Citrus Sinensis ID: 031006

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
Protein Sequence
MLLALALAFLSISGDDDDMGIIKRGRFISSSSDGGSFPFLHGPHRKLLLRSAKTKAAKKKEPERWGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSSVVC
Secondary Structure (PSIPRED)
cHHHHHHHHHHHccccccccccccccEEEEccccccccEEccccHHHHHHHHHHHHHccccccccccccccccEEEEEcccccccccccEEEEEEEcccccccccEEEEEEcccccccEEEccccEEEEccccEEEccccccccccEEEEEEEcccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHccccccccEEEEcccEEEEccccccEEEcccccHHHHccccHHHHcccccccHcccccccccEEEEEcccccccccccEEEEEEEEccccccccccEEEEcccccccEEccHHHHHEcccccEEEccccccccccEEEEEEcccccccccccEEEc
Coil and Loop (DISEMBL)
MLLALALAFLSisgddddmgiikrgrfissssdggsfpflhgphrkLLLRSAKTKAakkkeperwgerctkedivitqgptgimpngiptYTVEIMNACEtgcniseihlncgwfssaHLINHKILkrlsyndclvnegkplvsggtlkfqyantflypltvssvvc
Flexible Loop (DISEMBL)
MLLALALAFLSisgddddmgIIKRGRFISSSSDGGSFPFLHGPHRKLLLRSAKtkaakkkeperwgerctkedivitqgptgimpnGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSSVVC
Low Complexity Region (SEG)
MllalalaflSISGddddMGIIKRGRFISSSSDGGSFPFLHGPHRklllrsaktkaakkkEPERWGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSSVVC
Disordered region (IsUnstruct)
*****************************************************************GERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSS***
Disordered Region (DISOPRED)
*LLALALAFLSISGDDDDMGIIKRGRF****************HRKLLLRSAKTKA****************DIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSSVVC
Disordered Region (DISEMBL)
MLLALALAFLSISGDDDDMGIIKRGRFISSSSDGGSFPFLHGPHRKLLLRSA**************ERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSSVVC
Disordered Region (DISPRO)
MLLALALAFLSISGDDDDMGIIKRGRFISSSSDGGSFPFLHGPHRKLLLRSAKTKAAKKKEPERWGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSSVVC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLLALALAFLSISGDDDDMGIIKRGRFISSSSDGGSFPFLHGPHRKLLLRSAKTKAAKKKEPERWGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSSVVC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	167	2.2.26 [Sep-21-2011]
A8MS78	127	Uncharacterized protein A	no	no	0.407	0.535	0.375	0.0002

>sp|A8MS78|Y1583_ARATH Uncharacterized protein At1g05835 OS=Arabidopsis thaliana GN=At1g05835 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 91  YTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYN--DCLVNEGKPLVSGGTL 148
           + VE+MN C   C I  + L C  F  + L++   L+ LS +  +C+VN+G PL    TL
Sbjct: 48  FRVEVMNKCPM-CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 105

Query: 149 KFQYANTFLYPL 160
            F Y+NT  + L
Sbjct: 106 SFNYSNTHQFAL 117

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
449454951	182	PREDICTED: uncharacterized protein LOC10	0.730	0.670	0.685	3e-45
356508837	186	PREDICTED: uncharacterized protein LOC10	0.754	0.677	0.653	2e-44
356518864	178	PREDICTED: uncharacterized protein LOC10	0.724	0.679	0.672	2e-44
225456402	168	PREDICTED: uncharacterized protein LOC10	0.724	0.720	0.682	1e-43
224119750	178	predicted protein [Populus trichocarpa]	0.856	0.803	0.571	1e-43
357465003	350	Transcription activator BRG1 [Medicago t	0.748	0.357	0.618	8e-41
224134064	112	predicted protein [Populus trichocarpa]	0.646	0.964	0.712	2e-40
42573031	176	tapetum determinant 1 [Arabidopsis thali	0.742	0.704	0.6	6e-36
297803622	183	hypothetical protein ARALYDRAFT_914087 [	0.742	0.677	0.582	3e-35
449434404	164	PREDICTED: uncharacterized protein LOC10	0.646	0.658	0.611	6e-34

>gi|449454951|ref|XP_004145217.1| PREDICTED: uncharacterized protein LOC101219731 [Cucumis sativus] gi|449472127|ref|XP_004153503.1| PREDICTED: uncharacterized protein LOC101213400 [Cucumis sativus] gi|449519928|ref|XP_004166986.1| PREDICTED: uncharacterized LOC101213400 [Cucumis sativus]

 Score =  186 bits (471), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 87/127 (68%), Positives = 100/127 (78%), Gaps = 5/127 (3%)

Query: 42  GPHRKLLLRSAKTKAAKKKEPER-WGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACE 100
            PHRKLLL    T+ A  +EP R WGE+CTK DIVI QGPT  +P GIPTYTVE++NAC 
Sbjct: 59  APHRKLLL----TREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACV 114

Query: 101 TGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPL 160
           TGC I  IH  CGWFSSAHLIN ++ KRL Y+DCLVN+GKPLV GGTL FQYANT+ YPL
Sbjct: 115 TGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPL 174

Query: 161 TVSSVVC 167
           +VSSV+C
Sbjct: 175 SVSSVLC 181

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508837|ref|XP_003523160.1| PREDICTED: uncharacterized protein LOC100790055 [Glycine max]

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/130 (65%), Positives = 101/130 (77%), Gaps = 4/130 (3%)

Query: 39  FLHGPHRKLLLRSAKTKAAKKKEPER-WGERCTKEDIVITQGPTGIMPNGIPTYTVEIMN 97
           FL   HRKLL         ++ EP R WGE+C+K D+VI QGPT  +P+GIPTYTVEIMN
Sbjct: 59  FLPNSHRKLL---TSGNGNERVEPNRIWGEKCSKSDVVINQGPTAPLPSGIPTYTVEIMN 115

Query: 98  ACETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFL 157
            C +GC+IS IHL CGWFSSA LIN K+ KRL YNDCLVN+G+PL++G T+ FQYANTFL
Sbjct: 116 MCVSGCDISGIHLRCGWFSSARLINPKLFKRLRYNDCLVNDGRPLINGATISFQYANTFL 175

Query: 158 YPLTVSSVVC 167
           YPL+VSSVVC
Sbjct: 176 YPLSVSSVVC 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518864|ref|XP_003528097.1| PREDICTED: uncharacterized protein LOC100792919 [Glycine max]

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 84/125 (67%), Positives = 100/125 (80%), Gaps = 4/125 (3%)

Query: 44  HRKLLLRSAKTKAAKKKEPER-WGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETG 102
           HRKLL         ++ EP R WGE+C+K DIVI QGPT  +P+GIPTYTVEIMN C +G
Sbjct: 56  HRKLL---TSDNGNERVEPNRIWGEKCSKSDIVINQGPTAPLPSGIPTYTVEIMNMCVSG 112

Query: 103 CNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTV 162
           C+IS+IHL CGWFSSA LIN K+ KRL YNDCLVN+G+PL++G T+ FQYANTFLYPL+V
Sbjct: 113 CDISKIHLRCGWFSSARLINPKLFKRLRYNDCLVNDGRPLINGATISFQYANTFLYPLSV 172

Query: 163 SSVVC 167
           SSVVC
Sbjct: 173 SSVVC 177

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456402|ref|XP_002280540.1| PREDICTED: uncharacterized protein LOC100261037 [Vitis vinifera]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 88/129 (68%), Positives = 101/129 (78%), Gaps = 8/129 (6%)

Query: 40  LHGPHRKLLLRSAKTKAAKKKEPER-WGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNA 98
           L  PHRKLL R+         EP R WGE+C+K DIVI QGPT  +P+GIPTYTVEIMN 
Sbjct: 47  LSVPHRKLLHRALV-------EPNRIWGEKCSKADIVINQGPTSPLPSGIPTYTVEIMNV 99

Query: 99  CETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLY 158
           C TGC+IS IHL+CGWFSSA LIN +I KRL Y+DCLVN+G+PL +GGTL FQYANTF Y
Sbjct: 100 CFTGCDISGIHLSCGWFSSARLINPRIFKRLRYDDCLVNDGRPLTNGGTLSFQYANTFPY 159

Query: 159 PLTVSSVVC 167
           PL+VSSVVC
Sbjct: 160 PLSVSSVVC 168

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119750|ref|XP_002318153.1| predicted protein [Populus trichocarpa] gi|222858826|gb|EEE96373.1| predicted protein [Populus trichocarpa]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 96/168 (57%), Positives = 114/168 (67%), Gaps = 25/168 (14%)

Query: 8   AFLSISGDDDDMGIIKRGRFISSSSDGGSFPFLH--------GPHRKLLLRSAKTKAAKK 59
           +FLS SG D+       G F+     G S  FLH          HRKLL+RS   +    
Sbjct: 27  SFLSGSGKDE-------GGFM-----GLSHMFLHEEGNYSVSALHRKLLVRSLAME---- 70

Query: 60  KEPERWGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAH 119
            EP R GE+CT  DIVI+QGPT  + +GIPTYTV+IMN C TGC+IS +HLNCGWFSSA 
Sbjct: 71  -EPNRIGEKCTSADIVISQGPTAPLSSGIPTYTVQIMNMCATGCDISRVHLNCGWFSSAR 129

Query: 120 LINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSSVVC 167
           LI+ KI KRL YNDCLVN+GKPLV+GG L F+YANTF YPL+VSS+ C
Sbjct: 130 LIDPKIFKRLRYNDCLVNDGKPLVTGGILTFEYANTFSYPLSVSSISC 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465003|ref|XP_003602783.1| Transcription activator BRG1 [Medicago truncatula] gi|355491831|gb|AES73034.1| Transcription activator BRG1 [Medicago truncatula]

 Score =  171 bits (434), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 81/131 (61%), Positives = 101/131 (77%), Gaps = 6/131 (4%)

Query: 32  SDGGSFPFLHGPHRKLLLRSAKTKAAKKKEPER-WGER-CTKEDIVITQGPTGIMPNGIP 89
           ++  ++  +H PHRKLL  SA     ++ EP R WG++ C+K DIVI QG T  +P+GIP
Sbjct: 56  NNNNNYTLIHTPHRKLLPHSA----TERLEPNRIWGDKKCSKSDIVINQGSTAPLPSGIP 111

Query: 90  TYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLK 149
           TYTVEIMN C +GC+IS IHL CGWFSSA LIN K+ KRL YNDCLVN+G+PLV+GGT+ 
Sbjct: 112 TYTVEIMNMCVSGCDISAIHLRCGWFSSARLINPKLFKRLRYNDCLVNDGRPLVNGGTVS 171

Query: 150 FQYANTFLYPL 160
           FQYANT+LYPL
Sbjct: 172 FQYANTYLYPL 182

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134064|ref|XP_002321727.1| predicted protein [Populus trichocarpa] gi|222868723|gb|EEF05854.1| predicted protein [Populus trichocarpa]

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/108 (71%), Positives = 90/108 (83%)

Query: 60  KEPERWGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAH 119
           +EP R GE+CT  DIV++QGPT  + +GIPTYTV+IMN C TGC+IS IHLNCGWFSS  
Sbjct: 4   EEPNRIGEKCTSADIVVSQGPTAPLSSGIPTYTVQIMNMCATGCDISGIHLNCGWFSSVR 63

Query: 120 LINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSSVVC 167
           LI+ KI KRL YNDCLVN+GKPLV+GGTL F+YANTF YPL VSS+VC
Sbjct: 64  LIDPKIFKRLRYNDCLVNDGKPLVTGGTLTFEYANTFSYPLGVSSIVC 111

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573031|ref|NP_974612.1| tapetum determinant 1 [Arabidopsis thaliana] gi|38607340|gb|AAR25553.1| TPD1 [Arabidopsis thaliana] gi|332659584|gb|AEE84984.1| tapetum determinant 1 [Arabidopsis thaliana]

 Score =  155 bits (392), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 75/125 (60%), Positives = 87/125 (69%), Gaps = 1/125 (0%)

Query: 44  HRKLLLRSAKT-KAAKKKEPERWGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETG 102
           HRK+LL S  T K  +  EPER GE+C   DIV+ Q  T  MPNGIP Y VEI N C +G
Sbjct: 51  HRKMLLLSPGTGKTERSVEPERIGEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSG 110

Query: 103 CNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTV 162
           C IS IH+NCGWFSSA LIN ++ KR+ Y+DCLVN GKPL  G TL F YANTF Y L+V
Sbjct: 111 CIISRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLSV 170

Query: 163 SSVVC 167
           + V C
Sbjct: 171 AFVTC 175

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803622|ref|XP_002869695.1| hypothetical protein ARALYDRAFT_914087 [Arabidopsis lyrata subsp. lyrata] gi|297315531|gb|EFH45954.1| hypothetical protein ARALYDRAFT_914087 [Arabidopsis lyrata subsp. lyrata]

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/127 (58%), Positives = 87/127 (68%), Gaps = 3/127 (2%)

Query: 44  HRKLLLRS---AKTKAAKKKEPERWGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACE 100
           HRK+LL S    K KA  + EPER G++C   DIV+ Q  T  MPNGIP Y VEI N C 
Sbjct: 56  HRKMLLLSPGPEKGKAESRAEPERIGDKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCM 115

Query: 101 TGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPL 160
           +GC IS IH+NCGWFSSA  IN ++ KR+ Y+DCLVN GKPL  G TL F YANTF Y L
Sbjct: 116 SGCIISRIHINCGWFSSAKWINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHL 175

Query: 161 TVSSVVC 167
           +V+ V C
Sbjct: 176 SVAFVTC 182

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434404|ref|XP_004134986.1| PREDICTED: uncharacterized protein LOC101212765 [Cucumis sativus] gi|449527967|ref|XP_004170979.1| PREDICTED: uncharacterized protein LOC101225882 [Cucumis sativus]

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 66/108 (61%), Positives = 82/108 (75%)

Query: 60  KEPERWGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAH 119
           KE  R G RC K+DI+I QGP   +P GIPTY V+I+N+C + C+IS IH+ CGWFSSA 
Sbjct: 55  KEMNRIGSRCAKDDIIIFQGPATPLPGGIPTYIVQILNSCASDCSISNIHVKCGWFSSAR 114

Query: 120 LINHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSSVVC 167
           L+N +I KR+SY+DCLVN+G+ L  G TL FQYANTF YPL+VSS  C
Sbjct: 115 LVNPRIFKRVSYDDCLVNDGRALGPGRTLSFQYANTFPYPLSVSSATC 162

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
TAIR|locus:1006230300	176	TPD1 "AT4G24972" [Arabidopsis	0.640	0.607	0.626	4.1e-33
TAIR|locus:1009023131	179	AT1G32583 "AT1G32583" [Arabido	0.622	0.581	0.576	1.1e-32
TAIR|locus:2116702	124	AT4G32090 [Arabidopsis thalian	0.491	0.661	0.329	1.1e-05
TAIR|locus:2116612	124	AT4G32110 [Arabidopsis thalian	0.598	0.806	0.285	1.9e-05

TAIR|locus:1006230300 TPD1 "AT4G24972" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 67/107 (62%), Positives = 77/107 (71%)

Query:    61 EPERWGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHL 120
             EPER GE+C   DIV+ Q  T  MPNGIP Y VEI N C +GC IS IH+NCGWFSSA L
Sbjct:    69 EPERIGEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSGCIISRIHINCGWFSSAKL 128

Query:   121 INHKILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSSVVC 167
             IN ++ KR+ Y+DCLVN GKPL  G TL F YANTF Y L+V+ V C
Sbjct:   129 INPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLSVAFVTC 175

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0001709 "cell fate determination" evidence=IMP

GO:0048653 "anther development" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:1009023131 AT1G32583 "AT1G32583" [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 60/104 (57%), Positives = 84/104 (80%)

Query:    64 RWGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINH 123
             R G+ C+K+DIV+ QG T  +P+G+P+YTVEI N+C + CNI+EIH++CGWFSS  L+N 
Sbjct:    75 RIGQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEIHVSCGWFSSVRLVNP 134

Query:   124 KILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSSVVC 167
             ++ +RL Y+DCLVN+G+PL  G +L FQYAN+F YPL+V+SV C
Sbjct:   135 RVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSYPLSVASVSC 178

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009408 "response to heat" evidence=IEP

TAIR|locus:2116702 AT4G32090 [Arabidopsis thaliana (taxid:3702)]

 Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 28/85 (32%), Positives = 41/85 (48%)

Query:    69 CTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKR 128
             CT   I I    TG    G P + V ++N C   C    + L+CG F+ A  +   +L+ 
Sbjct:    24 CTFGKIQIGAVRTGREIGGQPEWKVTVINTCN--CFQKHVTLSCGGFAPAKPVKPLLLQP 81

Query:   129 LSYNDCLVNEGKPLVSGGTLKFQYA 153
                N CL+ +G  L +G T +F YA
Sbjct:    82 QG-NTCLMIKGAALPAGATAQFTYA 105

GO:0005576 "extracellular region" evidence=ISM

GO:0006486 "protein glycosylation" evidence=IEA

GO:0008378 "galactosyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2116612 AT4G32110 [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 30/105 (28%), Positives = 48/105 (45%)

Query:    65 WGERCTKEDIVITQGPTGIMPNGIPTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHK 124
             +G+ C+   + + Q  TG +    P + V + N C   C      L C  F+S   I+  
Sbjct:    22 YGD-CSLNSLSVKQSKTGKLVQNKPEWEVRVTNPCNN-CKFQNTELLCVGFNSVTPIDTS 79

Query:   125 ILKRLSYNDCLVNEGKPLVSGGTLKFQYANTFLYPLTVSS--VVC 167
             +L + S + CLVN GK +V    + F+Y     + L V    +VC
Sbjct:    80 LLLK-SGDACLVNAGKFIVPHVDIVFKYVWDTSFDLKVIDGVMVC 123


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.138   0.442    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      167       139   0.00091  102 3  11 22  0.43    31
                                                     30  0.46    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  152 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.17u 0.09s 12.26t   Elapsed:  00:00:01
  Total cpu time:  12.17u 0.09s 12.26t   Elapsed:  00:00:01
  Start:  Fri May 10 07:44:23 2013   End:  Fri May 10 07:44:24 2013

GO:0005576 "extracellular region" evidence=ISM

GO:0006486 "protein glycosylation" evidence=IEA

GO:0008378 "galactosyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XII001005 hypothetical protein (178 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	167
PF09478	80	CBM49: Carbohydrate binding domain CBM49; InterPro	96.85
PLN02171	629	endoglucanase	88.9

>PF09478 CBM49: Carbohydrate binding domain CBM49; InterPro: IPR019028 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=96.85  E-value=0.0054  Score=43.64  Aligned_cols=75  Identities=21%  Similarity=0.256  Sum_probs=55.4

Q ss_pred             eeEEeeecCCCCC-Cc--ceEEEEEEcCccCCccceeEEEEcCCcccceeeCCcceeeecCCceEecC-CcccCCCCeEE
Q 031006           74 IVITQGPTGIMPN-GI--PTYTVEIMNACETGCNISEIHLNCGWFSSAHLINHKILKRLSYNDCLVNE-GKPLVSGGTLK  149 (167)
Q Consensus        74 IsVsQ~~TG~~v~-G~--Pey~VtI~N~C~~~C~~s~V~L~CgGF~Sa~~VDP~ifrrl~~d~CLVN~-G~PI~~g~~Vs  149 (167)
                      |+|.|..+..+.. |.  -+|.|+|+|.+  .=+++++++....+.+    +--=+.+..++..-+=+ -.+|.+|++.+
T Consensus         1 i~i~q~~~~sW~~~g~~y~qy~v~I~N~~--~~~I~~~~i~~~~l~~----~iW~l~~~~~~~y~lPs~~~~i~pg~s~~   74 (80)
T PF09478_consen    1 ITITQTLVNSWTENGQTYTQYDVTITNNG--SKPIKSLKISIDNLYG----SIWGLDKVSGNTYTLPSYQPTIKPGQSFT   74 (80)
T ss_pred             CEEEEEEEeEEEeCCEEEEEEEEEEEECC--CCeEEEEEEEECccch----hheeEEeccCCEEECCccccccCCCCEEE
Confidence            6889999887744 43  56999999999  6799999999997751    22222235566777633 34999999999


Q ss_pred             EEEec
Q 031006          150 FQYAN  154 (167)
Q Consensus       150 F~YAw  154 (167)
                      |-|-.
T Consensus        75 FGYI~   79 (80)
T PF09478_consen   75 FGYIS   79 (80)
T ss_pred             EEEEe
Confidence            99953

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This domain is found at the C-terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose []. ; GO: 0030246 carbohydrate binding, 0005576 extracellular region

>PLN02171 endoglucanase

Probab=88.90  E-value=0.95  Score=43.95  Aligned_cols=77  Identities=19%  Similarity=0.250  Sum_probs=53.8

Q ss_pred             CCCeeEEeeecCCCCC---CcceEEEEEEcCccCCccceeEEEEcCCcc-cceeeCCcceeeecCCceEecCCc-ccCCC
Q 031006           71 KEDIVITQGPTGIMPN---GIPTYTVEIMNACETGCNISEIHLNCGWFS-SAHLINHKILKRLSYNDCLVNEGK-PLVSG  145 (167)
Q Consensus        71 ~sDIsVsQ~~TG~~v~---G~Pey~VtI~N~C~~~C~~s~V~L~CgGF~-Sa~~VDP~ifrrl~~d~CLVN~G~-PI~~g  145 (167)
                      .+.|+|.|..++.+..   +..+|+|+|+|++  ..|++++++.=..+- +.=    .+.+  .++...+=+-. .|.+|
T Consensus       534 ~~ei~i~q~v~~sW~~~g~~y~qy~v~I~N~s--~~~ik~i~i~~~~~~~~iW----~v~~--~~ngytlPs~~~sL~aG  605 (629)
T PLN02171        534 SSPIEIEQKATASWKAKGRTYYRYSTTVTNRS--AKTLKELHLGISKLYGPLW----GLTK--AGYGYVLPSWMPSLPAG  605 (629)
T ss_pred             cceeEEEEEEEEEEEcCCceEEEEEEEEEECC--CCceeeeeeeeccccccch----heee--cCCcccCchhhcccCCC
Confidence            3479999999988753   4677999999999  899999999754442 211    1111  22334443332 78889


Q ss_pred             CeEEEEEecC
Q 031006          146 GTLKFQYANT  155 (167)
Q Consensus       146 ~~VsF~YAw~  155 (167)
                      +..+|-|-+.
T Consensus       606 ~s~tFgyI~~  615 (629)
T PLN02171        606 KSLEFVYVHS  615 (629)
T ss_pred             CeeEEEeecC
Confidence            9999999965

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00