENFTGCQDLAKQKKVPFLSDDLDLECEGKDKYKCGSNVFWKW 170

>pdb|2O01|N Chain N, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 85

Iteration: 1
 Score =  159 bits (401), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 73/85 (85%), Positives = 82/85 (96%), Gaps = 3/85 (3%)
Query: 87  GVIDEYLERSK---ELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPF 143
           GVI+EYLE+SK   ELND+KRLAT+GANFARAYTV+FG+CKFPENFTGCQDLAKQKKVPF
Sbjct: 1   GVIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGSCKFPENFTGCQDLAKQKKVPF 60
Query: 144 ISDDLELECKGKDKYKCGSNVFWKW 168
           +SDDL+LEC+GKDKYKCGSNVFWKW
Sbjct: 61  LSDDLDLECEGKDKYKCGSNVFWKW 85
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	168
2wsc_N	170	PSAN, PSI-N, photosystem I-N subunit; photosynthes	3e-65
3lw5_N	85	Photosystem I-N subunit, photosystem I reaction ce	4e-48

>2wsc_N PSAN, PSI-N, photosystem I-N subunit; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Phaseolus vulgaris} PDB: 2wse_N* 2wsf_N* Length = 170

 Score =  196 bits (498), Expect = 3e-65
 Identities = 118/174 (67%), Positives = 143/174 (82%), Gaps = 10/174 (5%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVSVST---PAVHGHKMPVIRAQQVDVSKESRG 57
           M+AMNS+VLACNYA SG    S+LNAK+ S+ +   P +   K+P+I+A Q  V++    
Sbjct: 1   MSAMNSTVLACNYARSGC---SDLNAKLTSMPSVASPQLSALKLPLIKAHQAKVTESKSD 57

Query: 58  TDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERS---KELNDQKRLATSGANFAR 114
             GRR+A+  LA TLFT A AA++SSANAGVI+EYLE+S   KELND+KRLAT+GANFAR
Sbjct: 58  -QGRRSALVYLAATLFTAAAAASNSSANAGVIEEYLEKSKTNKELNDKKRLATTGANFAR 116

Query: 115 AYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 168
           AYTV+FG+CKFPENFTGCQDLAKQKKVPF+SDDL+LEC+GKDKYKCGSNVFWKW
Sbjct: 117 AYTVEFGSCKFPENFTGCQDLAKQKKVPFLSDDLDLECEGKDKYKCGSNVFWKW 170

>3lw5_N Photosystem I-N subunit, photosystem I reaction center subunit IX; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CL1 PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_N* Length = 85

 Score =  149 bits (378), Expect = 4e-48
 Identities = 73/85 (85%), Positives = 82/85 (96%), Gaps = 3/85 (3%)

Query: 87  GVIDEYLERS---KELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPF 143
           GVI+EYLE+S   KELND+KRLAT+GANFARAYTV+FG+CKFPENFTGCQDLAKQKKVPF
Sbjct: 1   GVIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGSCKFPENFTGCQDLAKQKKVPF 60

Query: 144 ISDDLELECKGKDKYKCGSNVFWKW 168
           +SDDL+LEC+GKDKYKCGSNVFWKW
Sbjct: 61  LSDDLDLECEGKDKYKCGSNVFWKW 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
2wsc_N	170	PSAN, PSI-N, photosystem I-N subunit; photosynthes	100.0
3lw5_N	85	Photosystem I-N subunit, photosystem I reaction ce	100.0

>2wsc_N PSAN, PSI-N, photosystem I-N subunit; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Phaseolus vulgaris} PDB: 2wse_N* 2wsf_N*

Probab=100.00  E-value=3.5e-93  Score=571.13  Aligned_cols=164  Identities=73%  Similarity=1.201  Sum_probs=81.9

Q ss_pred             CccccccceecceeeccCCCCcccccceeeccC---CccccCCccceeeeeccccccccCcchhHHHHHHHHHHHHHHhh
Q 030984            1 MAAMNSSVLACNYAISGSAGSSELNAKIVSVST---PAVHGHKMPVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTAT   77 (168)
Q Consensus         1 maamnssvlac~yaisg~~g~sel~~k~~s~~s---p~~~~~klPvira~~~~~~~~~~~~~grraAl~~laa~l~~ta~   77 (168)
                      ||+||||||+|||||||   ++|||+|++||||   |.++|+|||+||+||+.+. +....+|||+|+++|||+|+++++
T Consensus         1 ma~mnssvlac~yaisg---~sel~~k~~s~~s~~~~~~~~~klp~~ka~~~~~~-~~~~~~~rRaAl~~LaA~l~~~aa   76 (170)
T 2wsc_N            1 MSAMNSTVLACNYARSG---CSDLNAKLTSMPSVASPQLSALKLPLIKAHQAKVT-ESKSDQGRRSALVYLAATLFTAAA   76 (170)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcccccchhhhhhhhcC---chhhhhhhccCcccccccccccccCcceeeeeecc-cccccchhHHHHHHHHHHHHHHhh
Confidence            99999999999999999   7999999999999   8899999999999997744 445568999999999999999997


Q ss_pred             hhccccccccchHHHHHHh---hhhhhhhhhhccccccceeeeeeeccccCCCCccchhhhhhcCCCcccccCcceeecc
Q 030984           78 AAASSSANAGVIDEYLERS---KELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKG  154 (168)
Q Consensus        78 ~a~a~sAnAgv~~d~l~kS---KeLNDKKRlATS~ANfaRa~TV~~GtCkFP~Nf~GCqdlAk~k~V~FlsdDl~lECeG  154 (168)
                      ++++++|||||||||||||   ||||||||||||+|||+|+||||||+||||||||||||||+||+||||||||+|||||
T Consensus        77 ~~~~~sA~Agv~~d~L~kS~aNKeLNDKKRlATS~ANfaRa~TV~~GtCkFP~Nf~GCqdlAk~k~V~FlsdDl~lECEG  156 (170)
T 2wsc_N           77 AASNSSANAGVIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGSCKFPENFTGCQDLAKQKKVPFLSDDLDLECEG  156 (170)
T ss_dssp             ---------CCCCSCSCSSCSCSSSCCCSSCCSSSSSSCSCTTCCCSCSSCCSCCSCSSSCCCTTCTTSSCCSCCCSCTT
T ss_pred             cccccccccchHHHHHHHhhhhhhhhhhHhhhhcccchhheeeeecccccCCccccchHHHHhcCCCceecccceeeecc
Confidence            7899999999999999999   9999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCcceecC
Q 030984          155 KDKYKCGSNVFWKW  168 (168)
Q Consensus       155 kdk~kCgSnvfwkw  168 (168)
                      ||+|||||||||||
T Consensus       157 kd~~kCgSnvfwkw  170 (170)
T 2wsc_N          157 KDKYKCGSNVFWKW  170 (170)
T ss_dssp             CCCCCSSCSCCCCC
T ss_pred             ccCccccccceecC
Confidence            99999999999999

>3lw5_N Photosystem I-N subunit, photosystem I reaction center subunit IX; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_N*

Probab=100.00  E-value=7.8e-61  Score=351.50  Aligned_cols=82  Identities=89%  Similarity=1.559  Sum_probs=81.4

Q ss_pred             cchHHHHHHh---hhhhhhhhhhccccccceeeeeeeccccCCCCccchhhhhhcCCCcccccCcceeecccccccccCc
Q 030984           87 GVIDEYLERS---KELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSN  163 (168)
Q Consensus        87 gv~~d~l~kS---KeLNDKKRlATS~ANfaRa~TV~~GtCkFP~Nf~GCqdlAk~k~V~FlsdDl~lECeGkdk~kCgSn  163 (168)
                      |||||||+||   ||||||||||||+|||||+|||+||+|+||+|||||||+|++++||||||||+|||||||+||||||
T Consensus         1 gv~~dllaks~aNKeLnDkKRlaTS~ANfaRs~TV~~G~C~FP~Nf~GCq~~a~~~~V~FlsdD~~lECeGkd~~kcgsn   80 (85)
T 3lw5_N            1 GVIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGSCKFPENFTGCQDLAKQKKVPFLSDDLDLECEGKDKYKCGSN   80 (85)
T ss_dssp             CCCCSCSCSSCCCSTTCCCSSCCSSSSSSTTTSSCCCSCSSCCSCCSCSSSCCCTTBTTBSCCSCCCSCCSCCCCCSSTT
T ss_pred             CcHHHHHHHhhhhhhhhhHHHhhhcccchhheeEeecccccCCccccchHHHHhcCCCceecccceeeecCccccccccc
Confidence            7999999999   9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceecC
Q 030984          164 VFWKW  168 (168)
Q Consensus       164 vfwkw  168 (168)
                      |||||
T Consensus        81 vfwkw   85 (85)
T 3lw5_N           81 VFWKW   85 (85)
T ss_dssp             TCCCC
T ss_pred             ceecC
Confidence            99999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00