Citrus Sinensis ID: 031019

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
Protein Sequence
MVSVAYVFSHRSTRFMYFHILPLTETPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEcccccEEEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccEEccc
Coil and Loop (DISEMBL)
MVSVAYVFShrstrfmyfhilpltetpdsakkkisgekkisgshdRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRatgttpkkllgcf
Flexible Loop (DISEMBL)
MVSVAYvfshrstrfmyfhilpltetpdsakKKISgekkisgshdrdvALAEVEKEKRESFIKAWeesektkaenkAQKKLSavaawenskkasLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAmvearrgedvlkAEEIAakyratgttpkkllgcf
Low Complexity Region (SEG)
MVSVAYVFSHRSTRFMYFHILPLTETPDsakkkisgekkisgsHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENskkasleaklkkieEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF
Disordered region (IsUnstruct)
***VAYVFSHRSTRFMYFHILPLT***********************************************************************************************************************************************
Disordered Region (DISOPRED)
****************************************************************W******KA**KAQKKLSAVAAWEN***************************************************************YRATGTTPKKLLGCF
Disordered Region (DISEMBL)
MVSVAYVFSHRSTRFMYFHILPLTETPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEE***************************LEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF
Disordered Region (DISPRO)
MVSVAYVFSHRSTRFMYFHILPLTE********************RDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSVAYVFSHRSTRFMYFHILPLTETPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	167	2.2.26 [Sep-21-2011]
P93788	198	Remorin OS=Solanum tubero	N/A	no	0.856	0.722	0.695	5e-51
Q9M2D8	212	Uncharacterized protein A	yes	no	0.778	0.613	0.746	6e-49
O80837	190	Remorin OS=Arabidopsis th	no	no	0.760	0.668	0.740	2e-42

>sp|P93788|REMO_SOLTU Remorin OS=Solanum tuberosum PE=1 SV=1

 Score =  199 bits (507), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 105/151 (69%), Positives = 123/151 (81%), Gaps = 8/151 (5%)

Query: 25  ETPDSAKKKI--------SGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENK 76
           E PD +K  +          ++K  GS DRD  LA V  EKR S IKAWEESEK+KAENK
Sbjct: 48  EKPDDSKALVVVETKAPEPADEKKEGSIDRDAVLARVATEKRVSLIKAWEESEKSKAENK 107

Query: 77  AQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVE 136
           AQKK+SA+ AWENSKKA+LEA+LKK+EEQLE+KKAEY EKMKNK+AL+HKEAEEKRAM+E
Sbjct: 108 AQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIE 167

Query: 137 ARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 167
           A+RGED+LKAEE+AAKYRATGT PKK+LG F
Sbjct: 168 AKRGEDLLKAEELAAKYRATGTAPKKILGIF 198

Binds to both simple and complex galacturonides. May be involved in cell-to-cell signaling and molecular transport.
Solanum tuberosum (taxid: 4113)

>sp|Q9M2D8|Y3126_ARATH Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1

 Score =  192 bits (489), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 97/130 (74%), Positives = 114/130 (87%)

Query: 38  KKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEA 97
           K  S S DRDV LA++ KEKR SF++AWEESEK+KAENKA+KK++ V AWENSKKA++EA
Sbjct: 83  KPASASLDRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEA 142

Query: 98  KLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATG 157
           +LKKIEEQLE+KKAEYAE+MKNKVA +HKEAEE+RAM+EA+RGEDVLKAEE AAKYRATG
Sbjct: 143 QLKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATG 202

Query: 158 TTPKKLLGCF 167
             PK   GCF
Sbjct: 203 IVPKATCGCF 212

Arabidopsis thaliana (taxid: 3702)

>sp|O80837|REMO_ARATH Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1

 Score =  171 bits (434), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 113/127 (88%)

Query: 41  SGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLK 100
           SGS DRDV LA++EKEK+ SFIKAWEESEK+KAEN+AQKK+S V AWENSKKA++EA+L+
Sbjct: 64  SGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLR 123

Query: 101 KIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTP 160
           KIEE+LE+KKA+Y EKMKNKVA +HK AEEKRAMVEA++GE++LKAEE+ AKYRATG  P
Sbjct: 124 KIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVVP 183

Query: 161 KKLLGCF 167
           K   GCF
Sbjct: 184 KATCGCF 190

Exhibits a non sequence-specific DNA-binding activity.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
255541538	188	Remorin, putative [Ricinus communis] gi|	0.820	0.728	0.823	3e-57
224130228	193	predicted protein [Populus trichocarpa]	0.850	0.735	0.755	1e-53
356520432	198	PREDICTED: remorin-like [Glycine max]	0.814	0.686	0.773	3e-53
224067874	196	predicted protein [Populus trichocarpa]	0.850	0.724	0.748	6e-53
351721994	183	uncharacterized protein LOC100305679 [Gl	0.856	0.781	0.731	3e-52
115459618	206	Os04g0533300 [Oryza sativa Japonica Grou	0.760	0.616	0.818	2e-51
242076586	212	hypothetical protein SORBIDRAFT_06g02363	0.832	0.655	0.75	6e-51
259490269	199	remorin [Zea mays] gi|194708138|gb|ACF88	0.826	0.693	0.726	7e-51
356504702	200	PREDICTED: remorin-like [Glycine max]	0.814	0.68	0.744	8e-51
449432167	183	PREDICTED: uncharacterized protein At3g6	0.808	0.737	0.771	9e-51

>gi|255541538|ref|XP_002511833.1| Remorin, putative [Ricinus communis] gi|223549013|gb|EEF50502.1| Remorin, putative [Ricinus communis]

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 117/142 (82%), Positives = 129/142 (90%), Gaps = 5/142 (3%)

Query: 26  TPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVA 85
            P+S  KK SG     GS DRD+ALAEVEKEKR SFIKAWE+SEK+KAENKAQKKLS+V 
Sbjct: 52  VPESGPKKTSG-----GSLDRDIALAEVEKEKRNSFIKAWEDSEKSKAENKAQKKLSSVT 106

Query: 86  AWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLK 145
           AWENSKKA+LEAKL+KIEEQLE+KKAEYAEKMKNKVALVHK+AEEKRAMVEA+RGE+VLK
Sbjct: 107 AWENSKKAALEAKLRKIEEQLEKKKAEYAEKMKNKVALVHKQAEEKRAMVEAQRGEEVLK 166

Query: 146 AEEIAAKYRATGTTPKKLLGCF 167
           AEE+AAKYRATG TPKKLLGCF
Sbjct: 167 AEEMAAKYRATGQTPKKLLGCF 188

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130228|ref|XP_002320784.1| predicted protein [Populus trichocarpa] gi|222861557|gb|EEE99099.1| predicted protein [Populus trichocarpa]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 111/147 (75%), Positives = 130/147 (88%), Gaps = 5/147 (3%)

Query: 21  LPLTETPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKK 80
           L + E  + A KKISG     GS DRD+ALA++EKEKR SFIKAWE+SEKTKAENK+QKK
Sbjct: 52  LAVVEKTEPAPKKISG-----GSIDRDIALADLEKEKRLSFIKAWEDSEKTKAENKSQKK 106

Query: 81  LSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRG 140
           LSAV AWENSKKA+LEA L+K+EE+LE++KAEYAEKMKNKVAL+HK+AEE+RAMVEA+RG
Sbjct: 107 LSAVVAWENSKKAALEATLRKMEEKLEKQKAEYAEKMKNKVALIHKDAEEQRAMVEAKRG 166

Query: 141 EDVLKAEEIAAKYRATGTTPKKLLGCF 167
           E+ LKAEE+AAKYRATG TPKKLLGCF
Sbjct: 167 EEFLKAEEMAAKYRATGQTPKKLLGCF 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520432|ref|XP_003528866.1| PREDICTED: remorin-like [Glycine max]

 Score =  212 bits (540), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 109/141 (77%), Positives = 126/141 (89%), Gaps = 5/141 (3%)

Query: 27  PDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAA 86
           P+  KK  SG     GS DRD+ALAE+EKEKR S +KAWEESEK+KAENKAQK+LSAVAA
Sbjct: 63  PEPVKKNASG-----GSLDRDIALAEIEKEKRLSNVKAWEESEKSKAENKAQKQLSAVAA 117

Query: 87  WENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKA 146
           WENSKKA+LEA+L+KIEEQLE+KKAEY EKMKNK+ALVHK+AEEKRAMVEA+RGE++LKA
Sbjct: 118 WENSKKAALEAQLRKIEEQLEKKKAEYGEKMKNKIALVHKQAEEKRAMVEAKRGEEILKA 177

Query: 147 EEIAAKYRATGTTPKKLLGCF 167
           EEIAAK+RATGT+PKK  GCF
Sbjct: 178 EEIAAKHRATGTSPKKAFGCF 198

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067874|ref|XP_002302576.1| predicted protein [Populus trichocarpa] gi|118481279|gb|ABK92585.1| unknown [Populus trichocarpa] gi|222844302|gb|EEE81849.1| predicted protein [Populus trichocarpa]

 Score =  211 bits (538), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 110/147 (74%), Positives = 129/147 (87%), Gaps = 5/147 (3%)

Query: 21  LPLTETPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKK 80
           L + E  + A KK+SG     GS DRDVALA++EKEKR SFIKAWE+SEKTKAENK+QK 
Sbjct: 55  LAVVEKTEPAPKKVSG-----GSIDRDVALADLEKEKRLSFIKAWEDSEKTKAENKSQKN 109

Query: 81  LSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRG 140
            SAVAAWENSKKA+LEAKL+K+EE+LE++KAEYAEKMKNK+AL+HKEAEEK+A+VEA+RG
Sbjct: 110 FSAVAAWENSKKAALEAKLRKMEEKLEKQKAEYAEKMKNKIALIHKEAEEKKAIVEAKRG 169

Query: 141 EDVLKAEEIAAKYRATGTTPKKLLGCF 167
           E+VLKA E AAKYRATG TPKKLLGCF
Sbjct: 170 EEVLKAGETAAKYRATGQTPKKLLGCF 196

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721994|ref|NP_001235181.1| uncharacterized protein LOC100305679 [Glycine max] gi|255626287|gb|ACU13488.1| unknown [Glycine max]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/149 (73%), Positives = 130/149 (87%), Gaps = 6/149 (4%)

Query: 20  ILPLTE-TPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQ 78
           I+ ++E TP  A K+ S      GS DRD+ALAEVEKEK+ S++KAWEESEK KAEN+AQ
Sbjct: 40  IVSVSEKTPVPANKQSS-----RGSIDRDIALAEVEKEKKLSYVKAWEESEKAKAENRAQ 94

Query: 79  KKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEAR 138
           K LSA+AAWENSKKA+LEA+LKK+EEQLE+KKAEY EKMKNKVALVHKEAEEKRAM+EA+
Sbjct: 95  KHLSAIAAWENSKKAALEAELKKLEEQLEKKKAEYGEKMKNKVALVHKEAEEKRAMIEAK 154

Query: 139 RGEDVLKAEEIAAKYRATGTTPKKLLGCF 167
           RGE++L+ EE+AAKYRATGTTPKK +GCF
Sbjct: 155 RGEEILQTEEMAAKYRATGTTPKKTIGCF 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115459618|ref|NP_001053409.1| Os04g0533300 [Oryza sativa Japonica Group] gi|32489830|emb|CAE04574.1| OSJNBb0039L24.13 [Oryza sativa Japonica Group] gi|113564980|dbj|BAF15323.1| Os04g0533300 [Oryza sativa Japonica Group] gi|125549138|gb|EAY94960.1| hypothetical protein OsI_16768 [Oryza sativa Indica Group] gi|125591096|gb|EAZ31446.1| hypothetical protein OsJ_15583 [Oryza sativa Japonica Group] gi|215678908|dbj|BAG96338.1| unnamed protein product [Oryza sativa Japonica Group] gi|215694390|dbj|BAG89383.1| unnamed protein product [Oryza sativa Japonica Group] gi|215741127|dbj|BAG97622.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/127 (81%), Positives = 118/127 (92%)

Query: 41  SGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLK 100
            GS+DRDVALA VE EKR S IKAWEE+EKTKAENKA KKLSA+ +WEN+KKA++EA+LK
Sbjct: 78  GGSNDRDVALARVETEKRNSLIKAWEENEKTKAENKASKKLSAILSWENTKKANIEAQLK 137

Query: 101 KIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTP 160
           KIEEQLE+KKAEYAEKMKNKVA+VHKEAEEKRAMVEA+RGE+VLKAEE+AAKYRATG  P
Sbjct: 138 KIEEQLEKKKAEYAEKMKNKVAIVHKEAEEKRAMVEAKRGEEVLKAEEMAAKYRATGHAP 197

Query: 161 KKLLGCF 167
           KKL+GCF
Sbjct: 198 KKLIGCF 204

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242076586|ref|XP_002448229.1| hypothetical protein SORBIDRAFT_06g023630 [Sorghum bicolor] gi|241939412|gb|EES12557.1| hypothetical protein SORBIDRAFT_06g023630 [Sorghum bicolor]

 Score =  205 bits (521), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 105/140 (75%), Positives = 126/140 (90%), Gaps = 1/140 (0%)

Query: 28  DSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAW 87
           + A +K + EK+  GS+DRD+ALA VE EKR S IKAWEE+EKTKAENKA KK+SA+ +W
Sbjct: 72  EPAPEKPAAEKQ-GGSNDRDLALARVETEKRNSLIKAWEENEKTKAENKAAKKVSAILSW 130

Query: 88  ENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAE 147
           EN+KKA++EA+LKKIEEQLE+KKAEYAEKMKNKVA++HKEAEEKRAMVEA+RGE+VLKAE
Sbjct: 131 ENTKKANIEAQLKKIEEQLEKKKAEYAEKMKNKVAMIHKEAEEKRAMVEAKRGEEVLKAE 190

Query: 148 EIAAKYRATGTTPKKLLGCF 167
           E+AAKYRATG  PKKL+GCF
Sbjct: 191 EMAAKYRATGHAPKKLIGCF 210

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259490269|ref|NP_001159012.1| remorin [Zea mays] gi|194708138|gb|ACF88153.1| unknown [Zea mays] gi|195628632|gb|ACG36146.1| remorin [Zea mays] gi|414586120|tpg|DAA36691.1| TPA: Remorin isoform 1 [Zea mays] gi|414586121|tpg|DAA36692.1| TPA: Remorin isoform 2 [Zea mays]

 Score =  204 bits (520), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 106/146 (72%), Positives = 124/146 (84%), Gaps = 8/146 (5%)

Query: 22  PLTETPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKL 81
           P  E P  AK+         GS+DRD+ALA VE EKR S IKAWEE+EKTKAENKA KK+
Sbjct: 60  PAPEKPAPAKQ--------GGSNDRDLALARVETEKRNSLIKAWEENEKTKAENKAAKKV 111

Query: 82  SAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGE 141
           SA+ +WEN+KKA++EA+LKKIEEQLE+KKAEYAEKMKNKVA++HKEAEEKRAMVEA+RGE
Sbjct: 112 SAILSWENTKKANIEAELKKIEEQLEKKKAEYAEKMKNKVAMIHKEAEEKRAMVEAKRGE 171

Query: 142 DVLKAEEIAAKYRATGTTPKKLLGCF 167
           +VLKAEE+AAKYRATG  PKKL+GCF
Sbjct: 172 EVLKAEEMAAKYRATGHAPKKLIGCF 197

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504702|ref|XP_003521134.1| PREDICTED: remorin-like [Glycine max]

 Score =  204 bits (520), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 105/141 (74%), Positives = 123/141 (87%), Gaps = 5/141 (3%)

Query: 27  PDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAA 86
           P+  KK  +G     GS DRD+ALAE+EKEKR S +KAWEESEK+KAENKA+K LSAVAA
Sbjct: 65  PEPVKKNATG-----GSLDRDIALAEIEKEKRLSNVKAWEESEKSKAENKAEKHLSAVAA 119

Query: 87  WENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKA 146
           WENSK A+LEA+L+KIEEQ+E+KKAEY EKMKNK+ LVHK+AEEKRAMVEA+RGE++LKA
Sbjct: 120 WENSKIAALEAQLRKIEEQMEKKKAEYGEKMKNKIVLVHKQAEEKRAMVEAKRGEEILKA 179

Query: 147 EEIAAKYRATGTTPKKLLGCF 167
           EEIAAK+RATGTTPKK  GCF
Sbjct: 180 EEIAAKHRATGTTPKKAFGCF 200

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432167|ref|XP_004133871.1| PREDICTED: uncharacterized protein At3g61260-like [Cucumis sativus] gi|449480176|ref|XP_004155821.1| PREDICTED: uncharacterized protein At3g61260-like [Cucumis sativus]

 Score =  204 bits (520), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 108/140 (77%), Positives = 121/140 (86%), Gaps = 5/140 (3%)

Query: 28  DSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAW 87
           D+  KK SG     GS DRD+ALAEVEKEKR SFIKAWE+SEK+KAENKAQKKLS+V AW
Sbjct: 49  DTVPKKASG-----GSIDRDIALAEVEKEKRFSFIKAWEDSEKSKAENKAQKKLSSVLAW 103

Query: 88  ENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAE 147
           ENSKKA+LEAKLKKIEE LE+KKAEY EKMKNKV L+HKEAEEK+A VEA+R E++LKAE
Sbjct: 104 ENSKKANLEAKLKKIEEDLEKKKAEYGEKMKNKVVLIHKEAEEKKATVEAQRSEELLKAE 163

Query: 148 EIAAKYRATGTTPKKLLGCF 167
           E AAK+RATGT PKK LGCF
Sbjct: 164 ETAAKFRATGTIPKKFLGCF 183

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
UNIPROTKB|P93788	198	P93788 "Remorin" [Solanum tube	0.736	0.621	0.707	4e-42
TAIR|locus:2098921	212	AT3G61260 [Arabidopsis thalian	0.736	0.580	0.674	1.6e-40
TAIR|locus:2172793	202	AT5G23750 "AT5G23750" [Arabido	0.730	0.603	0.655	8.7e-40
TAIR|locus:2050704	190	AT2G45820 "AT2G45820" [Arabido	0.736	0.647	0.658	2.9e-39
TAIR|locus:2101303	175	AT3G48940 "AT3G48940" [Arabido	0.730	0.697	0.639	1.9e-37
TAIR|locus:2127058	123	AT4G00670 "AT4G00670" [Arabido	0.670	0.910	0.389	6.5e-19
TAIR|locus:2054376	274	AT2G41870 "AT2G41870" [Arabido	0.658	0.401	0.336	5.3e-13
TAIR|locus:2103508	296	AT3G57540 "AT3G57540" [Arabido	0.706	0.398	0.322	1.8e-12
TAIR|locus:2051673	486	AT2G02170 "AT2G02170" [Arabido	0.712	0.244	0.310	2e-12
TAIR|locus:2204197	509	AT1G30320 "AT1G30320" [Arabido	0.634	0.208	0.348	9.2e-11

UNIPROTKB|P93788 P93788 "Remorin" [Solanum tuberosum (taxid:4113)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 87/123 (70%), Positives = 98/123 (79%)

Query:    45 DRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXE 104
             DRD  LA V  EKR S IKAWEESEK+KAENKAQKK+SA+ AWEN              E
Sbjct:    76 DRDAVLARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEE 135

Query:   105 QLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLL 164
             QLE+KKAEY EKMKNK+AL+HKEAEEKRAM+EA+RGED+LKAEE+AAKYRATGT PKK+L
Sbjct:   136 QLEKKKAEYTEKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGTAPKKIL 195

Query:   165 GCF 167
             G F
Sbjct:   196 GIF 198

GO:0005886 "plasma membrane" evidence=IDA

GO:0007267 "cell-cell signaling" evidence=NAS

GO:0048032 "galacturonate binding" evidence=IDA

TAIR|locus:2098921 AT3G61260 [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 83/123 (67%), Positives = 97/123 (78%)

Query:    45 DRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXE 104
             DRDV LA++ KEKR SF++AWEESEK+KAENKA+KK++ V AWEN              E
Sbjct:    90 DRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEE 149

Query:   105 QLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLL 164
             QLE+KKAEYAE+MKNKVA +HKEAEE+RAM+EA+RGEDVLKAEE AAKYRATG  PK   
Sbjct:   150 QLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATC 209

Query:   165 GCF 167
             GCF
Sbjct:   210 GCF 212

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2172793 AT5G23750 "AT5G23750" [Arabidopsis thaliana (taxid:3702)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 80/122 (65%), Positives = 95/122 (77%)

Query:    45 DRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXE 104
             +RD  LA VE EKR S IKAWEE+EK K ENKA+KKLS++ +WEN              E
Sbjct:    80 NRDAVLARVETEKRMSLIKAWEEAEKCKVENKAEKKLSSIGSWENNKKAAVEAELKKMEE 139

Query:   105 QLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLL 164
             QLE+KKAEY E+MKNK+A +HKEAEEKRAM+EA+RGE++LKAEE+AAKYRATGT PKKL 
Sbjct:   140 QLEKKKAEYVEQMKNKIAQIHKEAEEKRAMIEAKRGEEILKAEELAAKYRATGTAPKKLF 199

Query:   165 GC 166
             GC
Sbjct:   200 GC 201

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0042546 "cell wall biogenesis" evidence=RCA

TAIR|locus:2050704 AT2G45820 "AT2G45820" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 81/123 (65%), Positives = 96/123 (78%)

Query:    45 DRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXE 104
             DRDV LA++EKEK+ SFIKAWEESEK+KAEN+AQKK+S V AWEN              E
Sbjct:    68 DRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEE 127

Query:   105 QLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLL 164
             +LE+KKA+Y EKMKNKVA +HK AEEKRAMVEA++GE++LKAEE+ AKYRATG  PK   
Sbjct:   128 KLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVVPKATC 187

Query:   165 GCF 167
             GCF
Sbjct:   188 GCF 190

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2101303 AT3G48940 "AT3G48940" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 78/122 (63%), Positives = 91/122 (74%)

Query:    46 RDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQ 105
             RD  L  +E++KR S IKAWEE+EK+K ENKAQKK+S+V AWEN              EQ
Sbjct:    54 RDAVLVRLEQDKRISLIKAWEEAEKSKVENKAQKKISSVGAWENSKKASVEAELKKIEEQ 113

Query:   106 LERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLG 165
             L +KKA Y E+MKNK+A +HKEAEEKRAM EA+RGEDVLKAEE+AAKYRATGT P KL G
Sbjct:   114 LNKKKAHYTEQMKNKIAQIHKEAEEKRAMTEAKRGEDVLKAEEMAAKYRATGTAPTKLFG 173

Query:   166 CF 167
              F
Sbjct:   174 FF 175

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2127058 AT4G00670 "AT4G00670" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 44/113 (38%), Positives = 69/113 (61%)

Query:    56 EKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAE 115
             +++   IKAW+E + TK  NK QKKL  ++ WE                +++ KK E +E
Sbjct:    11 DEQSKVIKAWKELKITKVNNKTQKKLLDISGWEKKKTTKIESELARIQRKMDSKKMEKSE 70

Query:   116 KMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKL-LGCF 167
             K++N+ A VH +A++K+A V+ RR +++L AEE AA+++A G  PKK  L CF
Sbjct:    71 KLRNEKAAVHAKAQKKKADVQTRRAQEILDAEEAAARFQAAGKIPKKSSLSCF 123

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2054376 AT2G41870 "AT2G41870" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 5.3e-13, P = 5.3e-13
 Identities = 37/110 (33%), Positives = 60/110 (54%)

Query:    53 VEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKAE 112
             V++E+ E+ I AW+ ++  K  N+ +++ + +  W N               +LE +KA+
Sbjct:   158 VKREEVEAKITAWQTAKLAKINNRFKREDAVINGWFNEQVNKANSWMKKIERKLEERKAK 217

Query:   113 YAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKK 162
               EK +N VA   ++AEE+RA  EA+RG +V K  E+A   RA G  P K
Sbjct:   218 AMEKTQNNVAKAQRKAEERRATAEAKRGTEVAKVVEVANLMRALGRPPAK 267

GO:0003677 "DNA binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2103508 AT3G57540 "AT3G57540" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 39/121 (32%), Positives = 63/121 (52%)

Query:    45 DRDVALAEVEKEKRESF---IKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXX 101
             +R V  A V++ KRE     I AW+ ++  K  N+ +++ + +  W N            
Sbjct:   169 NRMVTTASVQRVKREEVEAKITAWQTAKVAKINNRFKRQDAVINGWLNEQVHRANSWMKK 228

Query:   102 XXEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPK 161
                +LE ++A+  EK +NKVA   ++AEE+RA  E +RG +V +  E+A   RA G  P 
Sbjct:   229 IERKLEDRRAKAMEKTQNKVAKAQRKAEERRATAEGKRGTEVARVLEVANLMRAVGRPPA 288

Query:   162 K 162
             K
Sbjct:   289 K 289

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2051673 AT2G02170 "AT2G02170" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 37/119 (31%), Positives = 58/119 (48%)

Query:    49 ALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLER 108
             A  +  K   E+   AWEE+EK K   + +++   + AWEN               ++ER
Sbjct:   364 ASLQTSKSVSEARATAWEEAEKAKHMARFRREEMKIQAWENHQKAKSEAEMKKTEVKVER 423

Query:   109 KKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 167
              K    +++  K+A + ++AEEKRA  EA++     K E+ A + R TG  P  L  CF
Sbjct:   424 IKGRAQDRLMKKLATIERKAEEKRAAAEAKKDHQAAKTEKQAEQIRRTGKVPSLLFSCF 482

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2204197 AT1G30320 "AT1G30320" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 9.2e-11, P = 9.2e-11
 Identities = 38/109 (34%), Positives = 58/109 (53%)

Query:    52 EVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKA 111
             ++E EKR +   AWEE+EK+K   + +++   + AWE+               ++E+ KA
Sbjct:   392 KIEFEKRAT---AWEEAEKSKHNARYKREEIRIQAWESQEKAKLEAEMRRIEAKVEQMKA 448

Query:   112 EYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTP 160
             E   K+  K+AL  + +EEKRA+ EAR+  D  KA   A   R TG  P
Sbjct:   449 EAEAKIMKKIALAKQRSEEKRALAEARKTRDAEKAVAEAQYIRETGRIP 497

GO:0003677 "DNA binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M2D8	Y3126_ARATH	No assigned EC number	0.7461	0.7784	0.6132	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_XIV0110 SubName- Full=Putative uncharacterized protein; (193 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	167
pfam03763	112	pfam03763, Remorin_C, Remorin, C-terminal region	1e-28

>gnl|CDD|190741 pfam03763, Remorin_C, Remorin, C-terminal region

 Score =  101 bits (254), Expect = 1e-28
 Identities = 67/111 (60%), Positives = 82/111 (73%)

Query: 53  VEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAE 112
            +K + ES   AWEE+EK K  NK Q++ + + AWEN KKA  EA+LKKIE +LE+KKAE
Sbjct: 1   SKKSEAESRADAWEEAEKAKINNKYQREEAKIQAWENKKKAKAEAELKKIERKLEKKKAE 60

Query: 113 YAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKL 163
            AEK+KNK+A  HK+AEEKRA  EA+RGE+  KAEE AAK RATG  P KL
Sbjct: 61  AAEKLKNKLAAAHKKAEEKRATAEAKRGEEEAKAEEKAAKIRATGKLPSKL 111

Remorins are plant-specific plasma membrane-associated proteins. In tobacco remorin co-purifies with lipid rafts. Most remorins have a variable, proline-rich C-half and a more conserved N-half that is predicted to form coiled coils. Consistent with this, circular dichroism studies have demonstrated that much of the protein is alpha-helical. Remorins exist in plasma membrane preparations as oligomeric structures and form filaments in vitro. The proteins can bind polyanions including the extracellular matrix component oligogalacturonic acid (OGA). In vitro, remorin in plasma membrane preparations is phosphorylated (principally on threonine residues) in the presence of OGA and thus co-purifies with a protein kinases(s). The biological functions of remorins are unknown but roles as components of the membrane/cytoskeleton are possible. Length = 112

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	167
PF03763	111	Remorin_C: Remorin, C-terminal region ; InterPro:	100.0
PF03763	111	Remorin_C: Remorin, C-terminal region ; InterPro:	96.88
PF03766	57	Remorin_N: Remorin, N-terminal region ; InterPro:	94.48

>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides

Probab=100.00  E-value=4.3e-38  Score=239.96  Aligned_cols=108  Identities=56%  Similarity=0.790  Sum_probs=105.7

Q ss_pred             HHHHHHhHHhHHHHHHhHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031019           55 KEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAM  134 (167)
Q Consensus        55 ~ek~~s~a~AWEeaEkaK~~~R~~reeakI~aWEn~qKAKAEA~mrK~E~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~  134 (167)
                      .+.+++++++||++|++|+++||++++++|++|||+|+++|+++|+++|++||++|+.++|+|+|+|+.||++||++|++
T Consensus         2 ~~~~~a~a~aWe~ae~aK~~~r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~   81 (111)
T PF03763_consen    2 KEEVEAKADAWEEAEKAKINNRYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAA   81 (111)
T ss_pred             cHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhchhHHHHHHHHHHHhhcCCCCCC
Q 031019          135 VEARRGEDVLKAEEIAAKYRATGTTPKK  162 (167)
Q Consensus       135 aeakr~ee~~K~~ekA~kiR~TGk~P~s  162 (167)
                      ++++++++++++.++|++||+||++|++
T Consensus        82 aea~r~~~~~k~~ekA~~~R~tG~~P~~  109 (111)
T PF03763_consen   82 AEARRGEEIAKAEEKAAKIRATGKVPSK  109 (111)
T ss_pred             HHHHHhhHHHhHHHHHHHHHhCCCCCcc
Confidence            9999999999999999999999999976

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides

Probab=96.88  E-value=0.032  Score=42.84  Aligned_cols=81  Identities=23%  Similarity=0.333  Sum_probs=63.5

Q ss_pred             HHHHHHHhHHhHHHHHHhHHHHHHHHhHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031019           54 EKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRA  133 (167)
Q Consensus        54 ~~ek~~s~a~AWEeaEkaK~~~R~~reeakI~aWEn~qKAKAEA~mrK~E~KLEkkRA~a~EKm~NKiA~a~kkAEekRA  133 (167)
                      ..++.++.|.+||..+++|+....++.|.++.-=-..---+....|..+..+.|.+|+.+..+-.+.+..+..+|.-.|+
T Consensus        23 r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~aea~r~~~~~k~~ekA~~~R~  102 (111)
T PF03763_consen   23 RYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAAAEARRGEEIAKAEEKAAKIRA  102 (111)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHh
Confidence            34567899999999999999999999998764322222224445566678899999999999999999999999988875


Q ss_pred             h
Q 031019          134 M  134 (167)
Q Consensus       134 ~  134 (167)
                      .
T Consensus       103 t  103 (111)
T PF03763_consen  103 T  103 (111)
T ss_pred             C
Confidence            3

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

>PF03766 Remorin_N: Remorin, N-terminal region ; InterPro: IPR005518 Remorin binds both simple and complex galaturonides

Probab=94.48  E-value=0.013  Score=40.71  Aligned_cols=19  Identities=58%  Similarity=0.672  Sum_probs=16.2

Q ss_pred             hcccCCCCCchhhHHHHHH
Q 031019           35 SGEKKISGSHDRDVALAEV   53 (167)
Q Consensus        35 ~~~~~~~gs~~rd~~l~~v   53 (167)
                      +.+|+++||+|||+.|++|
T Consensus        39 a~eK~s~GS~dRDa~LA~v   57 (57)
T PF03766_consen   39 AEEKPSEGSIDRDAALARV   57 (57)
T ss_pred             cccccCCCcchhhhhhhcC
Confidence            4567899999999999875

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00