Citrus Sinensis ID: 031020

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
Protein Sequence
MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI
Secondary Structure (PSIPRED)
ccccEEEEEEEEcccEEEEEEccccEEEEEEcccccccEEEcEEEEccEEEccccEEEEccccccccccccccccccccccccEEEEEEcccEEEEEEccccccccccccccccccEEEEEEEEccccccEEEcccEEEEccccccccccEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEccccEEEEEccccccEEEEEccccccccEEEEEEEEEEEEccccEEEEEccccccccccccccccEccccccEEEEEccccEEEEEccccccHHHHcccHHcccccEEEEEEcccccccEEEcccEEEEcccccccccccEEEEcccccccccEcc
Coil and Loop (DISEMBL)
MPGLITDFLISLDDRFLYFsnwlhgdirqyniedpknpvltgqiwvgglfrkgspvvavtddgqpyqsdvpevqghrlrggpqMIQLSLDGKRLYVTNSlfsawdcqfypelkekgshmlqidvnsekggmainpnffvdfeaepdgpalahemrypggdctsdiwi
Flexible Loop (DISEMBL)
MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVpevqghrlrgGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHemrypggdctsdiwi
Low Complexity Region (SEG)
MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI
Disordered region (IsUnstruct)
***LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTD*********************QMIQLSLDGKRLYVTNSLFSAWDCQFYP**********************INPNFFVDF**************************
Disordered Region (DISOPRED)
*PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI
Disordered Region (DISEMBL)
MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI
Disordered Region (DISPRO)
*PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	167	2.2.26 [Sep-21-2011]
O23264	490	Selenium-binding protein	yes	no	1.0	0.340	0.814	5e-79
Q93WN0	487	Selenium-binding protein	no	no	1.0	0.342	0.808	3e-78
Q9LK38	480	Selenium-binding protein	no	no	1.0	0.347	0.808	2e-77
Q569D5	472	Selenium-binding protein	yes	no	1.0	0.353	0.682	2e-63
Q5RF48	472	Selenium-binding protein	yes	no	1.0	0.353	0.682	1e-62
Q52KZ7	472	Selenium-binding protein	N/A	no	1.0	0.353	0.676	2e-62
Q13228	472	Selenium-binding protein	yes	no	1.0	0.353	0.670	3e-62
Q6DCH7	472	Selenium-binding protein	N/A	no	1.0	0.353	0.664	2e-61
Q8VIF7	472	Selenium-binding protein	yes	no	1.0	0.353	0.682	3e-61
Q2KJ32	472	Selenium-binding protein	yes	no	1.0	0.353	0.664	1e-60

>sp|O23264|SEBP1_ARATH Selenium-binding protein 1 OS=Arabidopsis thaliana GN=SBP1 PE=1 SV=1

 Score =  292 bits (748), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 136/167 (81%), Positives = 152/167 (91%)

Query: 1   MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
           MPGLITDFLISLDDRF+YF NWLHGDIRQYNIEDPKNPVLTGQIWVGGL +KGSPV AV 
Sbjct: 324 MPGLITDFLISLDDRFIYFVNWLHGDIRQYNIEDPKNPVLTGQIWVGGLLQKGSPVKAVG 383

Query: 61  DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
           +DG  +Q +VP+++G  LRGGPQMIQLSLDGKRLY TNSLFSAWD QFYPE+ EKGSH++
Sbjct: 384 EDGNTFQFEVPQIKGKSLRGGPQMIQLSLDGKRLYATNSLFSAWDRQFYPEIMEKGSHII 443

Query: 121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
           QIDV++EKGG+ INP+FFVDF  EPDGP+LAHEMRYPGGDCTSDIWI
Sbjct: 444 QIDVDTEKGGLTINPDFFVDFGDEPDGPSLAHEMRYPGGDCTSDIWI 490

Binds cadmium and mediates lower sensitivity to stress requiring glutathione (GSH) for tolerance (e.g. cadmium, selenate, and hydrogen peroxide excess). Probably helps to detoxify cadmium potentially through direct binding.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93WN0|SEBP2_ARATH Selenium-binding protein 2 OS=Arabidopsis thaliana GN=SBP2 PE=2 SV=1

 Score =  290 bits (742), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 135/167 (80%), Positives = 149/167 (89%)

Query: 1   MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
           MPGLITDFLISLDDRF YF NWLHGDIRQYNIEDPKNPVLTGQIWVGGL +KGSP  AV 
Sbjct: 321 MPGLITDFLISLDDRFFYFVNWLHGDIRQYNIEDPKNPVLTGQIWVGGLLQKGSPYKAVG 380

Query: 61  DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
           +DG  YQ DVP+++G  LR GPQMIQLSLDGKRLY TNSLFSAWD QFYPE+ EKGSH++
Sbjct: 381 EDGNTYQFDVPQIKGKSLRAGPQMIQLSLDGKRLYATNSLFSAWDRQFYPEIMEKGSHII 440

Query: 121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
           QIDV+++KGG+ +NP+FFVDF  EPDGPALAHEMRYPGGDCTSDIWI
Sbjct: 441 QIDVDTDKGGLTLNPDFFVDFGDEPDGPALAHEMRYPGGDCTSDIWI 487

Required for the fusion of female gametophyte polar nuclei.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK38|SEBP3_ARATH Selenium-binding protein 3 OS=Arabidopsis thaliana GN=SBP3 PE=2 SV=1

 Score =  287 bits (735), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 135/167 (80%), Positives = 152/167 (91%)

Query: 1   MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
           MPGLITDFLISLDDRFLY SNWLHGDIRQYNIEDPK PVLTGQI VGGL +KGS V+A+ 
Sbjct: 314 MPGLITDFLISLDDRFLYCSNWLHGDIRQYNIEDPKTPVLTGQIHVGGLVQKGSLVLALG 373

Query: 61  DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
           ++G+ +Q DVP+++G RLRGGPQM QLSLDGKRLYVTNSLFS WD QFYPEL EKGSHML
Sbjct: 374 EEGKAFQFDVPKIKGQRLRGGPQMFQLSLDGKRLYVTNSLFSVWDRQFYPELVEKGSHML 433

Query: 121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
           QIDV+++KGG++INPNFFVDF  EPDGP+LAHEMRYPGGDCTSDIW+
Sbjct: 434 QIDVDTDKGGLSINPNFFVDFGTEPDGPSLAHEMRYPGGDCTSDIWV 480

Arabidopsis thaliana (taxid: 3702)

>sp|Q569D5|SBP1_XENTR Selenium-binding protein 1 OS=Xenopus tropicalis GN=selenbp1 PE=2 SV=1

 Score =  241 bits (615), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/167 (68%), Positives = 135/167 (80%)

Query: 1   MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
           MPGLITD LISLDDRFLYFSNWLHGDIRQY+I DP+NP L GQI++GG   +G PV  + 
Sbjct: 306 MPGLITDILISLDDRFLYFSNWLHGDIRQYDITDPRNPKLVGQIFLGGSILRGGPVTVLE 365

Query: 61  DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
           D     Q D   V+G ++ GGPQMIQLSLDGKRLYVTNSL+S WD QFYP++ ++GS ML
Sbjct: 366 DKDLECQPDPVIVKGKKVPGGPQMIQLSLDGKRLYVTNSLYSKWDKQFYPDMIKEGSVML 425

Query: 121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
           QIDV++EKGG+ +NPNF VDF  EP GP LAHE+RYPGGDC+SDIW+
Sbjct: 426 QIDVDTEKGGLKLNPNFLVDFGKEPGGPVLAHELRYPGGDCSSDIWV 472

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Xenopus tropicalis (taxid: 8364)

>sp|Q5RF48|SBP1_PONAB Selenium-binding protein 1 OS=Pongo abelii GN=SELENBP1 PE=2 SV=1

 Score =  238 bits (608), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/167 (68%), Positives = 134/167 (80%)

Query: 1   MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
           MPGLITD L+SLDDRFLYFSNWLHGD+RQY+I DP+ P LTGQ++VGG   KG PV  + 
Sbjct: 306 MPGLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFVGGSIVKGGPVQVLE 365

Query: 61  DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
           D     Q +   V+G R+ GGPQMIQLSLDGKRLYVT SL+SAWD QFYP+L  +GS ML
Sbjct: 366 DQELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPDLIREGSVML 425

Query: 121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
           Q+DV++ KGG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct: 426 QVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Pongo abelii (taxid: 9601)

>sp|Q52KZ7|SBP1A_XENLA Selenium-binding protein 1-A OS=Xenopus laevis GN=selenbp1-a PE=2 SV=1

 Score =  237 bits (605), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 113/167 (67%), Positives = 135/167 (80%)

Query: 1   MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
           MPGLITD LISLDDRFLYFSNWLHGDIRQY+I D +NP L GQI++GG  ++G PV  + 
Sbjct: 306 MPGLITDILISLDDRFLYFSNWLHGDIRQYDITDTRNPKLVGQIFLGGSIQRGGPVTVLE 365

Query: 61  DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
           D     Q D   V+G  + GGPQMIQLSLDGKR+YVT+SL+S WD QFYP+L ++G+ ML
Sbjct: 366 DKELECQPDPVTVKGKIIPGGPQMIQLSLDGKRIYVTSSLYSIWDKQFYPDLLKEGAVML 425

Query: 121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
           QIDV+++KGG+ +NPNF VDF  EPDGP LAHE+RYPGGDCTSDIWI
Sbjct: 426 QIDVDTKKGGLKLNPNFLVDFGKEPDGPVLAHEIRYPGGDCTSDIWI 472

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Xenopus laevis (taxid: 8355)

>sp|Q13228|SBP1_HUMAN Selenium-binding protein 1 OS=Homo sapiens GN=SELENBP1 PE=1 SV=2

 Score =  237 bits (604), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 112/167 (67%), Positives = 135/167 (80%)

Query: 1   MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
           MPGLITD L+SLDDRFLYFSNWLHGD+RQY+I DP+ P LTGQ+++GG   KG PV  + 
Sbjct: 306 MPGLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFLGGSIVKGGPVQVLE 365

Query: 61  DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
           D+    Q +   V+G R+ GGPQMIQLSLDGKRLY+T SL+SAWD QFYP+L  +GS ML
Sbjct: 366 DEELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYITTSLYSAWDKQFYPDLIREGSVML 425

Query: 121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
           Q+DV++ KGG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct: 426 QVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Homo sapiens (taxid: 9606)

>sp|Q6DCH7|SBP1B_XENLA Selenium-binding protein 1-B OS=Xenopus laevis GN=selenbp1-b PE=2 SV=1

 Score =  234 bits (596), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 111/167 (66%), Positives = 134/167 (80%)

Query: 1   MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
           MPGLITD LISLDDRFLYFSNWLHGDIRQY+I + +NP L GQI++GG  +KG PV    
Sbjct: 306 MPGLITDILISLDDRFLYFSNWLHGDIRQYDITNIRNPKLVGQIFLGGSIQKGGPVAVQE 365

Query: 61  DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
           D     Q D   V+G  + GGPQMIQLSLDGKR+YVT+S++S WD QFYP++ ++G+ ML
Sbjct: 366 DKELECQPDPVTVKGKIIPGGPQMIQLSLDGKRIYVTSSIYSIWDKQFYPDMLKEGAVML 425

Query: 121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
           QIDV++EKGG+ +NPNF VDF  EPDGP LAHE+RYPGGDC+SDIWI
Sbjct: 426 QIDVDTEKGGLKLNPNFLVDFGKEPDGPVLAHELRYPGGDCSSDIWI 472

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Xenopus laevis (taxid: 8355)

>sp|Q8VIF7|SBP1_RAT Selenium-binding protein 1 OS=Rattus norvegicus GN=Selenbp1 PE=1 SV=1

 Score =  233 bits (595), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 114/167 (68%), Positives = 131/167 (78%)

Query: 1   MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
           MPGLITD L+SLDDRFLYFSNWLHGDIRQY+I +PK P LTGQI++GG   KG  V  + 
Sbjct: 306 MPGLITDILLSLDDRFLYFSNWLHGDIRQYDISNPKKPRLTGQIFLGGSIVKGGSVQVLE 365

Query: 61  DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
           D     Q +   V+G R+ GGPQMIQLSLDGKRLYVT SL+SAWD QFYP L  +GS ML
Sbjct: 366 DQELTCQPEPLVVKGKRVPGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPNLIREGSVML 425

Query: 121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
           QIDV++  GG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct: 426 QIDVDTANGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Rattus norvegicus (taxid: 10116)

>sp|Q2KJ32|SBP1_BOVIN Selenium-binding protein 1 OS=Bos taurus GN=SELENBP1 PE=1 SV=1

 Score =  231 bits (590), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 111/167 (66%), Positives = 131/167 (78%)

Query: 1   MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
           MP LITD L+SLDDRFLYFSNWLHGD+RQY+I DPK P L GQI++GG   KG PV  + 
Sbjct: 306 MPSLITDILLSLDDRFLYFSNWLHGDLRQYDISDPKRPRLVGQIFLGGSIVKGGPVQVLE 365

Query: 61  DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
           D     Q +   V+G R+ GGPQMIQLSLDG RLYVT SL+SAWD QFYP+L  +GS ML
Sbjct: 366 DQELKCQPEPLVVKGKRVAGGPQMIQLSLDGTRLYVTTSLYSAWDKQFYPDLIREGSVML 425

Query: 121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
           QIDV++ +GG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIW+
Sbjct: 426 QIDVDTVRGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWL 472

Selenium-binding protein which may be involved in the sensing of reactive xenobiotics in the cytoplasm. May be involved in intra-Golgi protein transport.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
224055825	483	predicted protein [Populus trichocarpa]	1.0	0.345	0.844	6e-81
356525197	484	PREDICTED: selenium-binding protein 2 [G	1.0	0.345	0.844	2e-80
15485716	487	selenium binding protein [Lotus japonicu	1.0	0.342	0.850	4e-80
388520385	488	unknown [Medicago truncatula]	1.0	0.342	0.850	6e-80
357462825	488	Selenium binding protein [Medicago trunc	1.0	0.342	0.844	2e-79
15485722	478	selenium binding protein [Glycine max]	1.0	0.349	0.838	2e-79
15485720	488	selenium binding protein [Medicago sativ	1.0	0.342	0.844	2e-79
255559184	475	selenium-binding protein, putative [Rici	1.0	0.351	0.838	2e-79
356568342	484	PREDICTED: selenium-binding protein 1-li	1.0	0.345	0.826	2e-79
356540103	480	PREDICTED: selenium-binding protein 1-li	1.0	0.347	0.826	3e-79

>gi|224055825|ref|XP_002298672.1| predicted protein [Populus trichocarpa] gi|222845930|gb|EEE83477.1| predicted protein [Populus trichocarpa]

 Score =  305 bits (780), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 141/167 (84%), Positives = 156/167 (93%)

Query: 1   MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
           MPGLITDFL+SLDDRFLYF NWLHGD+RQYNIEDPKNPVL GQ+WVGGL +KGSPVVA  
Sbjct: 317 MPGLITDFLLSLDDRFLYFVNWLHGDVRQYNIEDPKNPVLKGQVWVGGLIQKGSPVVAEG 376

Query: 61  DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
           +DG+ +Q DVPE+QGHRLRGGPQMIQLSLDGKRLYVTNSLFS WD QFYPE+ EKGSHML
Sbjct: 377 EDGKTWQYDVPEIQGHRLRGGPQMIQLSLDGKRLYVTNSLFSTWDRQFYPEVVEKGSHML 436

Query: 121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
           QIDV++EKGG+AINPN+FVDF +EPDGP+LAHEMRYPGGDCTSDIWI
Sbjct: 437 QIDVDTEKGGLAINPNYFVDFASEPDGPSLAHEMRYPGGDCTSDIWI 483

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525197|ref|XP_003531213.1| PREDICTED: selenium-binding protein 2 [Glycine max]

 Score =  303 bits (775), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 141/167 (84%), Positives = 155/167 (92%)

Query: 1   MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
           MPGLITDFLISLDDRFLYF NWLHGDIRQYNIEDPKNPVLTGQ+WVGGL +KGSP+VA+T
Sbjct: 318 MPGLITDFLISLDDRFLYFVNWLHGDIRQYNIEDPKNPVLTGQVWVGGLLQKGSPIVAIT 377

Query: 61  DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
           +DG  +QSDVP++QG++LR GPQMIQLSLDGKR+YVTNSLFSAWD QFYPEL EKGSHML
Sbjct: 378 EDGNTWQSDVPDIQGNKLRAGPQMIQLSLDGKRVYVTNSLFSAWDKQFYPELVEKGSHML 437

Query: 121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
           QIDV++E GG+ INPNFFVDF AEP GP LAHEMRYPGGDCTSDIWI
Sbjct: 438 QIDVDTENGGLKINPNFFVDFGAEPGGPCLAHEMRYPGGDCTSDIWI 484

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15485716|emb|CAC67491.1| selenium binding protein [Lotus japonicus] gi|15485718|emb|CAC67492.1| selenium binding protein [Lotus japonicus]

 Score =  301 bits (772), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 142/167 (85%), Positives = 155/167 (92%)

Query: 1   MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
           MPGLITDFLISLDDRFLYF NWLHGDIRQYNIED KNPVLTGQ+WVGGL +KGSPV A+ 
Sbjct: 321 MPGLITDFLISLDDRFLYFVNWLHGDIRQYNIEDLKNPVLTGQLWVGGLIQKGSPVAAIG 380

Query: 61  DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
           +DG+ +QSDVPE+QG +LRGGPQMIQL+LDGKRLYVTNSLFSAWD QFYP L EKGSH+L
Sbjct: 381 EDGKTWQSDVPEIQGQKLRGGPQMIQLTLDGKRLYVTNSLFSAWDKQFYPGLVEKGSHIL 440

Query: 121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
           QIDV++EKGG+ INPNFFVDF AEPDGPALAHEMRYPGGDCTSDIWI
Sbjct: 441 QIDVDTEKGGLKINPNFFVDFGAEPDGPALAHEMRYPGGDCTSDIWI 487

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520385|gb|AFK48254.1| unknown [Medicago truncatula]

 Score =  301 bits (771), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 142/167 (85%), Positives = 155/167 (92%)

Query: 1   MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
           MPGLITDFLISLDDRFLYF NWLHGDIRQYNIED KNP LTGQ+WVGGL +KGSPVVAV 
Sbjct: 322 MPGLITDFLISLDDRFLYFVNWLHGDIRQYNIEDVKNPKLTGQVWVGGLIQKGSPVVAVK 381

Query: 61  DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
           DDG+ +QSDVPE+QG +LRGGPQMIQLSLDGKRLYVTNSLFSAWD QFYP+L E+GSH+L
Sbjct: 382 DDGETWQSDVPEIQGKKLRGGPQMIQLSLDGKRLYVTNSLFSAWDKQFYPKLVEQGSHIL 441

Query: 121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
           QIDV++E GG+ INPNFFVDF AEPDGP+LAHEMRYPGGDCTSDIWI
Sbjct: 442 QIDVDTENGGLKINPNFFVDFGAEPDGPSLAHEMRYPGGDCTSDIWI 488

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462825|ref|XP_003601694.1| Selenium binding protein [Medicago truncatula] gi|355490742|gb|AES71945.1| Selenium binding protein [Medicago truncatula]

 Score =  300 bits (767), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 141/167 (84%), Positives = 154/167 (92%)

Query: 1   MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
           MPGLITDFLISLDDRFLYF NWLHGDIRQYNIED KNP LTGQ+W GGL +KGSPVVAV 
Sbjct: 322 MPGLITDFLISLDDRFLYFVNWLHGDIRQYNIEDVKNPKLTGQVWAGGLIQKGSPVVAVK 381

Query: 61  DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
           DDG+ +QSDVPE+QG +LRGGPQMIQLSLDGKRLYVTNSLFSAWD QFYP+L E+GSH+L
Sbjct: 382 DDGETWQSDVPEIQGKKLRGGPQMIQLSLDGKRLYVTNSLFSAWDKQFYPKLVEQGSHIL 441

Query: 121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
           QIDV++E GG+ INPNFFVDF AEPDGP+LAHEMRYPGGDCTSDIWI
Sbjct: 442 QIDVDTENGGLKINPNFFVDFGAEPDGPSLAHEMRYPGGDCTSDIWI 488

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15485722|emb|CAC67472.1| selenium binding protein [Glycine max]

 Score =  300 bits (767), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 140/167 (83%), Positives = 154/167 (92%)

Query: 1   MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
           MPGLITDFLISLDDRFLYF NWLHGDIRQYNIEDPKNPVLTGQ+WVG  F+KGSP+VA+T
Sbjct: 312 MPGLITDFLISLDDRFLYFVNWLHGDIRQYNIEDPKNPVLTGQVWVGDYFQKGSPIVAIT 371

Query: 61  DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
           +DG  +QSDVP++QG++L  GPQMIQLSLDGKR+YVTNSLFSAWD QFYPEL EKGSHML
Sbjct: 372 EDGNTWQSDVPDIQGNKLSAGPQMIQLSLDGKRVYVTNSLFSAWDKQFYPELVEKGSHML 431

Query: 121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
           QIDV++E GG+ INPNFFVDF AEP GPALAHEMRYPGGDCTSDIWI
Sbjct: 432 QIDVDTENGGLKINPNFFVDFGAEPGGPALAHEMRYPGGDCTSDIWI 478

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15485720|emb|CAC67501.1| selenium binding protein [Medicago sativa]

 Score =  300 bits (767), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 141/167 (84%), Positives = 154/167 (92%)

Query: 1   MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
           MPGLITDFLISLDDRFLYF NWLHGDIRQYNIED KNP LTGQ+W GGL +KGSPVVAV 
Sbjct: 322 MPGLITDFLISLDDRFLYFVNWLHGDIRQYNIEDVKNPKLTGQVWAGGLIQKGSPVVAVK 381

Query: 61  DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
           DDG+ +QSDVPE+QG +LRGGPQMIQLSLDGKRLYVTNSLFSAWD QFYP+L E+GSH+L
Sbjct: 382 DDGETWQSDVPEIQGKKLRGGPQMIQLSLDGKRLYVTNSLFSAWDKQFYPKLVEQGSHIL 441

Query: 121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
           QIDV++E GG+ INPNFFVDF AEPDGP+LAHEMRYPGGDCTSDIWI
Sbjct: 442 QIDVDTENGGLKINPNFFVDFGAEPDGPSLAHEMRYPGGDCTSDIWI 488

Source: Medicago sativa

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559184|ref|XP_002520613.1| selenium-binding protein, putative [Ricinus communis] gi|223540174|gb|EEF41749.1| selenium-binding protein, putative [Ricinus communis]

 Score =  299 bits (766), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 140/167 (83%), Positives = 154/167 (92%)

Query: 1   MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
           MPGLITDFLISLDDRFLYF NWLHGDIRQYNIED KNPVLTGQ+WVGGL +KGSP++  T
Sbjct: 309 MPGLITDFLISLDDRFLYFVNWLHGDIRQYNIEDLKNPVLTGQVWVGGLLQKGSPIMVET 368

Query: 61  DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
           +D   +Q+DVPE+QG+RLRGGPQMIQLSLDGKRLYVTNSLFS WD QFYPEL EKGSHML
Sbjct: 369 EDRSTWQADVPEIQGNRLRGGPQMIQLSLDGKRLYVTNSLFSTWDRQFYPELVEKGSHML 428

Query: 121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
           QIDV++EKGG+ +NPNFFVDF AEPDGP+LAHEMRYPGGDCTSDIWI
Sbjct: 429 QIDVDTEKGGLKVNPNFFVDFAAEPDGPSLAHEMRYPGGDCTSDIWI 475

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568342|ref|XP_003552370.1| PREDICTED: selenium-binding protein 1-like [Glycine max]

 Score =  299 bits (766), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 138/167 (82%), Positives = 155/167 (92%)

Query: 1   MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
           MPGLITDFLISLDDRFLYF NWLHGDIRQYNIED KNP LTGQ+WVGGL +KGSPVVA+T
Sbjct: 318 MPGLITDFLISLDDRFLYFVNWLHGDIRQYNIEDVKNPKLTGQVWVGGLIQKGSPVVAIT 377

Query: 61  DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
           DDG+ +Q++VPE+QG++LRGGPQMIQLSLDGKRLY TNSLFS WD QFYPEL +KGSH++
Sbjct: 378 DDGETWQAEVPEIQGNKLRGGPQMIQLSLDGKRLYATNSLFSTWDKQFYPELVQKGSHII 437

Query: 121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
           QIDV++EKGG+ INPNFFVDF  EPDGP+LAHEMRYPGGDCTSDIWI
Sbjct: 438 QIDVDTEKGGLKINPNFFVDFGTEPDGPSLAHEMRYPGGDCTSDIWI 484

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540103|ref|XP_003538530.1| PREDICTED: selenium-binding protein 1-like [Glycine max]

 Score =  299 bits (765), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 138/167 (82%), Positives = 156/167 (93%)

Query: 1   MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
           MPGLITDFLISLDDRFLYF NWLHGDIRQYNIE+ KNP LTGQ+WVGGL +KGSPVVA+T
Sbjct: 314 MPGLITDFLISLDDRFLYFVNWLHGDIRQYNIENLKNPKLTGQVWVGGLIQKGSPVVAIT 373

Query: 61  DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
           DDG+ +Q++VPE+QG++LRGGPQMIQLSLDGKRLY TNSLFS WD QFYPEL +KGSH++
Sbjct: 374 DDGETWQAEVPEIQGNKLRGGPQMIQLSLDGKRLYATNSLFSTWDKQFYPELVQKGSHII 433

Query: 121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
           QIDV++EKGG+ INPNFFVDF AEPDGP+LAHEMRYPGGDCTSDIWI
Sbjct: 434 QIDVDTEKGGLKINPNFFVDFGAEPDGPSLAHEMRYPGGDCTSDIWI 480

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
TAIR|locus:2129351	490	SBP1 "selenium-binding protein	1.0	0.340	0.814	1.7e-75
TAIR|locus:2129356	487	SBP2 "selenium-binding protein	1.0	0.342	0.808	9.3e-75
TAIR|locus:2095183	480	SBP3 "selenium-binding protein	1.0	0.347	0.808	8.4e-74
UNIPROTKB|F1ST01	472	SELENBP1 "Uncharacterized prot	1.0	0.353	0.682	3.9e-60
UNIPROTKB|Q13228	472	SELENBP1 "Selenium-binding pro	1.0	0.353	0.670	8.1e-60
UNIPROTKB|F1PNH6	502	SELENBP1 "Uncharacterized prot	1.0	0.332	0.670	3.5e-59
ZFIN|ZDB-GENE-040426-1436	473	selenbp1 "selenium binding pro	0.976	0.344	0.666	4.5e-59
RGD|620571	472	Selenbp1 "selenium binding pro	1.0	0.353	0.682	1.5e-58
UNIPROTKB|Q8VIF7	472	Selenbp1 "Selenium-binding pro	1.0	0.353	0.682	1.5e-58
UNIPROTKB|Q2KJ32	472	SELENBP1 "Selenium-binding pro	1.0	0.353	0.664	4e-58

TAIR|locus:2129351 SBP1 "selenium-binding protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
 Identities = 136/167 (81%), Positives = 152/167 (91%)

Query:     1 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
             MPGLITDFLISLDDRF+YF NWLHGDIRQYNIEDPKNPVLTGQIWVGGL +KGSPV AV 
Sbjct:   324 MPGLITDFLISLDDRFIYFVNWLHGDIRQYNIEDPKNPVLTGQIWVGGLLQKGSPVKAVG 383

Query:    61 DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
             +DG  +Q +VP+++G  LRGGPQMIQLSLDGKRLY TNSLFSAWD QFYPE+ EKGSH++
Sbjct:   384 EDGNTFQFEVPQIKGKSLRGGPQMIQLSLDGKRLYATNSLFSAWDRQFYPEIMEKGSHII 443

Query:   121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
             QIDV++EKGG+ INP+FFVDF  EPDGP+LAHEMRYPGGDCTSDIWI
Sbjct:   444 QIDVDTEKGGLTINPDFFVDFGDEPDGPSLAHEMRYPGGDCTSDIWI 490

GO:0005634 "nucleus" evidence=ISM

GO:0008430 "selenium binding" evidence=IEA;ISS

GO:0046686 "response to cadmium ion" evidence=IEP;IDA

GO:0000103 "sulfate assimilation" evidence=IEP

GO:0042542 "response to hydrogen peroxide" evidence=IDA

GO:0071291 "cellular response to selenium ion" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2129356 SBP2 "selenium-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
 Identities = 135/167 (80%), Positives = 149/167 (89%)

Query:     1 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
             MPGLITDFLISLDDRF YF NWLHGDIRQYNIEDPKNPVLTGQIWVGGL +KGSP  AV 
Sbjct:   321 MPGLITDFLISLDDRFFYFVNWLHGDIRQYNIEDPKNPVLTGQIWVGGLLQKGSPYKAVG 380

Query:    61 DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
             +DG  YQ DVP+++G  LR GPQMIQLSLDGKRLY TNSLFSAWD QFYPE+ EKGSH++
Sbjct:   381 EDGNTYQFDVPQIKGKSLRAGPQMIQLSLDGKRLYATNSLFSAWDRQFYPEIMEKGSHII 440

Query:   121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
             QIDV+++KGG+ +NP+FFVDF  EPDGPALAHEMRYPGGDCTSDIWI
Sbjct:   441 QIDVDTDKGGLTLNPDFFVDFGDEPDGPALAHEMRYPGGDCTSDIWI 487

GO:0008430 "selenium binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0010197 "polar nucleus fusion" evidence=IMP

TAIR|locus:2095183 SBP3 "selenium-binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
 Identities = 135/167 (80%), Positives = 152/167 (91%)

Query:     1 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
             MPGLITDFLISLDDRFLY SNWLHGDIRQYNIEDPK PVLTGQI VGGL +KGS V+A+ 
Sbjct:   314 MPGLITDFLISLDDRFLYCSNWLHGDIRQYNIEDPKTPVLTGQIHVGGLVQKGSLVLALG 373

Query:    61 DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
             ++G+ +Q DVP+++G RLRGGPQM QLSLDGKRLYVTNSLFS WD QFYPEL EKGSHML
Sbjct:   374 EEGKAFQFDVPKIKGQRLRGGPQMFQLSLDGKRLYVTNSLFSVWDRQFYPELVEKGSHML 433

Query:   121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
             QIDV+++KGG++INPNFFVDF  EPDGP+LAHEMRYPGGDCTSDIW+
Sbjct:   434 QIDVDTDKGGLSINPNFFVDFGTEPDGPSLAHEMRYPGGDCTSDIWV 480

GO:0005634 "nucleus" evidence=ISM

GO:0008430 "selenium binding" evidence=IEA;ISS

UNIPROTKB|F1ST01 SELENBP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 114/167 (68%), Positives = 134/167 (80%)

Query:     1 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
             MP LITD L+SLDDRFLYFSNWLHGD+RQY+I DPK P LTGQ+++GG   KG PV  + 
Sbjct:   306 MPSLITDILLSLDDRFLYFSNWLHGDLRQYDISDPKRPRLTGQLFLGGSIVKGGPVQVLE 365

Query:    61 DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
             D     Q +   V+G R+ GGPQMIQLSLDGKRLYVT SL+SAWD QFYP+L  +GS ML
Sbjct:   366 DQELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPDLIREGSVML 425

Query:   121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
             QIDV++EKGG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIW+
Sbjct:   426 QIDVDTEKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWL 472

GO:0005730 "nucleolus" evidence=IEA

GO:0008430 "selenium binding" evidence=IEA

UNIPROTKB|Q13228 SELENBP1 "Selenium-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 112/167 (67%), Positives = 135/167 (80%)

Query:     1 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
             MPGLITD L+SLDDRFLYFSNWLHGD+RQY+I DP+ P LTGQ+++GG   KG PV  + 
Sbjct:   306 MPGLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFLGGSIVKGGPVQVLE 365

Query:    61 DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
             D+    Q +   V+G R+ GGPQMIQLSLDGKRLY+T SL+SAWD QFYP+L  +GS ML
Sbjct:   366 DEELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYITTSLYSAWDKQFYPDLIREGSVML 425

Query:   121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
             Q+DV++ KGG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:   426 QVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472

GO:0008430 "selenium binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1PNH6 SELENBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 112/167 (67%), Positives = 134/167 (80%)

Query:     1 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
             MPGLITD L+SLDDRFLYFSNWLHGD+RQY+I DP+ P LTGQ+++GG   KG PV  + 
Sbjct:   336 MPGLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFLGGSIVKGGPVQVLE 395

Query:    61 DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
             D     Q +   V+G ++ GGPQMIQLSLDGKRLYVT SL+SAWD QFYP+L  +GS ML
Sbjct:   396 DQELKSQPEPLVVKGKKVPGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPDLIREGSVML 455

Query:   121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
             QIDV++ KGG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIW+
Sbjct:   456 QIDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWL 502

GO:0008430 "selenium binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1436 selenbp1 "selenium binding protein 1" [Danio rerio (taxid:7955)]

 Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
 Identities = 114/171 (66%), Positives = 137/171 (80%)

Query:     1 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
             MPGLITD LISLDDRFLYFSNWLHGDIRQY+I D KNP + GQ+++GG   K  PV  + 
Sbjct:   307 MPGLITDILISLDDRFLYFSNWLHGDIRQYDITDRKNPRMVGQVFLGGSVLKDGPVKVLE 366

Query:    61 D---DGQPYQSDVPEV-QGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKG 116
             D   D QP     P + +G R++GGPQM+QLSLDGKRLYVT SL+SAWD QFYP+L ++G
Sbjct:   367 DKELDSQP----TPRILKGKRVQGGPQMLQLSLDGKRLYVTTSLYSAWDKQFYPDLIKEG 422

Query:   117 SHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
             S M+QIDVN++ GG+ +N NF VDF AEP+GPALAHE+RYPGGDCTSDIW+
Sbjct:   423 SVMMQIDVNTDTGGLKLNENFLVDFGAEPEGPALAHELRYPGGDCTSDIWL 473

GO:0008430 "selenium binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

RGD|620571 Selenbp1 "selenium binding protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 114/167 (68%), Positives = 131/167 (78%)

Query:     1 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
             MPGLITD L+SLDDRFLYFSNWLHGDIRQY+I +PK P LTGQI++GG   KG  V  + 
Sbjct:   306 MPGLITDILLSLDDRFLYFSNWLHGDIRQYDISNPKKPRLTGQIFLGGSIVKGGSVQVLE 365

Query:    61 DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
             D     Q +   V+G R+ GGPQMIQLSLDGKRLYVT SL+SAWD QFYP L  +GS ML
Sbjct:   366 DQELTCQPEPLVVKGKRVPGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPNLIREGSVML 425

Query:   121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
             QIDV++  GG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:   426 QIDVDTANGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

GO:0005829 "cytosol" evidence=IEA

GO:0008430 "selenium binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0050873 "brown fat cell differentiation" evidence=ISO

UNIPROTKB|Q8VIF7 Selenbp1 "Selenium-binding protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 114/167 (68%), Positives = 131/167 (78%)

Query:     1 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
             MPGLITD L+SLDDRFLYFSNWLHGDIRQY+I +PK P LTGQI++GG   KG  V  + 
Sbjct:   306 MPGLITDILLSLDDRFLYFSNWLHGDIRQYDISNPKKPRLTGQIFLGGSIVKGGSVQVLE 365

Query:    61 DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
             D     Q +   V+G R+ GGPQMIQLSLDGKRLYVT SL+SAWD QFYP L  +GS ML
Sbjct:   366 DQELTCQPEPLVVKGKRVPGGPQMIQLSLDGKRLYVTTSLYSAWDKQFYPNLIREGSVML 425

Query:   121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
             QIDV++  GG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:   426 QIDVDTANGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472

GO:0008430 "selenium binding" evidence=IEA

UNIPROTKB|Q2KJ32 SELENBP1 "Selenium-binding protein 1" [Bos taurus (taxid:9913)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 111/167 (66%), Positives = 131/167 (78%)

Query:     1 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
             MP LITD L+SLDDRFLYFSNWLHGD+RQY+I DPK P L GQI++GG   KG PV  + 
Sbjct:   306 MPSLITDILLSLDDRFLYFSNWLHGDLRQYDISDPKRPRLVGQIFLGGSIVKGGPVQVLE 365

Query:    61 DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
             D     Q +   V+G R+ GGPQMIQLSLDG RLYVT SL+SAWD QFYP+L  +GS ML
Sbjct:   366 DQELKCQPEPLVVKGKRVAGGPQMIQLSLDGTRLYVTTSLYSAWDKQFYPDLIREGSVML 425

Query:   121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
             QIDV++ +GG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIW+
Sbjct:   426 QIDVDTVRGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWL 472

GO:0016020 "membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0008430 "selenium binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O23264	SEBP1_ARATH	No assigned EC number	0.8143	1.0	0.3408	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_I3319 hypothetical protein (484 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	167
pfam05694	461	pfam05694, SBP56, 56kDa selenium binding protein (	1e-100

>gnl|CDD|218697 pfam05694, SBP56, 56kDa selenium binding protein (SBP56)

 Score =  294 bits (755), Expect = e-100
 Identities = 100/166 (60%), Positives = 122/166 (73%), Gaps = 15/166 (9%)

Query: 2   PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTD 61
           P L+TD L+SLDDRFLY S W HGD+RQY+I DP NP LTGQ+ +GG+ R+         
Sbjct: 311 PPLVTDILLSLDDRFLYVSCWGHGDLRQYDISDPFNPKLTGQVRLGGIIRRA-------- 362

Query: 62  DGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQ 121
                    P V+G RL GGPQM+QLSLDGKRLYVTNSL+SAWD QFYP+  +KG  ML+
Sbjct: 363 -------PHPAVKGRRLNGGPQMVQLSLDGKRLYVTNSLYSAWDDQFYPDGVKKGGWMLK 415

Query: 122 IDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 167
           IDV+ + GG++++PNFFVDF  EPDGPA AHE+R PGGDC+SD W 
Sbjct: 416 IDVDPDNGGLSLDPNFFVDFGKEPDGPARAHEIRLPGGDCSSDSWC 461

This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins, in vesicular Golgi transport. Length = 461

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	167
KOG0918	476	consensus Selenium-binding protein [Inorganic ion	100.0
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	100.0
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.73
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.72
PRK11028	330	6-phosphogluconolactonase; Provisional	99.5
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.13
PRK11028	330	6-phosphogluconolactonase; Provisional	99.08
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.92
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.87
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.58
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	98.55
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.53
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.42
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.39
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.18
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.13
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.06
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.05
PF08309	42	LVIVD: LVIVD repeat; InterPro: IPR013211 This repe	97.77
COG3391	381	Uncharacterized conserved protein [Function unknow	97.68
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.67
PRK02888	635	nitrous-oxide reductase; Validated	97.6
PRK02888	635	nitrous-oxide reductase; Validated	97.49
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.44
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.42
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.15
COG3391	381	Uncharacterized conserved protein [Function unknow	97.12
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.04
COG5276	370	Uncharacterized conserved protein [Function unknow	97.01
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.36
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	96.34
PRK01742	429	tolB translocation protein TolB; Provisional	96.01
COG5276	370	Uncharacterized conserved protein [Function unknow	96.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	95.96
PRK03629	429	tolB translocation protein TolB; Provisional	95.95
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	95.86
KOG2055	514	consensus WD40 repeat protein [General function pr	95.8
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	95.74
PRK01742	429	tolB translocation protein TolB; Provisional	95.71
KOG2096	420	consensus WD40 repeat protein [General function pr	95.69
PRK02889	427	tolB translocation protein TolB; Provisional	95.65
PRK04792	448	tolB translocation protein TolB; Provisional	95.52
PRK01029	428	tolB translocation protein TolB; Provisional	95.48
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	95.47
PRK03629	429	tolB translocation protein TolB; Provisional	95.36
PRK00178	430	tolB translocation protein TolB; Provisional	95.28
KOG1539	910	consensus WD repeat protein [General function pred	95.27
PRK04792	448	tolB translocation protein TolB; Provisional	95.23
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.15
PRK04922	433	tolB translocation protein TolB; Provisional	95.14
PRK04922	433	tolB translocation protein TolB; Provisional	95.07
PRK02889	427	tolB translocation protein TolB; Provisional	94.99
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	94.68
PF13449	326	Phytase-like: Esterase-like activity of phytase	94.58
PRK05137	435	tolB translocation protein TolB; Provisional	94.47
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	94.44
PRK00178	430	tolB translocation protein TolB; Provisional	94.4
PRK01029	428	tolB translocation protein TolB; Provisional	94.24
PTZ00420	568	coronin; Provisional	94.19
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	94.11
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	93.75
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.74
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	93.55
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	93.51
PRK04043	419	tolB translocation protein TolB; Provisional	93.49
PRK04043	419	tolB translocation protein TolB; Provisional	93.33
PRK05137	435	tolB translocation protein TolB; Provisional	93.24
PF09826	521	Beta_propel: Beta propeller domain; InterPro: IPR0	92.97
KOG0266	456	consensus WD40 repeat-containing protein [General	92.76
COG4946	668	Uncharacterized protein related to the periplasmic	92.67
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	92.62
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.55
KOG0315	311	consensus G-protein beta subunit-like protein (con	92.54
PRK13616	591	lipoprotein LpqB; Provisional	91.93
KOG2110	391	consensus Uncharacterized conserved protein, conta	91.89
KOG0266	456	consensus WD40 repeat-containing protein [General	91.82
KOG0639	705	consensus Transducin-like enhancer of split protei	91.75
KOG0771	398	consensus Prolactin regulatory element-binding pro	91.27
KOG0647	347	consensus mRNA export protein (contains WD40 repea	90.51
KOG0263	707	consensus Transcription initiation factor TFIID, s	90.31
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	90.07
KOG3881	412	consensus Uncharacterized conserved protein [Funct	90.03
PTZ00421	493	coronin; Provisional	89.81
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	89.64
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	89.62
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	89.61
KOG0318	603	consensus WD40 repeat stress protein/actin interac	89.52
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	89.49
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	89.22
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	89.2
KOG0772	641	consensus Uncharacterized conserved protein, conta	89.14
KOG2321	703	consensus WD40 repeat protein [General function pr	88.78
KOG0293	519	consensus WD40 repeat-containing protein [Function	88.72
PF09826	521	Beta_propel: Beta propeller domain; InterPro: IPR0	88.72
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	88.66
KOG2315	566	consensus Predicted translation initiation factor	88.64
KOG0318	603	consensus WD40 repeat stress protein/actin interac	88.47
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	87.82
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	87.56
PTZ00421	493	coronin; Provisional	87.49
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	87.3
KOG2110	391	consensus Uncharacterized conserved protein, conta	87.17
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	87.13
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	86.97
KOG0639	705	consensus Transducin-like enhancer of split protei	86.6
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	86.4
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	86.38
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	86.18
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	86.11
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	86.07
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	85.8
KOG0283	712	consensus WD40 repeat-containing protein [Function	85.6
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	85.4
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	85.29
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	84.8
COG4946	668	Uncharacterized protein related to the periplasmic	84.33
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	83.48
KOG2096	420	consensus WD40 repeat protein [General function pr	83.42
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	83.33
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	83.25
KOG0283	712	consensus WD40 repeat-containing protein [Function	83.03
KOG0771	398	consensus Prolactin regulatory element-binding pro	81.77
PTZ00420	568	coronin; Provisional	81.73
KOG1407	313	consensus WD40 repeat protein [Function unknown]	81.43
KOG0293	519	consensus WD40 repeat-containing protein [Function	80.74
KOG1273	405	consensus WD40 repeat protein [General function pr	80.7
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	80.43
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	80.26

>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.6e-84  Score=581.28  Aligned_cols=167  Identities=74%  Similarity=1.296  Sum_probs=166.2

Q ss_pred             CCCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCC
Q 031020            1 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG   80 (167)
Q Consensus         1 ~p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g   80 (167)
                      ||||||||+||+||||||||||+||+||||||+||.+|||.|||++||++.++++|+|++++++..|||+++||||+++|
T Consensus       310 MP~LITDilISmDDRFLYvs~WLHGDirQYdIsDP~n~kLtgQi~lGG~i~~~s~vkvl~~e~~~~~~ea~~vKGrkl~G  389 (476)
T KOG0918|consen  310 MPGLITDILISLDDRFLYVSNWLHGDIRQYDISDPKNPKLTGQIFLGGSIQKGSPVKVLEEEGLKKQPEALYVKGRKLRG  389 (476)
T ss_pred             cchhhheeEEeecCcEEEEEeeeecceeeeccCCCCCcceEEEEEECcEeecCCceEEeccccccCCCccceecCccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCCCCcceeeeecCCCC
Q 031020           81 GPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGD  160 (167)
Q Consensus        81 ~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~gp~~~he~r~pggd  160 (167)
                      ||||||||+|||||||||||||+||+|||||++++|++|+|+|||+++|+|+||++|+|||++||+||+|||||||||||
T Consensus       390 GPQMlQLSLDGKRLYVt~SLys~WD~QFYPE~v~~G~~miqidvdt~~g~~~lN~~flvDf~~ep~gPsL~hemRypggd  469 (476)
T KOG0918|consen  390 GPQMLQLSLDGKRLYVTNSLYSAWDRQFYPELVSKGSHMIQIDVDTVKGGLSLNPDFLVDFGKEPDGPSLAHEMRYPGGD  469 (476)
T ss_pred             CceeEEeccCCcEEEEEchhhhhhHhhhCHHHHhcCceEEEEeeeccCCceeeCccceEEccCCCCCcchhhhcccCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccccC
Q 031020          161 CTSDIWI  167 (167)
Q Consensus       161 ctsd~~~  167 (167)
                      |||||||
T Consensus       470 Ctsdiwi  476 (476)
T KOG0918|consen  470 CTSDIWI  476 (476)
T ss_pred             ccccccC
Confidence            9999997

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=100.00  E-value=4.6e-75  Score=525.94  Aligned_cols=152  Identities=72%  Similarity=1.282  Sum_probs=100.8

Q ss_pred             CCCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCC
Q 031020            1 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG   80 (167)
Q Consensus         1 ~p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g   80 (167)
                      ||+|+|||+||+||||||||||+||+||||||+||++|||+|||++||++.++               +.+.|+|+++.|
T Consensus       310 ~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~---------------~~~~v~g~~l~G  374 (461)
T PF05694_consen  310 VPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKG---------------DHPVVKGKRLRG  374 (461)
T ss_dssp             E------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B-----------------TTS------S
T ss_pred             CCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccC---------------CCccccccccCC
Confidence            49999999999999999999999999999999999999999999999988765               668899999999


Q ss_pred             CCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCCCCcceeeeecCCCC
Q 031020           81 GPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGD  160 (167)
Q Consensus        81 ~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~gp~~~he~r~pggd  160 (167)
                      ||||+|||+|||||||||||||+||+||||+++++|++|+++|||+++|+|+||++|+|||++||+||+|||||||||||
T Consensus       375 gPqMvqlS~DGkRlYvTnSLys~WD~qfYP~~~~~g~~m~~iDvd~~~Ggl~l~~~F~VDFg~ep~Gp~raHe~R~pgGD  454 (461)
T PF05694_consen  375 GPQMVQLSLDGKRLYVTNSLYSAWDKQFYPDGVKNGSWMLKIDVDTENGGLTLDEDFLVDFGKEPDGPARAHEMRYPGGD  454 (461)
T ss_dssp             ----EEE-TTSSEEEEE----HHHHHHHSTT------EEEEEEE-TT-S-EEEEEEEEEE-TT-----SEEEEEEETT--
T ss_pred             CCCeEEEccCCeEEEEEeecccccccccCCCccccccEEEEEEecCCCCceeeCccceecccccccccccceeeecCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccccC
Q 031020          161 CTSDIWI  167 (167)
Q Consensus       161 ctsd~~~  167 (167)
                      ||||||+
T Consensus       455 ctSDi~~  461 (461)
T PF05694_consen  455 CTSDIWC  461 (461)
T ss_dssp             TTT---S
T ss_pred             ccccccC
Confidence            9999996

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.73  E-value=2.7e-17  Score=141.18  Aligned_cols=87  Identities=28%  Similarity=0.478  Sum_probs=75.2

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEecc-CCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIE-DPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIs-dp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .+++|+||||+||||||||++++|.+|+|+ +...+++++.++++|..                               |
T Consensus       246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~-------------------------------P  294 (345)
T PF10282_consen  246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF-------------------------------P  294 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS-------------------------------E
T ss_pred             CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC-------------------------------c
Confidence            589999999999999999999999999995 34678889999998843                               9


Q ss_pred             ceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCc
Q 031020           83 QMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPN  136 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~  136 (167)
                      |.|++|+||++|||||               ++++.|..+++|+++|.|+....
T Consensus       295 r~~~~s~~g~~l~Va~---------------~~s~~v~vf~~d~~tG~l~~~~~  333 (345)
T PF10282_consen  295 RHFAFSPDGRYLYVAN---------------QDSNTVSVFDIDPDTGKLTPVGS  333 (345)
T ss_dssp             EEEEE-TTSSEEEEEE---------------TTTTEEEEEEEETTTTEEEEEEE
T ss_pred             cEEEEeCCCCEEEEEe---------------cCCCeEEEEEEeCCCCcEEEecc
Confidence            9999999999999999               35788999999999999975543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.72  E-value=2.5e-17  Score=146.18  Aligned_cols=87  Identities=25%  Similarity=0.392  Sum_probs=77.1

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCC-CCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDP-KNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp-~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      -.|+|+||+||||||+|||+|++|+.|.|+.. ....++++++++|.+                               |
T Consensus       245 ~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~-------------------------------P  293 (346)
T COG2706         245 WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQF-------------------------------P  293 (346)
T ss_pred             ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcC-------------------------------C
Confidence            36899999999999999999999999999964 346679999999954                               9


Q ss_pred             ceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCc
Q 031020           83 QMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPN  136 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~  136 (167)
                      |.|.++++|++|+|||               ++++++..+.+|++||.|++-..
T Consensus       294 R~F~i~~~g~~Liaa~---------------q~sd~i~vf~~d~~TG~L~~~~~  332 (346)
T COG2706         294 RDFNINPSGRFLIAAN---------------QKSDNITVFERDKETGRLTLLGR  332 (346)
T ss_pred             ccceeCCCCCEEEEEc---------------cCCCcEEEEEEcCCCceEEeccc
Confidence            9999999999999999               47889999999999999965443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.50  E-value=2.2e-13  Score=114.06  Aligned_cols=94  Identities=19%  Similarity=0.275  Sum_probs=76.8

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCC-CCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDP-KNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp-~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      ..++|.+|||+|||||+|+.++.|.+|+++.. ...++++.+.+|.                                +|
T Consensus       229 ~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~--------------------------------~p  276 (330)
T PRK11028        229 WAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTET--------------------------------QP  276 (330)
T ss_pred             cceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccc--------------------------------cC
Confidence            34679999999999999999999999999753 3457788888753                                29


Q ss_pred             ceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCC
Q 031020           83 QMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPD  146 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~  146 (167)
                      +.|++|+||++|||+|+               .++++..+++|.++|.|+.-..|.+  +..|.
T Consensus       277 ~~~~~~~dg~~l~va~~---------------~~~~v~v~~~~~~~g~l~~~~~~~~--g~~P~  323 (330)
T PRK11028        277 RGFNIDHSGKYLIAAGQ---------------KSHHISVYEIDGETGLLTELGRYAV--GQGPM  323 (330)
T ss_pred             CceEECCCCCEEEEEEc---------------cCCcEEEEEEcCCCCcEEEcccccc--CCCce
Confidence            99999999999999993               4667888899889999987776655  44443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.13  E-value=8e-10  Score=95.13  Aligned_cols=94  Identities=19%  Similarity=0.291  Sum_probs=72.6

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccC-CCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIED-PKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd-p~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      +-.|++|+|++++||.|-+.+.|.+|++.. ....+.+..+.+...                      ..+|.   -.|.
T Consensus       194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~----------------------~~~~~---~~~~  248 (345)
T PF10282_consen  194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE----------------------GFTGE---NAPA  248 (345)
T ss_dssp             EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET----------------------TSCSS---SSEE
T ss_pred             CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc----------------------ccccc---CCce
Confidence            457999999999999999999999999993 345566777776541                      11122   1499


Q ss_pred             eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCcee
Q 031020           84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFF  138 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~  138 (167)
                      .+.+|||||+|||+|               +..+.|..+++|+++|.|++-..+.
T Consensus       249 ~i~ispdg~~lyvsn---------------r~~~sI~vf~~d~~~g~l~~~~~~~  288 (345)
T PF10282_consen  249 EIAISPDGRFLYVSN---------------RGSNSISVFDLDPATGTLTLVQTVP  288 (345)
T ss_dssp             EEEE-TTSSEEEEEE---------------CTTTEEEEEEECTTTTTEEEEEEEE
T ss_pred             eEEEecCCCEEEEEe---------------ccCCEEEEEEEecCCCceEEEEEEe
Confidence            999999999999999               4578899999999999998665543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.08  E-value=1.9e-09  Score=90.38  Aligned_cols=83  Identities=19%  Similarity=0.243  Sum_probs=62.2

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeE----EEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCC
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVL----TGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG   80 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pkl----vg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g   80 (167)
                      +..+++|||+|+|||+|.+.+.|++||+......+.    .-++..                            |.    
T Consensus       128 ~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~----------------------------g~----  175 (330)
T PRK11028        128 CHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE----------------------------GA----  175 (330)
T ss_pred             ccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC----------------------------CC----
Confidence            456789999999999999999999999975222110    011222                            22    


Q ss_pred             CCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeec
Q 031020           81 GPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAIN  134 (167)
Q Consensus        81 ~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~  134 (167)
                      +|+.+.++|||++|||+|               +.++.+..+|++..+|.+++-
T Consensus       176 ~p~~~~~~pdg~~lyv~~---------------~~~~~v~v~~~~~~~~~~~~~  214 (330)
T PRK11028        176 GPRHMVFHPNQQYAYCVN---------------ELNSSVDVWQLKDPHGEIECV  214 (330)
T ss_pred             CCceEEECCCCCEEEEEe---------------cCCCEEEEEEEeCCCCCEEEE
Confidence            399999999999999999               357788889998777776543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.92  E-value=7.4e-09  Score=92.32  Aligned_cols=64  Identities=17%  Similarity=0.193  Sum_probs=52.4

Q ss_pred             EEecCCCEEEEEeC---------CCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCC
Q 031020            9 LISLDDRFLYFSNW---------LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR   79 (167)
Q Consensus         9 ~IS~DdRfLYVSnw---------~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~   79 (167)
                      ++|+|+|+|||+|-         ..+.|.+||   +++.+.+++|.+|++                  |+..  -|..  
T Consensus        52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D---~~t~~~~~~i~~p~~------------------p~~~--~~~~--  106 (352)
T TIGR02658        52 VVASDGSFFAHASTVYSRIARGKRTDYVEVID---PQTHLPIADIELPEG------------------PRFL--VGTY--  106 (352)
T ss_pred             eECCCCCEEEEEeccccccccCCCCCEEEEEE---CccCcEEeEEccCCC------------------chhh--ccCc--
Confidence            49999999999999         899999999   456999999999873                  1111  1333  


Q ss_pred             CCCceEEEccCCCEEEEEeC
Q 031020           80 GGPQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        80 g~P~~~~LS~DGkrLyVaNs   99 (167)
                        |.+|+||+|||+|||+|.
T Consensus       107 --~~~~~ls~dgk~l~V~n~  124 (352)
T TIGR02658       107 --PWMTSLTPDNKTLLFYQF  124 (352)
T ss_pred             --cceEEECCCCCEEEEecC
Confidence              779999999999999993

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.87  E-value=1.5e-08  Score=89.68  Aligned_cols=58  Identities=34%  Similarity=0.575  Sum_probs=46.9

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      .+.+.+|+|+|+|||+|+ .|.|.++|+.   +.+++.+|.+|.                            .    |+.
T Consensus        39 h~~~~~s~Dgr~~yv~~r-dg~vsviD~~---~~~~v~~i~~G~----------------------------~----~~~   82 (369)
T PF02239_consen   39 HAGLKFSPDGRYLYVANR-DGTVSVIDLA---TGKVVATIKVGG----------------------------N----PRG   82 (369)
T ss_dssp             EEEEE-TT-SSEEEEEET-TSEEEEEETT---SSSEEEEEE-SS----------------------------E----EEE
T ss_pred             eeEEEecCCCCEEEEEcC-CCeEEEEECC---cccEEEEEecCC----------------------------C----cce
Confidence            456788999999999998 5899999955   478999999988                            3    999


Q ss_pred             EEEccCCCEEEEEe
Q 031020           85 IQLSLDGKRLYVTN   98 (167)
Q Consensus        85 ~~LS~DGkrLyVaN   98 (167)
                      +++|+|||+|||+|
T Consensus        83 i~~s~DG~~~~v~n   96 (369)
T PF02239_consen   83 IAVSPDGKYVYVAN   96 (369)
T ss_dssp             EEE--TTTEEEEEE
T ss_pred             EEEcCCCCEEEEEe
Confidence            99999999999999

...

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.58  E-value=1.3e-06  Score=77.54  Aligned_cols=117  Identities=18%  Similarity=0.260  Sum_probs=67.4

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeec-------------CCc---eeEeeCCCCCC--
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRK-------------GSP---VVAVTDDGQPY--   66 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~-------------~~~---v~v~~~~~~~~--   66 (167)
                      +-.|.+|+|||+|||+|+..+.|.++|.   ++.+++.+|++++.-..             ..+   +.+++..+.+.  
T Consensus        80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~---~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd  156 (369)
T PF02239_consen   80 PRGIAVSPDGKYVYVANYEPGTVSVIDA---ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD  156 (369)
T ss_dssp             EEEEEE--TTTEEEEEEEETTEEEEEET---TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred             cceEEEcCCCCEEEEEecCCCceeEecc---ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence            4579999999999999999999999994   45888999998864321             112   11122111111  


Q ss_pred             --CCCCccccCccCCCCCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCC
Q 031020           67 --QSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAE  144 (167)
Q Consensus        67 --~p~~~~~~g~~~~g~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~  144 (167)
                        .+.+..++-.+..--|.++.+++|||++++|+.               ....|..+|.  +++++.    ..+|.++.
T Consensus       157 y~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~---------------~sn~i~viD~--~~~k~v----~~i~~g~~  215 (369)
T PF02239_consen  157 YSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAAN---------------GSNKIAVIDT--KTGKLV----ALIDTGKK  215 (369)
T ss_dssp             TTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEG---------------GGTEEEEEET--TTTEEE----EEEE-SSS
T ss_pred             eccccccceeeecccccccccccCcccceeeeccc---------------ccceeEEEee--ccceEE----EEeecccc
Confidence              122222222223334999999999999999872               2446666665  777764    25677764


Q ss_pred             C
Q 031020          145 P  145 (167)
Q Consensus       145 p  145 (167)
                      |
T Consensus       216 p  216 (369)
T PF02239_consen  216 P  216 (369)
T ss_dssp             B
T ss_pred             c
Confidence            4

...

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=98.55  E-value=3.5e-07  Score=55.79  Aligned_cols=34  Identities=24%  Similarity=0.255  Sum_probs=30.4

Q ss_pred             cCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCc
Q 031020           12 LDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGG   48 (167)
Q Consensus        12 ~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG   48 (167)
                      ||+|+||||||.+++|.++|.   .+.+..+++.+|.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~---~~~~~~~~i~vg~   34 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDT---ATNKVIATIPVGG   34 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEEC---CCCeEEEEEECCC
Confidence            689999999999999999985   4588999999965

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.53  E-value=1.2e-06  Score=69.15  Aligned_cols=89  Identities=15%  Similarity=0.092  Sum_probs=64.7

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      +..|.+|+|++++|+++...+.|++||+..   .++...+..++                                .|..
T Consensus       209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~--------------------------------~~~~  253 (300)
T TIGR03866       209 PVGIKLTKDGKTAFVALGPANRVAVVDAKT---YEVLDYLLVGQ--------------------------------RVWQ  253 (300)
T ss_pred             ccceEECCCCCEEEEEcCCCCeEEEEECCC---CcEEEEEEeCC--------------------------------Ccce
Confidence            357899999999999988888999999753   45555554443                                2889


Q ss_pred             EEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCCCCc
Q 031020           85 IQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPA  149 (167)
Q Consensus        85 ~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~gp~  149 (167)
                      +.+||||++||++|+               ..+.+..+|+  +++..  -..+-  .+++|+|-+
T Consensus       254 ~~~~~~g~~l~~~~~---------------~~~~i~v~d~--~~~~~--~~~~~--~~~~~~~~~  297 (300)
T TIGR03866       254 LAFTPDEKYLLTTNG---------------VSNDVSVIDV--AALKV--IKSIK--VGRLPWGVV  297 (300)
T ss_pred             EEECCCCCEEEEEcC---------------CCCeEEEEEC--CCCcE--EEEEE--cccccceeE
Confidence            999999999999983               3556777887  55553  22222  367888733

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.42  E-value=2.5e-06  Score=76.25  Aligned_cols=74  Identities=18%  Similarity=0.148  Sum_probs=59.3

Q ss_pred             eEEEEecCCCEEEEEe---------CCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCc
Q 031020            6 TDFLISLDDRFLYFSN---------WLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGH   76 (167)
Q Consensus         6 tdI~IS~DdRfLYVSn---------w~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~   76 (167)
                      --|++++|++.|||++         -..+.|+++|   .++.|.+.+|.+|.                            
T Consensus       251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD---~~t~kvi~~i~vG~----------------------------  299 (352)
T TIGR02658       251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVD---AKTGKRLRKIELGH----------------------------  299 (352)
T ss_pred             eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEE---CCCCeEEEEEeCCC----------------------------
Confidence            3499999999999954         1226899999   56699999999976                            


Q ss_pred             cCCCCCceEEEccCCC-EEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe
Q 031020           77 RLRGGPQMIQLSLDGK-RLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM  131 (167)
Q Consensus        77 ~~~g~P~~~~LS~DGk-rLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l  131 (167)
                      .    |..+++|+||| +|||||.               .++.+..||+  .+++.
T Consensus       300 ~----~~~iavS~Dgkp~lyvtn~---------------~s~~VsViD~--~t~k~  334 (352)
T TIGR02658       300 E----IDSINVSQDAKPLLYALST---------------GDKTLYIFDA--ETGKE  334 (352)
T ss_pred             c----eeeEEECCCCCeEEEEeCC---------------CCCcEEEEEC--cCCeE
Confidence            3    99999999999 9999993               4556777887  66654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.39  E-value=3.8e-06  Score=75.40  Aligned_cols=103  Identities=17%  Similarity=0.271  Sum_probs=71.5

Q ss_pred             eEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeE--EEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            6 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVL--TGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         6 tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pkl--vg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      --|+++|++||.|+-|-+.++|.+|..+.. ..++  ...+.+                    .|+.  ..|..   |-.
T Consensus       194 RHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~t--------------------lP~d--F~g~~---~~a  247 (346)
T COG2706         194 RHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDT--------------------LPED--FTGTN---WAA  247 (346)
T ss_pred             ceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeecc--------------------Cccc--cCCCC---cee
Confidence            469999999999999999999999999853 2332  222221                    2322  12222   467


Q ss_pred             eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCce------eEeccCCCCCCc
Q 031020           84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNF------FVDFEAEPDGPA  149 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F------~vDf~~~p~gp~  149 (167)
                      .+.+|+|||+|||+|.               --+.|..+.||+.+|.|++....      -=||.--|.|=.
T Consensus       248 aIhis~dGrFLYasNR---------------g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~  304 (346)
T COG2706         248 AIHISPDGRFLYASNR---------------GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRF  304 (346)
T ss_pred             EEEECCCCCEEEEecC---------------CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCE
Confidence            8899999999999993               34577789999899988765433      335554455433

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.18  E-value=2e-05  Score=63.92  Aligned_cols=88  Identities=26%  Similarity=0.421  Sum_probs=57.4

Q ss_pred             ceeEEEEecCCCEEEEEeCCC--------CcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccC
Q 031020            4 LITDFLISLDDRFLYFSNWLH--------GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQG   75 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~h--------g~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g   75 (167)
                      .+-|+++++||+ ||+++-..        |.|.+++-.    .+ +..+..+-                           
T Consensus        87 ~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~----~~-~~~~~~~~---------------------------  133 (246)
T PF08450_consen   87 RPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD----GK-VTVVADGL---------------------------  133 (246)
T ss_dssp             EEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT----SE-EEEEEEEE---------------------------
T ss_pred             CCceEEEcCCCC-EEEEecCCCccccccccceEEECCC----Ce-EEEEecCc---------------------------
Confidence            457999999999 89987543        456666633    22 22222211                           


Q ss_pred             ccCCCCCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCC
Q 031020           76 HRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAE  144 (167)
Q Consensus        76 ~~~~g~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~  144 (167)
                          ..|+-+++|+||+.|||+++               ....|.+++.|..++.+. +...++++...
T Consensus       134 ----~~pNGi~~s~dg~~lyv~ds---------------~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~  182 (246)
T PF08450_consen  134 ----GFPNGIAFSPDGKTLYVADS---------------FNGRIWRFDLDADGGELS-NRRVFIDFPGG  182 (246)
T ss_dssp             ----SSEEEEEEETTSSEEEEEET---------------TTTEEEEEEEETTTCCEE-EEEEEEE-SSS
T ss_pred             ----ccccceEECCcchheeeccc---------------ccceeEEEecccccccee-eeeeEEEcCCC
Confidence                12999999999999999995               466799999986666554 44444676554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.13  E-value=8.8e-06  Score=71.98  Aligned_cols=58  Identities=31%  Similarity=0.450  Sum_probs=51.3

Q ss_pred             EEecCCCEEEEEe----CCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            9 LISLDDRFLYFSN----WLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         9 ~IS~DdRfLYVSn----w~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      .+|+|||+||++-    -+.|-|.+||..  ...+.+++.+++|.                               +|-.
T Consensus        57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~--~~~~ri~E~~s~GI-------------------------------GPHe  103 (305)
T PF07433_consen   57 VFSPDGRLLYTTENDYETGRGVIGVYDAA--RGYRRIGEFPSHGI-------------------------------GPHE  103 (305)
T ss_pred             EEcCCCCEEEEeccccCCCcEEEEEEECc--CCcEEEeEecCCCc-------------------------------Chhh
Confidence            6899999999994    467999999987  36888999999994                               3999


Q ss_pred             EEEccCCCEEEEEeC
Q 031020           85 IQLSLDGKRLYVTNS   99 (167)
Q Consensus        85 ~~LS~DGkrLyVaNs   99 (167)
                      +.+.+||+.|.|||-
T Consensus       104 l~l~pDG~tLvVANG  118 (305)
T PF07433_consen  104 LLLMPDGETLVVANG  118 (305)
T ss_pred             EEEcCCCCEEEEEcC
Confidence            999999999999994

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.06  E-value=5.7e-05  Score=61.21  Aligned_cols=81  Identities=21%  Similarity=0.471  Sum_probs=56.2

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEE-EEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTG-QIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg-~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .+-.|++|+|++.|||++-..+.|.+|+++.+.. ++.. ++...  +.                         ...|.|
T Consensus       135 ~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~-~~~~~~~~~~--~~-------------------------~~~g~p  186 (246)
T PF08450_consen  135 FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG-ELSNRRVFID--FP-------------------------GGPGYP  186 (246)
T ss_dssp             SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC-CEEEEEEEEE---S-------------------------SSSCEE
T ss_pred             cccceEECCcchheeecccccceeEEEecccccc-ceeeeeeEEE--cC-------------------------CCCcCC
Confidence            3568999999999999999999999999985332 2221 22211  10                         111349


Q ss_pred             ceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe
Q 031020           83 QMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM  131 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l  131 (167)
                      .-|+++.+| +||||.-               .++.+.++|.+   |.+
T Consensus       187 DG~~vD~~G-~l~va~~---------------~~~~I~~~~p~---G~~  216 (246)
T PF08450_consen  187 DGLAVDSDG-NLWVADW---------------GGGRIVVFDPD---GKL  216 (246)
T ss_dssp             EEEEEBTTS--EEEEEE---------------TTTEEEEEETT---SCE
T ss_pred             CcceEcCCC-CEEEEEc---------------CCCEEEEECCC---ccE
Confidence            999999999 5899972               46678878763   654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.05  E-value=4.3e-05  Score=60.32  Aligned_cols=60  Identities=23%  Similarity=0.397  Sum_probs=47.2

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      +..+.+|+|++.||+++...+.|+.||+..   .++..++..+.                            .    |..
T Consensus        33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~---~~~~~~~~~~~----------------------------~----~~~   77 (300)
T TIGR03866        33 PRGITLSKDGKLLYVCASDSDTIQVIDLAT---GEVIGTLPSGP----------------------------D----PEL   77 (300)
T ss_pred             CCceEECCCCCEEEEEECCCCeEEEEECCC---CcEEEeccCCC----------------------------C----ccE
Confidence            346889999999999998899999999654   44444444322                            2    778


Q ss_pred             EEEccCCCEEEEEeC
Q 031020           85 IQLSLDGKRLYVTNS   99 (167)
Q Consensus        85 ~~LS~DGkrLyVaNs   99 (167)
                      +.+++||++||++++
T Consensus        78 ~~~~~~g~~l~~~~~   92 (300)
T TIGR03866        78 FALHPNGKILYIANE   92 (300)
T ss_pred             EEECCCCCEEEEEcC
Confidence            999999999999985

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical

Probab=97.77  E-value=0.00015  Score=46.91  Aligned_cols=42  Identities=26%  Similarity=0.411  Sum_probs=33.2

Q ss_pred             CCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEe
Q 031020            2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWV   46 (167)
Q Consensus         2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~   46 (167)
                      |+-+.+|.++  |.++||+.+. +.+.++||+||.+|++++++.+
T Consensus         1 ~G~a~~v~v~--g~yaYva~~~-~Gl~IvDISnPs~P~~v~~~~T   42 (42)
T PF08309_consen    1 GGDARDVAVS--GNYAYVADGN-NGLVIVDISNPSNPVLVGSYDT   42 (42)
T ss_pred             CceEEEEEEE--CCEEEEEeCC-CCEEEEECCCCCCCEEEEEecC
Confidence            3445555554  6799999875 5689999999999999999864

The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.68  E-value=0.00043  Score=61.22  Aligned_cols=61  Identities=25%  Similarity=0.406  Sum_probs=52.3

Q ss_pred             ceeEEEEecCCCEEEEEeCC--CCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWL--HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~--hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      .+..+++++|++++||+|-+  .+.|.++|   +...++...+++|.                            .    
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid---~~t~~~~~~~~vG~----------------------------~----  161 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVID---AATNKVTATIPVGN----------------------------T----  161 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEe---CCCCeEEEEEecCC----------------------------C----
Confidence            56789999999999999984  67888666   66788888888876                            2    


Q ss_pred             CceEEEccCCCEEEEEeC
Q 031020           82 PQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaNs   99 (167)
                      |-.+.++++|+++||+|+
T Consensus       162 P~~~a~~p~g~~vyv~~~  179 (381)
T COG3391         162 PTGVAVDPDGNKVYVTNS  179 (381)
T ss_pred             cceEEECCCCCeEEEEec
Confidence            889999999999999993

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.67  E-value=0.00016  Score=65.08  Aligned_cols=70  Identities=24%  Similarity=0.296  Sum_probs=47.7

Q ss_pred             CceeEEEEecCCCEEEEEeC-------C--CCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccc
Q 031020            3 GLITDFLISLDDRFLYFSNW-------L--HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEV   73 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw-------~--hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~   73 (167)
                      ++.+.+++|+|+|++|+++=       +  .+-|.+||   +.+.+..+.|.+=++                  |  ..-
T Consensus        36 g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D---~~TL~~~~EI~iP~k------------------~--R~~   92 (342)
T PF06433_consen   36 GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWD---TQTLSPTGEIEIPPK------------------P--RAQ   92 (342)
T ss_dssp             ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEE---TTTTEEEEEEEETTS---------------------B--
T ss_pred             ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEe---cCcCcccceEecCCc------------------c--hhe
Confidence            45678999999999998652       2  35677888   556888888876441                  0  111


Q ss_pred             cCccCCCCCceEEEccCCCEEEEEeC
Q 031020           74 QGHRLRGGPQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        74 ~g~~~~g~P~~~~LS~DGkrLyVaNs   99 (167)
                      -+-.    +++++||.|||+|||.|-
T Consensus        93 ~~~~----~~~~~ls~dgk~~~V~N~  114 (342)
T PF06433_consen   93 VVPY----KNMFALSADGKFLYVQNF  114 (342)
T ss_dssp             BS------GGGEEE-TTSSEEEEEEE
T ss_pred             eccc----ccceEEccCCcEEEEEcc
Confidence            1123    999999999999999993

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.60  E-value=0.00031  Score=67.50  Aligned_cols=99  Identities=18%  Similarity=0.199  Sum_probs=56.3

Q ss_pred             ceeEEEEecCCCEEEEEeC---C-----------CCcEEEEeccCCCCCeEEE-EEEeCceeecCCceeEeeCCCC--CC
Q 031020            4 LITDFLISLDDRFLYFSNW---L-----------HGDIRQYNIEDPKNPVLTG-QIWVGGLFRKGSPVVAVTDDGQ--PY   66 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw---~-----------hg~I~qyDIsdp~~pklvg-~v~~GG~~~~~~~v~v~~~~~~--~~   66 (167)
                      -+--+.+|+||+++|++|-   .           .+.+..|++..-+...-.| ...++     +..|.|+.....  ..
T Consensus       236 npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~-----gn~V~VID~~t~~~~~  310 (635)
T PRK02888        236 NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIG-----GSKVPVVDGRKAANAG  310 (635)
T ss_pred             CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEEC-----CCEEEEEECCccccCC
Confidence            3445789999999999983   1           2233444432100000001 11111     245777765430  01


Q ss_pred             -CCCCccccCccCCCCCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeC
Q 031020           67 -QSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNS  126 (167)
Q Consensus        67 -~p~~~~~~g~~~~g~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~  126 (167)
                       .--.-..-|+.    |.-+.+|||||++||||               +-+.++-.||+..
T Consensus       311 ~~v~~yIPVGKs----PHGV~vSPDGkylyVan---------------klS~tVSVIDv~k  352 (635)
T PRK02888        311 SALTRYVPVPKN----PHGVNTSPDGKYFIANG---------------KLSPTVTVIDVRK  352 (635)
T ss_pred             cceEEEEECCCC----ccceEECCCCCEEEEeC---------------CCCCcEEEEEChh
Confidence             11112334566    99999999999999999               3466777788853

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.49  E-value=0.00044  Score=66.48  Aligned_cols=116  Identities=21%  Similarity=0.313  Sum_probs=73.2

Q ss_pred             CCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCC---------CeEEEEEEeCceeecCCceeEeeCCCCCCCCCCcc
Q 031020            2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKN---------PVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPE   72 (167)
Q Consensus         2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~---------pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~   72 (167)
                      |-.+-.|.+|||||++|++|.+.++|.++|++.-..         -.+++++.+|=                        
T Consensus       320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl------------------------  375 (635)
T PRK02888        320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL------------------------  375 (635)
T ss_pred             CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC------------------------
Confidence            445668999999999999999999999999885221         12466776643                        


Q ss_pred             ccCccCCCCCceEEEccCCCEEEEEeCCCc---cccccc----cccccccCcEEEE-EEeeCCCCCe--------eecCc
Q 031020           73 VQGHRLRGGPQMIQLSLDGKRLYVTNSLFS---AWDCQF----YPELKEKGSHMLQ-IDVNSEKGGM--------AINPN  136 (167)
Q Consensus        73 ~~g~~~~g~P~~~~LS~DGkrLyVaNsl~s---~wD~Qf----yp~~~~~g~~~~~-~dvD~~~G~l--------~l~~~  136 (167)
                              +|...+++.+|. .|+|=.|=|   .|+-+-    |--  ++...++. +||--.-|.+        +-+.+
T Consensus       376 --------GPLHTaFDg~G~-aytslf~dsqv~kwn~~~a~~~~~g--~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk  444 (635)
T PRK02888        376 --------GPLHTAFDGRGN-AYTTLFLDSQIVKWNIEAAIRAYKG--EKVDPIVQKLDVHYQPGHNHASMGETKEADGK  444 (635)
T ss_pred             --------CcceEEECCCCC-EEEeEeecceeEEEehHHHHHHhcc--ccCCcceecccCCCccceeeecCCCcCCCCCC
Confidence                    399999999986 777653322   365221    100  11122333 5554333433        34677


Q ss_pred             eeEeccC------CCCCCccee
Q 031020          137 FFVDFEA------EPDGPALAH  152 (167)
Q Consensus       137 F~vDf~~------~p~gp~~~h  152 (167)
                      |+|=..|      .|-||+.++
T Consensus       445 ~l~~~nk~skdrfl~vgpl~pe  466 (635)
T PRK02888        445 WLVSLNKFSKDRFLPVGPLHPE  466 (635)
T ss_pred             EEEEccccccccccCCCCCCCC
Confidence            7775544      467777654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.44  E-value=0.00083  Score=67.29  Aligned_cols=85  Identities=27%  Similarity=0.317  Sum_probs=55.9

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeC-ceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVG-GLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~G-G~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      +.+|++++++..|||++++.+.|++||..+   ....  +..| |...           ....... .....    ..|.
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~---g~v~--~~~G~G~~~-----------~~~g~~~-~~~~~----~~P~  743 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISD---GVTR--VFSGDGYER-----------NLNGSSG-TSTSF----AQPS  743 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECCC---CeEE--EEecCCccc-----------cCCCCcc-ccccc----cCcc
Confidence            578999999999999999999999999765   2221  1211 1000           0000000 00011    2499


Q ss_pred             eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEee
Q 031020           84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN  125 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD  125 (167)
                      .+++++||++||||++               .+..|.++|.+
T Consensus       744 GIavspdG~~LYVADs---------------~n~~Irv~D~~  770 (1057)
T PLN02919        744 GISLSPDLKELYIADS---------------ESSSIRALDLK  770 (1057)
T ss_pred             EEEEeCCCCEEEEEEC---------------CCCeEEEEECC
Confidence            9999999999999994               45677778774

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.42  E-value=0.00092  Score=66.99  Aligned_cols=95  Identities=19%  Similarity=0.246  Sum_probs=57.8

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceee-cCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFR-KGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~-~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      ++.|++|+|+++|||++...+.|++||+.... .    .+..||.-. ...-.+. .+.+.   +. ......    .|.
T Consensus       742 P~GIavspdG~~LYVADs~n~~Irv~D~~tg~-~----~~~~gg~~~~~~~l~~f-G~~dG---~g-~~~~l~----~P~  807 (1057)
T PLN02919        742 PSGISLSPDLKELYIADSESSSIRALDLKTGG-S----RLLAGGDPTFSDNLFKF-GDHDG---VG-SEVLLQ----HPL  807 (1057)
T ss_pred             ccEEEEeCCCCEEEEEECCCCeEEEEECCCCc-E----EEEEecccccCcccccc-cCCCC---ch-hhhhcc----CCc
Confidence            56799999999999999999999999976421 1    223333100 0000000 00000   00 001122    399


Q ss_pred             eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe
Q 031020           84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM  131 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l  131 (167)
                      -+++++||+ ||||++               .+..|.++|.  .+|.+
T Consensus       808 Gvavd~dG~-LYVADs---------------~N~rIrviD~--~tg~v  837 (1057)
T PLN02919        808 GVLCAKDGQ-IYVADS---------------YNHKIKKLDP--ATKRV  837 (1057)
T ss_pred             eeeEeCCCc-EEEEEC---------------CCCEEEEEEC--CCCeE
Confidence            999999997 999994               5677887887  44544

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.15  E-value=0.0038  Score=50.47  Aligned_cols=59  Identities=19%  Similarity=0.279  Sum_probs=46.2

Q ss_pred             eeEEEEecCCCEEEEEeCC--CCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            5 ITDFLISLDDRFLYFSNWL--HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~--hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .-.|..||+|++|-++..+  .|+|..||+.+   .+.+.+.....                                 .
T Consensus       103 ~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~---~~~i~~~~~~~---------------------------------~  146 (194)
T PF08662_consen  103 RNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK---KKKISTFEHSD---------------------------------A  146 (194)
T ss_pred             ceEEEECCCCCEEEEEEccCCCcEEEEEECCC---CEEeeccccCc---------------------------------E
Confidence            3469999999999998865  57899999874   55555443322                                 6


Q ss_pred             ceEEEccCCCEEEEEeC
Q 031020           83 QMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNs   99 (167)
                      ..++.|||||+|..+.+
T Consensus       147 t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen  147 TDVEWSPDGRYLATATT  163 (194)
T ss_pred             EEEEEcCCCCEEEEEEe
Confidence            78899999999999985

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.12  E-value=0.0057  Score=54.13  Aligned_cols=62  Identities=23%  Similarity=0.314  Sum_probs=46.7

Q ss_pred             ceeEEEEecCCCEEEEEeCCC--CcEEEEeccCCCCCeEEEE-EEeCceeecCCceeEeeCCCCCCCCCCccccCccCCC
Q 031020            4 LITDFLISLDDRFLYFSNWLH--GDIRQYNIEDPKNPVLTGQ-IWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG   80 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~h--g~I~qyDIsdp~~pklvg~-v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g   80 (167)
                      .+..|.|++|++++||.|..+  +.|..+|..   ..++... ...+.                          +     
T Consensus       208 ~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~---~~~v~~~~~~~~~--------------------------~-----  253 (381)
T COG3391         208 GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTA---TGNVTATDLPVGS--------------------------G-----  253 (381)
T ss_pred             CCceEEECCCCCEEEEEeccCCCceEEEEeCC---CceEEEecccccc--------------------------C-----
Confidence            467899999999999999998  466655533   3444444 33322                          1     


Q ss_pred             CCceEEEccCCCEEEEEeC
Q 031020           81 GPQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        81 ~P~~~~LS~DGkrLyVaNs   99 (167)
                      +|++..++|+|+..||+|+
T Consensus       254 ~~~~v~~~p~g~~~yv~~~  272 (381)
T COG3391         254 APRGVAVDPAGKAAYVANS  272 (381)
T ss_pred             CCCceeECCCCCEEEEEec
Confidence            3999999999999999996

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.04  E-value=0.0069  Score=53.22  Aligned_cols=47  Identities=32%  Similarity=0.552  Sum_probs=33.6

Q ss_pred             CceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCC
Q 031020           82 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAE  144 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~  144 (167)
                      |+-+++|||||+||+|-+               ....+.+++.|+.+|. .-+..=+++|..+
T Consensus       165 ~NGla~SpDg~tly~aDT---------------~~~~i~r~~~d~~~g~-~~~~~~~~~~~~~  211 (307)
T COG3386         165 PNGLAFSPDGKTLYVADT---------------PANRIHRYDLDPATGP-IGGRRGFVDFDEE  211 (307)
T ss_pred             cCceEECCCCCEEEEEeC---------------CCCeEEEEecCcccCc-cCCcceEEEccCC
Confidence            999999999999999995               4567777888764443 3333445666543

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=97.01  E-value=0.0051  Score=55.58  Aligned_cols=45  Identities=27%  Similarity=0.619  Sum_probs=38.5

Q ss_pred             CCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCce
Q 031020            2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGL   49 (167)
Q Consensus         2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~   49 (167)
                      +.+++|+.+|-+  +.|++-|.. -++.+||++|++|++.|+..+-|.
T Consensus        86 ~~l~~Dv~vse~--yvyvad~ss-GL~IvDIS~P~sP~~~~~lnt~gy  130 (370)
T COG5276          86 RDLFADVRVSEE--YVYVADWSS-GLRIVDISTPDSPTLIGFLNTDGY  130 (370)
T ss_pred             hhhhheeEeccc--EEEEEcCCC-ceEEEeccCCCCcceeccccCCce
Confidence            567889998854  899999855 689999999999999999999663

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.36  E-value=0.007  Score=54.55  Aligned_cols=58  Identities=31%  Similarity=0.494  Sum_probs=48.2

Q ss_pred             EEecCCCEEEEEeC----CCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            9 LISLDDRFLYFSNW----LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         9 ~IS~DdRfLYVSnw----~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      .+|+||++||.+--    ..|-|-+||..  ++-.-+|.+++-|.                               ||..
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r--~~fqrvgE~~t~Gi-------------------------------GpHe  166 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAR--EGFQRVGEFSTHGI-------------------------------GPHE  166 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecc--cccceecccccCCc-------------------------------Ccce
Confidence            47999999999864    34789999987  34556888888773                               4999


Q ss_pred             EEEccCCCEEEEEeC
Q 031020           85 IQLSLDGKRLYVTNS   99 (167)
Q Consensus        85 ~~LS~DGkrLyVaNs   99 (167)
                      +.|.+||+.|.|+|-
T Consensus       167 v~lm~DGrtlvvanG  181 (366)
T COG3490         167 VTLMADGRTLVVANG  181 (366)
T ss_pred             eEEecCCcEEEEeCC
Confidence            999999999999994

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=96.34  E-value=0.013  Score=35.22  Aligned_cols=38  Identities=29%  Similarity=0.425  Sum_probs=25.5

Q ss_pred             cCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCCC
Q 031020           89 LDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDG  147 (167)
Q Consensus        89 ~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~g  147 (167)
                      |||++|||+|               +.++.+..+|.  .++.+  -..  ++-+++|.+
T Consensus         1 pd~~~lyv~~---------------~~~~~v~~id~--~~~~~--~~~--i~vg~~P~~   38 (42)
T TIGR02276         1 PDGTKLYVTN---------------SGSNTVSVIDT--ATNKV--IAT--IPVGGYPFG   38 (42)
T ss_pred             CCCCEEEEEe---------------CCCCEEEEEEC--CCCeE--EEE--EECCCCCce
Confidence            6899999999               34667777766  55543  222  555777665

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PRK01742 tolB translocation protein TolB; Provisional

Probab=96.01  E-value=0.072  Score=47.42  Aligned_cols=30  Identities=23%  Similarity=0.186  Sum_probs=21.7

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEec
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNI   32 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDI   32 (167)
                      +....+.+||||++|+++....|.+..|.+
T Consensus       248 g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~  277 (429)
T PRK01742        248 GHNGAPAFSPDGSRLAFASSKDGVLNIYVM  277 (429)
T ss_pred             CccCceeECCCCCEEEEEEecCCcEEEEEE
Confidence            345578999999999988766666555543

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.00  E-value=0.064  Score=48.66  Aligned_cols=39  Identities=26%  Similarity=0.436  Sum_probs=33.7

Q ss_pred             EEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCc
Q 031020            7 DFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGG   48 (167)
Q Consensus         7 dI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG   48 (167)
                      +++||  |++-||++|.. -+..-||++|.+|+|+|...+|+
T Consensus       176 ~v~IS--Gn~AYvA~~d~-GL~ivDVSnp~sPvli~~~n~g~  214 (370)
T COG5276         176 DVAIS--GNYAYVAWRDG-GLTIVDVSNPHSPVLIGSYNTGP  214 (370)
T ss_pred             eEEEe--cCeEEEEEeCC-CeEEEEccCCCCCeEEEEEecCC
Confidence            66776  78999999965 56789999999999999999984

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=95.96  E-value=0.15  Score=38.06  Aligned_cols=61  Identities=18%  Similarity=0.290  Sum_probs=43.9

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      ..++.+.+++++++|+++. ..+.|..||+..   .+....+....                               +..
T Consensus       136 ~~i~~~~~~~~~~~l~~~~-~~~~i~i~d~~~---~~~~~~~~~~~-------------------------------~~i  180 (289)
T cd00200         136 DWVNSVAFSPDGTFVASSS-QDGTIKLWDLRT---GKCVATLTGHT-------------------------------GEV  180 (289)
T ss_pred             CcEEEEEEcCcCCEEEEEc-CCCcEEEEEccc---cccceeEecCc-------------------------------ccc
Confidence            3578999999999988876 478999999863   33333332111                               127


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      ..+.++++|++|+++.
T Consensus       181 ~~~~~~~~~~~l~~~~  196 (289)
T cd00200         181 NSVAFSPDGEKLLSSS  196 (289)
T ss_pred             ceEEECCCcCEEEEec
Confidence            7889999999988887

>PRK03629 tolB translocation protein TolB; Provisional

Probab=95.95  E-value=0.073  Score=47.65  Aligned_cols=31  Identities=16%  Similarity=0.050  Sum_probs=23.7

Q ss_pred             CceeEEEEecCCCEEEEEeCCCC--cEEEEecc
Q 031020            3 GLITDFLISLDDRFLYFSNWLHG--DIRQYNIE   33 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg--~I~qyDIs   33 (167)
                      +...+..+||||++|+++.+..|  +|+.||+.
T Consensus       243 ~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~  275 (429)
T PRK03629        243 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA  275 (429)
T ss_pred             CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            44567899999999998766555  58888875

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=95.86  E-value=0.014  Score=42.86  Aligned_cols=31  Identities=26%  Similarity=0.448  Sum_probs=28.2

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      ++..|.+|+|+|+||||.-....|.+|.+.+
T Consensus        55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~   85 (86)
T PF01731_consen   55 FANGIAISPDKKYLYVASSLAHSIHVYKRHK   85 (86)
T ss_pred             CCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence            4678999999999999999999999999764

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=95.80  E-value=0.05  Score=51.27  Aligned_cols=63  Identities=22%  Similarity=0.327  Sum_probs=46.9

Q ss_pred             CCCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCC
Q 031020            1 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG   80 (167)
Q Consensus         1 ~p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g   80 (167)
                      |+|.++++.+|.|+|.||+|| +.|.|++||+..+   +..-+.--.|.+                          +   
T Consensus       343 ieG~v~~~~fsSdsk~l~~~~-~~GeV~v~nl~~~---~~~~rf~D~G~v--------------------------~---  389 (514)
T KOG2055|consen  343 IEGVVSDFTFSSDSKELLASG-GTGEVYVWNLRQN---SCLHRFVDDGSV--------------------------H---  389 (514)
T ss_pred             eccEEeeEEEecCCcEEEEEc-CCceEEEEecCCc---ceEEEEeecCcc--------------------------c---
Confidence            578999999999999999999 6789999998863   443333333422                          2   


Q ss_pred             CCceEEEccCCCEEEEE
Q 031020           81 GPQMIQLSLDGKRLYVT   97 (167)
Q Consensus        81 ~P~~~~LS~DGkrLyVa   97 (167)
                       -..+++|++|.+|-+.
T Consensus       390 -gts~~~S~ng~ylA~G  405 (514)
T KOG2055|consen  390 -GTSLCISLNGSYLATG  405 (514)
T ss_pred             -eeeeeecCCCceEEec
Confidence             4568999999955443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=95.74  E-value=0.12  Score=44.39  Aligned_cols=30  Identities=17%  Similarity=0.133  Sum_probs=22.3

Q ss_pred             eeEEEEecCCCEEEEEeCCC--CcEEEEeccC
Q 031020            5 ITDFLISLDDRFLYFSNWLH--GDIRQYNIED   34 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~h--g~I~qyDIsd   34 (167)
                      +....+||||++|+.+.+..  ..|.+||+..
T Consensus       192 ~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~  223 (417)
T TIGR02800       192 ILSPAWSPDGQKLAYVSFESGKPEIYVQDLAT  223 (417)
T ss_pred             eecccCCCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            44567899999998877654  4688888764

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01742 tolB translocation protein TolB; Provisional

Probab=95.71  E-value=0.093  Score=46.70  Aligned_cols=31  Identities=10%  Similarity=0.087  Sum_probs=21.7

Q ss_pred             ceeEEEEecCCCEEEEEeCCC--CcEEEEeccC
Q 031020            4 LITDFLISLDDRFLYFSNWLH--GDIRQYNIED   34 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~h--g~I~qyDIsd   34 (167)
                      .+.....||||+.|+.+.+.+  ..|+.+|+..
T Consensus       205 ~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~t  237 (429)
T PRK01742        205 PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRS  237 (429)
T ss_pred             ccccceEcCCCCEEEEEEecCCCcEEEEEeCCC
Confidence            356788999999886554443  3688888753

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=95.69  E-value=0.044  Score=50.13  Aligned_cols=61  Identities=20%  Similarity=0.230  Sum_probs=46.4

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCC---CCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDP---KNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG   80 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp---~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g   80 (167)
                      -+|++.+|.|||+| +++-+++.|+.|++.|=   +|--+...|..+                             +   
T Consensus        88 ~vt~~~FsSdGK~l-at~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d-----------------------------h---  134 (420)
T KOG2096|consen   88 EVTDVAFSSDGKKL-ATISGDRSIRLWDVRDFENKEHRCIRQNVEYD-----------------------------H---  134 (420)
T ss_pred             ceeeeEEcCCCcee-EEEeCCceEEEEecchhhhhhhhHhhccccCC-----------------------------C---
Confidence            47999999999999 56668999999999982   222223333332                             3   


Q ss_pred             CCceEEEccCCCEEEEEe
Q 031020           81 GPQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        81 ~P~~~~LS~DGkrLyVaN   98 (167)
                       |-.+.++||-+-+.|+.
T Consensus       135 -pT~V~FapDc~s~vv~~  151 (420)
T KOG2096|consen  135 -PTRVVFAPDCKSVVVSV  151 (420)
T ss_pred             -ceEEEECCCcceEEEEE
Confidence             99999999999998887

>PRK02889 tolB translocation protein TolB; Provisional

Probab=95.65  E-value=0.095  Score=46.70  Aligned_cols=30  Identities=13%  Similarity=0.045  Sum_probs=21.5

Q ss_pred             eeEEEEecCCCEEEEEeCCC--CcEEEEeccC
Q 031020            5 ITDFLISLDDRFLYFSNWLH--GDIRQYNIED   34 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~h--g~I~qyDIsd   34 (167)
                      +....+||||+.|+++....  ..|+.||+..
T Consensus       198 v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~  229 (427)
T PRK02889        198 IISPAWSPDGTKLAYVSFESKKPVVYVHDLAT  229 (427)
T ss_pred             cccceEcCCCCEEEEEEccCCCcEEEEEECCC
Confidence            45678999999886554333  4589899864

>PRK04792 tolB translocation protein TolB; Provisional

Probab=95.52  E-value=0.17  Score=45.65  Aligned_cols=29  Identities=24%  Similarity=0.202  Sum_probs=19.7

Q ss_pred             eeEEEEecCCCEEEEEeCCCC--cEEEEecc
Q 031020            5 ITDFLISLDDRFLYFSNWLHG--DIRQYNIE   33 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg--~I~qyDIs   33 (167)
                      .+...+|+|+++|+++....+  .|.++|+.
T Consensus       308 ~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~  338 (448)
T PRK04792        308 DTEPSWHPDGKSLIFTSERGGKPQIYRVNLA  338 (448)
T ss_pred             ccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence            456789999999977765444  45555544

>PRK01029 tolB translocation protein TolB; Provisional

Probab=95.48  E-value=0.16  Score=45.83  Aligned_cols=17  Identities=24%  Similarity=0.284  Sum_probs=13.6

Q ss_pred             CceEEEccCCCEEEEEe
Q 031020           82 PQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaN   98 (167)
                      ....++||||++|+.+.
T Consensus       329 ~~~p~wSPDG~~Laf~~  345 (428)
T PRK01029        329 SSCPAWSPDGKKIAFCS  345 (428)
T ss_pred             ccceeECCCCCEEEEEE
Confidence            34567999999998776

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=95.47  E-value=0.26  Score=36.76  Aligned_cols=31  Identities=26%  Similarity=0.385  Sum_probs=26.8

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      .-++.|.+|+++++|+++.. .|.|..|++..
T Consensus        10 ~~i~~~~~~~~~~~l~~~~~-~g~i~i~~~~~   40 (289)
T cd00200          10 GGVTCVAFSPDGKLLATGSG-DGTIKVWDLET   40 (289)
T ss_pred             CCEEEEEEcCCCCEEEEeec-CcEEEEEEeeC
Confidence            45789999999999988875 78999999875

>PRK03629 tolB translocation protein TolB; Provisional

Probab=95.36  E-value=0.2  Score=44.81  Aligned_cols=17  Identities=29%  Similarity=0.321  Sum_probs=14.0

Q ss_pred             CceEEEccCCCEEEEEe
Q 031020           82 PQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaN   98 (167)
                      .....+||||++|+.++
T Consensus       333 ~~~~~~SpDG~~Ia~~~  349 (429)
T PRK03629        333 NQDADVSSDGKFMVMVS  349 (429)
T ss_pred             ccCEEECCCCCEEEEEE
Confidence            45678999999998876

>PRK00178 tolB translocation protein TolB; Provisional

Probab=95.28  E-value=0.14  Score=44.91  Aligned_cols=32  Identities=25%  Similarity=0.168  Sum_probs=23.0

Q ss_pred             CceeEEEEecCCCEEEEEeCCCC--cEEEEeccC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHG--DIRQYNIED   34 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg--~I~qyDIsd   34 (167)
                      +......+||||++|+++....|  +|.+||+..
T Consensus       243 g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~  276 (430)
T PRK00178        243 GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS  276 (430)
T ss_pred             CCcCCeEECCCCCEEEEEEccCCCceEEEEECCC
Confidence            34456789999999987665444  688888654

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=95.27  E-value=0.081  Score=52.74  Aligned_cols=61  Identities=23%  Similarity=0.334  Sum_probs=47.2

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .-++|+.+|+|||||-.++ +++.|+.|||-.   ..++.-+-+--                                -+
T Consensus       577 nritd~~FS~DgrWlisas-mD~tIr~wDlpt---~~lID~~~vd~--------------------------------~~  620 (910)
T KOG1539|consen  577 NRITDMTFSPDGRWLISAS-MDSTIRTWDLPT---GTLIDGLLVDS--------------------------------PC  620 (910)
T ss_pred             cceeeeEeCCCCcEEEEee-cCCcEEEEeccC---cceeeeEecCC--------------------------------cc
Confidence            3489999999999997666 789999999753   45555444322                                27


Q ss_pred             ceEEEccCCCEEEEEeC
Q 031020           83 QMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNs   99 (167)
                      -.+.+||.|.+|-++..
T Consensus       621 ~sls~SPngD~LAT~Hv  637 (910)
T KOG1539|consen  621 TSLSFSPNGDFLATVHV  637 (910)
T ss_pred             eeeEECCCCCEEEEEEe
Confidence            78999999999988874

>PRK04792 tolB translocation protein TolB; Provisional

Probab=95.23  E-value=0.18  Score=45.59  Aligned_cols=31  Identities=23%  Similarity=0.155  Sum_probs=21.1

Q ss_pred             CceeEEEEecCCCEEEEEeCCCC--cEEEEecc
Q 031020            3 GLITDFLISLDDRFLYFSNWLHG--DIRQYNIE   33 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg--~I~qyDIs   33 (167)
                      +......+||||++|+++....|  +|..+|+.
T Consensus       262 g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~  294 (448)
T PRK04792        262 GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA  294 (448)
T ss_pred             CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence            33456789999999987654444  47777764

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.15  E-value=0.19  Score=44.29  Aligned_cols=29  Identities=21%  Similarity=0.429  Sum_probs=26.5

Q ss_pred             eEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            6 TDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         6 tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      =.|++|||+|.||++-...+.|..|+...
T Consensus       166 NGla~SpDg~tly~aDT~~~~i~r~~~d~  194 (307)
T COG3386         166 NGLAFSPDGKTLYVADTPANRIHRYDLDP  194 (307)
T ss_pred             CceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence            35899999999999999999999999874

>PRK04922 tolB translocation protein TolB; Provisional

Probab=95.14  E-value=0.19  Score=44.67  Aligned_cols=33  Identities=21%  Similarity=0.177  Sum_probs=23.4

Q ss_pred             CCceeEEEEecCCCEEEEEeCCCC--cEEEEeccC
Q 031020            2 PGLITDFLISLDDRFLYFSNWLHG--DIRQYNIED   34 (167)
Q Consensus         2 p~l~tdI~IS~DdRfLYVSnw~hg--~I~qyDIsd   34 (167)
                      ++......+||||++|+++...+|  +|..||+..
T Consensus       247 ~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~  281 (433)
T PRK04922        247 RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGS  281 (433)
T ss_pred             CCCccCceECCCCCEEEEEEeCCCCceEEEEECCC
Confidence            344457789999999987655444  588888653

>PRK04922 tolB translocation protein TolB; Provisional

Probab=95.07  E-value=0.3  Score=43.47  Aligned_cols=29  Identities=21%  Similarity=0.213  Sum_probs=18.2

Q ss_pred             eeEEEEecCCCEEEEEeCCCC--cEEEEecc
Q 031020            5 ITDFLISLDDRFLYFSNWLHG--DIRQYNIE   33 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg--~I~qyDIs   33 (167)
                      .+...+|+||++|+++.-..|  .|.++++.
T Consensus       294 ~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~  324 (433)
T PRK04922        294 DTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS  324 (433)
T ss_pred             ccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence            356789999998765542233  45555543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=94.99  E-value=0.21  Score=44.52  Aligned_cols=31  Identities=23%  Similarity=0.170  Sum_probs=20.4

Q ss_pred             CCceeEEEEecCCCEEEEEeCCCCcEEEEec
Q 031020            2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNI   32 (167)
Q Consensus         2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDI   32 (167)
                      ++.......||||+.|+++....|....|.+
T Consensus       239 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  269 (427)
T PRK02889        239 KGSNSAPAWSPDGRTLAVALSRDGNSQIYTV  269 (427)
T ss_pred             CCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence            3445678899999999876544555444443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=94.68  E-value=0.16  Score=46.01  Aligned_cols=69  Identities=25%  Similarity=0.361  Sum_probs=46.0

Q ss_pred             CCCEEEEEeC----CCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEEc
Q 031020           13 DDRFLYFSNW----LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLS   88 (167)
Q Consensus        13 DdRfLYVSnw----~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS   88 (167)
                      |-+.+||.-=    +-+.|.+||   ..+.|+.|.|.+|= +                               |+ +.+|
T Consensus         1 ~~~rvyV~D~~~~~~~~rv~viD---~d~~k~lGmi~~g~-~-------------------------------~~-~~~s   44 (342)
T PF06433_consen    1 DAHRVYVQDPVFFHMTSRVYVID---ADSGKLLGMIDTGF-L-------------------------------GN-VALS   44 (342)
T ss_dssp             -TTEEEEEE-GGGGSSEEEEEEE---TTTTEEEEEEEEES-S-------------------------------EE-EEE-
T ss_pred             CCcEEEEECCccccccceEEEEE---CCCCcEEEEeeccc-C-------------------------------Cc-eeEC
Confidence            4577888654    224566666   55699999999864 1                               55 6799


Q ss_pred             cCCCEEEEEeCCCcccccccccccc--ccCcEEEEEEee
Q 031020           89 LDGKRLYVTNSLFSAWDCQFYPELK--EKGSHMLQIDVN  125 (167)
Q Consensus        89 ~DGkrLyVaNsl~s~wD~Qfyp~~~--~~g~~~~~~dvD  125 (167)
                      +|||.+|+++.        ||..+.  ++.+.+..+|..
T Consensus        45 pdgk~~y~a~T--------~~sR~~rG~RtDvv~~~D~~   75 (342)
T PF06433_consen   45 PDGKTIYVAET--------FYSRGTRGERTDVVEIWDTQ   75 (342)
T ss_dssp             TTSSEEEEEEE--------EEEETTEEEEEEEEEEEETT
T ss_pred             CCCCEEEEEEE--------EEeccccccceeEEEEEecC
Confidence            99999999995        554443  345666666664

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=94.58  E-value=0.45  Score=41.34  Aligned_cols=79  Identities=20%  Similarity=0.269  Sum_probs=48.2

Q ss_pred             EEEEecCCCEEEEEeCC-----CCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            7 DFLISLDDRFLYFSNWL-----HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         7 dI~IS~DdRfLYVSnw~-----hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      .|++..|+.|+..+-..     +-.|+.|+..    .++...+.+-..+                .|..-..++++...|
T Consensus        89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~----G~~~~~~~vP~~~----------------~~~~~~~~~~~~N~G  148 (326)
T PF13449_consen   89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD----GRVIRRFPVPAAF----------------LPDANGTSGRRNNRG  148 (326)
T ss_pred             HeEEecCCCEEEEeCCccCCCCCCEEEEECCC----CcccceEcccccc----------------ccccCccccccCCCC
Confidence            47776677655444443     1688888843    3334444332211                111111156677889


Q ss_pred             CceEEEccCCCEEEEEeCCCcccccc
Q 031020           82 PQMIQLSLDGKRLYVTNSLFSAWDCQ  107 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaNsl~s~wD~Q  107 (167)
                      .+-|++++||++||++.+  ++|...
T Consensus       149 ~E~la~~~dG~~l~~~~E--~~l~~d  172 (326)
T PF13449_consen  149 FEGLAVSPDGRTLFAAME--SPLKQD  172 (326)
T ss_pred             eEEEEECCCCCEEEEEEC--ccccCC
Confidence            999999999999999997  555443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=94.47  E-value=0.25  Score=43.92  Aligned_cols=33  Identities=24%  Similarity=0.221  Sum_probs=22.3

Q ss_pred             CCceeEEEEecCCCEEEEEeCCC--CcEEEEeccC
Q 031020            2 PGLITDFLISLDDRFLYFSNWLH--GDIRQYNIED   34 (167)
Q Consensus         2 p~l~tdI~IS~DdRfLYVSnw~h--g~I~qyDIsd   34 (167)
                      ++.+....+||||+.|+++....  .+|.++|+..
T Consensus       245 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~  279 (435)
T PRK05137        245 PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS  279 (435)
T ss_pred             CCcccCcEECCCCCEEEEEEecCCCceEEEEECCC
Confidence            34456678999999987665433  4577777653

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=94.44  E-value=0.14  Score=37.91  Aligned_cols=57  Identities=23%  Similarity=0.394  Sum_probs=36.5

Q ss_pred             EEEEecCCCEEEEEeC-----------------CCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCC
Q 031020            7 DFLISLDDRFLYFSNW-----------------LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSD   69 (167)
Q Consensus         7 dI~IS~DdRfLYVSnw-----------------~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~   69 (167)
                      |+.|+.|+..+|++.-                 .+|.+..||.+   +.+.  +|-+.|..                   
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~---t~~~--~vl~~~L~-------------------   57 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPS---TKET--TVLLDGLY-------------------   57 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETT---TTEE--EEEEEEES-------------------
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECC---CCeE--EEehhCCC-------------------
Confidence            7889999889999864                 45778888844   3332  13333321                   


Q ss_pred             CccccCccCCCCCceEEEccCCCEEEEEe
Q 031020           70 VPEVQGHRLRGGPQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        70 ~~~~~g~~~~g~P~~~~LS~DGkrLyVaN   98 (167)
                                 .|+-++||+||..|+||=
T Consensus        58 -----------fpNGVals~d~~~vlv~E   75 (89)
T PF03088_consen   58 -----------FPNGVALSPDESFVLVAE   75 (89)
T ss_dssp             -----------SEEEEEE-TTSSEEEEEE
T ss_pred             -----------ccCeEEEcCCCCEEEEEe
Confidence                       299999999999999986

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=94.40  E-value=0.55  Score=41.24  Aligned_cols=29  Identities=28%  Similarity=0.334  Sum_probs=18.3

Q ss_pred             eeEEEEecCCCEEEEEe-CC-CCcEEEEecc
Q 031020            5 ITDFLISLDDRFLYFSN-WL-HGDIRQYNIE   33 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSn-w~-hg~I~qyDIs   33 (167)
                      .+....|+||++||++. +. ...|..+++.
T Consensus       289 ~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~  319 (430)
T PRK00178        289 DTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN  319 (430)
T ss_pred             cCCeEECCCCCEEEEEECCCCCceEEEEECC
Confidence            34567899999876554 32 3356666654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=94.24  E-value=0.33  Score=43.81  Aligned_cols=30  Identities=17%  Similarity=0.153  Sum_probs=21.7

Q ss_pred             eeEEEEecCCCEEEEEeCC--CCcEEEEeccC
Q 031020            5 ITDFLISLDDRFLYFSNWL--HGDIRQYNIED   34 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~--hg~I~qyDIsd   34 (167)
                      .+....||||++|+++...  ...|.+||+..
T Consensus       329 ~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~  360 (428)
T PRK01029        329 SSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT  360 (428)
T ss_pred             ccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            3567899999998876543  34688888653

>PTZ00420 coronin; Provisional

Probab=94.19  E-value=0.61  Score=44.52  Aligned_cols=60  Identities=15%  Similarity=0.078  Sum_probs=44.2

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -++.|.++|+++.+.+|+-..+.|+.||+..   .+.+-++..++                                ...
T Consensus       127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~t---g~~~~~i~~~~--------------------------------~V~  171 (568)
T PTZ00420        127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIEN---EKRAFQINMPK--------------------------------KLS  171 (568)
T ss_pred             cEEEEEECCCCCeEEEEEeCCCeEEEEECCC---CcEEEEEecCC--------------------------------cEE
Confidence            3678999999999988877789999999875   22322232111                                166


Q ss_pred             eEEEccCCCEEEEEe
Q 031020           84 MIQLSLDGKRLYVTN   98 (167)
Q Consensus        84 ~~~LS~DGkrLyVaN   98 (167)
                      -+++|+||+.|.++.
T Consensus       172 SlswspdG~lLat~s  186 (568)
T PTZ00420        172 SLKWNIKGNLLSGTC  186 (568)
T ss_pred             EEEECCCCCEEEEEe
Confidence            788999999987765

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=94.11  E-value=0.81  Score=40.89  Aligned_cols=102  Identities=21%  Similarity=0.255  Sum_probs=63.6

Q ss_pred             CCCceeEEEEec-CCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCC
Q 031020            1 MPGLITDFLISL-DDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR   79 (167)
Q Consensus         1 ~p~l~tdI~IS~-DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~   79 (167)
                      ||.-.=+++++| +.+.+.++-|--.-..+||...   .++...+....                          ||++.
T Consensus         3 lP~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~---g~~~~~~~a~~--------------------------gRHFy   53 (305)
T PF07433_consen    3 LPARGHGVAAHPTRPEAVAFARRPGTFALVFDCRT---GQLLQRLWAPP--------------------------GRHFY   53 (305)
T ss_pred             CCccccceeeCCCCCeEEEEEeCCCcEEEEEEcCC---CceeeEEcCCC--------------------------CCEEe
Confidence            466667899999 6777777777666778888543   55555555432                          23322


Q ss_pred             CCCceEEEccCCCEEEEEeCCCccccccccccccccC-cEEEEEEeeCCCCCeeecCceeEeccCCCCCCcceeeeec
Q 031020           80 GGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKG-SHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRY  156 (167)
Q Consensus        80 g~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g-~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~gp~~~he~r~  156 (167)
                      |   .=.+|+||++||+|=.        .|    +.| +.|-..|+.   .++..-..|    .  -.| +=+|||++
T Consensus        54 G---Hg~fs~dG~~LytTEn--------d~----~~g~G~IgVyd~~---~~~~ri~E~----~--s~G-IGPHel~l  106 (305)
T PF07433_consen   54 G---HGVFSPDGRLLYTTEN--------DY----ETGRGVIGVYDAA---RGYRRIGEF----P--SHG-IGPHELLL  106 (305)
T ss_pred             c---CEEEcCCCCEEEEecc--------cc----CCCcEEEEEEECc---CCcEEEeEe----c--CCC-cChhhEEE
Confidence            2   2479999999999863        22    233 355557773   455444444    1  222 56899975

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=93.75  E-value=0.66  Score=39.90  Aligned_cols=29  Identities=17%  Similarity=0.200  Sum_probs=21.6

Q ss_pred             eeEEEEecCCCEEEEEeCCCC--cEEEEecc
Q 031020            5 ITDFLISLDDRFLYFSNWLHG--DIRQYNIE   33 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg--~I~qyDIs   33 (167)
                      .+.+.+|+||++|++++...+  .|..||+.
T Consensus       324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~  354 (417)
T TIGR02800       324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLD  354 (417)
T ss_pred             ccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence            356789999999999887654  56666654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.74  E-value=1.1  Score=39.44  Aligned_cols=17  Identities=18%  Similarity=0.387  Sum_probs=14.8

Q ss_pred             CCceEEEccCCCEEEEEeC
Q 031020           81 GPQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        81 ~P~~~~LS~DGkrLyVaNs   99 (167)
                      .|+.+.+.++|  |||++.
T Consensus        73 ~p~Gi~~~~~G--lyV~~~   89 (367)
T TIGR02604        73 MVTGLAVAVGG--VYVATP   89 (367)
T ss_pred             CccceeEecCC--EEEeCC
Confidence            39999999999  999974

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=93.55  E-value=0.18  Score=29.83  Aligned_cols=31  Identities=16%  Similarity=0.311  Sum_probs=27.7

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      .+..|+++++++.||.+.+..+.|.+++++.
T Consensus        10 ~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g   40 (43)
T smart00135       10 HPNGLAVDWIEGRLYWTDWGLDVIEVANLDG   40 (43)
T ss_pred             CcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence            3567999999999999999999999999864

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=93.51  E-value=1.7  Score=35.10  Aligned_cols=58  Identities=16%  Similarity=0.098  Sum_probs=42.1

Q ss_pred             ceeEEEEecCCCEEEEEe-CCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            4 LITDFLISLDDRFLYFSN-WLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSn-w~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      -+.++.-||+++.+.|.. -....|..||+.    .+.+.++..+                             .    .
T Consensus        61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~----~~~i~~~~~~-----------------------------~----~  103 (194)
T PF08662_consen   61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK----GKKIFSFGTQ-----------------------------P----R  103 (194)
T ss_pred             ceEEEEECcCCCEEEEEEccCCcccEEEcCc----ccEeEeecCC-----------------------------C----c
Confidence            388999999998877664 345689999984    3344333211                             1    5


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      +.+..||+|++|.++.
T Consensus       104 n~i~wsP~G~~l~~~g  119 (194)
T PF08662_consen  104 NTISWSPDGRFLVLAG  119 (194)
T ss_pred             eEEEECCCCCEEEEEE
Confidence            6789999999999985

>PRK04043 tolB translocation protein TolB; Provisional

Probab=93.49  E-value=0.69  Score=41.88  Aligned_cols=28  Identities=14%  Similarity=0.040  Sum_probs=20.1

Q ss_pred             eEEEEecCCCE-EE-EEeC-CCCcEEEEecc
Q 031020            6 TDFLISLDDRF-LY-FSNW-LHGDIRQYNIE   33 (167)
Q Consensus         6 tdI~IS~DdRf-LY-VSnw-~hg~I~qyDIs   33 (167)
                      ..-..||||+. +| +|+. ...+|.++|+.
T Consensus       191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~  221 (419)
T PRK04043        191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLY  221 (419)
T ss_pred             EeEEECCCCCcEEEEEEccCCCCEEEEEECC
Confidence            34578999984 55 5776 36789988875

>PRK04043 tolB translocation protein TolB; Provisional

Probab=93.33  E-value=1.1  Score=40.54  Aligned_cols=31  Identities=23%  Similarity=0.234  Sum_probs=20.8

Q ss_pred             CceeEEEEecCCCEEEEEeCC--CCcEEEEecc
Q 031020            3 GLITDFLISLDDRFLYFSNWL--HGDIRQYNIE   33 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~--hg~I~qyDIs   33 (167)
                      +....-.+||||+.|.++--.  ..+|..+|+.
T Consensus       233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~  265 (419)
T PRK04043        233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN  265 (419)
T ss_pred             CcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence            444556789999988766433  3467777764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=93.24  E-value=1  Score=40.07  Aligned_cols=30  Identities=17%  Similarity=0.045  Sum_probs=19.9

Q ss_pred             ceeEEEEecCCCEEEEEeCC--CCcEEEEecc
Q 031020            4 LITDFLISLDDRFLYFSNWL--HGDIRQYNIE   33 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~--hg~I~qyDIs   33 (167)
                      ..+....||||++|+++.-.  ...|.++|++
T Consensus       291 ~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~  322 (435)
T PRK05137        291 IDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD  322 (435)
T ss_pred             ccCceeEcCCCCEEEEEECCCCCCeEEEEECC
Confidence            34567889999987665432  3467777754

>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats

Probab=92.97  E-value=0.93  Score=42.70  Aligned_cols=40  Identities=15%  Similarity=0.303  Sum_probs=34.5

Q ss_pred             eEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCc
Q 031020            6 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGG   48 (167)
Q Consensus         6 tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG   48 (167)
                      +||.= -||++||+.+  .+.|...|+.+++..+++++|...|
T Consensus        15 aDiVK-TDG~yIY~v~--~~~l~Iida~p~~~~~~~s~I~~~~   54 (521)
T PF09826_consen   15 ADIVK-TDGEYIYVVS--GGRLYIIDAYPAEEMKVVSRIDLDG   54 (521)
T ss_pred             CcEEE-ECCCEEEEEe--CCEEEEEECCCchhceEEEEEecCC
Confidence            45544 5999999999  6999999998888999999999887

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.76  E-value=0.99  Score=40.91  Aligned_cols=62  Identities=19%  Similarity=0.207  Sum_probs=46.8

Q ss_pred             CCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      +..++.+.+++++ -+.+|+-..+.|+.||+..   .+.+..+....                               ++
T Consensus       246 ~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~---~~~~~~l~~hs-------------------------------~~  290 (456)
T KOG0266|consen  246 STYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRT---GECVRKLKGHS-------------------------------DG  290 (456)
T ss_pred             CCceEEEEecCCC-CEEEEecCCCcEEEEeccC---CeEEEeeeccC-------------------------------Cc
Confidence            4678999999999 7779999999999999875   55555554322                               12


Q ss_pred             CceEEEccCCCEEEEEe
Q 031020           82 PQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaN   98 (167)
                      =.-+.+++||+.|.++.
T Consensus       291 is~~~f~~d~~~l~s~s  307 (456)
T KOG0266|consen  291 ISGLAFSPDGNLLVSAS  307 (456)
T ss_pred             eEEEEECCCCCEEEEcC
Confidence            44567899999888873

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=92.67  E-value=0.43  Score=45.86  Aligned_cols=41  Identities=20%  Similarity=0.140  Sum_probs=34.5

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEE
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIW   45 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~   45 (167)
                      +.|-++.+|+|||++-|+| ...+|+++||+ ..+++++.+-.
T Consensus       402 g~I~av~vs~dGK~~vvaN-dr~el~vidid-ngnv~~idkS~  442 (668)
T COG4946         402 GNIEAVKVSPDGKKVVVAN-DRFELWVIDID-NGNVRLIDKSE  442 (668)
T ss_pred             cceEEEEEcCCCcEEEEEc-CceEEEEEEec-CCCeeEecccc
Confidence            4577899999999999999 57899999998 57888876644

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=92.62  E-value=1.1  Score=40.32  Aligned_cols=76  Identities=16%  Similarity=0.110  Sum_probs=50.9

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      .++|.+|+|||+|-+|. .++-|...|-=   ...+...+..--                        .+++-    |-+
T Consensus       190 w~~l~FS~dGK~iLlsT-~~s~~~~lDAf---~G~~~~tfs~~~------------------------~~~~~----~~~  237 (311)
T KOG1446|consen  190 WTDLEFSPDGKSILLST-NASFIYLLDAF---DGTVKSTFSGYP------------------------NAGNL----PLS  237 (311)
T ss_pred             eeeeEEcCCCCEEEEEe-CCCcEEEEEcc---CCcEeeeEeecc------------------------CCCCc----cee
Confidence            48999999999999998 46778877633   344433332100                        01222    778


Q ss_pred             EEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCC
Q 031020           85 IQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGG  130 (167)
Q Consensus        85 ~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~  130 (167)
                      ..++|||++++.+-                +.+++...++  ++|.
T Consensus       238 a~ftPds~Fvl~gs----------------~dg~i~vw~~--~tg~  265 (311)
T KOG1446|consen  238 ATFTPDSKFVLSGS----------------DDGTIHVWNL--ETGK  265 (311)
T ss_pred             EEECCCCcEEEEec----------------CCCcEEEEEc--CCCc
Confidence            89999999999876                3456666777  5554

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.55  E-value=1.2  Score=39.15  Aligned_cols=46  Identities=13%  Similarity=0.097  Sum_probs=27.0

Q ss_pred             CCCceEEEccCCCEEEEEeCCCcc-c-cccccc--cccccCcEEEEEEeeC
Q 031020           80 GGPQMIQLSLDGKRLYVTNSLFSA-W-DCQFYP--ELKEKGSHMLQIDVNS  126 (167)
Q Consensus        80 g~P~~~~LS~DGkrLyVaNsl~s~-w-D~Qfyp--~~~~~g~~~~~~dvD~  126 (167)
                      ..|+.+++.+|| +||++..-.+. + .++--+  +....++.++++|.|.
T Consensus       124 ~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg  173 (367)
T TIGR02604       124 HSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG  173 (367)
T ss_pred             ccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceEEEEecCC
Confidence            358899999999 59998764322 1 000000  1112356888888764

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=92.54  E-value=0.66  Score=41.41  Aligned_cols=63  Identities=24%  Similarity=0.202  Sum_probs=45.6

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      +.+.-+++|||.|+|- .|-..-.+.+|.+++-  -|+.-++. ||                              .+|-
T Consensus       216 ~~il~C~lSPd~k~la-t~ssdktv~iwn~~~~--~kle~~l~-gh------------------------------~rWv  261 (311)
T KOG0315|consen  216 GHILRCLLSPDVKYLA-TCSSDKTVKIWNTDDF--FKLELVLT-GH------------------------------QRWV  261 (311)
T ss_pred             ceEEEEEECCCCcEEE-eecCCceEEEEecCCc--eeeEEEee-cC------------------------------CceE
Confidence            4578899999999995 4556779999998862  33332222 22                              1356


Q ss_pred             ceEEEccCCCEEEEEeC
Q 031020           83 QMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNs   99 (167)
                      =+.++|-||++|+-+.|
T Consensus       262 Wdc~FS~dg~YlvTass  278 (311)
T KOG0315|consen  262 WDCAFSADGEYLVTASS  278 (311)
T ss_pred             EeeeeccCccEEEecCC
Confidence            78899999999998875

>PRK13616 lipoprotein LpqB; Provisional

Probab=91.93  E-value=1.8  Score=41.44  Aligned_cols=21  Identities=33%  Similarity=0.321  Sum_probs=18.3

Q ss_pred             CCCCCceEEEccCCCEEEEEe
Q 031020           78 LRGGPQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        78 ~~g~P~~~~LS~DGkrLyVaN   98 (167)
                      +.+++..+++||||+||.+..
T Consensus       446 ~~g~Issl~wSpDG~RiA~i~  466 (591)
T PRK13616        446 VPGPISELQLSRDGVRAAMII  466 (591)
T ss_pred             cCCCcCeEEECCCCCEEEEEE
Confidence            356799999999999999876

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=91.89  E-value=1.5  Score=40.46  Aligned_cols=75  Identities=20%  Similarity=0.279  Sum_probs=49.0

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecC-CceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKG-SPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~-~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      +-+|.+++|+||..|--+.=-.--||+|.|.+   ..+.-      .|++| -+|+                        
T Consensus       174 ~~lAalafs~~G~llATASeKGTVIRVf~v~~---G~kl~------eFRRG~~~~~------------------------  220 (391)
T KOG2110|consen  174 GPLAALAFSPDGTLLATASEKGTVIRVFSVPE---GQKLY------EFRRGTYPVS------------------------  220 (391)
T ss_pred             CceeEEEECCCCCEEEEeccCceEEEEEEcCC---ccEee------eeeCCceeeE------------------------
Confidence            34789999999999966554444679999976   22222      22222 1111                        


Q ss_pred             CceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEe
Q 031020           82 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDV  124 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dv  124 (167)
                      ---+++|+|+++|-++.+              .+..+++|++-
T Consensus       221 IySL~Fs~ds~~L~~sS~--------------TeTVHiFKL~~  249 (391)
T KOG2110|consen  221 IYSLSFSPDSQFLAASSN--------------TETVHIFKLEK  249 (391)
T ss_pred             EEEEEECCCCCeEEEecC--------------CCeEEEEEecc
Confidence            234679999999998875              45667777654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=91.82  E-value=1.3  Score=40.23  Aligned_cols=30  Identities=27%  Similarity=0.480  Sum_probs=26.8

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      -++.+.+++|+++|..++. .+.|++||+..
T Consensus       290 ~is~~~f~~d~~~l~s~s~-d~~i~vwd~~~  319 (456)
T KOG0266|consen  290 GISGLAFSPDGNLLVSASY-DGTIRVWDLET  319 (456)
T ss_pred             ceEEEEECCCCCEEEEcCC-CccEEEEECCC
Confidence            4788999999999999976 99999999775

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=91.75  E-value=0.28  Score=47.28  Aligned_cols=57  Identities=25%  Similarity=0.428  Sum_probs=42.7

Q ss_pred             eEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceE
Q 031020            6 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMI   85 (167)
Q Consensus         6 tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~   85 (167)
                      -+++||||-|..|.|| -.|.|++||+.+   ..++.+..  |                             ...|-.-+
T Consensus       513 yALa~spDakvcFscc-sdGnI~vwDLhn---q~~Vrqfq--G-----------------------------htDGascI  557 (705)
T KOG0639|consen  513 YALAISPDAKVCFSCC-SDGNIAVWDLHN---QTLVRQFQ--G-----------------------------HTDGASCI  557 (705)
T ss_pred             hhhhcCCccceeeeec-cCCcEEEEEccc---ceeeeccc--C-----------------------------CCCCceeE
Confidence            4688999999886555 789999999876   56676654  3                             12346678


Q ss_pred             EEccCCCEEEEE
Q 031020           86 QLSLDGKRLYVT   97 (167)
Q Consensus        86 ~LS~DGkrLyVa   97 (167)
                      .+|.||.+|+..
T Consensus       558 dis~dGtklWTG  569 (705)
T KOG0639|consen  558 DISKDGTKLWTG  569 (705)
T ss_pred             EecCCCceeecC
Confidence            899999999854

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.27  E-value=0.65  Score=42.98  Aligned_cols=76  Identities=17%  Similarity=0.296  Sum_probs=52.5

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .|+.+.+|+|||||-+.. ..|+|+.|+..+-.....+-+...+                                 ---
T Consensus       283 siSsl~VS~dGkf~AlGT-~dGsVai~~~~~lq~~~~vk~aH~~---------------------------------~VT  328 (398)
T KOG0771|consen  283 SISSLAVSDDGKFLALGT-MDGSVAIYDAKSLQRLQYVKEAHLG---------------------------------FVT  328 (398)
T ss_pred             cceeEEEcCCCcEEEEec-cCCcEEEEEeceeeeeEeehhhhee---------------------------------eee
Confidence            478899999999999987 5999999997763222223333322                                 134


Q ss_pred             eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCC
Q 031020           84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSE  127 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~  127 (167)
                      .+++|||-+++--..+              .....++++-+|..
T Consensus       329 ~ltF~Pdsr~~~svSs--------------~~~~~v~~l~vd~~  358 (398)
T KOG0771|consen  329 GLTFSPDSRYLASVSS--------------DNEAAVTKLAVDKT  358 (398)
T ss_pred             eEEEcCCcCccccccc--------------CCceeEEEEeeccc
Confidence            5788998888766443              44667888888743

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=90.51  E-value=0.57  Score=42.52  Aligned_cols=63  Identities=19%  Similarity=0.294  Sum_probs=44.1

Q ss_pred             ceeEEEEecCCCEEE-EEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            4 LITDFLISLDDRFLY-FSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         4 l~tdI~IS~DdRfLY-VSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      -|++|.+||...+|. .+.| .|.||.|+|.+.+...-..+....|                                -+
T Consensus        29 sIS~l~FSP~~~~~~~A~SW-D~tVR~wevq~~g~~~~ka~~~~~~--------------------------------Pv   75 (347)
T KOG0647|consen   29 SISALAFSPQADNLLAAGSW-DGTVRIWEVQNSGQLVPKAQQSHDG--------------------------------PV   75 (347)
T ss_pred             chheeEeccccCceEEeccc-CCceEEEEEecCCcccchhhhccCC--------------------------------Ce
Confidence            478999999766776 5555 7899999999742222222333333                                36


Q ss_pred             ceEEEccCCCEEEEEeC
Q 031020           83 QMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNs   99 (167)
                      =..+.|.||..+|.+..
T Consensus        76 L~v~WsddgskVf~g~~   92 (347)
T KOG0647|consen   76 LDVCWSDDGSKVFSGGC   92 (347)
T ss_pred             EEEEEccCCceEEeecc
Confidence            67889999999998874

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=90.31  E-value=1.1  Score=44.17  Aligned_cols=76  Identities=21%  Similarity=0.208  Sum_probs=53.3

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -++.+++||+|||| +|.--.|-|-.||+..   .+++.+..  |                            | .|---
T Consensus       579 ~V~al~~Sp~Gr~L-aSg~ed~~I~iWDl~~---~~~v~~l~--~----------------------------H-t~ti~  623 (707)
T KOG0263|consen  579 PVTALAFSPCGRYL-ASGDEDGLIKIWDLAN---GSLVKQLK--G----------------------------H-TGTIY  623 (707)
T ss_pred             ceEEEEEcCCCceE-eecccCCcEEEEEcCC---Ccchhhhh--c----------------------------c-cCcee
Confidence            47899999999999 7887899999999875   33433222  1                            0 12245


Q ss_pred             eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCC
Q 031020           84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGG  130 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~  130 (167)
                      -+.+|+||..|.++-.                +.++...|+...++.
T Consensus       624 SlsFS~dg~vLasgg~----------------DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  624 SLSFSRDGNVLASGGA----------------DNSVRLWDLTKVIEL  654 (707)
T ss_pred             EEEEecCCCEEEecCC----------------CCeEEEEEchhhccc
Confidence            6789999999999873                334444677655554

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=90.07  E-value=3.8  Score=35.40  Aligned_cols=32  Identities=16%  Similarity=0.443  Sum_probs=27.8

Q ss_pred             CceeEEEEecCC-----CEEEEEeCCCCcEEEEeccC
Q 031020            3 GLITDFLISLDD-----RFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         3 ~l~tdI~IS~Dd-----RfLYVSnw~hg~I~qyDIsd   34 (167)
                      .+..||+|....     .|.|++.-+.+.|.+||+.+
T Consensus        61 s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~   97 (287)
T PF03022_consen   61 SFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLAT   97 (287)
T ss_dssp             GGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTT
T ss_pred             cccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccC
Confidence            467899998833     69999999999999999986

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.03  E-value=1.1  Score=41.58  Aligned_cols=88  Identities=15%  Similarity=0.131  Sum_probs=58.9

Q ss_pred             CCCceeEEEEecC-CCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCC
Q 031020            1 MPGLITDFLISLD-DRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR   79 (167)
Q Consensus         1 ~p~l~tdI~IS~D-dRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~   79 (167)
                      +|-.++||.+-++ ..+-++.|-..+.+|.||+.-.  -+.+.++.....                              
T Consensus       201 VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q--RRPV~~fd~~E~------------------------------  248 (412)
T KOG3881|consen  201 VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ--RRPVAQFDFLEN------------------------------  248 (412)
T ss_pred             eeeeeccceecCCCCCceEEEEecceeEEEecCccc--CcceeEeccccC------------------------------
Confidence            4667888887554 4666777777789999997743  334555665441                              


Q ss_pred             CCCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEec
Q 031020           80 GGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDF  141 (167)
Q Consensus        80 g~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf  141 (167)
                       .--.+.|.|+|..+|++|.                -++|..||.  ..|  ++-.-|+=++
T Consensus       249 -~is~~~l~p~gn~Iy~gn~----------------~g~l~~FD~--r~~--kl~g~~~kg~  289 (412)
T KOG3881|consen  249 -PISSTGLTPSGNFIYTGNT----------------KGQLAKFDL--RGG--KLLGCGLKGI  289 (412)
T ss_pred             -cceeeeecCCCcEEEEecc----------------cchhheecc--cCc--eeeccccCCc
Confidence             1345679999999999994                457888888  444  3444444444

>PTZ00421 coronin; Provisional

Probab=89.81  E-value=3.3  Score=38.61  Aligned_cols=30  Identities=7%  Similarity=-0.054  Sum_probs=23.2

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      +..|.++|++..+.+|+-..+.|+.||+..
T Consensus       128 V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t  157 (493)
T PTZ00421        128 VGIVSFHPSAMNVLASAGADMVVNVWDVER  157 (493)
T ss_pred             EEEEEeCcCCCCEEEEEeCCCEEEEEECCC
Confidence            578999999755555555688999999875

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=89.64  E-value=1  Score=42.20  Aligned_cols=58  Identities=17%  Similarity=0.268  Sum_probs=42.7

Q ss_pred             eEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceE
Q 031020            6 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMI   85 (167)
Q Consensus         6 tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~   85 (167)
                      --..+|||++.| ||.-++..+|.||+. .++|-.+                               .||  ..-|-.-+
T Consensus       119 l~~~fsp~g~~l-~tGsGD~TvR~WD~~-TeTp~~t-------------------------------~Kg--H~~WVlcv  163 (480)
T KOG0271|consen  119 LSVQFSPTGSRL-VTGSGDTTVRLWDLD-TETPLFT-------------------------------CKG--HKNWVLCV  163 (480)
T ss_pred             EEEEecCCCceE-EecCCCceEEeeccC-CCCccee-------------------------------ecC--CccEEEEE
Confidence            346789999998 888899999999987 3444332                               111  12467888


Q ss_pred             EEccCCCEEEEEe
Q 031020           86 QLSLDGKRLYVTN   98 (167)
Q Consensus        86 ~LS~DGkrLyVaN   98 (167)
                      +.||||++|--..
T Consensus       164 awsPDgk~iASG~  176 (480)
T KOG0271|consen  164 AWSPDGKKIASGS  176 (480)
T ss_pred             EECCCcchhhccc
Confidence            9999999987665

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=89.62  E-value=8.5  Score=33.04  Aligned_cols=79  Identities=11%  Similarity=0.189  Sum_probs=50.9

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      +++|...+|.+.||+-+=..+.|..++.+    .++..++++.|.-                          .    |+.
T Consensus        24 ~SGLTy~pd~~tLfaV~d~~~~i~els~~----G~vlr~i~l~g~~--------------------------D----~Eg   69 (248)
T PF06977_consen   24 LSGLTYNPDTGTLFAVQDEPGEIYELSLD----GKVLRRIPLDGFG--------------------------D----YEG   69 (248)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETT------EEEEEE-SS-S--------------------------S----EEE
T ss_pred             ccccEEcCCCCeEEEEECCCCEEEEEcCC----CCEEEEEeCCCCC--------------------------C----cee
Confidence            58999999999999888778888877742    6788999998821                          3    888


Q ss_pred             EEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeee
Q 031020           85 IQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAI  133 (167)
Q Consensus        85 ~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l  133 (167)
                      ++..-+|+++.+ .               ++...++.++++..+..+..
T Consensus        70 I~y~g~~~~vl~-~---------------Er~~~L~~~~~~~~~~~~~~  102 (248)
T PF06977_consen   70 ITYLGNGRYVLS-E---------------ERDQRLYIFTIDDDTTSLDR  102 (248)
T ss_dssp             EEE-STTEEEEE-E---------------TTTTEEEEEEE----TT--E
T ss_pred             EEEECCCEEEEE-E---------------cCCCcEEEEEEeccccccch
Confidence            888766654443 3               24557778888766665543

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=89.61  E-value=2  Score=38.35  Aligned_cols=38  Identities=16%  Similarity=0.293  Sum_probs=27.6

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEe
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWV   46 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~   46 (167)
                      +-.+.|.-+| +|||++|..+.|..+|   |-+.|+.-++.+
T Consensus       214 PDGm~ID~eG-~L~Va~~ng~~V~~~d---p~tGK~L~eikl  251 (310)
T KOG4499|consen  214 PDGMTIDTEG-NLYVATFNGGTVQKVD---PTTGKILLEIKL  251 (310)
T ss_pred             CCcceEccCC-cEEEEEecCcEEEEEC---CCCCcEEEEEEc
Confidence            3445565544 8999999999999998   555777655543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=89.52  E-value=3.1  Score=40.23  Aligned_cols=23  Identities=22%  Similarity=0.213  Sum_probs=19.7

Q ss_pred             cCCCCCceEEEccCCCEEEEEeC
Q 031020           77 RLRGGPQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        77 ~~~g~P~~~~LS~DGkrLyVaNs   99 (167)
                      +.+|.+-.++.||||++|-++..
T Consensus       485 ~h~a~iT~vaySpd~~yla~~Da  507 (603)
T KOG0318|consen  485 EHRAAITDVAYSPDGAYLAAGDA  507 (603)
T ss_pred             cccCCceEEEECCCCcEEEEecc
Confidence            45667999999999999999874

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=89.49  E-value=1.4  Score=25.55  Aligned_cols=28  Identities=29%  Similarity=0.382  Sum_probs=23.9

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEe
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYN   31 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyD   31 (167)
                      ..+.+|.+++++++|..++ ..+.|++||
T Consensus        12 ~~i~~i~~~~~~~~~~s~~-~D~~i~vwd   39 (39)
T PF00400_consen   12 SSINSIAWSPDGNFLASGS-SDGTIRVWD   39 (39)
T ss_dssp             SSEEEEEEETTSSEEEEEE-TTSEEEEEE
T ss_pred             CcEEEEEEecccccceeeC-CCCEEEEEC
Confidence            4688999999999997777 578999987

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=89.22  E-value=1.2  Score=26.68  Aligned_cols=26  Identities=23%  Similarity=0.349  Sum_probs=17.7

Q ss_pred             CceeEEEEecCCCEEEEEeCCC--CcEE
Q 031020            3 GLITDFLISLDDRFLYFSNWLH--GDIR   28 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~h--g~I~   28 (167)
                      +.-....+|||||+||.+...+  |.-.
T Consensus         9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~d   36 (39)
T PF07676_consen    9 GDDGSPAWSPDGKYIYFTSNRNDRGSFD   36 (39)
T ss_dssp             SSEEEEEE-TTSSEEEEEEECT--SSEE
T ss_pred             ccccCEEEecCCCEEEEEecCCCCCCcC
Confidence            4456789999999887776655  5443

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=89.20  E-value=2.4  Score=40.04  Aligned_cols=85  Identities=19%  Similarity=0.139  Sum_probs=36.0

Q ss_pred             ecCCCEEEEEeCCCCcEEEEeccCCCC--CeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEEc
Q 031020           11 SLDDRFLYFSNWLHGDIRQYNIEDPKN--PVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLS   88 (167)
Q Consensus        11 S~DdRfLYVSnw~hg~I~qyDIsdp~~--pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS   88 (167)
                      .|+..+=||.|=+..+|+.|--++...  -+-+-+|+.             +.-|-+..|+..-.-| .+.+-+-++.||
T Consensus       255 ~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~-------------~~v~~~~lp~ml~~~~-~~P~LitDI~iS  320 (461)
T PF05694_consen  255 DPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA-------------KKVEGWILPEMLKPFG-AVPPLITDILIS  320 (461)
T ss_dssp             STT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE---------------EE--SS---GGGGGG--EE------EEE-
T ss_pred             CCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC-------------cccCcccccccccccc-cCCCceEeEEEc
Confidence            344667788888888888877543211  111112211             0112233343210001 123448889999


Q ss_pred             cCCCEEEEEeCCCccccccccccccccCcEEEEEEe
Q 031020           89 LDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDV  124 (167)
Q Consensus        89 ~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dv  124 (167)
                      +|.|+|||+|=               --+.+.|+||
T Consensus       321 lDDrfLYvs~W---------------~~GdvrqYDI  341 (461)
T PF05694_consen  321 LDDRFLYVSNW---------------LHGDVRQYDI  341 (461)
T ss_dssp             TTS-EEEEEET---------------TTTEEEEEE-
T ss_pred             cCCCEEEEEcc---------------cCCcEEEEec
Confidence            99999999992               2457888999

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=89.14  E-value=1.3  Score=42.79  Aligned_cols=65  Identities=17%  Similarity=0.158  Sum_probs=47.8

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCC-CCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPK-NPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~-~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      ++.-...|+-|--+++|-..|++|.||+.++. +.+++-....||.                           +  =-|.
T Consensus       271 lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~---------------------------R--v~~t  321 (641)
T KOG0772|consen  271 LTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK---------------------------R--VPVT  321 (641)
T ss_pred             eeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc---------------------------c--cCce
Confidence            45556789999999999999999999999864 3334444444441                           1  1288


Q ss_pred             eEEEccCCCEEEEEe
Q 031020           84 MIQLSLDGKRLYVTN   98 (167)
Q Consensus        84 ~~~LS~DGkrLyVaN   98 (167)
                      ..+.++||+++-.+.
T Consensus       322 sC~~nrdg~~iAagc  336 (641)
T KOG0772|consen  322 SCAWNRDGKLIAAGC  336 (641)
T ss_pred             eeecCCCcchhhhcc
Confidence            899999999976665

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=88.78  E-value=3.5  Score=40.44  Aligned_cols=34  Identities=24%  Similarity=0.428  Sum_probs=31.6

Q ss_pred             CCCceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            1 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         1 ~p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      ||...+.|.+|+||+||..+.=--=.|.+||+.+
T Consensus        50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan   83 (703)
T KOG2321|consen   50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN   83 (703)
T ss_pred             CccccceeEecCCCcEEEEecccCCceEEEEccc
Confidence            7999999999999999999988888999999875

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=88.72  E-value=0.96  Score=42.72  Aligned_cols=100  Identities=19%  Similarity=0.314  Sum_probs=55.4

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCC-ccccCccCCCCCc
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDV-PEVQGHRLRGGPQ   83 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~-~~~~g~~~~g~P~   83 (167)
                      ++-|..|||+||| ++|--...++.||++......+-.+- +|=+.           .-.-|-|+. ..     +.|+|+
T Consensus       272 V~yi~wSPDdryL-laCg~~e~~~lwDv~tgd~~~~y~~~-~~~S~-----------~sc~W~pDg~~~-----V~Gs~d  333 (519)
T KOG0293|consen  272 VSYIMWSPDDRYL-LACGFDEVLSLWDVDTGDLRHLYPSG-LGFSV-----------SSCAWCPDGFRF-----VTGSPD  333 (519)
T ss_pred             eEEEEECCCCCeE-EecCchHheeeccCCcchhhhhcccC-cCCCc-----------ceeEEccCCcee-----EecCCC
Confidence            5779999999999 66767788999998752221111111 11111           011133433 22     233342


Q ss_pred             --eEEEccCCCEEEEEeCCCcccccccccccc-----ccCcEEEEEEeeCCCC
Q 031020           84 --MIQLSLDGKRLYVTNSLFSAWDCQFYPELK-----EKGSHMLQIDVNSEKG  129 (167)
Q Consensus        84 --~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~-----~~g~~~~~~dvD~~~G  129 (167)
                        ..+.++||.-       ..+|.-+.=|...     .+|-.|+.+.+|++.-
T Consensus       334 r~i~~wdlDgn~-------~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~  379 (519)
T KOG0293|consen  334 RTIIMWDLDGNI-------LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIR  379 (519)
T ss_pred             CcEEEecCCcch-------hhcccccccceeEEEEEcCCCcEEEEEeccccee
Confidence              3456667664       3456666544331     3777888888776543

>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats

Probab=88.72  E-value=2.5  Score=39.90  Aligned_cols=51  Identities=18%  Similarity=0.148  Sum_probs=37.6

Q ss_pred             cEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEEccCCCEEEEEeC
Q 031020           26 DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        26 ~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS~DGkrLyVaNs   99 (167)
                      .|..|||+||.+||.+.++.+|+.-. .              .        .+..-++.|.++++-.+|.+.-+
T Consensus       403 KisLFDVSD~~~P~e~~~~~iG~~~s-~--------------S--------~a~~dhkAfl~~~~~~ll~~Pv~  453 (521)
T PF09826_consen  403 KISLFDVSDPANPKELDKEVIGDRGS-Y--------------S--------EALYDHKAFLFDKEKNLLAFPVS  453 (521)
T ss_pred             EEEEEecCCCCCccEeEEEEcCCCCc-c--------------C--------ccccCceEEEEeCCCCEEEEEEE
Confidence            48899999999999999999965211 0              0        12223888999998888877665

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=88.66  E-value=1.5  Score=25.73  Aligned_cols=19  Identities=26%  Similarity=0.303  Sum_probs=17.6

Q ss_pred             CCceEEEccCCCEEEEEeC
Q 031020           81 GPQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        81 ~P~~~~LS~DGkrLyVaNs   99 (167)
                      .|+.+++++++++||.+++
T Consensus        10 ~~~~la~d~~~~~lYw~D~   28 (43)
T smart00135       10 HPNGLAVDWIEGRLYWTDW   28 (43)
T ss_pred             CcCEEEEeecCCEEEEEeC
Confidence            3999999999999999994

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=88.64  E-value=1.3  Score=42.73  Aligned_cols=56  Identities=11%  Similarity=0.287  Sum_probs=47.5

Q ss_pred             EEEEecCCCEEEEEeCC--CCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            7 DFLISLDDRFLYFSNWL--HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         7 dI~IS~DdRfLYVSnw~--hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      ++..||-|++|-++.++  .|+|-+||+.+   -|+++++..-+                                 ---
T Consensus       316 ~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n---~K~i~~~~a~~---------------------------------tt~  359 (566)
T KOG2315|consen  316 TAFFNPHGNIILLAGFGNLPGDMEVWDVPN---RKLIAKFKAAN---------------------------------TTV  359 (566)
T ss_pred             ceEECCCCCEEEEeecCCCCCceEEEeccc---hhhccccccCC---------------------------------ceE
Confidence            57899999999999885  69999999876   77888777655                                 456


Q ss_pred             EEEccCCCEEEEEe
Q 031020           85 IQLSLDGKRLYVTN   98 (167)
Q Consensus        85 ~~LS~DGkrLyVaN   98 (167)
                      +..||||+++++|+
T Consensus       360 ~eW~PdGe~flTAT  373 (566)
T KOG2315|consen  360 FEWSPDGEYFLTAT  373 (566)
T ss_pred             EEEcCCCcEEEEEe
Confidence            88999999999887

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=88.47  E-value=13  Score=36.08  Aligned_cols=90  Identities=21%  Similarity=0.308  Sum_probs=53.8

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEE---------e--CceeecC--CceeEeeCCCCCCCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIW---------V--GGLFRKG--SPVVAVTDDGQPYQSDV   70 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~---------~--GG~~~~~--~~v~v~~~~~~~~~p~~   70 (167)
                      -||.+.+|+|+++||- +--.|-|--|++..-.+-+++|+..         .  |..+..+  -.++|+.-++.-.--+.
T Consensus       322 ~ITaLtv~~d~~~i~S-gsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~  400 (603)
T KOG0318|consen  322 SITALTVSPDGKTIYS-GSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSE  400 (603)
T ss_pred             ceeEEEEcCCCCEEEe-eccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccc
Confidence            3789999999999984 4468899999988644444432111         1  1122211  34444432222221221


Q ss_pred             ccccCccCCCCCceEEEccCCCEEEEEe
Q 031020           71 PEVQGHRLRGGPQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        71 ~~~~g~~~~g~P~~~~LS~DGkrLyVaN   98 (167)
                      ..    ++...|.-++.+.||-.+.|++
T Consensus       401 ~~----~lg~QP~~lav~~d~~~avv~~  424 (603)
T KOG0318|consen  401 VV----KLGSQPKGLAVLSDGGTAVVAC  424 (603)
T ss_pred             ee----ecCCCceeEEEcCCCCEEEEEe
Confidence            11    3444588999999998888888

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=87.82  E-value=1.5  Score=38.51  Aligned_cols=66  Identities=23%  Similarity=0.307  Sum_probs=45.2

Q ss_pred             CCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEEccCCCE
Q 031020           14 DRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKR   93 (167)
Q Consensus        14 dRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS~DGkr   93 (167)
                      +.+||...|..+.|++.|   |.+.+.++.+.+.+.....       ......+|+.-+         -+-++..+.+++
T Consensus       184 ~G~IyANVW~td~I~~Id---p~tG~V~~~iDls~L~~~~-------~~~~~~~~~~dV---------LNGIAyd~~~~~  244 (264)
T PF05096_consen  184 NGKIYANVWQTDRIVRID---PETGKVVGWIDLSGLRPEV-------GRDKSRQPDDDV---------LNGIAYDPETDR  244 (264)
T ss_dssp             TTEEEEEETTSSEEEEEE---TTT-BEEEEEE-HHHHHHH-------TSTTST--TTS----------EEEEEEETTTTE
T ss_pred             cCEEEEEeCCCCeEEEEe---CCCCeEEEEEEhhHhhhcc-------cccccccccCCe---------eEeEeEeCCCCE
Confidence            458999999999999887   8889999999998854210       011111222222         566889999999


Q ss_pred             EEEEe
Q 031020           94 LYVTN   98 (167)
Q Consensus        94 LyVaN   98 (167)
                      ||||=
T Consensus       245 l~vTG  249 (264)
T PF05096_consen  245 LFVTG  249 (264)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99999

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=87.56  E-value=2  Score=24.87  Aligned_cols=26  Identities=8%  Similarity=0.158  Sum_probs=22.1

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEE
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQY   30 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qy   30 (167)
                      .+.+|++++ +-.|||+.+....|++|
T Consensus         3 ~P~gvav~~-~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    3 YPHGVAVDS-DGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             SEEEEEEET-TSEEEEEECCCTEEEEE
T ss_pred             CCcEEEEeC-CCCEEEEECCCCEEEEC
Confidence            478999995 45899999999999987

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PTZ00421 coronin; Provisional

Probab=87.49  E-value=19  Score=33.61  Aligned_cols=31  Identities=19%  Similarity=0.228  Sum_probs=25.6

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      ..+..|.+|+|++.|..++ .++.|+.||+..
T Consensus       169 ~~V~sla~spdG~lLatgs-~Dg~IrIwD~rs  199 (493)
T PTZ00421        169 DQITSLEWNLDGSLLCTTS-KDKKLNIIDPRD  199 (493)
T ss_pred             CceEEEEEECCCCEEEEec-CCCEEEEEECCC
Confidence            3578899999999887666 478999999764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=87.30  E-value=4.2  Score=31.78  Aligned_cols=36  Identities=11%  Similarity=0.108  Sum_probs=27.7

Q ss_pred             EecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCce
Q 031020           10 ISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGL   49 (167)
Q Consensus        10 IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~   49 (167)
                      ..++++.||++. ..+.|..||+.+   .++.-+..+.+.
T Consensus        32 ~~~~~~~v~~~~-~~~~l~~~d~~t---G~~~W~~~~~~~   67 (238)
T PF13360_consen   32 AVPDGGRVYVAS-GDGNLYALDAKT---GKVLWRFDLPGP   67 (238)
T ss_dssp             EEEETTEEEEEE-TTSEEEEEETTT---SEEEEEEECSSC
T ss_pred             EEEeCCEEEEEc-CCCEEEEEECCC---CCEEEEeecccc
Confidence            556889999996 678999999654   778777777653

...

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=87.17  E-value=2.5  Score=39.14  Aligned_cols=118  Identities=19%  Similarity=0.197  Sum_probs=70.3

Q ss_pred             CCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEE---EEEeCceeecCC----ceeEeeCCCCCCCCCCcccc
Q 031020            2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTG---QIWVGGLFRKGS----PVVAVTDDGQPYQSDVPEVQ   74 (167)
Q Consensus         2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg---~v~~GG~~~~~~----~v~v~~~~~~~~~p~~~~~~   74 (167)
                      |.-|.-|.+|+|..||-+|. ..+.|.+|.+++..+++...   .....+.+.+..    |-.|.+.     +-..+-..
T Consensus       218 ~~~IySL~Fs~ds~~L~~sS-~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~-----~~~~R~FA  291 (391)
T KOG2110|consen  218 PVSIYSLSFSPDSQFLAASS-NTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSV-----LDQSRKFA  291 (391)
T ss_pred             eeEEEEEEECCCCCeEEEec-CCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhh-----hhhcccee
Confidence            44578899999999997765 57899999999754443321   111122222110    0011111     11112233


Q ss_pred             CccCCCCC--ceEEEc--cCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCC-CeeecCceeEec
Q 031020           75 GHRLRGGP--QMIQLS--LDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKG-GMAINPNFFVDF  141 (167)
Q Consensus        75 g~~~~g~P--~~~~LS--~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G-~l~l~~~F~vDf  141 (167)
                      ..++.+.+  +...|+  ..+.+++||.+                .+++..+.+++++| ...+-++...++
T Consensus       292 t~~l~~s~~~~~~~l~~~~~~~~v~vas~----------------dG~~y~y~l~~~~gGec~lik~h~~~~  347 (391)
T KOG2110|consen  292 TAKLPESGRKNICSLSSIQKIPRVLVASY----------------DGHLYSYRLPPKEGGECALIKRHFLDG  347 (391)
T ss_pred             EEEccCCCccceEEeeccCCCCEEEEEEc----------------CCeEEEEEcCCCCCceeEEEEeeccCC
Confidence            44566667  566677  48899999994                56888899998754 455555544544

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=87.13  E-value=7.9  Score=35.29  Aligned_cols=48  Identities=15%  Similarity=0.114  Sum_probs=34.3

Q ss_pred             CEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEEccCCCEE
Q 031020           15 RFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRL   94 (167)
Q Consensus        15 RfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS~DGkrL   94 (167)
                      -.||++|++.|.|..+|.+. .+...+.++                                  .|-|+-+.+-  |+.|
T Consensus       213 grLwvldsgtGev~~vD~~~-G~~e~Va~v----------------------------------pG~~rGL~f~--G~ll  255 (335)
T TIGR03032       213 GKLWLLNSGRGELGYVDPQA-GKFQPVAFL----------------------------------PGFTRGLAFA--GDFA  255 (335)
T ss_pred             CeEEEEECCCCEEEEEcCCC-CcEEEEEEC----------------------------------CCCCccccee--CCEE
Confidence            36899999999999998442 223333333                                  2338888876  9999


Q ss_pred             EEEeC
Q 031020           95 YVTNS   99 (167)
Q Consensus        95 yVaNs   99 (167)
                      +|.-|
T Consensus       256 vVgmS  260 (335)
T TIGR03032       256 FVGLS  260 (335)
T ss_pred             EEEec
Confidence            99887

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=86.97  E-value=1.8  Score=39.75  Aligned_cols=101  Identities=21%  Similarity=0.177  Sum_probs=50.1

Q ss_pred             ceeEEEEecCCCEEEEEeCCCC--cEEEEeccCCCCCeEEE--EEEeCceeecCCceeEeeCCCCCCCCCCccccCccCC
Q 031020            4 LITDFLISLDDRFLYFSNWLHG--DIRQYNIEDPKNPVLTG--QIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR   79 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg--~I~qyDIsdp~~pklvg--~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~   79 (167)
                      .-.+-..|||||+|-+|-=..|  +|.++|++....++|..  .+.+..++..+|.--|             ++.  .-.
T Consensus       239 ~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~iv-------------f~S--dr~  303 (425)
T COG0823         239 NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIV-------------FTS--DRG  303 (425)
T ss_pred             ccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEE-------------EEe--CCC
Confidence            3345678999999877654444  56677766544444321  1222222222211111             111  112


Q ss_pred             CCCceEEEccCCCEE-EEEeCCCccccccccccccccCcEEEEEE
Q 031020           80 GGPQMIQLSLDGKRL-YVTNSLFSAWDCQFYPELKEKGSHMLQID  123 (167)
Q Consensus        80 g~P~~~~LS~DGkrL-yVaNsl~s~wD~Qfyp~~~~~g~~~~~~d  123 (167)
                      |.||-+..+++|+-. -+|.+....+    +|..--+|..|+..-
T Consensus       304 G~p~I~~~~~~g~~~~riT~~~~~~~----~p~~SpdG~~i~~~~  344 (425)
T COG0823         304 GRPQIYLYDLEGSQVTRLTFSGGGNS----NPVWSPDGDKIVFES  344 (425)
T ss_pred             CCcceEEECCCCCceeEeeccCCCCc----CccCCCCCCEEEEEe
Confidence            447777777777632 2233344444    444444566666544

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=86.60  E-value=3.3  Score=40.28  Aligned_cols=73  Identities=25%  Similarity=0.337  Sum_probs=53.7

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      ++-+..||..-|++|..  +.|.|-+|||+.|.+-.-+.++.+--                   ++.      -    -|
T Consensus       421 vVcAvtIS~~trhVyTg--GkgcVKVWdis~pg~k~PvsqLdcl~-------------------rdn------y----iR  469 (705)
T KOG0639|consen  421 VVCAVTISNPTRHVYTG--GKGCVKVWDISQPGNKSPVSQLDCLN-------------------RDN------Y----IR  469 (705)
T ss_pred             EEEEEEecCCcceeEec--CCCeEEEeeccCCCCCCccccccccC-------------------ccc------c----ee
Confidence            56788999999999987  56899999999976555555554321                   111      1    67


Q ss_pred             eEEEccCCCEEEEEeC--CCcccccc
Q 031020           84 MIQLSLDGKRLYVTNS--LFSAWDCQ  107 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNs--l~s~wD~Q  107 (167)
                      ..-|++|||.|.|.-+  -.|-||=.
T Consensus       470 SckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  470 SCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             eeEecCCCceEEeccccceeeeeecc
Confidence            7889999999999764  25667744

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=86.40  E-value=3.3  Score=30.37  Aligned_cols=19  Identities=42%  Similarity=0.399  Sum_probs=17.5

Q ss_pred             CCceEEEccCCCEEEEEeC
Q 031020           81 GPQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        81 ~P~~~~LS~DGkrLyVaNs   99 (167)
                      .|+-+.+|+|+|+||||..
T Consensus        55 ~aNGI~~s~~~k~lyVa~~   73 (86)
T PF01731_consen   55 FANGIAISPDKKYLYVASS   73 (86)
T ss_pred             CCceEEEcCCCCEEEEEec
Confidence            3999999999999999994

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=86.38  E-value=20  Score=33.59  Aligned_cols=93  Identities=14%  Similarity=0.169  Sum_probs=53.2

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      +.+|.+.|||+ |||+-+..|.|+.++-.+ ...+.+..++  +                     .  +.. .-++|+-.
T Consensus        32 Pw~maflPDG~-llVtER~~G~I~~v~~~~-~~~~~~~~l~--~---------------------v--~~~-~ge~GLlg   83 (454)
T TIGR03606        32 PWALLWGPDNQ-LWVTERATGKILRVNPET-GEVKVVFTLP--E---------------------I--VND-AQHNGLLG   83 (454)
T ss_pred             ceEEEEcCCCe-EEEEEecCCEEEEEeCCC-CceeeeecCC--c---------------------e--ecc-CCCCceee
Confidence            56889999995 778988789999876322 2222221111  1                     0  000 01567999


Q ss_pred             EEEccCC------CEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe
Q 031020           85 IQLSLDG------KRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM  131 (167)
Q Consensus        85 ~~LS~DG------krLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l  131 (167)
                      ++|+||=      ++|||+.+--.. +.+ +    .....++++..+..+..+
T Consensus        84 lal~PdF~~~~~n~~lYvsyt~~~~-~~~-~----~~~~~I~R~~l~~~~~~l  130 (454)
T TIGR03606        84 LALHPDFMQEKGNPYVYISYTYKNG-DKE-L----PNHTKIVRYTYDKSTQTL  130 (454)
T ss_pred             EEECCCccccCCCcEEEEEEeccCC-CCC-c----cCCcEEEEEEecCCCCcc
Confidence            9999874      699999851100 000 0    024578888776444433

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=86.18  E-value=1.6  Score=32.19  Aligned_cols=33  Identities=18%  Similarity=0.237  Sum_probs=28.1

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDP   35 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp   35 (167)
                      .++..|++|+|+.||.||--....|.+|-|+.|
T Consensus        57 ~fpNGVals~d~~~vlv~Et~~~Ri~rywl~Gp   89 (89)
T PF03088_consen   57 YFPNGVALSPDESFVLVAETGRYRILRYWLKGP   89 (89)
T ss_dssp             SSEEEEEE-TTSSEEEEEEGGGTEEEEEESSST
T ss_pred             CccCeEEEcCCCCEEEEEeccCceEEEEEEeCC
Confidence            367899999999999999999999999988753

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=86.11  E-value=2.9  Score=36.30  Aligned_cols=17  Identities=29%  Similarity=0.217  Sum_probs=13.7

Q ss_pred             CceEEEccCCCEEEEEe
Q 031020           82 PQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaN   98 (167)
                      .+..++||||++|....
T Consensus        45 ~~~~~~sP~g~~~~~v~   61 (353)
T PF00930_consen   45 LQDAKWSPDGKYIAFVR   61 (353)
T ss_dssp             BSEEEE-SSSTEEEEEE
T ss_pred             cccceeecCCCeeEEEe
Confidence            78899999999887765

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=86.07  E-value=16  Score=30.68  Aligned_cols=18  Identities=28%  Similarity=0.368  Sum_probs=15.8

Q ss_pred             CceEEEccCCCEEEEEeC
Q 031020           82 PQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaNs   99 (167)
                      -..|++||||+|+-+..+
T Consensus       114 I~~l~vSpDG~RvA~v~~  131 (253)
T PF10647_consen  114 ITALRVSPDGTRVAVVVE  131 (253)
T ss_pred             eEEEEECCCCcEEEEEEe
Confidence            678999999999988773

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=85.80  E-value=4.7  Score=40.59  Aligned_cols=81  Identities=20%  Similarity=0.202  Sum_probs=51.5

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .-++++.++||||.|-|+. +.|.|.-||+.+   .+++|.|..--.+.++   +    .+....-..---+|+.    =
T Consensus       521 sdvl~vsfrPdG~elaVaT-ldgqItf~d~~~---~~q~~~IdgrkD~~~g---R----~~~D~~ta~~sa~~K~----F  585 (893)
T KOG0291|consen  521 SDVLAVSFRPDGKELAVAT-LDGQITFFDIKE---AVQVGSIDGRKDLSGG---R----KETDRITAENSAKGKT----F  585 (893)
T ss_pred             cceeEEEEcCCCCeEEEEE-ecceEEEEEhhh---ceeeccccchhhcccc---c----cccceeehhhcccCCc----e
Confidence            4568899999999999998 789999999775   5566555422111111   0    0000111111223444    5


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      ..+.+|.||+.+..+-
T Consensus       586 tti~ySaDG~~IlAgG  601 (893)
T KOG0291|consen  586 TTICYSADGKCILAGG  601 (893)
T ss_pred             EEEEEcCCCCEEEecC
Confidence            6788999999999876

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=85.60  E-value=6.1  Score=39.20  Aligned_cols=94  Identities=23%  Similarity=0.264  Sum_probs=54.0

Q ss_pred             CCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEE--EEEEeC-------c-----eeecC-Cc-eeEeeCC---
Q 031020            2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLT--GQIWVG-------G-----LFRKG-SP-VVAVTDD---   62 (167)
Q Consensus         2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklv--g~v~~G-------G-----~~~~~-~~-v~v~~~~---   62 (167)
                      .-+||++..+|||++..|-+. .|..+.|++.+   .|++  .+|.+-       +     .+..+ +. |-|+...   
T Consensus       451 ~~lITAvcy~PdGk~avIGt~-~G~C~fY~t~~---lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrI  526 (712)
T KOG0283|consen  451 RDLITAVCYSPDGKGAVIGTF-NGYCRFYDTEG---LKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRI  526 (712)
T ss_pred             hhhheeEEeccCCceEEEEEe-ccEEEEEEccC---CeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCce
Confidence            358999999999999988884 78889999775   4443  233322       1     11111 11 2222211   


Q ss_pred             ---CCCCCCCCccccCccCCCCCceEEEccCCCEEEEEeC
Q 031020           63 ---GQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        63 ---~~~~~p~~~~~~g~~~~g~P~~~~LS~DGkrLyVaNs   99 (167)
                         ++...--..-.||-+-....---+|+.|||++..+..
T Consensus       527 RI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se  566 (712)
T KOG0283|consen  527 RIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASE  566 (712)
T ss_pred             EEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeec
Confidence               1111111233455554444455569999999988873

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=85.40  E-value=4  Score=35.79  Aligned_cols=61  Identities=18%  Similarity=0.232  Sum_probs=46.2

Q ss_pred             EEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEEccCCCEEE
Q 031020           16 FLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLY   95 (167)
Q Consensus        16 fLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS~DGkrLy   95 (167)
                      .||..-|....|++.|   |.+.|.++.|.+-|..                 ++.-.. +.+ ..-++-++..+++.|+|
T Consensus       187 ~lyANVw~t~~I~rI~---p~sGrV~~widlS~L~-----------------~~~~~~-~~~-~nvlNGIA~~~~~~r~~  244 (262)
T COG3823         187 ELYANVWQTTRIARID---PDSGRVVAWIDLSGLL-----------------KELNLD-KSN-DNVLNGIAHDPQQDRFL  244 (262)
T ss_pred             EEEEeeeeecceEEEc---CCCCcEEEEEEccCCc-----------------hhcCcc-ccc-cccccceeecCcCCeEE
Confidence            7899999999999877   8889999999988743                 111111 111 12388899999999999


Q ss_pred             EEe
Q 031020           96 VTN   98 (167)
Q Consensus        96 VaN   98 (167)
                      +|-
T Consensus       245 iTG  247 (262)
T COG3823         245 ITG  247 (262)
T ss_pred             Eec
Confidence            999

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=85.29  E-value=5.7  Score=36.02  Aligned_cols=30  Identities=27%  Similarity=0.489  Sum_probs=27.5

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      .|+.+.+|+...+|-||+| +|+++.||+..
T Consensus        15 ~IS~v~f~~~~~~LLvssW-DgslrlYdv~~   44 (323)
T KOG1036|consen   15 GISSVKFSPSSSDLLVSSW-DGSLRLYDVPA   44 (323)
T ss_pred             ceeeEEEcCcCCcEEEEec-cCcEEEEeccc
Confidence            5899999999999999998 78999999874

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=84.80  E-value=18  Score=31.53  Aligned_cols=25  Identities=20%  Similarity=0.226  Sum_probs=21.9

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEe
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYN   31 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyD   31 (167)
                      +..|++.||+| |||+-+ .|.|+.++
T Consensus         4 P~~~a~~pdG~-l~v~e~-~G~i~~~~   28 (331)
T PF07995_consen    4 PRSMAFLPDGR-LLVAER-SGRIWVVD   28 (331)
T ss_dssp             EEEEEEETTSC-EEEEET-TTEEEEEE
T ss_pred             ceEEEEeCCCc-EEEEeC-CceEEEEe
Confidence            67899999985 578888 99999999

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=84.33  E-value=10  Score=36.83  Aligned_cols=54  Identities=22%  Similarity=0.388  Sum_probs=38.6

Q ss_pred             CceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe--eecCceeEeccCCCCCCcce
Q 031020           82 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM--AINPNFFVDFEAEPDGPALA  151 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l--~l~~~F~vDf~~~p~gp~~~  151 (167)
                      -..+.+|+|||.+.|||                +.-.+..+|+|+.|-.|  +-...-.+||.=-|++-.+|
T Consensus       404 I~av~vs~dGK~~vvaN----------------dr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iA  459 (668)
T COG4946         404 IEAVKVSPDGKKVVVAN----------------DRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIA  459 (668)
T ss_pred             eEEEEEcCCCcEEEEEc----------------CceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEE
Confidence            56788999999999999                34467779996555444  34456677887777764433

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=83.48  E-value=14  Score=28.81  Aligned_cols=37  Identities=19%  Similarity=0.152  Sum_probs=25.1

Q ss_pred             EEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeC
Q 031020            7 DFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVG   47 (167)
Q Consensus         7 dI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~G   47 (167)
                      ......++..+|+++. .+.|+.+|+.   +.+++-+..++
T Consensus       115 ~~~~~~~~~~~~~~~~-~g~l~~~d~~---tG~~~w~~~~~  151 (238)
T PF13360_consen  115 SSSPAVDGDRLYVGTS-SGKLVALDPK---TGKLLWKYPVG  151 (238)
T ss_dssp             -SEEEEETTEEEEEET-CSEEEEEETT---TTEEEEEEESS
T ss_pred             ccCceEecCEEEEEec-cCcEEEEecC---CCcEEEEeecC
Confidence            3444455888888886 7888988855   47777666653

...

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=83.42  E-value=13  Score=34.39  Aligned_cols=115  Identities=22%  Similarity=0.266  Sum_probs=66.0

Q ss_pred             eEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCe--EEEEEE-eCc------------------eeecCCceeEe-----
Q 031020            6 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPV--LTGQIW-VGG------------------LFRKGSPVVAV-----   59 (167)
Q Consensus         6 tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pk--lvg~v~-~GG------------------~~~~~~~v~v~-----   59 (167)
                      .+.++|||||||-+|.+-- +|-+|.+-=.....  .+-+++ +-|                  ..+++|..+|-     
T Consensus       232 ~~aavSP~GRFia~~gFTp-DVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr  310 (420)
T KOG2096|consen  232 YDAAVSPDGRFIAVSGFTP-DVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR  310 (420)
T ss_pred             cceeeCCCCcEEEEecCCC-CceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence            4678999999999998754 67778764221111  111110 000                  12233333332     


Q ss_pred             --eC---CCCCCCCCCccccCccCCCCCceEEEccCCCEEEEEe----CCCcccccccccccc-ccCcEEEEEEee
Q 031020           60 --TD---DGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN----SLFSAWDCQFYPELK-EKGSHMLQIDVN  125 (167)
Q Consensus        60 --~~---~~~~~~p~~~~~~g~~~~g~P~~~~LS~DGkrLyVaN----sl~s~wD~Qfyp~~~-~~g~~~~~~dvD  125 (167)
                        .+   +-+.+-|.+.+-.|-.    |=-+.|||.|+-|-++.    .+|.+=|-.-||++- -.+..|--|..+
T Consensus       311 Y~~~qDpk~Lk~g~~pl~aag~~----p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~  382 (420)
T KOG2096|consen  311 YEAGQDPKILKEGSAPLHAAGSE----PVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYS  382 (420)
T ss_pred             EecCCCchHhhcCCcchhhcCCC----ceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEec
Confidence              11   2233344555555655    88999999999999875    345555666777763 125556556554

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=83.33  E-value=7.4  Score=33.40  Aligned_cols=68  Identities=13%  Similarity=0.142  Sum_probs=38.5

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      +++|.+.|.-..|||=.=-...|..+|-+    .+.++...+-+.+.              .++.    +-.+    |+-
T Consensus       173 ~S~l~~~p~t~~lliLS~es~~l~~~d~~----G~~~~~~~L~~g~~--------------gl~~----~~~Q----pEG  226 (248)
T PF06977_consen  173 LSGLSYDPRTGHLLILSDESRLLLELDRQ----GRVVSSLSLDRGFH--------------GLSK----DIPQ----PEG  226 (248)
T ss_dssp             --EEEEETTTTEEEEEETTTTEEEEE-TT------EEEEEE-STTGG--------------G-SS-------S----EEE
T ss_pred             ccceEEcCCCCeEEEEECCCCeEEEECCC----CCEEEEEEeCCccc--------------Cccc----ccCC----ccE
Confidence            57889999988898877677788877722    44555555433110              0000    0013    999


Q ss_pred             EEEccCCCEEEEEeC
Q 031020           85 IQLSLDGKRLYVTNS   99 (167)
Q Consensus        85 ~~LS~DGkrLyVaNs   99 (167)
                      +++++|| +||++|+
T Consensus       227 Ia~d~~G-~LYIvsE  240 (248)
T PF06977_consen  227 IAFDPDG-NLYIVSE  240 (248)
T ss_dssp             EEE-TT---EEEEET
T ss_pred             EEECCCC-CEEEEcC
Confidence            9999999 8999995

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=83.25  E-value=5.3  Score=40.21  Aligned_cols=61  Identities=21%  Similarity=0.353  Sum_probs=43.9

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -++.+.+|+++..||-+.| +..|+.|||=+.     .|++.+=.                             ++----
T Consensus       480 PVs~l~f~~~~~~LaS~SW-DkTVRiW~if~s-----~~~vEtl~-----------------------------i~sdvl  524 (893)
T KOG0291|consen  480 PVSGLSFSPDGSLLASGSW-DKTVRIWDIFSS-----SGTVETLE-----------------------------IRSDVL  524 (893)
T ss_pred             cceeeEEccccCeEEeccc-cceEEEEEeecc-----CceeeeEe-----------------------------ecccee
Confidence            4677889999999988888 569999999762     22332211                             001145


Q ss_pred             eEEEccCCCEEEEEeC
Q 031020           84 MIQLSLDGKRLYVTNS   99 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNs   99 (167)
                      .++++|||+.|.||+.
T Consensus       525 ~vsfrPdG~elaVaTl  540 (893)
T KOG0291|consen  525 AVSFRPDGKELAVATL  540 (893)
T ss_pred             EEEEcCCCCeEEEEEe
Confidence            6889999999999984

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=83.03  E-value=8  Score=38.42  Aligned_cols=62  Identities=19%  Similarity=0.184  Sum_probs=47.7

Q ss_pred             CCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      +-++|-|++.|-|..-|+|.-+++.||.|.|.|   -+.+..-.+-.                                -
T Consensus       409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d---~~Vv~W~Dl~~--------------------------------l  453 (712)
T KOG0283|consen  409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD---KKVVDWNDLRD--------------------------------L  453 (712)
T ss_pred             CCeeEEEEecccCCCcEeecccccceEEeecCc---CeeEeehhhhh--------------------------------h
Confidence            347899999997777789999999999999998   33443222222                                2


Q ss_pred             CceEEEccCCCEEEEEe
Q 031020           82 PQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaN   98 (167)
                      --.++++|||+...|..
T Consensus       454 ITAvcy~PdGk~avIGt  470 (712)
T KOG0283|consen  454 ITAVCYSPDGKGAVIGT  470 (712)
T ss_pred             heeEEeccCCceEEEEE
Confidence            45678999999999987

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.77  E-value=9.2  Score=35.60  Aligned_cols=29  Identities=24%  Similarity=0.319  Sum_probs=21.7

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCC
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDP   35 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp   35 (167)
                      +-|+.+|||++|| +|--. +..++|++.+-
T Consensus       189 V~DL~FS~dgk~l-asig~-d~~~VW~~~~g  217 (398)
T KOG0771|consen  189 VKDLDFSPDGKFL-ASIGA-DSARVWSVNTG  217 (398)
T ss_pred             cccceeCCCCcEE-EEecC-CceEEEEeccC
Confidence            5689999999998 34333 38889998763

>PTZ00420 coronin; Provisional

Probab=81.73  E-value=19  Score=34.63  Aligned_cols=32  Identities=19%  Similarity=0.034  Sum_probs=24.9

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      +-+.+|.+||++..+.+|+-..+.|++||+..
T Consensus        75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t  106 (568)
T PTZ00420         75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPH  106 (568)
T ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Confidence            45789999998544556666789999999975

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=81.43  E-value=6.6  Score=35.33  Aligned_cols=80  Identities=14%  Similarity=0.231  Sum_probs=53.1

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      +--|.|+|||||+-+-. -...+..||+++--..+...                                  ++...-|.
T Consensus       192 CicI~f~p~GryfA~Gs-ADAlvSLWD~~ELiC~R~is----------------------------------RldwpVRT  236 (313)
T KOG1407|consen  192 CICIEFDPDGRYFATGS-ADALVSLWDVDELICERCIS----------------------------------RLDWPVRT  236 (313)
T ss_pred             eEEEEECCCCceEeecc-ccceeeccChhHhhhheeec----------------------------------cccCceEE
Confidence            45689999999996654 45677889988622222221                                  34445789


Q ss_pred             EEEccCCCEEEEEeCCCccccccccccc--cccCcEEEEEEeeC
Q 031020           85 IQLSLDGKRLYVTNSLFSAWDCQFYPEL--KEKGSHMLQIDVNS  126 (167)
Q Consensus        85 ~~LS~DGkrLyVaNsl~s~wD~Qfyp~~--~~~g~~~~~~dvD~  126 (167)
                      +.+|-|||.|--+.+       ..|=+.  ++.|+.+-+|-.+.
T Consensus       237 lSFS~dg~~lASaSE-------Dh~IDIA~vetGd~~~eI~~~~  273 (313)
T KOG1407|consen  237 LSFSHDGRMLASASE-------DHFIDIAEVETGDRVWEIPCEG  273 (313)
T ss_pred             EEeccCcceeeccCc-------cceEEeEecccCCeEEEeeccC
Confidence            999999999987775       333343  35566666666543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=80.74  E-value=4.3  Score=38.53  Aligned_cols=30  Identities=27%  Similarity=0.543  Sum_probs=26.0

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      -+.|++|+.||++||..+ -+-.|+.|+..+
T Consensus       356 ~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~  385 (519)
T KOG0293|consen  356 KVHDLAITYDGKYVLLVT-VDKKIRLYNREA  385 (519)
T ss_pred             eeEEEEEcCCCcEEEEEe-cccceeeechhh
Confidence            468999999999999998 677899888765

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=80.70  E-value=8.7  Score=35.49  Aligned_cols=60  Identities=15%  Similarity=0.193  Sum_probs=43.9

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      ++.-+.+|+-|-+|-|-| ..|.|..||... .+   ++++.. +.+                         +.    -+
T Consensus        25 ~a~~~~Fs~~G~~lAvGc-~nG~vvI~D~~T-~~---iar~ls-aH~-------------------------~p----i~   69 (405)
T KOG1273|consen   25 LAECCQFSRWGDYLAVGC-ANGRVVIYDFDT-FR---IARMLS-AHV-------------------------RP----IT   69 (405)
T ss_pred             ccceEEeccCcceeeeec-cCCcEEEEEccc-cc---hhhhhh-ccc-------------------------cc----ee
Confidence            356789999999999988 689999999874 32   334332 211                         11    46


Q ss_pred             eEEEccCCCEEEEEe
Q 031020           84 MIQLSLDGKRLYVTN   98 (167)
Q Consensus        84 ~~~LS~DGkrLyVaN   98 (167)
                      -++-|+|||.|.-+.
T Consensus        70 sl~WS~dgr~LltsS   84 (405)
T KOG1273|consen   70 SLCWSRDGRKLLTSS   84 (405)
T ss_pred             EEEecCCCCEeeeec
Confidence            788999999998776

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=80.43  E-value=15  Score=33.73  Aligned_cols=56  Identities=23%  Similarity=0.259  Sum_probs=34.0

Q ss_pred             EEecCCCEEEEEeCCCC--cEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEE
Q 031020            9 LISLDDRFLYFSNWLHG--DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQ   86 (167)
Q Consensus         9 ~IS~DdRfLYVSnw~hg--~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~   86 (167)
                      .+|||||++|...=..|  .|.+++..- .   -+.++...+.                               +...-.
T Consensus       288 s~spdG~~ivf~Sdr~G~p~I~~~~~~g-~---~~~riT~~~~-------------------------------~~~~p~  332 (425)
T COG0823         288 SWSPDGSKIVFTSDRGGRPQIYLYDLEG-S---QVTRLTFSGG-------------------------------GNSNPV  332 (425)
T ss_pred             cCCCCCCEEEEEeCCCCCcceEEECCCC-C---ceeEeeccCC-------------------------------CCcCcc
Confidence            47999999876654444  555555431 2   2233333331                               133456


Q ss_pred             EccCCCEEEEEeC
Q 031020           87 LSLDGKRLYVTNS   99 (167)
Q Consensus        87 LS~DGkrLyVaNs   99 (167)
                      .||||+++...++
T Consensus       333 ~SpdG~~i~~~~~  345 (425)
T COG0823         333 WSPDGDKIVFESS  345 (425)
T ss_pred             CCCCCCEEEEEec
Confidence            8999999999994

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=80.26  E-value=15  Score=31.83  Aligned_cols=77  Identities=16%  Similarity=0.082  Sum_probs=39.5

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      +.+.+...||||++|....  .++|...+....    ..-++...|.   .   .|.     ...|+=  |--+++-+..
T Consensus        43 ~~~~~~~~sP~g~~~~~v~--~~nly~~~~~~~----~~~~lT~dg~---~---~i~-----nG~~dw--vyeEEv~~~~  103 (353)
T PF00930_consen   43 PKLQDAKWSPDGKYIAFVR--DNNLYLRDLATG----QETQLTTDGE---P---GIY-----NGVPDW--VYEEEVFDRR  103 (353)
T ss_dssp             TTBSEEEE-SSSTEEEEEE--TTEEEEESSTTS----EEEESES--T---T---TEE-----ESB--H--HHHHHTSSSS
T ss_pred             cccccceeecCCCeeEEEe--cCceEEEECCCC----CeEEeccccc---e---eEE-----cCccce--eccccccccc
Confidence            3467889999999986654  368888776532    2223333330   0   000     011110  0001122336


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      ..+-.||||++|...-
T Consensus       104 ~~~~WSpd~~~la~~~  119 (353)
T PF00930_consen  104 SAVWWSPDSKYLAFLR  119 (353)
T ss_dssp             BSEEE-TTSSEEEEEE
T ss_pred             cceEECCCCCEEEEEE
Confidence            8899999999987754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	167
2ece_A	462	X-Ray Structure Of Hypothetical Selenium-Binding Pr		2e-32

>pdb|2ECE|A Chain A, X-Ray Structure Of Hypothetical Selenium-Binding Protein From Sulfolobus Tokodaii, St0059 Length = 462

Iteration: 1
 Score =  134 bits (338), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 107/165 (64%), Gaps = 27/165 (16%)
Query: 1   MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
           +P L+TD  ISLDD+FLY S W  G++RQY+I +P  PVLTG++ +GG+F          
Sbjct: 319 VPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIF---------- 368
Query: 61  DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPE-LKEKGSHM 119
                +++D P   GH+L G PQM+++S DG+R+YVTNSL+S WD QFYPE LK     M
Sbjct: 369 -----HRADHP--AGHKLTGAPQMLEISRDGRRVYVTNSLYSTWDNQFYPEGLK---GWM 418
Query: 120 LQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSD 164
           ++++ N   GG+ I+  FFVDF     G A +H++R  GGD +SD
Sbjct: 419 VKLNANPS-GGLEIDKEFFVDF-----GEARSHQVRLSGGDASSD 457

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	167
2ece_A	462	462AA long hypothetical selenium-binding protein;	2e-61
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	4e-05
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	9e-04

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} Length = 462

 Score =  195 bits (497), Expect = 2e-61
 Identities = 72/166 (43%), Positives = 102/166 (61%), Gaps = 25/166 (15%)

Query: 1   MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVT 60
           +P L+TD  ISLDD+FLY S W  G++RQY+I +P  PVLTG++ +GG+F +        
Sbjct: 319 VPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRA------- 371

Query: 61  DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHML 120
                         GH+L G PQM+++S DG+R+YVTNSL+S WD QFYPE       M+
Sbjct: 372 ----------DHPAGHKLTGAPQMLEISRDGRRVYVTNSLYSTWDNQFYPE--GLKGWMV 419

Query: 121 QIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIW 166
           +++ N   GG+ I+  FFVDF     G A +H++R  GGD +SD +
Sbjct: 420 KLNAN-PSGGLEIDKEFFVDF-----GEARSHQVRLSGGDASSDSY 459

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Length = 331

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 20/151 (13%), Positives = 45/151 (29%), Gaps = 34/151 (22%)

Query: 10  ISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPV-VAVTDDGQPY-- 66
           I+ DD+F      L+      +            I +         V +A++ +G     
Sbjct: 91  ITPDDQFAVTVTGLNHPFNMQSY-SFLKNKFISTIPIPY-----DAVGIAISPNGNGLIL 144

Query: 67  ----------------QSDVPEVQGHRLRGG--PQMIQLSLDGKRLYVTNSL---FSAWD 105
                              + +     + GG  P  I  + DG   +V N +       +
Sbjct: 145 IDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILE 204

Query: 106 CQFYPELKEKGSHMLQIDVNSEKGGMAINPN 136
                +  E  + +  +  N+  G + ++ +
Sbjct: 205 ----TQNPENITLLNAVGTNNLPGTIVVSRD 231

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Length = 331

 Score = 37.4 bits (87), Expect = 9e-04
 Identities = 15/118 (12%), Positives = 34/118 (28%), Gaps = 30/118 (25%)

Query: 7   DFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPV-VAVTDDGQ- 64
           +   + D  F + +N +   I     ++P+N  L   +          P  + V+ DG  
Sbjct: 180 NITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNN-----LPGTIVVSRDGST 234

Query: 65  -----------------------PYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNS 99
                                          +   R   G   + L+    +L+++ +
Sbjct: 235 VYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISAN 292

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	167
2ece_A	462	462AA long hypothetical selenium-binding protein;	100.0
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.44
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.37
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.19
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.13
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.12
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.1
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.04
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.02
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.02
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.02
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.99
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.99
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.97
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.83
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.8
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.79
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.73
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.72
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.7
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.66
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.62
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.61
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.6
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.6
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.58
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.57
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.56
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.53
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.53
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.51
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.49
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.47
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.45
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.43
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.42
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.41
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.41
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.37
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.36
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.36
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.32
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.31
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.24
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.23
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.22
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.17
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.16
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.15
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.14
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.07
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.05
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.04
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.0
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.95
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.93
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.88
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.86
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.85
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	97.85
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.85
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.84
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.83
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	97.8
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	97.8
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.78
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.76
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.76
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.74
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.74
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.72
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.68
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.67
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.64
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.63
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	97.62
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.61
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	97.6
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.57
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.57
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.55
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.54
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	97.54
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.53
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	97.51
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.5
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.5
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	97.49
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	97.49
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	97.48
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.47
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.47
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.44
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.43
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	97.43
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.42
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.41
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.4
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.4
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.39
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	97.39
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.39
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.39
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	97.36
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.35
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	97.34
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.32
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	97.3
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.26
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.25
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.25
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.19
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	97.13
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	97.12
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	97.12
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	97.09
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.07
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	97.06
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.01
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	97.0
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	96.99
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	96.96
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	96.94
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.93
1k32_A	1045	Tricorn protease; protein degradation, substrate g	96.93
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	96.91
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.91
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	96.91
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	96.88
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	96.84
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	96.83
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.8
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	96.78
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	96.78
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.77
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	96.75
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	96.72
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.7
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.7
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	96.69
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	96.68
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	96.67
3ow8_A	321	WD repeat-containing protein 61; structural genomi	96.65
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	96.65
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.61
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	96.6
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	96.57
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	96.53
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	96.5
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	96.5
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	96.5
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	96.47
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	96.47
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	96.43
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	96.41
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	96.41
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	96.4
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	96.38
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	96.35
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	96.34
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	96.3
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	96.28
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.25
1k32_A	1045	Tricorn protease; protein degradation, substrate g	96.25
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	96.24
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	96.23
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	96.22
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	96.21
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.2
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	96.18
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	96.17
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	96.17
3ow8_A	321	WD repeat-containing protein 61; structural genomi	96.16
3jrp_A	379	Fusion protein of protein transport protein SEC13	96.16
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	96.14
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.12
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	96.12
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	96.12
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	96.07
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	96.06
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	96.05
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	96.03
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	96.03
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	96.02
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	95.98
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	95.97
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	95.96
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	95.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	95.94
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	95.94
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.89
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	95.89
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	95.87
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	95.83
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	95.8
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	95.8
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	95.8
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	95.71
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	95.69
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	95.68
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.66
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	95.62
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	95.6
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	95.57
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.55
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	95.51
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	95.51
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	95.49
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	95.47
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	95.47
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	95.4
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	95.39
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	95.38
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	95.36
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	95.33
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.28
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	95.24
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	95.23
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	95.23
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	95.19
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	95.11
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	95.08
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	95.06
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	95.04
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	95.01
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	94.96
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	94.94
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	94.92
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	94.91
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	94.9
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.86
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	94.85
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	94.84
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	94.84
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	94.8
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	94.8
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	94.77
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	94.69
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	94.62
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	94.51
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	94.49
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	94.46
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	94.31
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	94.31
2pm7_B	297	Protein transport protein SEC13, protein transport	94.26
3jrp_A	379	Fusion protein of protein transport protein SEC13	94.21
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	94.19
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	93.86
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	93.78
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	93.78
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	93.77
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	93.69
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	93.63
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	93.39
2pm7_B	297	Protein transport protein SEC13, protein transport	93.33
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	93.3
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	93.19
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	93.07
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	93.02
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	92.73
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	92.72
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	92.66
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	92.53
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	92.48
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	92.14
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	91.95
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	91.91
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	91.79
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	91.67
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	91.34
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	91.28
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	91.22
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	91.09
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	90.7
3jro_A	753	Fusion protein of protein transport protein SEC13	90.09
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	89.39
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	89.38
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	89.36
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	89.16
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	89.07
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	88.4
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	88.23
3jro_A	753	Fusion protein of protein transport protein SEC13	86.68
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	86.3
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	85.85
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	84.47
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	84.02
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	83.6
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	82.99
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	81.21

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=100.00  E-value=4.4e-55  Score=395.86  Aligned_cols=141  Identities=51%  Similarity=0.979  Sum_probs=133.5

Q ss_pred             CCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      ++++++|+||+||||||||||+||+|+||||+|+++++++++|++||.+               ++++.+  +|+++.|+
T Consensus       320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~---------------~~~~~~--~G~~~~gg  382 (462)
T 2ece_A          320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIF---------------HRADHP--AGHKLTGA  382 (462)
T ss_dssp             CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTT---------------TCBCCT--TSCCCCSC
T ss_pred             CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCee---------------cccccc--ccccCCCC
Confidence            3789999999999999999999999999999999999999999999965               455544  99999999


Q ss_pred             CceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCCCCcceeeeecCCCCc
Q 031020           82 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDC  161 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~gp~~~he~r~pggdc  161 (167)
                      ||||+||||||||||||||||+||+||||+  +++.+|+++|||+++| |+++++|+|||++     +||||||||||||
T Consensus       383 Pr~~~lSpDGk~LyVaNsl~~~wd~Qfyp~--~~~~~~~~~~vd~~~G-L~~~~~f~vdf~~-----~~~h~~r~~ggd~  454 (462)
T 2ece_A          383 PQMLEISRDGRRVYVTNSLYSTWDNQFYPE--GLKGWMVKLNANPSGG-LEIDKEFFVDFGE-----ARSHQVRLSGGDA  454 (462)
T ss_dssp             CCCEEECTTSSEEEEECCCCHHHHHHHSTT--CCCCEEEEEEECTTSC-EEEEEEEEEECTT-----SEEEEEEETTCCT
T ss_pred             CCEEEEcCCCCEEEEEcCCcccccccccCC--CCceEEEEEEecCCCC-ceeCCCEEeeccc-----CcceeeecCCCCc
Confidence            999999999999999999999999999999  7899999999999999 9999999999988     7999999999999


Q ss_pred             CccccC
Q 031020          162 TSDIWI  167 (167)
Q Consensus       162 tsd~~~  167 (167)
                      |||||+
T Consensus       455 ~sd~~~  460 (462)
T 2ece_A          455 SSDSYC  460 (462)
T ss_dssp             TTCCCS
T ss_pred             Cccccc
Confidence            999996

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.44  E-value=7.4e-13  Score=105.63  Aligned_cols=83  Identities=19%  Similarity=0.192  Sum_probs=70.2

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+.+|++|||||+|||++...+.|.+|++......+.+..+..+|.                           .    |+
T Consensus       241 ~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~---------------------------~----~~  289 (347)
T 3hfq_A          241 GAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGD---------------------------F----PR  289 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSS---------------------------C----CC
T ss_pred             cceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCC---------------------------C----cC
Confidence            3678999999999999999999999999975445677777777552                           2    99


Q ss_pred             eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCee
Q 031020           84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA  132 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~  132 (167)
                      .+++||||++|||+|+               ++..+..+++|+++|.++
T Consensus       290 ~~~~spdg~~l~v~~~---------------~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          290 DFDLDPTEAFVVVVNQ---------------NTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             EEEECTTSSEEEEEET---------------TTTEEEEEEECTTTCCEE
T ss_pred             eEEECCCCCEEEEEEc---------------CCCcEEEEEEeCCCCeEE
Confidence            9999999999999993               456777889999999986

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.37  E-value=7.6e-12  Score=100.59  Aligned_cols=82  Identities=20%  Similarity=0.296  Sum_probs=68.2

Q ss_pred             eeEEEEecCCCEEEEEeCC-CCcEEEEecc-CCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            5 ITDFLISLDDRFLYFSNWL-HGDIRQYNIE-DPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~-hg~I~qyDIs-dp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      +++|.+|||||+||++++. ++.|.+|+++ .....+.+..+..|.                            .    |
T Consensus       261 ~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~----------------------------~----~  308 (361)
T 3scy_A          261 SGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGI----------------------------H----P  308 (361)
T ss_dssp             EEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSS----------------------------C----C
T ss_pred             cccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCC----------------------------C----C
Confidence            4699999999999999999 9999999997 234556677777632                            2    9


Q ss_pred             ceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeee
Q 031020           83 QMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAI  133 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l  133 (167)
                      +.+++||||++|||+|+               +++.+..+++|+++|.++.
T Consensus       309 ~~~~~spdg~~l~~~~~---------------~~~~v~v~~~d~~~g~~~~  344 (361)
T 3scy_A          309 RNFIITPNGKYLLVACR---------------DTNVIQIFERDQATGLLTD  344 (361)
T ss_dssp             CEEEECTTSCEEEEEET---------------TTTEEEEEEECTTTCCEEE
T ss_pred             ceEEECCCCCEEEEEEC---------------CCCCEEEEEEECCCCcEee
Confidence            99999999999999993               4667777888989999854

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.19  E-value=3.5e-10  Score=87.73  Aligned_cols=87  Identities=18%  Similarity=0.252  Sum_probs=69.7

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccC-CCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIED-PKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd-p~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .+++|.+|+|+++||+++...+.|.+||+.. ....+.+..+..++                            .    |
T Consensus       232 ~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~----------------------------~----~  279 (343)
T 1ri6_A          232 WAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET----------------------------Q----P  279 (343)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS----------------------------S----C
T ss_pred             CccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC----------------------------c----c
Confidence            3568999999999999999999999999974 23456666666554                            2    8


Q ss_pred             ceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCce
Q 031020           83 QMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNF  137 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F  137 (167)
                      ..+++|+||++||++++               ..+.+..+++|+++|.++.-..+
T Consensus       280 ~~~~~s~dg~~l~~~~~---------------~~~~v~v~~~d~~~g~~~~~~~~  319 (343)
T 1ri6_A          280 RGFNVDHSGKYLIAAGQ---------------KSHHISVYEIVGEQGLLHEKGRY  319 (343)
T ss_dssp             CCEEECTTSSEEEEECT---------------TTCEEEEEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCCEEEEecC---------------CCCeEEEEEEcCCCceeeEcccc
Confidence            99999999999999993               45677778999899988654444

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.13  E-value=2.7e-10  Score=96.81  Aligned_cols=66  Identities=6%  Similarity=-0.116  Sum_probs=51.9

Q ss_pred             EEEEecCCCEEEEEeC---------CCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCcc
Q 031020            7 DFLISLDDRFLYFSNW---------LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHR   77 (167)
Q Consensus         7 dI~IS~DdRfLYVSnw---------~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~   77 (167)
                      .|.+|||+|+|||+|.         ..+.|.+||+   .+.+++++++++|.-                    ....|. 
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~---~t~~~~~~i~~~~~~--------------------~~~~g~-  125 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP---VTFLPIADIELPDAP--------------------RFDVGP-  125 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC---CCCcEEEEEECCCcc--------------------ccccCC-
Confidence            8999999999999995         2577999995   458899999998410                    000122 


Q ss_pred             CCCCCceEEEccCCCEEEEEeC
Q 031020           78 LRGGPQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        78 ~~g~P~~~~LS~DGkrLyVaNs   99 (167)
                         .|+++++|||||+|||+|.
T Consensus       126 ---~p~~~~~spDG~~l~v~n~  144 (373)
T 2mad_H          126 ---YSWMNANTPNNADLLFFQF  144 (373)
T ss_pred             ---CccceEECCCCCEEEEEec
Confidence               3999999999999999993

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.12  E-value=7.1e-10  Score=90.72  Aligned_cols=85  Identities=13%  Similarity=0.213  Sum_probs=62.6

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+..+.+|||||+||+++++.+.|++||+......+.++.+.+..                         .|    .+|+
T Consensus       146 ~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-------------------------~g----~~p~  196 (365)
T 1jof_A          146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-------------------------PG----DHPR  196 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-------------------------TT----CCEE
T ss_pred             cceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-------------------------CC----CCCC
Confidence            467899999999999999999999999997312233334443100                         01    1399


Q ss_pred             eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCee
Q 031020           84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA  132 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~  132 (167)
                      .+++||||++|||+|+               .++.+..+++|.++|.++
T Consensus       197 ~~~~spdg~~l~v~~~---------------~~~~v~v~~~~~~~g~~~  230 (365)
T 1jof_A          197 WVAMHPTGNYLYALME---------------AGNRICEYVIDPATHMPV  230 (365)
T ss_dssp             EEEECTTSSEEEEEET---------------TTTEEEEEEECTTTCCEE
T ss_pred             EeEECCCCCEEEEEEC---------------CCCeEEEEEEeCCCCcEE
Confidence            9999999999999993               455677778877778764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.10  E-value=1.1e-09  Score=87.95  Aligned_cols=89  Identities=20%  Similarity=0.259  Sum_probs=65.9

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      +..+.+|||+|+||+++...+.|.+||+.+ ...+...++.....                            -..+|+.
T Consensus       213 ~~~~~~spdg~~l~v~~~~~~~v~v~~~~~-g~~~~~~~~~~~~~----------------------------~~~~~~~  263 (361)
T 3scy_A          213 PRHLIFNSDGKFAYLINEIGGTVIAFRYAD-GMLDEIQTVAADTV----------------------------NAQGSGD  263 (361)
T ss_dssp             EEEEEECTTSSEEEEEETTTCEEEEEEEET-TEEEEEEEEESCSS----------------------------CCCCEEE
T ss_pred             CeEEEEcCCCCEEEEEcCCCCeEEEEEecC-CceEEeEEEecCCC----------------------------CCCCccc
Confidence            567999999999999999999999999873 33333444432210                            0123889


Q ss_pred             EEEccCCCEEEEEeCCCcccccccccccccc-CcEEEEEEeeCCCCCeeecCce
Q 031020           85 IQLSLDGKRLYVTNSLFSAWDCQFYPELKEK-GSHMLQIDVNSEKGGMAINPNF  137 (167)
Q Consensus        85 ~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~-g~~~~~~dvD~~~G~l~l~~~F  137 (167)
                      +++||||++|||+|+               . ...+..+++|+++|.++.-..+
T Consensus       264 i~~spdg~~l~v~~~---------------~~~~~i~v~~~~~~~g~~~~~~~~  302 (361)
T 3scy_A          264 IHLSPDGKYLYASNR---------------LKADGVAIFKVDETNGTLTKVGYQ  302 (361)
T ss_dssp             EEECTTSSEEEEEEC---------------SSSCEEEEEEECTTTCCEEEEEEE
T ss_pred             EEECCCCCEEEEECC---------------CCCCEEEEEEEcCCCCcEEEeeEe
Confidence            999999999999993               3 4677778998888887654443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.04  E-value=6.4e-10  Score=92.68  Aligned_cols=65  Identities=12%  Similarity=0.081  Sum_probs=50.9

Q ss_pred             EEEEecCCCEEEEEeC-------C--CCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCcc
Q 031020            7 DFLISLDDRFLYFSNW-------L--HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHR   77 (167)
Q Consensus         7 dI~IS~DdRfLYVSnw-------~--hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~   77 (167)
                      .|++|||+|+|||+|.       +  .+.|.+||+   .+.++++++.+++.-                     .-.|. 
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~---~t~~~~~~i~~~~~~---------------------~~~g~-  108 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA---DKLTFEKEISLPPKR---------------------VQGLN-  108 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET---TTCCEEEEEEECTTB---------------------CCBCC-
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEEC---cCCcEEEEEEcCccc---------------------cccCC-
Confidence            8999999999999995       2  456999985   457889999886410                     00122 


Q ss_pred             CCCCCceEEEccCCCEEEEEeC
Q 031020           78 LRGGPQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        78 ~~g~P~~~~LS~DGkrLyVaNs   99 (167)
                         .|..+++|||||+|||+|.
T Consensus       109 ---~p~~i~~spdg~~l~v~n~  127 (361)
T 2oiz_A          109 ---YDGLFRQTTDGKFIVLQNA  127 (361)
T ss_dssp             ---CGGGEEECTTSSEEEEEEE
T ss_pred             ---CcceEEECCCCCEEEEECC
Confidence               3999999999999999993

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.02  E-value=7.2e-10  Score=97.50  Aligned_cols=64  Identities=22%  Similarity=0.327  Sum_probs=51.5

Q ss_pred             EEEEecCCCEEEEEeCC---------CCcEEEEeccCCCCCeEEEEEEeCc--eeecCCceeEeeCCCCCCCCCCccccC
Q 031020            7 DFLISLDDRFLYFSNWL---------HGDIRQYNIEDPKNPVLTGQIWVGG--LFRKGSPVVAVTDDGQPYQSDVPEVQG   75 (167)
Q Consensus         7 dI~IS~DdRfLYVSnw~---------hg~I~qyDIsdp~~pklvg~v~~GG--~~~~~~~v~v~~~~~~~~~p~~~~~~g   75 (167)
                      .|++|||+|+|||+|+.         .+.|.+||   +.+.+++++|.+++  ..                      --|
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD---~~t~~v~~~I~v~~g~r~----------------------~~g  136 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD---PVTLLPTADIELPDAPRF----------------------LVG  136 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC---TTTCCEEEEEEETTCCCC----------------------CBS
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEE---CCCCeEEEEEECCCcccc----------------------ccC
Confidence            49999999999999962         46799888   55688999999875  10                      002


Q ss_pred             ccCCCCCceEEEccCCCEEEEEeC
Q 031020           76 HRLRGGPQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        76 ~~~~g~P~~~~LS~DGkrLyVaNs   99 (167)
                      .+    |+++++|+|||+|||+|.
T Consensus       137 ~~----P~~~a~spDGk~lyVan~  156 (386)
T 3sjl_D          137 TY----PWMTSLTPDGKTLLFYQF  156 (386)
T ss_dssp             CC----GGGEEECTTSSEEEEEEC
T ss_pred             CC----CceEEEcCCCCEEEEEEc
Confidence            34    999999999999999994

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.02  E-value=1.7e-09  Score=88.44  Aligned_cols=78  Identities=10%  Similarity=0.100  Sum_probs=58.1

Q ss_pred             ceeEEE-EecCCCEEEEEeCCCC-----cEEEEeccCCCCCeEEE-EEEeCceeecCCceeEeeCCCCCCCCCCccccCc
Q 031020            4 LITDFL-ISLDDRFLYFSNWLHG-----DIRQYNIEDPKNPVLTG-QIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGH   76 (167)
Q Consensus         4 l~tdI~-IS~DdRfLYVSnw~hg-----~I~qyDIsdp~~pklvg-~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~   76 (167)
                      .+++|. +|||||+||++|++++     .|++|+++.....+.+. .+...+                            
T Consensus       255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~----------------------------  306 (365)
T 1jof_A          255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT----------------------------  306 (365)
T ss_dssp             EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS----------------------------
T ss_pred             ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC----------------------------
Confidence            478899 9999999999999887     89999997423322222 232222                            


Q ss_pred             cCCCCCceEEEcc---CCCEEEEEeCCCccccccccccccccCcEEEEEEeeCC
Q 031020           77 RLRGGPQMIQLSL---DGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSE  127 (167)
Q Consensus        77 ~~~g~P~~~~LS~---DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~  127 (167)
                         .+|+.+++||   ||++|||+|+               +++.+..+++|++
T Consensus       307 ---~~~~~~a~sp~~~dg~~l~v~~~---------------~~~~v~v~~~~~~  342 (365)
T 1jof_A          307 ---SGGHSNAVSPCPWSDEWMAITDD---------------QEGWLEIYRWKDE  342 (365)
T ss_dssp             ---CCTTCCCEEECTTCTTEEEEECS---------------SSCEEEEEEEETT
T ss_pred             ---CCcccceecCCCcCCCEEEEEEc---------------CCCeEEEEEEchh
Confidence               1389999999   8999999993               4567777888764

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.02  E-value=4.1e-09  Score=82.63  Aligned_cols=64  Identities=22%  Similarity=0.341  Sum_probs=52.1

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -+..+.+|+|+++||++++..+.|.+||+.+....+.+.++..++                                .|.
T Consensus       177 ~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~--------------------------------~~~  224 (331)
T 3u4y_A          177 RPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNN--------------------------------LPG  224 (331)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSS--------------------------------CCC
T ss_pred             CccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCC--------------------------------CCc
Confidence            357899999999999999999999999987533223366666543                                299


Q ss_pred             eEEEccCCCEEEEEeC
Q 031020           84 MIQLSLDGKRLYVTNS   99 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNs   99 (167)
                      .+++||||++|||+++
T Consensus       225 ~~~~spdg~~l~v~~~  240 (331)
T 3u4y_A          225 TIVVSRDGSTVYVLTE  240 (331)
T ss_dssp             CEEECTTSSEEEEECS
T ss_pred             eEEECCCCCEEEEEEc
Confidence            9999999999999993

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.99  E-value=6e-10  Score=96.40  Aligned_cols=67  Identities=9%  Similarity=-0.061  Sum_probs=53.5

Q ss_pred             EEEEecCCCEEEEEeC---------CCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCcc
Q 031020            7 DFLISLDDRFLYFSNW---------LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHR   77 (167)
Q Consensus         7 dI~IS~DdRfLYVSnw---------~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~   77 (167)
                      .|.+|||+|+|||+|.         ..+.|.+||   +.+.+.+++|.+||.                    ...+.|..
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD---~~T~~vv~~I~v~~~--------------------~~~~~g~~  125 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFD---PVTFLPIADIELPDA--------------------PRFSVGPR  125 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEEC---TTTCCEEEEEEETTS--------------------CSCCBSCC
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEE---CCCCCEEEEEECCCc--------------------cccccCCC
Confidence            7999999999999994         357899888   556899999999841                    01112233


Q ss_pred             CCCCCceEEEccCCCEEEEEeCC
Q 031020           78 LRGGPQMIQLSLDGKRLYVTNSL  100 (167)
Q Consensus        78 ~~g~P~~~~LS~DGkrLyVaNsl  100 (167)
                          |+++++|||||+|||+|..
T Consensus       126 ----P~~ia~SpDGk~lyVan~~  144 (368)
T 1mda_H          126 ----VHIIGNCASSACLLFFLFG  144 (368)
T ss_dssp             ----TTSEEECTTSSCEEEEECS
T ss_pred             ----cceEEEcCCCCEEEEEccC
Confidence                9999999999999999953

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.99  E-value=7.8e-10  Score=97.93  Aligned_cols=66  Identities=15%  Similarity=0.070  Sum_probs=52.5

Q ss_pred             EEEEecCCCEEEEEeC---------CCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCcc
Q 031020            7 DFLISLDDRFLYFSNW---------LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHR   77 (167)
Q Consensus         7 dI~IS~DdRfLYVSnw---------~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~   77 (167)
                      .|.+|||+|+|||+|.         ..+.|.+||   +.+.+++++|.++|.-                    ....|. 
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD---~~t~~vv~~I~v~g~~--------------------r~~~g~-  177 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFD---PVTFLPIADIELPDAP--------------------RFLVGT-  177 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC---TTTCCEEEEEEETTCC--------------------CCCBSC-
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEE---CCCCcEEEEEECCCcc--------------------ccccCC-
Confidence            8999999999999996         367899888   5568899999998410                    001122 


Q ss_pred             CCCCCceEEEccCCCEEEEEeC
Q 031020           78 LRGGPQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        78 ~~g~P~~~~LS~DGkrLyVaNs   99 (167)
                         .|++|++|+|||+|||+|.
T Consensus       178 ---~P~~~~~spDGk~lyV~n~  196 (426)
T 3c75_H          178 ---YQWMNALTPDNKNLLFYQF  196 (426)
T ss_dssp             ---CGGGSEECTTSSEEEEEEC
T ss_pred             ---CcceEEEcCCCCEEEEEec
Confidence               3999999999999999994

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.97  E-value=1.5e-08  Score=80.58  Aligned_cols=82  Identities=18%  Similarity=0.309  Sum_probs=60.7

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      +..+.+|||++ ||+++...+.|++|++......+....+....                          |    .+|+.
T Consensus       143 ~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~--------------------------g----~~p~~  191 (347)
T 3hfq_A          143 IHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEA--------------------------G----FGPRH  191 (347)
T ss_dssp             EEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCT--------------------------T----CCEEE
T ss_pred             ceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCC--------------------------C----CCCce
Confidence            66799999999 99999999999999998433333333222110                          1    13999


Q ss_pred             EEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCee
Q 031020           85 IQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA  132 (167)
Q Consensus        85 ~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~  132 (167)
                      +++||||++|||+++               .+..+..++++..+|.++
T Consensus       192 ~~~spdg~~l~v~~~---------------~~~~v~v~~~~~~~g~~~  224 (347)
T 3hfq_A          192 LVFSPDGQYAFLAGE---------------LSSQIASLKYDTQTGAFT  224 (347)
T ss_dssp             EEECTTSSEEEEEET---------------TTTEEEEEEEETTTTEEE
T ss_pred             EEECCCCCEEEEEeC---------------CCCEEEEEEecCCCCceE
Confidence            999999999999994               455677788887777664

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.83  E-value=4.4e-08  Score=76.65  Aligned_cols=75  Identities=7%  Similarity=0.133  Sum_probs=60.5

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+..|.+|+|+++||+++...+.|.+||+..   .+++..+.++.                                 |.
T Consensus       232 ~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~---~~~~~~~~~~~---------------------------------~~  275 (353)
T 3vgz_A          232 FFINISLDTARQRAFITDSKAAEVLVVDTRN---GNILAKVAAPE---------------------------------SL  275 (353)
T ss_dssp             CEEEEEEETTTTEEEEEESSSSEEEEEETTT---CCEEEEEECSS---------------------------------CC
T ss_pred             ccceEEECCCCCEEEEEeCCCCEEEEEECCC---CcEEEEEEcCC---------------------------------Cc
Confidence            4678999999999999999999999999754   66777777654                                 77


Q ss_pred             eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe
Q 031020           84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM  131 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l  131 (167)
                      .+.+|+||++|||+++               .+..+..+|.  .+|.+
T Consensus       276 ~~~~s~dg~~l~v~~~---------------~~~~v~~~d~--~~~~~  306 (353)
T 3vgz_A          276 AVLFNPARNEAYVTHR---------------QAGKVSVIDA--KSYKV  306 (353)
T ss_dssp             CEEEETTTTEEEEEET---------------TTTEEEEEET--TTTEE
T ss_pred             eEEECCCCCEEEEEEC---------------CCCeEEEEEC--CCCeE
Confidence            8999999999999993               3556766766  55654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.80  E-value=4.7e-08  Score=76.49  Aligned_cols=78  Identities=18%  Similarity=0.215  Sum_probs=59.6

Q ss_pred             eEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceE
Q 031020            6 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMI   85 (167)
Q Consensus         6 tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~   85 (167)
                      ..+.+|+|+++||++++..+.|.+||+..   .++...+..++                            .    |..+
T Consensus       275 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~---~~~~~~~~~~~----------------------------~----~~~~  319 (353)
T 3vgz_A          275 LAVLFNPARNEAYVTHRQAGKVSVIDAKS---YKVVKTFDTPT----------------------------H----PNSL  319 (353)
T ss_dssp             CCEEEETTTTEEEEEETTTTEEEEEETTT---TEEEEEEECCS----------------------------E----EEEE
T ss_pred             ceEEECCCCCEEEEEECCCCeEEEEECCC---CeEEEEEecCC----------------------------C----CCeE
Confidence            46899999999999999999999999654   67888887655                            2    9999


Q ss_pred             EEccCCCEEEEEeCCCccccccccccccccCcEEEEEE
Q 031020           86 QLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQID  123 (167)
Q Consensus        86 ~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~d  123 (167)
                      ++|+||++|||+|.--...+..-     .....+++++
T Consensus       320 ~~s~dg~~l~v~~~~~~~~~~~~-----~~~~~v~~i~  352 (353)
T 3vgz_A          320 ALSADGKTLYVSVKQKSTKQQEA-----TQPDDVIRIA  352 (353)
T ss_dssp             EECTTSCEEEEEEECCCBTTBCC-----SSCEEEEEEE
T ss_pred             EEcCCCCEEEEEEcccccccccc-----cCCCcEEEEe
Confidence            99999999999996322222111     3456666665

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.79  E-value=3.5e-08  Score=89.35  Aligned_cols=62  Identities=18%  Similarity=0.269  Sum_probs=52.9

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+..+.+|+|+|+|||+|+ .+.|.+||+. ..+.+++.+|.+|.                            .    |+
T Consensus       198 ~p~~v~~SpDGr~lyv~~~-dg~V~viD~~-~~t~~~v~~i~~G~----------------------------~----P~  243 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGR-DGKVNMIDLW-MKEPTTVAEIKIGS----------------------------E----AR  243 (567)
T ss_dssp             CEEEEEECTTSCEEEEEET-TSEEEEEETT-SSSCCEEEEEECCS----------------------------E----EE
T ss_pred             CccceEECCCCCEEEEEcC-CCeEEEEECC-CCCCcEeEEEecCC----------------------------C----Cc
Confidence            4567999999999999996 6799999975 23578889999876                            2    99


Q ss_pred             eEEEc----cCCCEEEEEeC
Q 031020           84 MIQLS----LDGKRLYVTNS   99 (167)
Q Consensus        84 ~~~LS----~DGkrLyVaNs   99 (167)
                      .+++|    ||||+|||+|.
T Consensus       244 ~ia~s~~~~pDGk~l~v~n~  263 (567)
T 1qks_A          244 SIETSKMEGWEDKYAIAGAY  263 (567)
T ss_dssp             EEEECCSTTCTTTEEEEEEE
T ss_pred             eeEEccccCCCCCEEEEEEc
Confidence            99999    69999999994

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.73  E-value=7.4e-08  Score=85.42  Aligned_cols=61  Identities=15%  Similarity=0.154  Sum_probs=52.3

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      +..+++|||+|+||++++. +.|.+||+. ..+.+.+.++..|.                            .    |+.
T Consensus       181 ~~~v~~spdg~~l~v~~~d-~~V~v~D~~-~~t~~~~~~i~~g~----------------------------~----p~~  226 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRD-ARIDMIDLW-AKEPTKVAEIKIGI----------------------------E----ARS  226 (543)
T ss_dssp             EEEEEECTTSCEEEEEETT-SEEEEEETT-SSSCEEEEEEECCS----------------------------E----EEE
T ss_pred             cceEEECCCCCEEEEECCC-CeEEEEECc-CCCCcEEEEEecCC----------------------------C----cce
Confidence            4568899999999999998 999999984 24578888888654                            2    999


Q ss_pred             EEEcc----CCCEEEEEeC
Q 031020           85 IQLSL----DGKRLYVTNS   99 (167)
Q Consensus        85 ~~LS~----DGkrLyVaNs   99 (167)
                      +++||    ||++|||+|.
T Consensus       227 va~sp~~~~dg~~l~v~~~  245 (543)
T 1nir_A          227 VESSKFKGYEDRYTIAGAY  245 (543)
T ss_dssp             EEECCSTTCTTTEEEEEEE
T ss_pred             EEeCCCcCCCCCEEEEEEc
Confidence            99999    9999999994

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.72  E-value=9.5e-08  Score=73.99  Aligned_cols=84  Identities=18%  Similarity=0.253  Sum_probs=60.3

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEE--EEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTG--QIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg--~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      .+..+.+|+|+++||+++...+.|.+||+......+...  .+....                          |    ..
T Consensus       130 ~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~--------------------------~----~~  179 (343)
T 1ri6_A          130 GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE--------------------------G----AG  179 (343)
T ss_dssp             TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST--------------------------T----CC
T ss_pred             CceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCC--------------------------C----CC
Confidence            467789999999999999889999999997533333222  222110                          1    23


Q ss_pred             CceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCee
Q 031020           82 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA  132 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~  132 (167)
                      |+.+++||||++||++++               ....+..+|++..+|.++
T Consensus       180 ~~~~~~~pdg~~l~~~~~---------------~~~~i~~~~~~~~~g~~~  215 (343)
T 1ri6_A          180 PRHMVFHPNEQYAYCVNE---------------LNSSVDVWELKDPHGNIE  215 (343)
T ss_dssp             EEEEEECTTSSEEEEEET---------------TTTEEEEEESSCTTSCCE
T ss_pred             cceEEECCCCCEEEEEeC---------------CCCEEEEEEecCCCCcEE
Confidence            999999999999999983               345666677776666553

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.70  E-value=9.9e-08  Score=79.43  Aligned_cols=74  Identities=5%  Similarity=-0.005  Sum_probs=58.1

Q ss_pred             EEEecCCCEEEEEeCC----------CCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCcc
Q 031020            8 FLISLDDRFLYFSNWL----------HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHR   77 (167)
Q Consensus         8 I~IS~DdRfLYVSnw~----------hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~   77 (167)
                      +++|+|+++|||+|-.          .+.|++||+.   +.+.+.++++|+                             
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~---t~~~v~~i~~~~-----------------------------  306 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK---TKQRVARIPGRD-----------------------------  306 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETT---TTEEEEEEECTT-----------------------------
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECC---CCcEEEEEecCC-----------------------------
Confidence            7899999999999751          3579999954   478888888765                             


Q ss_pred             CCCCCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCc
Q 031020           78 LRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPN  136 (167)
Q Consensus        78 ~~g~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~  136 (167)
                          |..+++||||++||++|               .  +.+..+|.  ++|.|++-..
T Consensus       307 ----p~~ia~spdg~~l~v~n---------------~--~~v~v~D~--~t~~l~~~~~  342 (361)
T 2oiz_A          307 ----ALSMTIDQQRNLMLTLD---------------G--GNVNVYDI--SQPEPKLLRT  342 (361)
T ss_dssp             ----CCEEEEETTTTEEEEEC---------------S--SCEEEEEC--SSSSCEEEEE
T ss_pred             ----eeEEEECCCCCEEEEeC---------------C--CeEEEEEC--CCCcceeeEE
Confidence                99999999999999999               3  45666655  8886654433

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.66  E-value=2.3e-07  Score=72.66  Aligned_cols=65  Identities=22%  Similarity=0.269  Sum_probs=48.1

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCc-EEEEeccCCCCCeEE-EEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGD-IRQYNIEDPKNPVLT-GQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~-I~qyDIsdp~~pklv-g~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      -+..+.+|||+++||+++...+. |.+|++......... .++...                           |.    +
T Consensus       129 ~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~---------------------------~~----~  177 (331)
T 3u4y_A          129 DAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG---------------------------GT----R  177 (331)
T ss_dssp             TEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS---------------------------SS----S
T ss_pred             CccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC---------------------------CC----C
Confidence            45789999999999999999888 999999853221111 111111                           12    3


Q ss_pred             CceEEEccCCCEEEEEeC
Q 031020           82 PQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaNs   99 (167)
                      |+.+++||||++|||+++
T Consensus       178 ~~~~~~spdg~~l~v~~~  195 (331)
T 3u4y_A          178 PFNITFTPDGNFAFVANL  195 (331)
T ss_dssp             EEEEEECTTSSEEEEEET
T ss_pred             ccceEECCCCCEEEEEeC
Confidence            999999999999999994

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.62  E-value=1.2e-07  Score=83.82  Aligned_cols=72  Identities=15%  Similarity=0.093  Sum_probs=60.0

Q ss_pred             EEEecCCCEEEEEeCC---------CCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccC
Q 031020            8 FLISLDDRFLYFSNWL---------HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRL   78 (167)
Q Consensus         8 I~IS~DdRfLYVSnw~---------hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~   78 (167)
                      |.+|+|+++|||+|..         .++|.++|.   ++.+.+.+|++|+                            . 
T Consensus       324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~---~T~kvv~~I~vg~----------------------------~-  371 (426)
T 3c75_H          324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNA---ETGERINKIELGH----------------------------E-  371 (426)
T ss_dssp             EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEET---TTCCEEEEEEEEE----------------------------E-
T ss_pred             eEEcCCCCEEEEEecccccccccCCCCEEEEEEC---CCCeEEEEEECCC----------------------------C-
Confidence            7899999999999852         357999994   5588999999987                            3 


Q ss_pred             CCCCceEEEccCCC-EEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe
Q 031020           79 RGGPQMIQLSLDGK-RLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM  131 (167)
Q Consensus        79 ~g~P~~~~LS~DGk-rLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l  131 (167)
                         |..+.+|+||+ +|||+|.               .++.+..||.  .+++.
T Consensus       372 ---P~gia~spDg~~~lyv~n~---------------~s~~VsVID~--~t~kv  405 (426)
T 3c75_H          372 ---IDSINVSQDAEPLLYALSA---------------GTQTLHIYDA--ATGEE  405 (426)
T ss_dssp             ---ECEEEECCSSSCEEEEEET---------------TTTEEEEEET--TTCCE
T ss_pred             ---cCeEEEccCCCEEEEEEcC---------------CCCeEEEEEC--CCCCE
Confidence               99999999999 9999992               4667777887  67765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.61  E-value=2.2e-07  Score=84.17  Aligned_cols=103  Identities=8%  Similarity=0.020  Sum_probs=67.3

Q ss_pred             ceeEEEEe----cCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCcee------ecC--------------------
Q 031020            4 LITDFLIS----LDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLF------RKG--------------------   53 (167)
Q Consensus         4 l~tdI~IS----~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~------~~~--------------------   53 (167)
                      -+..|.+|    ||||+|||+|...+.|.+||   .++.+++.+|+++|.-      +..                    
T Consensus       241 ~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD---~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~  317 (567)
T 1qks_A          241 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMD---GETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK  317 (567)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEETTEEEEEE---TTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             CCceeEEccccCCCCCEEEEEEccCCeEEEEE---CCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec
Confidence            35678999    79999999999999999998   4558888999988731      111                    


Q ss_pred             --CceeEeeCCCCCCCCCC-ccccCccCCCCCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCC
Q 031020           54 --SPVVAVTDDGQPYQSDV-PEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGG  130 (167)
Q Consensus        54 --~~v~v~~~~~~~~~p~~-~~~~g~~~~g~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~  130 (167)
                        +.|.+..-.+.. .+.. ..-.|+.    |+.+.+|+|||+|||||.               .++.|..+|.  .+|+
T Consensus       318 ~~g~v~~vd~~~~~-~~~v~~i~~~~~----~~d~~~~pdgr~~~va~~---------------~sn~V~ViD~--~t~k  375 (567)
T 1qks_A          318 ETGKILLVDYTDLN-NLKTTEISAERF----LHDGGLDGSHRYFITAAN---------------ARNKLVVIDT--KEGK  375 (567)
T ss_dssp             TTTEEEEEETTCSS-EEEEEEEECCSS----EEEEEECTTSCEEEEEEG---------------GGTEEEEEET--TTTE
T ss_pred             CCCeEEEEecCCCc-cceeeeeecccc----ccCceECCCCCEEEEEeC---------------CCCeEEEEEC--CCCc
Confidence              111111111100 0000 1112444    889999999999999993               3556666555  7776


Q ss_pred             e
Q 031020          131 M  131 (167)
Q Consensus       131 l  131 (167)
                      +
T Consensus       376 l  376 (567)
T 1qks_A          376 L  376 (567)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.60  E-value=1e-07  Score=83.82  Aligned_cols=56  Identities=16%  Similarity=0.041  Sum_probs=48.9

Q ss_pred             EEEecCCCEEEEEeCC----CCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            8 FLISLDDRFLYFSNWL----HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         8 I~IS~DdRfLYVSnw~----hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+-.||++.|||+|+.    .+.|.++|   +.+.+++++|++|.                            .    |.
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD---~~t~~v~~~I~vG~----------------------------~----P~   82 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVID---GEAGRVIGMIDGGF----------------------------L----PN   82 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEE---TTTTEEEEEEEECS----------------------------S----CE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEE---CCCCeEEEEEECCC----------------------------C----Cc
Confidence            4568999999999997    67899888   55689999999976                            2    97


Q ss_pred             eEEEccCCCEEEEEeC
Q 031020           84 MIQLSLDGKRLYVTNS   99 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNs   99 (167)
                       +.+|||||+|||+|+
T Consensus        83 -va~spDG~~lyVan~   97 (386)
T 3sjl_D           83 -PVVADDGSFIAHAST   97 (386)
T ss_dssp             -EEECTTSSCEEEEEE
T ss_pred             -EEECCCCCEEEEEcc
Confidence             999999999999995

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.60  E-value=2.5e-07  Score=84.03  Aligned_cols=41  Identities=22%  Similarity=0.370  Sum_probs=35.5

Q ss_pred             ceeEEEEecCCCEEEEEeCC------------------CCcEEEEeccCCCCCeEEEEEEeC
Q 031020            4 LITDFLISLDDRFLYFSNWL------------------HGDIRQYNIEDPKNPVLTGQIWVG   47 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~------------------hg~I~qyDIsdp~~pklvg~v~~G   47 (167)
                      +.=|+.+|||++.+|+|+|+                  .+.|.+||++.   .+++.++.+|
T Consensus       189 ~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~---~k~~~tI~vg  247 (462)
T 2ece_A          189 LAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK---RKRIHSLTLG  247 (462)
T ss_dssp             CCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT---TEEEEEEESC
T ss_pred             ccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC---CcEeeEEecC
Confidence            34478899999999999997                  79999999874   5888999997

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.58  E-value=4.2e-07  Score=80.61  Aligned_cols=63  Identities=10%  Similarity=-0.019  Sum_probs=52.3

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -++.|.+|+|++++|||+...|.|++||+++....+ +.++..|.                            .    |+
T Consensus       281 ~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~-~~~i~~~~----------------------------~----~~  327 (543)
T 1nir_A          281 RVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT-VTSIGAAP----------------------------F----LH  327 (543)
T ss_dssp             CEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE-EEEEECCS----------------------------S----CC
T ss_pred             ceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce-eEEeccCc----------------------------C----cc
Confidence            468899999999999999999999999998755544 33454332                            3    99


Q ss_pred             eEEEccCCCEEEEEeC
Q 031020           84 MIQLSLDGKRLYVTNS   99 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNs   99 (167)
                      .+.+||||++|||+|+
T Consensus       328 ~~~~spdg~~l~va~~  343 (543)
T 1nir_A          328 DGGWDSSHRYFMTAAN  343 (543)
T ss_dssp             CEEECTTSCEEEEEEG
T ss_pred             CceECCCCCEEEEEec
Confidence            9999999999999993

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.57  E-value=6e-07  Score=76.19  Aligned_cols=72  Identities=15%  Similarity=0.132  Sum_probs=58.5

Q ss_pred             EEEecCCCEEEEEeC---------CCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccC
Q 031020            8 FLISLDDRFLYFSNW---------LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRL   78 (167)
Q Consensus         8 I~IS~DdRfLYVSnw---------~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~   78 (167)
                      +.+|+|++.|||++-         ..++|+++|.   ++.+.+.+|++|+                            . 
T Consensus       272 ~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~---~t~~vv~~i~~g~----------------------------~-  319 (373)
T 2mad_H          272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG---LVGQTSSQISLGH----------------------------D-  319 (373)
T ss_pred             EEECCCCCEEEEEeccCCcccccCCCCeEEEEEC---CCCEEEEEEECCC----------------------------C-
Confidence            789999999999874         2368999984   5588999999877                            2 


Q ss_pred             CCCCceEEEccCCC-EEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe
Q 031020           79 RGGPQMIQLSLDGK-RLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM  131 (167)
Q Consensus        79 ~g~P~~~~LS~DGk-rLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l  131 (167)
                         |..+++|+||+ +||++|.               ..+.+..+|.  ++++.
T Consensus       320 ---p~~i~~s~Dg~~~l~v~~~---------------~~~~V~ViD~--~t~~v  353 (373)
T 2mad_H          320 ---VDAISVAQDGGPDLYALSA---------------GTEVLHIYDA--GAGDQ  353 (373)
T ss_pred             ---cCeEEECCCCCeEEEEEcC---------------CCCeEEEEEC--CCCCE
Confidence               99999999999 8999992               3457777887  66765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.56  E-value=8.5e-07  Score=69.00  Aligned_cols=71  Identities=14%  Similarity=0.150  Sum_probs=55.4

Q ss_pred             ceeEEEEec-CCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            4 LITDFLISL-DDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         4 l~tdI~IS~-DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .+..+.+|+ |+++||++   .+.|.+||+..   .++...+..++                            .    |
T Consensus       256 ~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~---~~~~~~~~~~~----------------------------~----~  297 (349)
T 1jmx_B          256 LYFTGLRSPKDPNQIYGV---LNRLAKYDLKQ---RKLIKAANLDH----------------------------T----Y  297 (349)
T ss_dssp             CEEEEEECSSCTTEEEEE---ESEEEEEETTT---TEEEEEEECSS----------------------------C----C
T ss_pred             cceeeEecCCCCCEEEEE---cCeEEEEECcc---CeEEEEEcCCC----------------------------C----c
Confidence            456889999 99999999   78999999664   67777776554                            2    8


Q ss_pred             ceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCC
Q 031020           83 QMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGG  130 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~  130 (167)
                      ..+++|+||++||+++               . ...+..+|.  +++.
T Consensus       298 ~~~~~s~dg~~l~~~~---------------~-~~~v~v~d~--~~~~  327 (349)
T 1jmx_B          298 YCVAFDKKGDKLYLGG---------------T-FNDLAVFNP--DTLE  327 (349)
T ss_dssp             CEEEECSSSSCEEEES---------------B-SSEEEEEET--TTTE
T ss_pred             cceEECCCCCEEEEec---------------C-CCeEEEEec--cccc
Confidence            8999999999999965               2 356666776  5554

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.53  E-value=1.7e-07  Score=81.00  Aligned_cols=85  Identities=13%  Similarity=0.047  Sum_probs=64.1

Q ss_pred             EEEecCCCEEEEEeC---C-----CCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCC
Q 031020            8 FLISLDDRFLYFSNW---L-----HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR   79 (167)
Q Consensus         8 I~IS~DdRfLYVSnw---~-----hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~   79 (167)
                      +.+|+|++.|||+++   +     .+.+.++|   .++.+.+.+|++|+                            .  
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD---~~t~~vv~~i~vg~----------------------------~--  315 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVT---ASVGQTSGPISNGH----------------------------D--  315 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEE---SSSCCEEECCEEEE----------------------------E--
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEE---CCCCeEEEEEECCC----------------------------C--
Confidence            789999999999987   3     35677888   45588999999987                            2  


Q ss_pred             CCCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCCC
Q 031020           80 GGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDG  147 (167)
Q Consensus        80 g~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~g  147 (167)
                        |..|.+|+||++|||||.        +      ..+.+..||.  .+++..  .  .|.-++.|.|
T Consensus       316 --p~gi~~s~Dg~~l~va~~--------~------~~~~VsVID~--~t~kvv--~--~I~vg~~P~~  361 (368)
T 1mda_H          316 --SDAIIAAQDGASDNYANS--------A------GTEVLDIYDA--ASDQDQ--S--SVELDKGPES  361 (368)
T ss_dssp             --ECEEEECCSSSCEEEEEE--------T------TTTEEEEEES--SSCEEE--E--ECCCCSCCCE
T ss_pred             --cceEEECCCCCEEEEEcc--------C------CCCeEEEEEC--CCCcEE--E--EEECCCCCCE
Confidence              999999999999999992        1      3567777887  666542  2  2344566665

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.53  E-value=4e-07  Score=74.23  Aligned_cols=70  Identities=13%  Similarity=0.057  Sum_probs=52.9

Q ss_pred             CceeEEEEecCCCEEEEEeCCC----------CcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCcc
Q 031020            3 GLITDFLISLDDRFLYFSNWLH----------GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPE   72 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~h----------g~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~   72 (167)
                      .-+.+|.+++||| |||++++.          +.|.+||   +++.++..++.+..                        
T Consensus       172 ~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id---~~t~~v~~~~~~~~------------------------  223 (328)
T 3dsm_A          172 IQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRID---AETFTVEKQFKFKL------------------------  223 (328)
T ss_dssp             SCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEE---TTTTEEEEEEECCT------------------------
T ss_pred             CCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEE---CCCCeEEEEEecCC------------------------
Confidence            3457899999998 78888875          7899998   44577777776632                        


Q ss_pred             ccCccCCCCCceEEEccCCCEEEEEeCCCccccc
Q 031020           73 VQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDC  106 (167)
Q Consensus        73 ~~g~~~~g~P~~~~LS~DGkrLyVaNsl~s~wD~  106 (167)
                        |..    |+.+++|+||++|||+|+-...||.
T Consensus       224 --g~~----p~~la~~~d~~~lyv~~~~v~~~d~  251 (328)
T 3dsm_A          224 --GDW----PSEVQLNGTRDTLYWINNDIWRMPV  251 (328)
T ss_dssp             --TCC----CEEEEECTTSCEEEEESSSEEEEET
T ss_pred             --CCC----ceeEEEecCCCEEEEEccEEEEEEC
Confidence              123    9999999999999999964444443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.51  E-value=8.6e-07  Score=68.96  Aligned_cols=68  Identities=24%  Similarity=0.238  Sum_probs=52.6

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -+..+.+|+|+++||+++...+.|.+||+..   .+...++.+++.                     +..+|..    |.
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t---~~~~~~~~~~~~---------------------~~~~~~~----~~   95 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT---CKNTFHANLSSV---------------------PGEVGRS----MY   95 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEEEESCCS---------------------TTEEEEC----SS
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCC---CcEEEEEEcccc---------------------ccccccc----cc
Confidence            4678999999999999999999999999653   667766665430                     0011223    89


Q ss_pred             eEEEccCCCEEEEEeC
Q 031020           84 MIQLSLDGKRLYVTNS   99 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNs   99 (167)
                      .+++||||++||++++
T Consensus        96 ~~~~spdg~~l~~~~~  111 (349)
T 1jmx_B           96 SFAISPDGKEVYATVN  111 (349)
T ss_dssp             CEEECTTSSEEEEEEE
T ss_pred             ceEECCCCCEEEEEcc
Confidence            9999999999999994

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.49  E-value=7.4e-07  Score=77.12  Aligned_cols=107  Identities=18%  Similarity=0.172  Sum_probs=72.2

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      +.+|++++++.+|||+.|..+.|.+|+...   .++.....+++                              .++|+.
T Consensus       228 p~giavdp~~g~lyv~d~~~~~V~~~~~~~---~~~~~~~~~~~------------------------------~~~P~g  274 (430)
T 3tc9_A          228 CNGAETHPINGELYFNSWNAGQVFRYDFTT---QETTPLFTIQD------------------------------SGWEFH  274 (430)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEEETTT---TEEEEEEECSS------------------------------SSCCEE
T ss_pred             ceEEEEeCCCCEEEEEECCCCEEEEEECCC---CcEEEEEEcCC------------------------------CCccee
Confidence            467889998889999999999999999653   33322222222                              124999


Q ss_pred             EEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccC--CCCCCcceeeeecCCC
Q 031020           85 IQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEA--EPDGPALAHEMRYPGG  159 (167)
Q Consensus        85 ~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~--~p~gp~~~he~r~pgg  159 (167)
                      +++++||++|||+++               .+..|.+++.|..+|.+..-..|.=.++.  -.+|+...-++..|.+
T Consensus       275 ia~~pdG~~lyv~d~---------------~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~  336 (430)
T 3tc9_A          275 IQFHPSGNYAYIVVV---------------NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQ  336 (430)
T ss_dssp             EEECTTSSEEEEEET---------------TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEE
T ss_pred             EEEcCCCCEEEEEEC---------------CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcc
Confidence            999999999999993               57899999999877765322222212222  1245545556667763

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.47  E-value=1.8e-06  Score=66.61  Aligned_cols=66  Identities=17%  Similarity=0.074  Sum_probs=51.6

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -+..+.+|+|+++||+++...+.|.+||+..   .+++.++..++.                      ...+..    |.
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~---~~~~~~~~~~~~----------------------~~~~~~----~~   85 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVT---GETLGRIDLSTP----------------------EERVKS----LF   85 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTT---CCEEEEEECCBT----------------------TEEEEC----TT
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCC---CCeEeeEEcCCc----------------------cccccc----cc
Confidence            3678999999999999999999999999764   566666665430                      001122    89


Q ss_pred             eEEEccCCCEEEEEe
Q 031020           84 MIQLSLDGKRLYVTN   98 (167)
Q Consensus        84 ~~~LS~DGkrLyVaN   98 (167)
                      .+++|+||++||+++
T Consensus        86 ~~~~s~dg~~l~~~~  100 (337)
T 1pby_B           86 GAALSPDGKTLAIYE  100 (337)
T ss_dssp             CEEECTTSSEEEEEE
T ss_pred             ceEECCCCCEEEEEe
Confidence            999999999999996

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.45  E-value=7.2e-07  Score=74.76  Aligned_cols=54  Identities=22%  Similarity=0.172  Sum_probs=45.5

Q ss_pred             EEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEEc
Q 031020            9 LISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLS   88 (167)
Q Consensus         9 ~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS   88 (167)
                      -++++++.||+++|..+.|.+||.   ++.+++++++.|.                                 |+-..|+
T Consensus        70 Gi~~~g~~lyv~t~~~~~v~viD~---~t~~v~~~i~~g~---------------------------------~~g~glt  113 (266)
T 2iwa_A           70 GLTLLNEKLYQVVWLKNIGFIYDR---RTLSNIKNFTHQM---------------------------------KDGWGLA  113 (266)
T ss_dssp             EEEEETTEEEEEETTCSEEEEEET---TTTEEEEEEECCS---------------------------------SSCCEEE
T ss_pred             EEEEeCCEEEEEEecCCEEEEEEC---CCCcEEEEEECCC---------------------------------CCeEEEE
Confidence            355568899999999999999994   4688999998872                                 5557799


Q ss_pred             cCCCEEEEEe
Q 031020           89 LDGKRLYVTN   98 (167)
Q Consensus        89 ~DGkrLyVaN   98 (167)
                      +||++|||||
T Consensus       114 ~Dg~~l~vs~  123 (266)
T 2iwa_A          114 TDGKILYGSD  123 (266)
T ss_dssp             ECSSSEEEEC
T ss_pred             ECCCEEEEEC
Confidence            9999999999

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.43  E-value=2.8e-06  Score=65.48  Aligned_cols=72  Identities=8%  Similarity=0.088  Sum_probs=55.6

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+..|.+|+|+++||++   .+.|.+||+..   .++...+..+.                            .    |.
T Consensus       242 ~~~~~~~s~dg~~l~~~---~~~v~~~d~~~---~~~~~~~~~~~----------------------------~----~~  283 (337)
T 1pby_B          242 FYFSTAVNPAKTRAFGA---YNVLESFDLEK---NASIKRVPLPH----------------------------S----YY  283 (337)
T ss_dssp             CEEEEEECTTSSEEEEE---ESEEEEEETTT---TEEEEEEECSS----------------------------C----CC
T ss_pred             ceeeEEECCCCCEEEEe---CCeEEEEECCC---CcCcceecCCC----------------------------c----ee
Confidence            35679999999999999   48999999754   66776666543                            2    89


Q ss_pred             eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe
Q 031020           84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM  131 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l  131 (167)
                      .+++|+||++||+++               . ...+..+|+  ++|..
T Consensus       284 ~~~~s~dg~~l~~~~---------------~-~~~i~v~d~--~~~~~  313 (337)
T 1pby_B          284 SVNVSTDGSTVWLGG---------------A-LGDLAAYDA--ETLEK  313 (337)
T ss_dssp             EEEECTTSCEEEEES---------------B-SSEEEEEET--TTCCE
T ss_pred             eEEECCCCCEEEEEc---------------C-CCcEEEEEC--cCCcE
Confidence            999999999999986               2 345666766  56654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.42  E-value=1.2e-06  Score=70.00  Aligned_cols=45  Identities=22%  Similarity=0.285  Sum_probs=34.7

Q ss_pred             CceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEecc
Q 031020           82 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFE  142 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~  142 (167)
                      |+.+++|+||++|||+++               ....|.++|+|+++|.+. +...+.++.
T Consensus       151 pngi~~spdg~~lyv~~~---------------~~~~i~~~~~d~~~G~~~-~~~~~~~~~  195 (297)
T 3g4e_A          151 SNGLDWSLDHKIFYYIDS---------------LSYSVDAFDYDLQTGQIS-NRRSVYKLE  195 (297)
T ss_dssp             EEEEEECTTSCEEEEEEG---------------GGTEEEEEEECTTTCCEE-EEEEEEECC
T ss_pred             ccceEEcCCCCEEEEecC---------------CCCcEEEEeccCCCCccc-CcEEEEECC
Confidence            999999999999999994               456788899988888763 334445553

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.41  E-value=1.1e-06  Score=68.67  Aligned_cols=62  Identities=13%  Similarity=0.214  Sum_probs=46.2

Q ss_pred             ceeEEEEecCCCEEEEEeCC--CCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWL--HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~--hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      .+.+|++++++++||++++.  .+.|.+++++. ...+.   +...+                              ...
T Consensus       123 ~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~---~~~~~------------------------------~~~  168 (267)
T 1npe_A          123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRI---LAQDN------------------------------LGL  168 (267)
T ss_dssp             SEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEE---EECTT------------------------------CSC
T ss_pred             CccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEE---EEECC------------------------------CCC
Confidence            46899999999999999998  67899998753 22221   11111                              013


Q ss_pred             CceEEEccCCCEEEEEeC
Q 031020           82 PQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaNs   99 (167)
                      |+.+++++||++|||+++
T Consensus       169 P~gia~d~~~~~lyv~d~  186 (267)
T 1npe_A          169 PNGLTFDAFSSQLCWVDA  186 (267)
T ss_dssp             EEEEEEETTTTEEEEEET
T ss_pred             CcEEEEcCCCCEEEEEEC
Confidence            999999999999999995

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.41  E-value=2.8e-07  Score=85.81  Aligned_cols=64  Identities=14%  Similarity=0.157  Sum_probs=50.7

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCC---------CCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCcccc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPK---------NPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQ   74 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~---------~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~   74 (167)
                      -+-.|.+||||||+||+|.+.+.|.+||+..-.         +-+++.++.+|-                          
T Consensus       278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~--------------------------  331 (595)
T 1fwx_A          278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL--------------------------  331 (595)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS--------------------------
T ss_pred             CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC--------------------------
Confidence            345689999999999999999999999998410         112455555543                          


Q ss_pred             CccCCCCCceEEEccCCCEEEEEeCC
Q 031020           75 GHRLRGGPQMIQLSLDGKRLYVTNSL  100 (167)
Q Consensus        75 g~~~~g~P~~~~LS~DGkrLyVaNsl  100 (167)
                            +|+.+++++|| ++|++|.|
T Consensus       332 ------gP~h~aF~~dG-~aY~t~~l  350 (595)
T 1fwx_A          332 ------GPLHTAFDGRG-NAYTSLFL  350 (595)
T ss_dssp             ------CEEEEEECTTS-EEEEEETT
T ss_pred             ------CcceEEECCCC-eEEEEEec
Confidence                  49999999999 99999964

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.37  E-value=4.5e-06  Score=66.73  Aligned_cols=61  Identities=25%  Similarity=0.339  Sum_probs=50.7

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -+..+.+|+|+++||+++...+.|++||+..   .+....+..+.                                .|.
T Consensus       117 ~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~---~~~~~~~~~~~--------------------------------~~~  161 (391)
T 1l0q_A          117 SPLGLALSPDGKKLYVTNNGDKTVSVINTVT---KAVINTVSVGR--------------------------------SPK  161 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEEEECCS--------------------------------SEE
T ss_pred             CcceEEECCCCCEEEEEeCCCCEEEEEECCC---CcEEEEEecCC--------------------------------Ccc
Confidence            4678999999999999999999999999764   56665555433                                289


Q ss_pred             eEEEccCCCEEEEEeC
Q 031020           84 MIQLSLDGKRLYVTNS   99 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNs   99 (167)
                      .+++++||++||++++
T Consensus       162 ~~~~~~dg~~l~~~~~  177 (391)
T 1l0q_A          162 GIAVTPDGTKVYVANF  177 (391)
T ss_dssp             EEEECTTSSEEEEEET
T ss_pred             eEEECCCCCEEEEEeC
Confidence            9999999999999985

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.36  E-value=2.3e-06  Score=71.65  Aligned_cols=86  Identities=19%  Similarity=0.252  Sum_probs=61.3

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      +-.+... |+ .||+++|..++|++.|   +++.+.+++|.++|....                  ....++.-...|+-
T Consensus       154 ~nele~~-dg-~lyvn~~~~~~V~vID---~~tg~V~~~I~~~g~~~~------------------~~~~~~~~~~v~nG  210 (266)
T 2iwa_A          154 LNELEYI-NG-EVWANIWQTDCIARIS---AKDGTLLGWILLPNLRKK------------------LIDEGFRDIDVLNG  210 (266)
T ss_dssp             EEEEEEE-TT-EEEEEETTSSEEEEEE---TTTCCEEEEEECHHHHHH------------------HHHTTCTTCCCEEE
T ss_pred             ceeEEEE-CC-EEEEecCCCCeEEEEE---CCCCcEEEEEECCCcccc------------------cccccccccCceEE
Confidence            3455666 55 8999999999999888   667999999999763100                  00000011123899


Q ss_pred             EEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCC
Q 031020           85 IQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEK  128 (167)
Q Consensus        85 ~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~  128 (167)
                      +++++||+||||||               +....|+.+++.+..
T Consensus       211 Ia~~~~~~~lfVTg---------------k~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          211 IAWDQENKRIFVTG---------------KLWPKLFEIKLHLVR  239 (266)
T ss_dssp             EEEETTTTEEEEEE---------------TTCSEEEEEEEEECC
T ss_pred             EEEcCCCCEEEEEC---------------CCCCeEEEEEEeccc
Confidence            99999999999999               457788888886543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.36  E-value=3.9e-07  Score=74.30  Aligned_cols=98  Identities=12%  Similarity=0.135  Sum_probs=67.4

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEE--EEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQ--IWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~--v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      -+..|++|+|+++||++|.   .|.+||...   .++...  +..+                           |.    .
T Consensus       226 ~p~~la~~~d~~~lyv~~~---~v~~~d~~t---~~~~~~~~~~~~---------------------------~~----~  268 (328)
T 3dsm_A          226 WPSEVQLNGTRDTLYWINN---DIWRMPVEA---DRVPVRPFLEFR---------------------------DT----K  268 (328)
T ss_dssp             CCEEEEECTTSCEEEEESS---SEEEEETTC---SSCCSSCSBCCC---------------------------SS----C
T ss_pred             CceeEEEecCCCEEEEEcc---EEEEEECCC---CceeeeeeecCC---------------------------CC----c
Confidence            4789999999999999996   899999753   222110  1111                           12    3


Q ss_pred             CceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCCCCcceeeeec
Q 031020           82 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRY  156 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~gp~~~he~r~  156 (167)
                      |..++++|++++|||||.       ..|    ..++.+.++|.  + |++.  ..  +.-|..|.+-+++||.--
T Consensus       269 p~gi~vdp~~g~lyva~~-------~~y----~~~~~V~v~d~--~-g~~~--~~--i~~G~~P~~~~~~~~~~~  325 (328)
T 3dsm_A          269 YYGLTVNPNNGEVYVADA-------IDY----QQQGIVYRYSP--Q-GKLI--DE--FYVGIIPGAFCWKLEHHH  325 (328)
T ss_dssp             EEEEEECTTTCCEEEEEC-------TTS----SSEEEEEEECT--T-CCEE--EE--EEEEESEEEEEEECCCCC
T ss_pred             eEEEEEcCCCCeEEEEcc-------ccc----ccCCEEEEECC--C-CCEE--EE--EEeccCcceEEEeccccc
Confidence            999999999999999993       111    13567777877  3 6542  33  345888888888888643

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.32  E-value=6.8e-06  Score=65.73  Aligned_cols=62  Identities=27%  Similarity=0.432  Sum_probs=50.4

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .-+..+.+|+|+++||+++...+.|++||+..   .+....+..++                                .|
T Consensus        74 ~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~---~~~~~~~~~~~--------------------------------~~  118 (391)
T 1l0q_A           74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTS---NTVAGTVKTGK--------------------------------SP  118 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEEEECSS--------------------------------SE
T ss_pred             CCccceEECCCCCEEEEEECCCCEEEEEECCC---CeEEEEEeCCC--------------------------------Cc
Confidence            35688999999999999999899999999764   45555544332                                28


Q ss_pred             ceEEEccCCCEEEEEeC
Q 031020           83 QMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNs   99 (167)
                      ..+++|+||++||++++
T Consensus       119 ~~~~~s~dg~~l~~~~~  135 (391)
T 1l0q_A          119 LGLALSPDGKKLYVTNN  135 (391)
T ss_dssp             EEEEECTTSSEEEEEET
T ss_pred             ceEEECCCCCEEEEEeC
Confidence            89999999999999984

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.31  E-value=3e-06  Score=78.95  Aligned_cols=105  Identities=19%  Similarity=0.138  Sum_probs=71.6

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCC-------CCCeEEEEEEeC---ceeecCCceeEeeCCCCCCCCCCcccc
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDP-------KNPVLTGQIWVG---GLFRKGSPVVAVTDDGQPYQSDVPEVQ   74 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp-------~~pklvg~v~~G---G~~~~~~~v~v~~~~~~~~~p~~~~~~   74 (167)
                      +-.+++++|| ++|++|++.++|.+|++...       ...+.+.++.++   |...                       
T Consensus       333 P~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~-----------------------  388 (595)
T 1fwx_A          333 PLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLK-----------------------  388 (595)
T ss_dssp             EEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEE-----------------------
T ss_pred             cceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccce-----------------------
Confidence            4568999999 99999999999999999751       124678888886   3111                       


Q ss_pred             CccCCCCCceEEEccCCCEEEEEeCCCcccc-ccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCCC
Q 031020           75 GHRLRGGPQMIQLSLDGKRLYVTNSLFSAWD-CQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDG  147 (167)
Q Consensus        75 g~~~~g~P~~~~LS~DGkrLyVaNsl~s~wD-~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~g  147 (167)
                            +....++++|||+||++|.    +. ..|-|-.-.+=.+-..||+  .+|+|+|-.+..+  +.||..
T Consensus       389 ------~~~g~t~~~DGk~l~~~Nk----~skdr~~~~gp~~~~~~ql~di--s~~~m~lv~d~p~--~~ePh~  448 (595)
T 1fwx_A          389 ------TVMGETLDATNDWLVCLSK----FSKDRFLNVGPLKPENDQLIDI--SGDKMVLVHDGPT--FAEPHD  448 (595)
T ss_dssp             ------ETTTTSTTCCSSEEEEEES----CCTTSSCCCCSSCCEEEEEEEC--SSSSCEEEEEEEE--SSCCCC
T ss_pred             ------eccceEeCCCCCEEEEcCC----CCccccccCCCCCCCcceEEEc--CCCcEEEEEEEcC--CCCCCc
Confidence                  1344568999999999994    22 1221111111122244777  7889999999988  466654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.24  E-value=7.6e-06  Score=65.24  Aligned_cols=82  Identities=15%  Similarity=0.321  Sum_probs=56.6

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEE-EEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLT-GQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklv-g~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .+..|++|+|+++||+++...+.|++||++ +...++. .++..-  +.                         ...+.|
T Consensus       150 ~pngi~~spdg~~lyv~~~~~~~i~~~~~d-~~~G~~~~~~~~~~--~~-------------------------~~~~~p  201 (297)
T 3g4e_A          150 ISNGLDWSLDHKIFYYIDSLSYSVDAFDYD-LQTGQISNRRSVYK--LE-------------------------KEEQIP  201 (297)
T ss_dssp             BEEEEEECTTSCEEEEEEGGGTEEEEEEEC-TTTCCEEEEEEEEE--CC-------------------------GGGCEE
T ss_pred             cccceEEcCCCCEEEEecCCCCcEEEEecc-CCCCcccCcEEEEE--CC-------------------------CCCCCC
Confidence            356899999999999999999999999985 2333332 122210  00                         011349


Q ss_pred             ceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe
Q 031020           83 QMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM  131 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l  131 (167)
                      .-|+++++| +||||+.               .++.+.++|.  ++|.+
T Consensus       202 ~g~~~d~~G-~lwva~~---------------~~~~v~~~d~--~tG~~  232 (297)
T 3g4e_A          202 DGMCIDAEG-KLWVACY---------------NGGRVIRLDP--VTGKR  232 (297)
T ss_dssp             EEEEEBTTS-CEEEEEE---------------TTTEEEEECT--TTCCE
T ss_pred             CeeEECCCC-CEEEEEc---------------CCCEEEEEcC--CCceE
Confidence            999999999 6999983               4566776655  56665

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.23  E-value=2.9e-06  Score=77.05  Aligned_cols=108  Identities=17%  Similarity=0.198  Sum_probs=73.8

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEecc-------CCCC-----CeE---EEEE-EeCceeecCCceeEeeCCCCCCCC
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIE-------DPKN-----PVL---TGQI-WVGGLFRKGSPVVAVTDDGQPYQS   68 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIs-------dp~~-----pkl---vg~v-~~GG~~~~~~~v~v~~~~~~~~~p   68 (167)
                      +..|++++++++||++++.++.|.+||+.       ....     +..   ..++ .++.                    
T Consensus       249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~--------------------  308 (496)
T 3kya_A          249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIAD--------------------  308 (496)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSS--------------------
T ss_pred             ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCC--------------------
Confidence            35788999999999999999999999986       2111     110   1222 2211                    


Q ss_pred             CCccccCccCCCCCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEe-ccCC--C
Q 031020           69 DVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVD-FEAE--P  145 (167)
Q Consensus        69 ~~~~~~g~~~~g~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vD-f~~~--p  145 (167)
                                .++|.-++++++|++||||.+               .+..|.+++.|..++.+. ++.-++- ++..  .
T Consensus       309 ----------~~~p~~ia~~p~G~~lYvaD~---------------~~h~I~kid~dg~~~~~~-~~~~~aG~~g~~G~~  362 (496)
T 3kya_A          309 ----------PSWEFQIFIHPTGKYAYFGVI---------------NNHYFMRSDYDEIKKEFI-TPYNFVGGYKQSGYR  362 (496)
T ss_dssp             ----------SSCCEEEEECTTSSEEEEEET---------------TTTEEEEEEEETTTTEEC-CCEEEEEBTTBCCCB
T ss_pred             ----------CCCceEEEEcCCCCEEEEEeC---------------CCCEEEEEecCCCcceec-ccEEecCCCCCCccc
Confidence                      124999999999999999993               578999999998777542 1222222 1221  2


Q ss_pred             CCCcceeeeecCC
Q 031020          146 DGPALAHEMRYPG  158 (167)
Q Consensus       146 ~gp~~~he~r~pg  158 (167)
                      +||...-++.+|-
T Consensus       363 DG~~~~a~f~~P~  375 (496)
T 3kya_A          363 DDVGTEARMNNPC  375 (496)
T ss_dssp             CCBGGGCBCSSEE
T ss_pred             CCcccccccCCCe
Confidence            5777777788887

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.22  E-value=5.5e-06  Score=66.68  Aligned_cols=56  Identities=16%  Similarity=0.162  Sum_probs=40.4

Q ss_pred             ecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEEccC
Q 031020           11 SLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLD   90 (167)
Q Consensus        11 S~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS~D   90 (167)
                      |+|+++|||+++..+.|.+||++..........+..+                                ..|+.|++++|
T Consensus       175 s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~--------------------------------~~P~gi~vd~d  222 (306)
T 2p4o_A          175 KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ--------------------------------TNIDDFAFDVE  222 (306)
T ss_dssp             EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES--------------------------------CCCSSEEEBTT
T ss_pred             CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc--------------------------------CCCCCeEECCC
Confidence            9999999999999999999998742111111111111                                13999999999


Q ss_pred             CCEEEEEeC
Q 031020           91 GKRLYVTNS   99 (167)
Q Consensus        91 GkrLyVaNs   99 (167)
                      | +|||||.
T Consensus       223 G-~l~va~~  230 (306)
T 2p4o_A          223 G-NLYGATH  230 (306)
T ss_dssp             C-CEEEECB
T ss_pred             C-CEEEEeC
Confidence            9 5899993

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.17  E-value=6.6e-06  Score=71.49  Aligned_cols=81  Identities=19%  Similarity=0.300  Sum_probs=60.4

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      +.+|++++++..|||+.+..+.|++||..   ..++..++..-+.                             .++|..
T Consensus       230 P~giavd~~~G~lyv~d~~~~~V~~~d~~---~g~~~~~~~~~~~-----------------------------~~~~~~  277 (433)
T 4hw6_A          230 AKTCAVHPQNGKIYYTRYHHAMISSYDPA---TGTLTEEEVMMDT-----------------------------KGSNFH  277 (433)
T ss_dssp             BCCCEECTTTCCEEECBTTCSEEEEECTT---TCCEEEEEEECSC-----------------------------CSSCEE
T ss_pred             CCEEEEeCCCCeEEEEECCCCEEEEEECC---CCeEEEEEeccCC-----------------------------CCCccc
Confidence            56789999888999999999999999954   2444233322220                             112566


Q ss_pred             EEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCee
Q 031020           85 IQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA  132 (167)
Q Consensus        85 ~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~  132 (167)
                      +++++||++|||+++               .+..|.+++.|..+|.+.
T Consensus       278 ia~dpdG~~LYvad~---------------~~~~I~~~~~d~~~~~~~  310 (433)
T 4hw6_A          278 IVWHPTGDWAYIIYN---------------GKHCIYRVDYNRETGKLA  310 (433)
T ss_dssp             EEECTTSSEEEEEET---------------TTTEEEEEEBCTTTCCBC
T ss_pred             EEEeCCCCEEEEEeC---------------CCCEEEEEeCCCCCcccC
Confidence            999999999999993               577899999998777653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.16  E-value=1.9e-05  Score=63.94  Aligned_cols=62  Identities=27%  Similarity=0.373  Sum_probs=51.3

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      ..+..+.+|+|+++||+++...+.|.+||+..   .++...+..++                                .|
T Consensus       303 ~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~---~~~~~~~~~~~--------------------------------~~  347 (433)
T 3bws_A          303 GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE---KKVQKSIPVFD--------------------------------KP  347 (433)
T ss_dssp             ECEEEEEECSSTTEEEEEETTTTEEEEEETTT---TEEEEEEECSS--------------------------------SE
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEECCC---CcEEEEecCCC--------------------------------CC
Confidence            34678999999999999999999999999764   56665555333                                28


Q ss_pred             ceEEEccCCCEEEEEeC
Q 031020           83 QMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNs   99 (167)
                      ..+++|+||++||++++
T Consensus       348 ~~~~~s~dg~~l~~~~~  364 (433)
T 3bws_A          348 NTIALSPDGKYLYVSCR  364 (433)
T ss_dssp             EEEEECTTSSEEEEEEC
T ss_pred             CeEEEcCCCCEEEEEec
Confidence            89999999999999995

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.15  E-value=2.5e-05  Score=63.24  Aligned_cols=73  Identities=15%  Similarity=0.201  Sum_probs=57.0

Q ss_pred             CceeEEEEecCCCEEEEEeCCC--------------CcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLH--------------GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQS   68 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~h--------------g~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p   68 (167)
                      .-+..|.+|+|+++||+++...              |.|++||+..   .+++..+..++                    
T Consensus       345 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~---~~~~~~~~~~~--------------------  401 (433)
T 3bws_A          345 DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT---DTVKEFWEAGN--------------------  401 (433)
T ss_dssp             SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT---TEEEEEEECSS--------------------
T ss_pred             CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC---CcEEEEecCCC--------------------
Confidence            3467899999999999999874              5899999654   66666665432                    


Q ss_pred             CCccccCccCCCCCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEee
Q 031020           69 DVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN  125 (167)
Q Consensus        69 ~~~~~~g~~~~g~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD  125 (167)
                              .    |..+++|+||++||++++               ..+.+..++++
T Consensus       402 --------~----~~~~~~s~dg~~l~~~~~---------------~d~~i~v~~~~  431 (433)
T 3bws_A          402 --------Q----PTGLDVSPDNRYLVISDF---------------LDHQIRVYRRD  431 (433)
T ss_dssp             --------S----EEEEEECTTSCEEEEEET---------------TTTEEEEEEET
T ss_pred             --------C----CceEEEcCCCCEEEEEEC---------------CCCeEEEEEec
Confidence                    2    899999999999999983               34567667774

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.14  E-value=1.9e-05  Score=61.69  Aligned_cols=62  Identities=13%  Similarity=0.087  Sum_probs=47.2

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+..|++++++++||++++..+.|.+++.+. ...+..  +..+.                           .    .|+
T Consensus        80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~~~--~~~~~---------------------------~----~P~  125 (267)
T 1npe_A           80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDG-TQRRVL--FDTGL---------------------------V----NPR  125 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEE--ECSSC---------------------------S----SEE
T ss_pred             CccEEEEEecCCeEEEEECCCCEEEEEEcCC-CCEEEE--EECCC---------------------------C----Ccc
Confidence            4688999999999999999999999999753 111111  11110                           1    399


Q ss_pred             eEEEccCCCEEEEEeC
Q 031020           84 MIQLSLDGKRLYVTNS   99 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNs   99 (167)
                      .+++++++++|||++.
T Consensus       126 ~i~vd~~~g~lyv~~~  141 (267)
T 1npe_A          126 GIVTDPVRGNLYWTDW  141 (267)
T ss_dssp             EEEEETTTTEEEEEEC
T ss_pred             EEEEeeCCCEEEEEEC
Confidence            9999999999999994

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.07  E-value=2.1e-05  Score=60.99  Aligned_cols=73  Identities=15%  Similarity=0.225  Sum_probs=55.2

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      ..+..|++++|| .|||+++..+.|.+||..   +.++...+.+..                               ..|
T Consensus       226 ~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~---~g~~~~~~~~~~-------------------------------~~~  270 (314)
T 1pjx_A          226 GGADGMDFDEDN-NLLVANWGSSHIEVFGPD---GGQPKMRIRCPF-------------------------------EKP  270 (314)
T ss_dssp             CEEEEEEEBTTC-CEEEEEETTTEEEEECTT---CBSCSEEEECSS-------------------------------SCE
T ss_pred             CCCCceEECCCC-CEEEEEcCCCEEEEEcCC---CCcEeEEEeCCC-------------------------------CCc
Confidence            567889999998 589999999999999854   233444443322                               128


Q ss_pred             ceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEee
Q 031020           83 QMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN  125 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD  125 (167)
                      ..+++++||++|||+++               +++.+.+++++
T Consensus       271 ~~i~~~~dg~~l~v~~~---------------~~~~l~~~~~~  298 (314)
T 1pjx_A          271 SNLHFKPQTKTIFVTEH---------------ENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEECTTSSEEEEEET---------------TTTEEEEEECS
T ss_pred             eeEEECCCCCEEEEEeC---------------CCCeEEEEeCC
Confidence            99999999999999993               45678888885

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.05  E-value=4.9e-05  Score=61.37  Aligned_cols=101  Identities=12%  Similarity=0.108  Sum_probs=61.5

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCc--------------eeecCC----------ceeEee
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGG--------------LFRKGS----------PVVAVT   60 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG--------------~~~~~~----------~v~v~~   60 (167)
                      +..|++++|+..|||+++..+.|++||..+   .+++.++...+              .+...+          .|.+..
T Consensus       198 p~gia~d~~~g~l~v~d~~~~~I~~~~~~~---G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~  274 (329)
T 3fvz_A          198 PHSLALVPHLDQLCVADRENGRIQCFKTDT---KEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMN  274 (329)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTT---CCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEE
T ss_pred             CcEEEEECCCCEEEEEECCCCEEEEEECCC---CcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEE
Confidence            789999999889999999999999999762   44554442211              111111          122221


Q ss_pred             CCCCCCCCCCccccCccCCCCCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeC
Q 031020           61 DDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNS  126 (167)
Q Consensus        61 ~~~~~~~p~~~~~~g~~~~g~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~  126 (167)
                      -......  ...-.+...-..|..+++++|| .||||++               .+..|.+++++.
T Consensus       275 ~~~g~~~--~~~~~~~~~~~~p~~ia~~~dG-~lyvad~---------------~~~~I~~~~~~~  322 (329)
T 3fvz_A          275 FSSGEII--DVFKPVRKHFDMPHDIVASEDG-TVYIGDA---------------HTNTVWKFTLTE  322 (329)
T ss_dssp             TTTCCEE--EEECCSSSCCSSEEEEEECTTS-EEEEEES---------------SSCCEEEEEEEE
T ss_pred             cCCCeEE--EEEcCCCCccCCeeEEEECCCC-CEEEEEC---------------CCCEEEEEeCCc
Confidence            1110000  0000001122359999999999 9999994               466888898863

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.04  E-value=2.1e-05  Score=64.54  Aligned_cols=62  Identities=19%  Similarity=0.309  Sum_probs=46.2

Q ss_pred             ceeEEEEecCCCEEEEEeCCC-CcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWLH-GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~h-g~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .+.+|+++|++++||+++|+. +.|.+++.+- ...+.   +-..+                              -.+|
T Consensus       121 ~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~---~~~~~------------------------------~~~P  166 (316)
T 1ijq_A          121 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYS---LVTEN------------------------------IQWP  166 (316)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEE---EECSS------------------------------CSCE
T ss_pred             CcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEE---EEECC------------------------------CCCc
Confidence            467999999999999999986 8999998642 11111   11111                              0249


Q ss_pred             ceEEEccCCCEEEEEeC
Q 031020           83 QMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNs   99 (167)
                      +-+++++++++||+|++
T Consensus       167 ~gla~d~~~~~lY~~D~  183 (316)
T 1ijq_A          167 NGITLDLLSGRLYWVDS  183 (316)
T ss_dssp             EEEEEETTTTEEEEEET
T ss_pred             eEEEEeccCCEEEEEEC
Confidence            99999999999999996

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.00  E-value=1.2e-05  Score=64.66  Aligned_cols=81  Identities=15%  Similarity=0.173  Sum_probs=55.2

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeE--EEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVL--TGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pkl--vg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      .+.+|.+++||+ |||++|..+.|.+||-   . .++  +..+.++.                           .    .
T Consensus       213 ~P~gi~vd~dG~-l~va~~~~~~V~~~~~---~-G~~~~~~~~~~~~---------------------------~----~  256 (306)
T 2p4o_A          213 NIDDFAFDVEGN-LYGATHIYNSVVRIAP---D-RSTTIIAQAEQGV---------------------------I----G  256 (306)
T ss_dssp             CCSSEEEBTTCC-EEEECBTTCCEEEECT---T-CCEEEEECGGGTC---------------------------T----T
T ss_pred             CCCCeEECCCCC-EEEEeCCCCeEEEECC---C-CCEEEEeeccccc---------------------------C----C
Confidence            356899999995 7999999999999983   2 233  22222221                           1    3


Q ss_pred             CceEEEc---cCCCEEEEEeCCCccccccccccccccCcEEEEEEe
Q 031020           82 PQMIQLS---LDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDV  124 (167)
Q Consensus        82 P~~~~LS---~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dv  124 (167)
                      |..++++   +||++|||||+  .....+.. . ....+.++++++
T Consensus       257 p~~~a~~g~~~d~~~LyVt~~--~~~~~~~~-~-~~~~g~v~~i~~  298 (306)
T 2p4o_A          257 STAVAFGQTEGDCTAIYVVTN--GGMFLPPP-T-GVVPANVVRLEV  298 (306)
T ss_dssp             EEEEEECCSTTTTTEEEEEEC--TTSSSCCT-T-CCCCEEEEEEEC
T ss_pred             ceEEEEecccCCCCEEEEECC--CCcccCCC-c-ccccceEEEEec
Confidence            9999999   89999999997  23333331 1 123456888887

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.95  E-value=2.8e-05  Score=65.05  Aligned_cols=62  Identities=11%  Similarity=0.233  Sum_probs=46.8

Q ss_pred             ceeEEEEecCCCEEEEEeCCC-CcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWLH-GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~h-g~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .+.+|+++|++++||++.|+. +.|.+++.+.. ..+..  +. .+                              -.+|
T Consensus       160 ~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~--~~-~~------------------------------~~~P  205 (349)
T 3v64_C          160 KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRII--AD-TH------------------------------LFWP  205 (349)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEES--CC-SS------------------------------CSCE
T ss_pred             CcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEE--EE-CC------------------------------CCCc
Confidence            468999999999999999998 99999986531 11111  00 11                              1249


Q ss_pred             ceEEEccCCCEEEEEeC
Q 031020           83 QMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNs   99 (167)
                      +-+++++++++||||++
T Consensus       206 nGla~d~~~~~lY~aD~  222 (349)
T 3v64_C          206 NGLTIDYAGRRMYWVDA  222 (349)
T ss_dssp             EEEEEETTTTEEEEEET
T ss_pred             ceEEEeCCCCEEEEEEC
Confidence            99999999999999995

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.93  E-value=3.8e-05  Score=65.11  Aligned_cols=62  Identities=11%  Similarity=0.230  Sum_probs=47.0

Q ss_pred             ceeEEEEecCCCEEEEEeCCC-CcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWLH-GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~h-g~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .+.+|+++|++++||++.|.. +.|.+++.+.. ..+.+   -..+                              -.+|
T Consensus       203 ~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~---~~~~------------------------------~~~P  248 (386)
T 3v65_B          203 KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRII---ADTH------------------------------LFWP  248 (386)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEE---ECSS------------------------------CSCE
T ss_pred             CCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-CcEEE---EECC------------------------------CCCe
Confidence            468999999999999999998 99999986531 11111   1111                              1139


Q ss_pred             ceEEEccCCCEEEEEeC
Q 031020           83 QMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNs   99 (167)
                      +-+++++++++||||++
T Consensus       249 nGlavd~~~~~lY~aD~  265 (386)
T 3v65_B          249 NGLTIDYAGRRMYWVDA  265 (386)
T ss_dssp             EEEEEEGGGTEEEEEET
T ss_pred             eeEEEeCCCCEEEEEEC
Confidence            99999999999999995

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.88  E-value=5.1e-05  Score=60.91  Aligned_cols=62  Identities=26%  Similarity=0.479  Sum_probs=45.6

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+..|++|+|+++|||++...+.|++|++......+.  ++..                              .+.| |.
T Consensus       186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~--~~~~------------------------------~~~g-P~  232 (322)
T 2fp8_A          186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTA--EVLV------------------------------KIPN-PG  232 (322)
T ss_dssp             CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCE--EEEE------------------------------ECSS-EE
T ss_pred             cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCcc--ceEE------------------------------eCCC-CC
Confidence            3568999999999999999999999999875321110  0100                              1234 99


Q ss_pred             eEEEccCCCEEEEEeC
Q 031020           84 MIQLSLDGKRLYVTNS   99 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNs   99 (167)
                      .++++++|+ ||||+.
T Consensus       233 gi~~d~~G~-l~va~~  247 (322)
T 2fp8_A          233 NIKRNADGH-FWVSSS  247 (322)
T ss_dssp             EEEECTTSC-EEEEEE
T ss_pred             CeEECCCCC-EEEEec
Confidence            999999996 999983

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.86  E-value=7.4e-05  Score=62.26  Aligned_cols=54  Identities=17%  Similarity=0.135  Sum_probs=45.2

Q ss_pred             EEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEE
Q 031020            8 FLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQL   87 (167)
Q Consensus         8 I~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~L   87 (167)
                      .-|+.+++.||+.+|..+.+.+||   +.+.+++++++.++                            +    +  ..|
T Consensus        68 eGi~~~~~~ly~ltw~~~~v~v~D---~~tl~~~~ti~~~~----------------------------~----G--wgl  110 (243)
T 3mbr_X           68 AGIVAWRDRLIQLTWRNHEGFVYD---LATLTPRARFRYPG----------------------------E----G--WAL  110 (243)
T ss_dssp             EEEEEETTEEEEEESSSSEEEEEE---TTTTEEEEEEECSS----------------------------C----C--CEE
T ss_pred             eEEEEeCCEEEEEEeeCCEEEEEE---CCcCcEEEEEeCCC----------------------------C----c--eEE
Confidence            445567899999999999999999   45699999999865                            1    2  567


Q ss_pred             ccCCCEEEEEe
Q 031020           88 SLDGKRLYVTN   98 (167)
Q Consensus        88 S~DGkrLyVaN   98 (167)
                      +.||++||++|
T Consensus       111 t~dg~~L~vSd  121 (243)
T 3mbr_X          111 TSDDSHLYMSD  121 (243)
T ss_dssp             EECSSCEEEEC
T ss_pred             eeCCCEEEEEC
Confidence            78999999999

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.85  E-value=5.6e-05  Score=61.72  Aligned_cols=79  Identities=15%  Similarity=0.209  Sum_probs=49.4

Q ss_pred             ceeEEEEecCCCEEEEEeC---CCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCcc---
Q 031020            4 LITDFLISLDDRFLYFSNW---LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHR---   77 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw---~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~---   77 (167)
                      .+.+|++++++.++||++.   ..+.|.+||...   .++...+  .+...            ....|-...+.|+.   
T Consensus       121 ~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~---g~~~r~~--~~~~~------------~~~~~~~~~~~g~~~~~  183 (343)
T 2qe8_A          121 FVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT---GLAARVL--QGYPG------------IAPEDIDLVIDGVPVQI  183 (343)
T ss_dssp             CCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT---CCEEEEC--TTCTT------------TSCCSCCCEETTEECBE
T ss_pred             ccceEEEecCCCEEEEEcCccCCCCeEEEEECCC---CCEEEEe--cCCCc------------ccccccceeECCEEEEe
Confidence            4589999999999999999   889999999753   2332211  11000            00000001111211   


Q ss_pred             ---------CCCCCceEEEccCCCEEEEEeC
Q 031020           78 ---------LRGGPQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        78 ---------~~g~P~~~~LS~DGkrLyVaNs   99 (167)
                               +..+|+-+++|+||++||++++
T Consensus       184 ~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~  214 (343)
T 2qe8_A          184 GQPDGTVIRPHLGVNGIVLDAENEWLYLSPM  214 (343)
T ss_dssp             ECTTSCEECCCCCEEEEEECTTSCEEEEEES
T ss_pred             ccCCCceeceecccceeEeccCCCEEEEEeC
Confidence                     2245899999999999999984

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=97.85  E-value=0.00023  Score=56.62  Aligned_cols=31  Identities=23%  Similarity=0.270  Sum_probs=26.8

Q ss_pred             ceeEEEEecCCCEEEEEeCCC-----CcEEEEeccC
Q 031020            4 LITDFLISLDDRFLYFSNWLH-----GDIRQYNIED   34 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~h-----g~I~qyDIsd   34 (167)
                      .+..|++|+|++.||+++..+     +.|++|++..
T Consensus       189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~  224 (305)
T 3dr2_A          189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD  224 (305)
T ss_dssp             SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET
T ss_pred             CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC
Confidence            356799999999999999874     7999999874

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.85  E-value=0.00015  Score=57.17  Aligned_cols=82  Identities=21%  Similarity=0.216  Sum_probs=56.7

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+..|.+++||+ ||++++..+.|.+||.+    .+....+.+++..                       .|.  ...|.
T Consensus       234 ~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~----g~~~~~~~~~~~~-----------------------~g~--~~~~~  283 (333)
T 2dg1_A          234 GPDSCCIDSDDN-LYVAMYGQGRVLVFNKR----GYPIGQILIPGRD-----------------------EGH--MLRST  283 (333)
T ss_dssp             EEEEEEEBTTCC-EEEEEETTTEEEEECTT----SCEEEEEECTTGG-----------------------GTC--SCBCC
T ss_pred             CCCceEECCCCC-EEEEEcCCCEEEEECCC----CCEEEEEEcCCCc-----------------------ccc--ccCcc
Confidence            567899999996 89999998999999852    3455555443210                       000  01389


Q ss_pred             eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEee
Q 031020           84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN  125 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD  125 (167)
                      .+++++||++|||+++--.          ...++.+++++++
T Consensus       284 ~~~~~~dg~~L~v~~~~g~----------~~~~~~l~~~~~~  315 (333)
T 2dg1_A          284 HPQFIPGTNQLIICSNDIE----------MGGGSMLYTVNGF  315 (333)
T ss_dssp             EEEECTTSCEEEEEEECGG----------GTCCEEEEEEECS
T ss_pred             eEEECCCCCEEEEEeCccC----------CCCCceEEEEecc
Confidence            9999999999999985110          0236788888875

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.84  E-value=8.4e-05  Score=63.49  Aligned_cols=61  Identities=20%  Similarity=0.321  Sum_probs=45.8

Q ss_pred             eeEEEEecCCCEEEEEeCCC-CcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            5 ITDFLISLDDRFLYFSNWLH-GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~h-g~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      +.+|++.|.+++||++.|+. +.|.+++.+.. ..+..   -.++ +                             .+|+
T Consensus       204 P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~-~~~~~---~~~~-l-----------------------------~~P~  249 (400)
T 3p5b_L          204 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSL---VTEN-I-----------------------------QWPN  249 (400)
T ss_dssp             EEEEEEETTTTEEEEEECSSSCCEEEEETTSC-SCEEE---ECSS-C-----------------------------SCEE
T ss_pred             cceEEEecccCeEEEEeCCCCCEEEEEeCCCC-ccEEE---EECC-C-----------------------------CceE
Confidence            67999999999999999984 88998886531 11111   1111 0                             1399


Q ss_pred             eEEEccCCCEEEEEeC
Q 031020           84 MIQLSLDGKRLYVTNS   99 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNs   99 (167)
                      -+++++++++||||++
T Consensus       250 glavd~~~~~lY~aD~  265 (400)
T 3p5b_L          250 GITLDLLSGRLYWVDS  265 (400)
T ss_dssp             EEEEETTTTEEEEEET
T ss_pred             EEEEEeCCCEEEEEEC
Confidence            9999999999999995

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.83  E-value=5.5e-05  Score=64.28  Aligned_cols=53  Identities=17%  Similarity=0.197  Sum_probs=44.8

Q ss_pred             EEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEEc
Q 031020            9 LISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLS   88 (167)
Q Consensus         9 ~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS   88 (167)
                      -|+++++.||+++|..+.+.+||   +++.+++++++.++                                  +-..|+
T Consensus       100 Git~~g~~Ly~ltw~~~~v~V~D---~~Tl~~~~ti~~~~----------------------------------eGwGLt  142 (268)
T 3nok_A          100 GLASDGERLYQLTWTEGLLFTWS---GMPPQRERTTRYSG----------------------------------EGWGLC  142 (268)
T ss_dssp             EEEECSSCEEEEESSSCEEEEEE---TTTTEEEEEEECSS----------------------------------CCCCEE
T ss_pred             EEEEeCCEEEEEEccCCEEEEEE---CCcCcEEEEEeCCC----------------------------------ceeEEe
Confidence            35668899999999999999999   45699999998754                                  235677


Q ss_pred             cCCCEEEEEe
Q 031020           89 LDGKRLYVTN   98 (167)
Q Consensus        89 ~DGkrLyVaN   98 (167)
                      .||++||++|
T Consensus       143 ~Dg~~L~vSd  152 (268)
T 3nok_A          143 YWNGKLVRSD  152 (268)
T ss_dssp             EETTEEEEEC
T ss_pred             cCCCEEEEEC
Confidence            9999999999

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=97.80  E-value=0.00017  Score=58.63  Aligned_cols=33  Identities=24%  Similarity=0.525  Sum_probs=26.0

Q ss_pred             CceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCC
Q 031020           82 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKG  129 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G  129 (167)
                      |+.+++|+||++||++++               ....+.++|+++++|
T Consensus       181 ~~~i~~s~dg~~lyv~~~---------------~~~~I~~~d~~~~~G  213 (326)
T 2ghs_A          181 PNSICFSPDGTTGYFVDT---------------KVNRLMRVPLDARTG  213 (326)
T ss_dssp             EEEEEECTTSCEEEEEET---------------TTCEEEEEEBCTTTC
T ss_pred             cCCeEEcCCCCEEEEEEC---------------CCCEEEEEEcccccC
Confidence            889999999999999984               345677777764455

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=97.80  E-value=0.00015  Score=58.43  Aligned_cols=86  Identities=13%  Similarity=0.101  Sum_probs=56.6

Q ss_pred             ceeEEEEecCCCEEEEEeC-CCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            4 LITDFLISLDDRFLYFSNW-LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw-~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .+.+|++++++..|||++. ..+.|++||.+    .++...+...|.   +            ..+.+.     + -..|
T Consensus       144 ~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~----g~~~~~~~~~g~---~------------~~~~~~-----~-~~~p  198 (329)
T 3fvz_A          144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS----GKFVTQWGEESS---G------------SSPRPG-----Q-FSVP  198 (329)
T ss_dssp             SEEEEEECTTTCCEEEEECSSCCEEEEECTT----SCEEEEECEECC---S------------SSCCTT-----E-ESCE
T ss_pred             CCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC----CCEEEEeccCCC---C------------CCCCCc-----c-cCCC
Confidence            4789999998888999995 89999999932    344444432221   0            000000     0 1139


Q ss_pred             ceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe
Q 031020           83 QMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM  131 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l  131 (167)
                      ..+++++|+.+||||++               .+..+.++|.+  +|.+
T Consensus       199 ~gia~d~~~g~l~v~d~---------------~~~~I~~~~~~--~G~~  230 (329)
T 3fvz_A          199 HSLALVPHLDQLCVADR---------------ENGRIQCFKTD--TKEF  230 (329)
T ss_dssp             EEEEEETTTTEEEEEET---------------TTTEEEEEETT--TCCE
T ss_pred             cEEEEECCCCEEEEEEC---------------CCCEEEEEECC--CCcE
Confidence            99999999999999994               35566667663  4443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.78  E-value=9.4e-05  Score=61.60  Aligned_cols=62  Identities=15%  Similarity=0.347  Sum_probs=45.9

Q ss_pred             ceeEEEEecCCCEEEEEeCC-CCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWL-HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~-hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .+.+|++.+.+++||++.|+ .+.|.+++.+-. ..+.   +-..+ +                             ..|
T Consensus       123 ~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~---~~~~~-l-----------------------------~~P  168 (318)
T 3sov_A          123 QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFI---IINSE-I-----------------------------YWP  168 (318)
T ss_dssp             SEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-SCEE---EECSS-C-----------------------------SCE
T ss_pred             CccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-CeEE---EEECC-C-----------------------------CCc
Confidence            36789999999999999997 688998886521 1111   11111 0                             139


Q ss_pred             ceEEEccCCCEEEEEeC
Q 031020           83 QMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNs   99 (167)
                      +-+++++++++||+|++
T Consensus       169 nglavd~~~~~lY~aD~  185 (318)
T 3sov_A          169 NGLTLDYEEQKLYWADA  185 (318)
T ss_dssp             EEEEEETTTTEEEEEET
T ss_pred             cEEEEeccCCEEEEEEC
Confidence            99999999999999995

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.76  E-value=0.00015  Score=61.18  Aligned_cols=63  Identities=24%  Similarity=0.386  Sum_probs=48.0

Q ss_pred             CCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEEccCCC
Q 031020           13 DDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGK   92 (167)
Q Consensus        13 DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS~DGk   92 (167)
                      || .||+++|..++|.+.|   |++.+.++.|.+.|.....         + .     ....+    ..|+-++++++++
T Consensus       181 ~G-~lyan~w~~~~I~vID---p~tG~V~~~Id~~~L~~~~---------~-~-----~~~~~----~vlNGIA~dp~~~  237 (262)
T 3nol_A          181 DG-EIFANVWQTNKIVRID---PETGKVTGIIDLNGILAEA---------G-P-----LPSPI----DVLNGIAWDKEHH  237 (262)
T ss_dssp             TT-EEEEEETTSSEEEEEC---TTTCBEEEEEECTTGGGGS---------C-S-----CCSSC----CCEEEEEEETTTT
T ss_pred             CC-EEEEEEccCCeEEEEE---CCCCcEEEEEECCcCcccc---------c-c-----ccCcC----CceEEEEEcCCCC
Confidence            55 6999999999999877   7889999999998843110         0 0     00111    2399999999999


Q ss_pred             EEEEEe
Q 031020           93 RLYVTN   98 (167)
Q Consensus        93 rLyVaN   98 (167)
                      |||||.
T Consensus       238 ~lfVTG  243 (262)
T 3nol_A          238 RLFVTG  243 (262)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            999999

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.76  E-value=8.9e-05  Score=61.78  Aligned_cols=64  Identities=19%  Similarity=0.277  Sum_probs=48.0

Q ss_pred             CCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEEccCCCE
Q 031020           14 DRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKR   93 (167)
Q Consensus        14 dRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS~DGkr   93 (167)
                      +..||+++|..++|++.|   |++.+.+++|.++|.....           . +  .....+.    -|+-++++++++|
T Consensus       159 ~G~lyanvw~s~~I~vID---p~tG~V~~~idl~~l~~~~-----------~-~--~~~~~~~----vlNGIA~d~~~~~  217 (243)
T 3mbr_X          159 NGELLANVWLTSRIARID---PASGKVVAWIDLQALVPDA-----------D-A--LTDSTND----VLNGIAFDAEHDR  217 (243)
T ss_dssp             TTEEEEEETTTTEEEEEC---TTTCBEEEEEECGGGSTTT-----------T-S--CCCTTSS----CEEEEEEETTTTE
T ss_pred             CCEEEEEECCCCeEEEEE---CCCCCEEEEEECCcCcccc-----------c-c--ccCCcCC----ceEEEEEcCCCCE
Confidence            456999999999999777   7889999999999843110           0 0  0011122    3899999999999


Q ss_pred             EEEEe
Q 031020           94 LYVTN   98 (167)
Q Consensus        94 LyVaN   98 (167)
                      ||||.
T Consensus       218 lfVTG  222 (243)
T 3mbr_X          218 LFVTG  222 (243)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99999

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.74  E-value=7.8e-05  Score=62.97  Aligned_cols=54  Identities=17%  Similarity=0.033  Sum_probs=44.8

Q ss_pred             EEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEE
Q 031020            8 FLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQL   87 (167)
Q Consensus         8 I~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~L   87 (167)
                      .-|+++++.||+++|..+.+.+||   +++.+++++++.++                                  +-..|
T Consensus        90 eGit~~g~~ly~ltw~~~~v~v~D---~~t~~~~~ti~~~~----------------------------------eG~gl  132 (262)
T 3nol_A           90 EGISDWKDKIVGLTWKNGLGFVWN---IRNLRQVRSFNYDG----------------------------------EGWGL  132 (262)
T ss_dssp             EEEEEETTEEEEEESSSSEEEEEE---TTTCCEEEEEECSS----------------------------------CCCCE
T ss_pred             eEEEEeCCEEEEEEeeCCEEEEEE---CccCcEEEEEECCC----------------------------------CceEE
Confidence            345667899999999999999999   45589999999865                                  22467


Q ss_pred             ccCCCEEEEEe
Q 031020           88 SLDGKRLYVTN   98 (167)
Q Consensus        88 S~DGkrLyVaN   98 (167)
                      +.||++||++|
T Consensus       133 t~dg~~L~~Sd  143 (262)
T 3nol_A          133 THNDQYLIMSD  143 (262)
T ss_dssp             EECSSCEEECC
T ss_pred             ecCCCEEEEEC
Confidence            78999999999

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.74  E-value=0.00027  Score=55.23  Aligned_cols=72  Identities=14%  Similarity=0.252  Sum_probs=53.0

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      +.+..|.+++||+ |||++  .+.|.+||.+    .++..++.+..                               + |
T Consensus       218 ~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~----g~~~~~~~~~~-------------------------------~-~  258 (296)
T 3e5z_A          218 GKTDGLRVDAGGL-IWASA--GDGVHVLTPD----GDELGRVLTPQ-------------------------------T-T  258 (296)
T ss_dssp             SCCCSEEEBTTSC-EEEEE--TTEEEEECTT----SCEEEEEECSS-------------------------------C-C
T ss_pred             CCCCeEEECCCCC-EEEEc--CCeEEEECCC----CCEEEEEECCC-------------------------------C-c
Confidence            4566899999997 89999  7889999843    45665655433                               1 8


Q ss_pred             ceEEE-ccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCee
Q 031020           83 QMIQL-SLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA  132 (167)
Q Consensus        83 ~~~~L-S~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~  132 (167)
                      ..+++ ++||++|||+++                 ..+++++.  ++.+|+
T Consensus       259 ~~~~f~~~d~~~L~v~t~-----------------~~l~~~~~--~~~~~~  290 (296)
T 3e5z_A          259 SNLCFGGPEGRTLYMTVS-----------------TEFWSIET--NVRGLE  290 (296)
T ss_dssp             CEEEEESTTSCEEEEEET-----------------TEEEEEEC--SCCBCC
T ss_pred             eeEEEECCCCCEEEEEcC-----------------CeEEEEEc--cccccc
Confidence            88888 699999999993                 25666665  666654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.72  E-value=0.00018  Score=62.30  Aligned_cols=87  Identities=18%  Similarity=0.172  Sum_probs=56.3

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+-.|++|||+|+|||+....+.|++|++...........+.+                                .|.|.
T Consensus       222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~--------------------------------~g~PD  269 (355)
T 3sre_A          222 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF--------------------------------DTLVD  269 (355)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC--------------------------------SSEEE
T ss_pred             ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC--------------------------------CCCCc
Confidence            4678999999999999999999999999985322221212222                                23499


Q ss_pred             eEEEcc-CCCEEEEEeCCCccccccccccccccCcEEEEEEe
Q 031020           84 MIQLSL-DGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDV  124 (167)
Q Consensus        84 ~~~LS~-DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dv  124 (167)
                      .++++. +|+ ||||...-...=-.+-|+. ..++.+++|..
T Consensus       270 Gi~vD~e~G~-lwva~~~~g~~v~~~~P~~-~~~s~v~rI~~  309 (355)
T 3sre_A          270 NISVDPVTGD-LWVGCHPNGMRIFFYDAEN-PPGSEVLRIQD  309 (355)
T ss_dssp             EEEECTTTCC-EEEEEESCHHHHHSCCTTS-CCCEEEEEEEC
T ss_pred             eEEEeCCCCc-EEEEecCCceEEEEECCCC-CCCCEEEEEEc
Confidence            999999 586 7776521100001122332 34888888875

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.68  E-value=0.00011  Score=62.47  Aligned_cols=64  Identities=19%  Similarity=0.282  Sum_probs=48.0

Q ss_pred             CCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEEccCCC
Q 031020           13 DDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGK   92 (167)
Q Consensus        13 DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS~DGk   92 (167)
                      || .||+++|..++|.+.|   |++.+.+++|.++|.....+           .+   .    .....-|+-++++++++
T Consensus       190 dG-~lyanvw~s~~I~vID---p~TG~V~~~Idl~~L~~~~~-----------~~---~----~~~~~vlNGIA~dp~~~  247 (268)
T 3nok_A          190 NG-VIYANIWHSSDVLEID---PATGTVVGVIDASALTRAVA-----------GQ---V----TNPEAVLNGIAVEPGSG  247 (268)
T ss_dssp             TT-EEEEEETTCSEEEEEC---TTTCBEEEEEECHHHHHHHT-----------TT---C----CCTTCCEEEEEECTTTC
T ss_pred             CC-EEEEEECCCCeEEEEe---CCCCcEEEEEECCCCccccc-----------cc---c----cCcCCceEEEEEcCCCC
Confidence            66 6999999999999877   78899999999998431100           00   0    00112389999999999


Q ss_pred             EEEEEe
Q 031020           93 RLYVTN   98 (167)
Q Consensus        93 rLyVaN   98 (167)
                      |||||.
T Consensus       248 rlfVTG  253 (268)
T 3nok_A          248 RIFMTG  253 (268)
T ss_dssp             CEEEEE
T ss_pred             EEEEeC
Confidence            999999

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.67  E-value=0.00048  Score=57.73  Aligned_cols=63  Identities=14%  Similarity=0.168  Sum_probs=44.3

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -+.+|++++||| |||+.+. |.|.+++  + ...+.+..+++                         ...|   .++|.
T Consensus        32 ~P~~ia~~pdG~-l~V~e~~-g~I~~i~--~-g~~~~~~~~~v-------------------------~~~g---~~~p~   78 (352)
T 2ism_A           32 VPWALAFLPDGG-MLIAERP-GRIRLFR--E-GRLSTYAELSV-------------------------YHRG---ESGLL   78 (352)
T ss_dssp             CEEEEEECTTSC-EEEEETT-TEEEEEE--T-TEEEEEEECCC-------------------------CCST---TCSEE
T ss_pred             CceEEEEcCCCe-EEEEeCC-CeEEEEE--C-CCccEeecceE-------------------------eecC---CCCce
Confidence            367899999998 9999986 8999888  3 22222222211                         0011   23599


Q ss_pred             eEEEccC---CCEEEEEeC
Q 031020           84 MIQLSLD---GKRLYVTNS   99 (167)
Q Consensus        84 ~~~LS~D---GkrLyVaNs   99 (167)
                      .+++++|   +++|||+++
T Consensus        79 gia~~pdf~~~g~lYv~~~   97 (352)
T 2ism_A           79 GLALHPRFPQEPYVYAYRT   97 (352)
T ss_dssp             EEEECTTTTTSCEEEEEEE
T ss_pred             eEEECCCCCCCCEEEEEEe
Confidence            9999999   999999995

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.64  E-value=0.00024  Score=61.61  Aligned_cols=48  Identities=17%  Similarity=0.230  Sum_probs=35.1

Q ss_pred             CceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCCC
Q 031020           82 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDG  147 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~g  147 (167)
                      |+-+++||||++||||++               ....+.+++++ .+|.++.-..|  ++...|+|
T Consensus       223 pNGia~spDg~~lYvadt---------------~~~~I~~~~~~-~~g~l~~~~~~--~~~g~PDG  270 (355)
T 3sre_A          223 ANGINISPDGKYVYIAEL---------------LAHKIHVYEKH-ANWTLTPLRVL--SFDTLVDN  270 (355)
T ss_dssp             EEEEEECTTSSEEEEEEG---------------GGTEEEEEEEC-TTSCEEEEEEE--ECSSEEEE
T ss_pred             cCcceECCCCCEEEEEeC---------------CCCeEEEEEEC-CCCcEecCEEE--eCCCCCce
Confidence            999999999999999995               35678889987 46766543333  55444444

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.63  E-value=0.00014  Score=55.29  Aligned_cols=71  Identities=10%  Similarity=0.144  Sum_probs=51.5

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+..|.+++|| .|||+++..+.|.+|+....   +.. .+..++                              ...|.
T Consensus       193 ~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~---~~~-~~~~~~------------------------------~~~p~  237 (270)
T 1rwi_B          193 APWGIAVDEAG-TVYVTEHNTNQVVKLLAGST---TST-VLPFTG------------------------------LNTPL  237 (270)
T ss_dssp             SEEEEEECTTC-CEEEEETTTSCEEEECTTCS---CCE-ECCCCS------------------------------CSCEE
T ss_pred             CceEEEECCCC-CEEEEECCCCcEEEEcCCCC---cce-eeccCC------------------------------CCCce
Confidence            46889999999 89999999999999996531   111 111111                              01399


Q ss_pred             eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEee
Q 031020           84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN  125 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD  125 (167)
                      .+++++||+ |||+++               .+..|..++.+
T Consensus       238 ~i~~~~~g~-l~v~~~---------------~~~~v~~~~~~  263 (270)
T 1rwi_B          238 AVAVDSDRT-VYVADR---------------GNDRVVKLTSL  263 (270)
T ss_dssp             EEEECTTCC-EEEEEG---------------GGTEEEEECCC
T ss_pred             eEEECCCCC-EEEEEC---------------CCCEEEEEcCC
Confidence            999999996 999994               45677777774

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=97.62  E-value=0.00025  Score=57.63  Aligned_cols=61  Identities=18%  Similarity=0.334  Sum_probs=47.8

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      +.+..|.++.||+ |||++|..+.|.+||.+    .++..++.+..                           ..    |
T Consensus       230 ~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~----g~~~~~i~~~~---------------------------~~----~  273 (326)
T 2ghs_A          230 GGMDGSVCDAEGH-IWNARWGEGAVDRYDTD----GNHIARYEVPG---------------------------KQ----T  273 (326)
T ss_dssp             SEEEEEEECTTSC-EEEEEETTTEEEEECTT----CCEEEEEECSC---------------------------SB----E
T ss_pred             CCCCeeEECCCCC-EEEEEeCCCEEEEECCC----CCEEEEEECCC---------------------------CC----c
Confidence            4567899999995 99999999999999852    45555665433                           12    8


Q ss_pred             ceEEEc-cCCCEEEEEeC
Q 031020           83 QMIQLS-LDGKRLYVTNS   99 (167)
Q Consensus        83 ~~~~LS-~DGkrLyVaNs   99 (167)
                      ..++++ +|+++|||+++
T Consensus       274 ~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          274 TCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEEEEESTTSCEEEEEEB
T ss_pred             EEEEEecCCCCEEEEEec
Confidence            899998 99999999985

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.61  E-value=0.00042  Score=56.67  Aligned_cols=100  Identities=12%  Similarity=0.131  Sum_probs=64.7

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+..|+++++++.||++.+..+.|.+||.+. .+.+.+..  .++                             .-+.|.
T Consensus       165 ~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~--~~~-----------------------------~~~~P~  212 (316)
T 1ijq_A          165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILE--DEK-----------------------------RLAHPF  212 (316)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEE--CTT-----------------------------TTSSEE
T ss_pred             CceEEEEeccCCEEEEEECCCCeEEEEecCC-CceEEEee--cCC-----------------------------ccCCcE
Confidence            4678999999999999999999999999763 22332211  111                             011287


Q ss_pred             eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCCCCcceeeeecC
Q 031020           84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYP  157 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~gp~~~he~r~p  157 (167)
                      -+++  |+.+||||+.               .+..+.++|.  .+|+..  ..+...+ ..|.|-...|+.|-|
T Consensus       213 giav--~~~~ly~~d~---------------~~~~V~~~~~--~~g~~~--~~i~~~~-~~p~~i~v~~~~~qp  264 (316)
T 1ijq_A          213 SLAV--FEDKVFWTDI---------------INEAIFSANR--LTGSDV--NLLAENL-LSPEDMVLFHNLTQP  264 (316)
T ss_dssp             EEEE--ETTEEEEEET---------------TTTEEEEEET--TTCCCC--EEEECSC-SCCCCEEEESGGGSC
T ss_pred             EEEE--ECCEEEEEEC---------------CCCeEEEEeC--CCCcce--EEEecCC-CCceEEEEeccccCC
Confidence            7777  5789999993               4667877775  556431  1111122 347775566776666

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=97.60  E-value=0.00044  Score=57.53  Aligned_cols=89  Identities=13%  Similarity=0.039  Sum_probs=58.0

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccC--CCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIED--PKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd--p~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      .++.|.+++|+++||+++..++.|.+|++++  ....+.+.++...+                                .
T Consensus       309 ~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~--------------------------------~  356 (450)
T 2vdu_B          309 AVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPY--------------------------------N  356 (450)
T ss_dssp             CEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSS--------------------------------C
T ss_pred             EEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCC--------------------------------c
Confidence            4789999999999999999899999999933  23345566665433                                2


Q ss_pred             CceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeec
Q 031020           82 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAIN  134 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~  134 (167)
                      +..+++++++  ++++..      .+.-|.  .....|-.+.++.++|.++++
T Consensus       357 v~~~~~~~~~--~~v~~~------~~~~~~--~~~~~i~v~~~~~~~~~~~~~  399 (450)
T 2vdu_B          357 VISLSAHNDE--FQVTLD------NKESSG--VQKNFAKFIEYNLNENSFVVN  399 (450)
T ss_dssp             EEEEEEETTE--EEEEEC------CTTCCS--SCCCSEEEEEEETTTTEEEEC
T ss_pred             eEEEEecCCc--EEEEEe------cccCCC--CCCcceEEEEEEcCCCeEEEc
Confidence            8899999954  444431      021111  012234445666678887554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.57  E-value=0.00029  Score=54.50  Aligned_cols=30  Identities=10%  Similarity=0.093  Sum_probs=26.8

Q ss_pred             ceeEEEEe----cCCCEEEEEeCCCCcEEEEecc
Q 031020            4 LITDFLIS----LDDRFLYFSNWLHGDIRQYNIE   33 (167)
Q Consensus         4 l~tdI~IS----~DdRfLYVSnw~hg~I~qyDIs   33 (167)
                      .+..|+++    +|+++||+++...+.|.+||+.
T Consensus       173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~  206 (314)
T 1pjx_A          173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIK  206 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEE
T ss_pred             CcceEEEecccCCCCCEEEEEECCCCeEEEEECC
Confidence            35788999    9999999999989999999976

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.57  E-value=0.00034  Score=59.21  Aligned_cols=99  Identities=17%  Similarity=0.126  Sum_probs=66.5

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+..|+++++++.||++.+..+.|.+||++. .+.+.+   ...+                              .+.|.
T Consensus       247 ~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~---~~~~------------------------------~~~P~  292 (386)
T 3v65_B          247 WPNGLTIDYAGRRMYWVDAKHHVIERANLDG-SHRKAV---ISQG------------------------------LPHPF  292 (386)
T ss_dssp             CEEEEEEEGGGTEEEEEETTTTEEEEECTTS-CSCEEE---ECSS------------------------------CSSEE
T ss_pred             CeeeEEEeCCCCEEEEEECCCCEEEEEeCCC-CeeEEE---EECC------------------------------CCCce
Confidence            3678999999999999999999999999763 222211   1111                              01288


Q ss_pred             eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCCCCcceeeeecCC
Q 031020           84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPG  158 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~gp~~~he~r~pg  158 (167)
                      -+++  ++.+||||+.               .+..|.++|.  .+|+..  ..+... ...|.|-...|..|-|-
T Consensus       293 giav--~~~~ly~td~---------------~~~~V~~~~~--~~G~~~--~~i~~~-~~~p~gi~v~~~~~q~~  345 (386)
T 3v65_B          293 AITV--FEDSLYWTDW---------------HTKSINSANK--FTGKNQ--EIIRNK-LHFPMDIHTLHPQRQPA  345 (386)
T ss_dssp             EEEE--ETTEEEEEET---------------TTTEEEEEET--TTCCSC--EEEECS-CSCCCCEEEESGGGSCC
T ss_pred             EEEE--ECCEEEEeeC---------------CCCeEEEEEC--CCCcce--EEEccC-CCCCceEEEEchhcCcC
Confidence            8888  6779999993               4667877774  455431  111112 24688877888888764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.55  E-value=0.00062  Score=56.82  Aligned_cols=98  Identities=19%  Similarity=0.186  Sum_probs=66.5

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+..|+++++++.||++.+..+.|.+||.+. .+.+.+   ...+                              .+.|.
T Consensus       204 ~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG-~~~~~~---~~~~------------------------------~~~P~  249 (349)
T 3v64_C          204 WPNGLTIDYAGRRMYWVDAKHHVIERANLDG-SHRKAV---ISQG------------------------------LPHPF  249 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEE---ECSS------------------------------CSSEE
T ss_pred             CcceEEEeCCCCEEEEEECCCCEEEEEeCCC-CceEEE---EeCC------------------------------CCCce
Confidence            3678999999999999999999999999763 222211   1111                              01288


Q ss_pred             eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe--eecCceeEeccCCCCCCcceeeeecCCC
Q 031020           84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM--AINPNFFVDFEAEPDGPALAHEMRYPGG  159 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l--~l~~~F~vDf~~~p~gp~~~he~r~pgg  159 (167)
                      -+++  ++.+||||+.               .+..+.++|.  .+|+.  ++..    . ...|.|-..-|..|-|-|
T Consensus       250 giav--~~~~ly~td~---------------~~~~V~~~~~--~~G~~~~~i~~----~-~~~p~gi~v~~~~~qp~~  303 (349)
T 3v64_C          250 AITV--FEDSLYWTDW---------------HTKSINSANK--FTGKNQEIIRN----K-LHFPMDIHTLHPQRQPAG  303 (349)
T ss_dssp             EEEE--ETTEEEEEET---------------TTTEEEEEET--TTCCSCEEEEC----S-CSCCCCEEEECGGGSCCC
T ss_pred             EEEE--ECCEEEEecC---------------CCCeEEEEEc--cCCCccEEecc----C-CCCCceEEEEccccCccc
Confidence            8888  6789999993               4667777764  45543  2221    2 245888777788877643

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.54  E-value=0.00023  Score=54.03  Aligned_cols=60  Identities=13%  Similarity=0.221  Sum_probs=42.2

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+.+|.+++|++ |||+++..+.|.+|+..   ..+..-. ...+                              ...|+
T Consensus       109 ~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~---~~~~~~~-~~~~------------------------------~~~p~  153 (270)
T 1rwi_B          109 YPEGLAVDTQGA-VYVADRGNNRVVKLAAG---SKTQTVL-PFTG------------------------------LNDPD  153 (270)
T ss_dssp             SEEEEEECTTCC-EEEEEGGGTEEEEECTT---CCSCEEC-CCCS------------------------------CCSCC
T ss_pred             CCcceEECCCCC-EEEEECCCCEEEEEECC---CceeEee-cccc------------------------------CCCce
Confidence            468999999997 99999999999999632   2221100 0011                              01399


Q ss_pred             eEEEccCCCEEEEEeC
Q 031020           84 MIQLSLDGKRLYVTNS   99 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNs   99 (167)
                      .++++++|+ |||+++
T Consensus       154 ~i~~~~~g~-l~v~~~  168 (270)
T 1rwi_B          154 GVAVDNSGN-VYVTDT  168 (270)
T ss_dssp             CEEECTTCC-EEEEEG
T ss_pred             eEEEeCCCC-EEEEEC
Confidence            999999997 999984

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.54  E-value=0.00046  Score=58.86  Aligned_cols=86  Identities=16%  Similarity=0.257  Sum_probs=54.3

Q ss_pred             EEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEE
Q 031020            7 DFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQ   86 (167)
Q Consensus         7 dI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~   86 (167)
                      +|++++++.+|||++...+.|++|+.+.    ++  .+..|..-..+             ..+.+. ...+ -..|+.++
T Consensus       271 ~ia~~p~~g~lyv~d~~~~~I~~~~~~g----~~--~~~~g~~~~~g-------------~~dg~~-~~~~-~~~P~gia  329 (409)
T 3hrp_A          271 YLIYYFVDSNFYMSDQNLSSVYKITPDG----EC--EWFCGSATQKT-------------VQDGLR-EEAL-FAQPNGMT  329 (409)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTC----CE--EEEEECTTCCS-------------CBCEEG-GGCB-CSSEEEEE
T ss_pred             cEEEeCCCCEEEEEeCCCCEEEEEecCC----CE--EEEEeCCCCCC-------------cCCCcc-cccE-eCCCeEEE
Confidence            8999999999999999999999998653    11  11222100000             000000 0000 12499999


Q ss_pred             EccCCCEEEEEeCCCccccccccccccc-cCcEEEEEEeeCCCCCe
Q 031020           87 LSLDGKRLYVTNSLFSAWDCQFYPELKE-KGSHMLQIDVNSEKGGM  131 (167)
Q Consensus        87 LS~DGkrLyVaNsl~s~wD~Qfyp~~~~-~g~~~~~~dvD~~~G~l  131 (167)
                      +++||+ ||||+               . .+..|.++|.  .+|.+
T Consensus       330 ~d~dG~-lyvad---------------~~~~~~I~~~~~--~~G~v  357 (409)
T 3hrp_A          330 VDEDGN-FYIVD---------------GFKGYCLRKLDI--LDGYV  357 (409)
T ss_dssp             ECTTCC-EEEEE---------------TTTTCEEEEEET--TTTEE
T ss_pred             EeCCCC-EEEEe---------------CCCCCEEEEEEC--CCCEE
Confidence            999998 99999               3 4667777775  45655

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.53  E-value=0.00078  Score=52.97  Aligned_cols=18  Identities=44%  Similarity=0.514  Sum_probs=16.6

Q ss_pred             CceEEEccCCCEEEEEeC
Q 031020           82 PQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaNs   99 (167)
                      |+.+++|+||++|||+++
T Consensus       184 ~~~i~~~~dg~~l~v~~~  201 (333)
T 2dg1_A          184 ANGIALSTDEKVLWVTET  201 (333)
T ss_dssp             EEEEEECTTSSEEEEEEG
T ss_pred             ccceEECCCCCEEEEEeC
Confidence            889999999999999984

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=97.51  E-value=0.00088  Score=55.71  Aligned_cols=66  Identities=9%  Similarity=0.120  Sum_probs=47.9

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+..+.+|+|+++|++++-..+.|++||+.. ...+....+..-+                             ....+.
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~-----------------------------~~~~v~  153 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDK-TSKNVLKLRKRFC-----------------------------FSKRPN  153 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECS-SSSSCEEEEEEEE-----------------------------CSSCEE
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcC-CCCceeeeeeccc-----------------------------CCCCce
Confidence            5889999999999988887889999999972 1122333332101                             112378


Q ss_pred             eEEEccCCCEEEEEeC
Q 031020           84 MIQLSLDGKRLYVTNS   99 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNs   99 (167)
                      .+++||||++|++++.
T Consensus       154 ~~~~sp~~~~l~~~~~  169 (450)
T 2vdu_B          154 AISIAEDDTTVIIADK  169 (450)
T ss_dssp             EEEECTTSSEEEEEET
T ss_pred             EEEEcCCCCEEEEEeC
Confidence            8999999999999974

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.50  E-value=0.00059  Score=52.68  Aligned_cols=61  Identities=3%  Similarity=0.018  Sum_probs=44.6

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+.+|++++|++ |||++...+.|.+||.+    .++...+...+.                             ...|+
T Consensus       122 ~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~----g~~~~~~~~~~~-----------------------------~~~p~  167 (286)
T 1q7f_A          122 HPRGVTVDNKGR-IIVVECKVMRVIIFDQN----GNVLHKFGCSKH-----------------------------LEFPN  167 (286)
T ss_dssp             CEEEEEECTTSC-EEEEETTTTEEEEECTT----SCEEEEEECTTT-----------------------------CSSEE
T ss_pred             CceEEEEeCCCC-EEEEECCCCEEEEEcCC----CCEEEEeCCCCc-----------------------------cCCcE
Confidence            468899999997 99999999999999843    233333322110                             01399


Q ss_pred             eEEEccCCCEEEEEeC
Q 031020           84 MIQLSLDGKRLYVTNS   99 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNs   99 (167)
                      .+++++||+ |||+++
T Consensus       168 ~i~~~~~g~-l~v~~~  182 (286)
T 1q7f_A          168 GVVVNDKQE-IFISDN  182 (286)
T ss_dssp             EEEECSSSE-EEEEEG
T ss_pred             EEEECCCCC-EEEEEC
Confidence            999999987 999984

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.50  E-value=0.0008  Score=53.89  Aligned_cols=18  Identities=22%  Similarity=0.237  Sum_probs=17.0

Q ss_pred             CceEEEccCCCEEEEEeC
Q 031020           82 PQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaNs   99 (167)
                      |+.+++++||++|||+++
T Consensus       187 p~gia~~~dg~~lyv~d~  204 (322)
T 2fp8_A          187 PGGAEVSADSSFVLVAEF  204 (322)
T ss_dssp             CCEEEECTTSSEEEEEEG
T ss_pred             CcceEECCCCCEEEEEeC
Confidence            999999999999999984

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.49  E-value=0.00038  Score=59.38  Aligned_cols=83  Identities=11%  Similarity=0.015  Sum_probs=53.6

Q ss_pred             eeEEEEecCCCEEEEEeC-CCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            5 ITDFLISLDDRFLYFSNW-LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw-~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      +.+|++++||+ |||+++ ..+.|++|++.+   .++.-..-.++..  + .      .+  ..+..  .    --..|+
T Consensus       325 P~gia~d~dG~-lyvad~~~~~~I~~~~~~~---G~v~~~~g~~~~~--g-~------~~--g~~~~--~----~~~~P~  383 (409)
T 3hrp_A          325 PNGMTVDEDGN-FYIVDGFKGYCLRKLDILD---GYVSTVAGQVDVA--S-Q------ID--GTPLE--A----TFNYPY  383 (409)
T ss_dssp             EEEEEECTTCC-EEEEETTTTCEEEEEETTT---TEEEEEEECTTCB--S-C------CC--BSTTT--C----CBSSEE
T ss_pred             CeEEEEeCCCC-EEEEeCCCCCEEEEEECCC---CEEEEEeCCCCCC--C-c------CC--CChhc--e----EeCCce
Confidence            78999999998 999999 999999999654   3332111111100  0 0      00  00000  0    012499


Q ss_pred             eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEe
Q 031020           84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDV  124 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dv  124 (167)
                      .+++++| .+||||++               .+..|.++++
T Consensus       384 giavd~~-g~lyVad~---------------~n~~Ir~i~~  408 (409)
T 3hrp_A          384 DICYDGE-GGYWIAEA---------------WGKAIRKYAV  408 (409)
T ss_dssp             EEEECSS-SEEEEEES---------------TTCEEEEEEE
T ss_pred             EEEEcCC-CCEEEEEC---------------CCCeEEEEEe
Confidence            9999999 68999993               5778887776

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=97.49  E-value=0.00055  Score=50.88  Aligned_cols=62  Identities=16%  Similarity=0.158  Sum_probs=43.8

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      ..+..+.+|||+++|+++.  .+.|.+||+..+..++.   +..+.                             -...+
T Consensus        42 ~~v~~~~~spdg~~l~~~~--~~~i~~~d~~~~~~~~~---~~~~~-----------------------------~~~~~   87 (297)
T 2ojh_A           42 ELFEAPNWSPDGKYLLLNS--EGLLYRLSLAGDPSPEK---VDTGF-----------------------------ATICN   87 (297)
T ss_dssp             SCCEEEEECTTSSEEEEEE--TTEEEEEESSSCCSCEE---CCCTT-----------------------------CCCBC
T ss_pred             cceEeeEECCCCCEEEEEc--CCeEEEEeCCCCCCceE---ecccc-----------------------------ccccc
Confidence            4578899999999999886  67999999875232221   11111                             01126


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      ..+++||||++|+++.
T Consensus        88 ~~~~~spdg~~l~~~~  103 (297)
T 2ojh_A           88 NDHGISPDGALYAISD  103 (297)
T ss_dssp             SCCEECTTSSEEEEEE
T ss_pred             cceEECCCCCEEEEEE
Confidence            7799999999999987

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=97.48  E-value=0.001  Score=51.29  Aligned_cols=60  Identities=8%  Similarity=0.036  Sum_probs=45.1

Q ss_pred             ceeEEEEecCCCEEEEEeCCCC-cEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWLHG-DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg-~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .+..|++++|| .|||+++..+ .|.+||.+    .+....+..+..                             ...|
T Consensus       208 ~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~----g~~~~~~~~~~~-----------------------------~~~~  253 (286)
T 1q7f_A          208 YPIGVGINSNG-EILIADNHNNFNLTIFTQD----GQLISALESKVK-----------------------------HAQC  253 (286)
T ss_dssp             SEEEEEECTTC-CEEEEECSSSCEEEEECTT----SCEEEEEEESSC-----------------------------CSCE
T ss_pred             CCcEEEECCCC-CEEEEeCCCCEEEEEECCC----CCEEEEEcccCC-----------------------------CCcc
Confidence            57899999999 5899999886 99999843    345555544331                             0128


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      ..+++++||+ ||||+
T Consensus       254 ~~i~~~~~g~-l~vs~  268 (286)
T 1q7f_A          254 FDVALMDDGS-VVLAS  268 (286)
T ss_dssp             EEEEEETTTE-EEEEE
T ss_pred             eeEEECCCCc-EEEEC
Confidence            8999999995 99997

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.47  E-value=6.5e-05  Score=69.25  Aligned_cols=61  Identities=20%  Similarity=0.293  Sum_probs=44.7

Q ss_pred             eeEEEEecCCCEEEEEeCCC-CcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            5 ITDFLISLDDRFLYFSNWLH-GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~h-g~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      +.+|++++++++||++.|+. +.|.+++++... .+.+   ...+                              -.+|+
T Consensus       498 P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l---~~~~------------------------------l~~Pn  543 (699)
T 1n7d_A          498 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSL---VTEN------------------------------IQWPN  543 (699)
T ss_dssp             CCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEE---SCSS------------------------------CSSCC
T ss_pred             cceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEE---EeCC------------------------------CCCcc
Confidence            56899999999999999986 889888765311 1111   0011                              12499


Q ss_pred             eEEEccCCCEEEEEeC
Q 031020           84 MIQLSLDGKRLYVTNS   99 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNs   99 (167)
                      -+++++++++||||++
T Consensus       544 Glavd~~~~~LY~aD~  559 (699)
T 1n7d_A          544 GITLDLLSGRLYWVDS  559 (699)
T ss_dssp             CEEECTTTCCEEEEET
T ss_pred             EEEEeccCCEEEEEec
Confidence            9999999999999995

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.47  E-value=0.001  Score=55.28  Aligned_cols=100  Identities=17%  Similarity=0.202  Sum_probs=67.1

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+..|+++++++.||++.+..+.|.++|.+. .+.+.+.   .++ +                         .+    |.
T Consensus       167 ~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~---~~~-~-------------------------~~----P~  212 (318)
T 3sov_A          167 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-TNRQAVV---KGS-L-------------------------PH----PF  212 (318)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEE---CSC-C-------------------------SC----EE
T ss_pred             CccEEEEeccCCEEEEEECCCCEEEEEcCCC-CceEEEe---cCC-C-------------------------CC----ce
Confidence            3678999999999999999999999999763 2333221   111 0                         12    77


Q ss_pred             eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCCCCcceeeeecCCC
Q 031020           84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGG  159 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~gp~~~he~r~pgg  159 (167)
                      -+++  |+.+||+|+.               .+..+.++|.  .+|+..  ....... ..|.|-..-|+.|-|.+
T Consensus       213 glav--~~~~lywtd~---------------~~~~V~~~~~--~~G~~~--~~i~~~~-~~P~~i~v~~~~~q~~~  266 (318)
T 3sov_A          213 ALTL--FEDILYWTDW---------------STHSILACNK--YTGEGL--REIHSDI-FSPMDIHAFSQQRQPNA  266 (318)
T ss_dssp             EEEE--ETTEEEEEET---------------TTTEEEEEET--TTCCSC--EEEECCC-SSCCCEEEECGGGSCCC
T ss_pred             EEEE--eCCEEEEEec---------------CCCeEEEEEC--CCCCce--EEEeCCC-CCCcEEEEecccccccc
Confidence            7776  6789999993               4668888876  556531  1111111 45888677788887743

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.44  E-value=0.00055  Score=53.44  Aligned_cols=61  Identities=10%  Similarity=0.113  Sum_probs=44.7

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeE-E-EEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVL-T-GQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pkl-v-g~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      .+..|++|+|++.| +++...+.|.+|++...  .++ . .++. ..                             ..+.
T Consensus       173 ~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~--g~~~~~~~~~-~~-----------------------------~~~~  219 (296)
T 3e5z_A          173 KPNGLAFLPSGNLL-VSDTGDNATHRYCLNAR--GETEYQGVHF-TV-----------------------------EPGK  219 (296)
T ss_dssp             SEEEEEECTTSCEE-EEETTTTEEEEEEECSS--SCEEEEEEEE-CC-----------------------------SSSC
T ss_pred             CCccEEECCCCCEE-EEeCCCCeEEEEEECCC--CcCcCCCeEe-eC-----------------------------CCCC
Confidence            46789999999999 99999999999998732  233 1 1122 11                             1234


Q ss_pred             CceEEEccCCCEEEEEe
Q 031020           82 PQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaN   98 (167)
                      |..+++++||+ |||++
T Consensus       220 p~~i~~d~~G~-l~v~~  235 (296)
T 3e5z_A          220 TDGLRVDAGGL-IWASA  235 (296)
T ss_dssp             CCSEEEBTTSC-EEEEE
T ss_pred             CCeEEECCCCC-EEEEc
Confidence            99999999996 88887

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.43  E-value=0.00046  Score=57.82  Aligned_cols=91  Identities=16%  Similarity=0.146  Sum_probs=54.1

Q ss_pred             ceeEEEEecC---CCEEEEEeCCC-----CcEEEEeccCCCCCeEEE--EEEeCceeecCCceeEeeCCCCCCCCCCccc
Q 031020            4 LITDFLISLD---DRFLYFSNWLH-----GDIRQYNIEDPKNPVLTG--QIWVGGLFRKGSPVVAVTDDGQPYQSDVPEV   73 (167)
Q Consensus         4 l~tdI~IS~D---dRfLYVSnw~h-----g~I~qyDIsdp~~pklvg--~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~   73 (167)
                      .+.+|++++|   +++|||++...     +.|.+|+.++.   ++..  .+.. + +                 |... -
T Consensus        76 ~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~---~~~~~~~l~~-~-~-----------------p~~~-~  132 (352)
T 2ism_A           76 GLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGE---RGVLDRVVLD-G-I-----------------PARP-H  132 (352)
T ss_dssp             SEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSS---CEEEEEEEEE-E-E-----------------CCCT-T
T ss_pred             CceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCC---CcCceEEEEE-e-C-----------------CCCC-C
Confidence            4689999999   99999999864     78999997742   2211  1111 0 0                 0000 0


Q ss_pred             cCccCCCCCceEEEccCCCEEEEEeCCCcc-ccccccccccccCcEEEEEEee
Q 031020           74 QGHRLRGGPQMIQLSLDGKRLYVTNSLFSA-WDCQFYPELKEKGSHMLQIDVN  125 (167)
Q Consensus        74 ~g~~~~g~P~~~~LS~DGkrLyVaNsl~s~-wD~Qfyp~~~~~g~~~~~~dvD  125 (167)
                      ...    .|..+++++|| +||||+.-... -..|.   .-+..+.|+++|.|
T Consensus       133 ~~h----~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d---~~~~~g~I~ri~~d  177 (352)
T 2ism_A          133 GLH----SGGRIAFGPDG-MLYVTTGEVYERELAQD---LASLGGKILRLTPE  177 (352)
T ss_dssp             CCC----CCCCEEECTTS-CEEEECCCTTCGGGGGC---TTCSSSEEEEECTT
T ss_pred             CCc----CCceEEECCCC-CEEEEECCCCCCccccC---CCCCceEEEEEcCC
Confidence            011    38899999999 79999842111 00111   11234688888876

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=97.43  E-value=0.0016  Score=53.42  Aligned_cols=59  Identities=17%  Similarity=0.096  Sum_probs=44.2

Q ss_pred             eeEEEEecCCCEEEEEe-CCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            5 ITDFLISLDDRFLYFSN-WLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSn-w~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      +-.+++||||++|.++. -..+.|+.||+.+   .+...++...+                            .    -.
T Consensus       136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~---~~~~~~~~~~~----------------------------~----V~  180 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVPAIMRIIDPSD---LTEKFEIETRG----------------------------E----VK  180 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSSCEEEEEETTT---TEEEEEEECSS----------------------------C----CC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCEEEEeECCC---CcEEEEeCCCC----------------------------c----eE
Confidence            44689999999998754 3568899999764   55655554333                            2    67


Q ss_pred             eEEEccCCCEEEEEe
Q 031020           84 MIQLSLDGKRLYVTN   98 (167)
Q Consensus        84 ~~~LS~DGkrLyVaN   98 (167)
                      .+++||||++|..+.
T Consensus       181 ~v~fspdg~~l~s~s  195 (365)
T 4h5i_A          181 DLHFSTDGKVVAYIT  195 (365)
T ss_dssp             EEEECTTSSEEEEEC
T ss_pred             EEEEccCCceEEecc
Confidence            899999999998775

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.42  E-value=0.0014  Score=50.09  Aligned_cols=65  Identities=22%  Similarity=0.235  Sum_probs=47.8

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      ..++.+.+|+|+++|+++.  .|.|++||+......+....+...+                             ..+..
T Consensus        52 ~~v~~~~~~~~~~~l~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~-----------------------------~~~~v  100 (337)
T 1gxr_A           52 EVVCAVTISNPTRHVYTGG--KGCVKVWDISHPGNKSPVSQLDCLN-----------------------------RDNYI  100 (337)
T ss_dssp             SCCCEEEECSSSSEEEEEC--BSEEEEEETTSTTCCSCSEEEECSC-----------------------------TTSBE
T ss_pred             CceEEEEEecCCcEEEEcC--CCeEEEEECCCCCceeeeecccccC-----------------------------CCCcE
Confidence            4578899999999999887  8999999998654443333333211                             11236


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      ..+++++||++|+++.
T Consensus       101 ~~~~~~~~~~~l~~~~  116 (337)
T 1gxr_A          101 RSCKLLPDGCTLIVGG  116 (337)
T ss_dssp             EEEEECTTSSEEEEEE
T ss_pred             EEEEEcCCCCEEEEEc
Confidence            7889999999999886

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.41  E-value=0.0005  Score=65.06  Aligned_cols=61  Identities=20%  Similarity=0.356  Sum_probs=45.8

Q ss_pred             eeEEEEecCCCEEEEEeCCC-CcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            5 ITDFLISLDDRFLYFSNWLH-GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~h-g~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      +.+|+|.+..++||++.|+. +.|.+++.+-. ..+   .+..++ +                             .+|+
T Consensus       516 P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~-~~~---~lv~~~-l-----------------------------~~P~  561 (791)
T 3m0c_C          516 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIY---SLVTEN-I-----------------------------QWPN  561 (791)
T ss_dssp             EEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEE---EEECSS-C-----------------------------SCEE
T ss_pred             cceEEEecCCCCEEEecCCCCCeEEEEecCCC-ceE---EEEeCC-C-----------------------------CCce
Confidence            67999999999999999987 88998886531 111   111111 0                             1499


Q ss_pred             eEEEccCCCEEEEEeC
Q 031020           84 MIQLSLDGKRLYVTNS   99 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNs   99 (167)
                      -++|++++++||||++
T Consensus       562 GLavD~~~~~LYwaD~  577 (791)
T 3m0c_C          562 GITLDLLSGRLYWVDS  577 (791)
T ss_dssp             EEEEETTTTEEEEEET
T ss_pred             EEEEecCCCeEEEEeC
Confidence            9999999999999985

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.40  E-value=0.001  Score=62.99  Aligned_cols=99  Identities=12%  Similarity=0.115  Sum_probs=69.0

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+..|+|+++++.||++.+..+.|.++++.. ...+.+  +..++.                               .|+
T Consensus       559 ~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG-~~~~~v--~~~~~~-------------------------------l~~  604 (791)
T 3m0c_C          559 WPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTI--LEDEKR-------------------------------LAH  604 (791)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEE--EECTTT-------------------------------TSS
T ss_pred             CceEEEEecCCCeEEEEeCCCCcEEEEecCC-CceEEE--ecCCCc-------------------------------cCC
Confidence            4789999999999999999999999999853 222222  122221                               156


Q ss_pred             eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe--eecCceeEeccCCCCCCcceeeeecCC
Q 031020           84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM--AINPNFFVDFEAEPDGPALAHEMRYPG  158 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l--~l~~~F~vDf~~~p~gp~~~he~r~pg  158 (167)
                      -+.|+.++.+||||++               ++..|.++|.  .+|.-  ++..     -...|.|=.+.|..|.|-
T Consensus       605 P~glav~~~~lYwtD~---------------~~~~I~~~dk--~tG~~~~~l~~-----~l~~P~~i~v~h~~~Qp~  659 (791)
T 3m0c_C          605 PFSLAVFEDKVFWTDI---------------INEAIFSANR--LTGSDVNLLAE-----NLLSPEDMVLFHNLTQPR  659 (791)
T ss_dssp             EEEEEEETTEEEEEET---------------TTTEEEEEET--TTCCCCEEEEC-----SCSCCCCEEEESGGGSCC
T ss_pred             CCEEEEeCCEEEEEEC---------------CCCEEEEEeC--CCCcceEEeec-----CCCCceeEeeeccccCCC
Confidence            6677778999999993               4678887876  55532  3322     234688877889888874

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.40  E-value=0.0007  Score=61.93  Aligned_cols=60  Identities=13%  Similarity=0.277  Sum_probs=45.3

Q ss_pred             eeEEEEecCCCEEEEEeCC-CCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            5 ITDFLISLDDRFLYFSNWL-HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~-hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      +.+|++.|...+||++.|+ .+.|.+++.+- ...+.+.   .+.                           .    +|+
T Consensus       125 P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG-~~~~~l~---~~~---------------------------~----~P~  169 (628)
T 4a0p_A          125 PRALALDPAEGFMYWTEWGGKPKIDRAAMDG-SERTTLV---PNV---------------------------G----RAN  169 (628)
T ss_dssp             EEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEEEE---CSC---------------------------S----SEE
T ss_pred             cccEEEccCCCeEEEeCCCCCCEEEEEeCCC-CceEEEE---CCC---------------------------C----Ccc
Confidence            6799999999999999998 67888888653 2222221   111                           1    399


Q ss_pred             eEEEccCCCEEEEEeC
Q 031020           84 MIQLSLDGKRLYVTNS   99 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNs   99 (167)
                      -+++++++++||||++
T Consensus       170 GlalD~~~~~LY~aD~  185 (628)
T 4a0p_A          170 GLTIDYAKRRLYWTDL  185 (628)
T ss_dssp             EEEEETTTTEEEEEET
T ss_pred             eEEEccccCEEEEEEC
Confidence            9999999999999995

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.39  E-value=0.0011  Score=58.36  Aligned_cols=74  Identities=14%  Similarity=0.294  Sum_probs=58.5

Q ss_pred             EEEE--ecC-CC-EEEEEeCCCCcEEEEeccCCC----CCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccC
Q 031020            7 DFLI--SLD-DR-FLYFSNWLHGDIRQYNIEDPK----NPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRL   78 (167)
Q Consensus         7 dI~I--S~D-dR-fLYVSnw~hg~I~qyDIsdp~----~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~   78 (167)
                      .|.+  |++ ++ |+||++-. |.+.||++.+..    ..+++.++.+|+                            . 
T Consensus       132 Glcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~f~lgs----------------------------q-  181 (355)
T 3amr_A          132 GFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRAFKMNS----------------------------Q-  181 (355)
T ss_dssp             CEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEEEECSS----------------------------C-
T ss_pred             EEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEEecCCC----------------------------C-
Confidence            3777  775 54 79999875 999999998753    446788888876                            2 


Q ss_pred             CCCCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCC
Q 031020           79 RGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKG  129 (167)
Q Consensus        79 ~g~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G  129 (167)
                         |+.++..+...+|||+.+               + ..|.++|.+++++
T Consensus       182 ---~EgcvvDd~~g~Lyv~eE---------------d-~GIw~~da~p~~~  213 (355)
T 3amr_A          182 ---TEGMAADDEYGRLYIAEE---------------D-EAIWKFSAEPDGG  213 (355)
T ss_dssp             ---EEEEEEETTTTEEEEEET---------------T-TEEEEEECSTTSC
T ss_pred             ---cceEEEcCCCCeEEEecc---------------c-ceEEEEeCCcCCC
Confidence               999999999999999983               3 4488999987763

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=97.39  E-value=0.0017  Score=51.59  Aligned_cols=34  Identities=21%  Similarity=0.229  Sum_probs=24.2

Q ss_pred             CceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEee
Q 031020           82 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN  125 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD  125 (167)
                      |+-+++|+||++|||+++.-     ..     .....+.++|++
T Consensus       190 p~gl~~spdg~~lyv~~~~~-----~~-----~~~~~i~~~~~~  223 (305)
T 3dr2_A          190 PNGLAFSPDEQTLYVSQTPE-----QG-----HGSVEITAFAWR  223 (305)
T ss_dssp             EEEEEECTTSSEEEEEECCC-------------CCCEEEEEEEE
T ss_pred             CcceEEcCCCCEEEEEecCC-----cC-----CCCCEEEEEEec
Confidence            89999999999999999510     00     013567777876

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.39  E-value=0.00025  Score=65.37  Aligned_cols=100  Identities=12%  Similarity=0.098  Sum_probs=63.6

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+..|+|++++++||++.+..+.|.+|+... .+.+.+.  ...+.                             .+.|.
T Consensus       541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG-~~~~~~~--~~~~~-----------------------------~~~P~  588 (699)
T 1n7d_A          541 WPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTIL--EDEKR-----------------------------LAHPF  588 (699)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEECSSS-SCCEEEC--CCSSS-----------------------------CSSCC
T ss_pred             CccEEEEeccCCEEEEEecCCCeEEEEccCC-CceEEEE--ecCCc-----------------------------CCCce
Confidence            3568999999999999999999999999753 2222211  11110                             01266


Q ss_pred             eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCCCCcceeeeecC
Q 031020           84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYP  157 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~gp~~~he~r~p  157 (167)
                      -|++  |+.+||||+.               .+..|.++|.  .+|+..  ..+.+. ...|.|-.+.|+.|-|
T Consensus       589 glav--d~~~lywtd~---------------~~~~V~~~d~--~~G~~~--~~i~~~-~~~P~~i~v~~~~~qp  640 (699)
T 1n7d_A          589 SLAV--FEDKVFWTDI---------------INEAIFSANR--LTGSDV--NLLAEN-LLSPEDMVLFHQLTQP  640 (699)
T ss_dssp             CCEE--ETTEEEEECS---------------TTTCEEEEET--TTEEEE--ECCCTT-CSSCCCCCBCSSSSSC
T ss_pred             EeEE--ECCEEEEEeC---------------CCCeEEEEEc--cCCCce--EEeecC-CCCCcEEEEeCcccCC
Confidence            6665  6779999993               4567777775  566531  111111 2347777778887766

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.39  E-value=0.0019  Score=52.62  Aligned_cols=67  Identities=7%  Similarity=0.076  Sum_probs=48.8

Q ss_pred             ceeEEEEecCCCEEEEEeCC-----CCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccC
Q 031020            4 LITDFLISLDDRFLYFSNWL-----HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRL   78 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~-----hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~   78 (167)
                      .+..|.+++|+| |||+..+     .+.|.+||..   +.+++.++.+....                     ...    
T Consensus        68 ~p~gv~~d~~g~-L~v~D~g~~~~~~~~i~~~d~~---tg~~~~~~~~~~~~---------------------~~~----  118 (343)
T 2qe8_A           68 TVLGIKSDGNGI-VWMLDNGNQSKSVPKLVAWDTL---NNQLSRVIYLPPPI---------------------TLS----  118 (343)
T ss_dssp             CEEEEEECSSSE-EEEEECHHHHTSCCEEEEEETT---TTEEEEEEECCTTT---------------------SCT----
T ss_pred             EeeEEEEcCCCc-EEEEcCCCCcCCCCeEEEEECC---CCeEEEEEECChhh---------------------ccc----
Confidence            467899999986 9998876     5789999954   46666666553310                     001    


Q ss_pred             CCCCceEEEccCCCEEEEEeC
Q 031020           79 RGGPQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        79 ~g~P~~~~LS~DGkrLyVaNs   99 (167)
                      ...|+.+++++++.++|||++
T Consensus       119 ~~~~~~v~vd~~~g~~yvtd~  139 (343)
T 2qe8_A          119 NSFVNDLAVDLIHNFVYISDP  139 (343)
T ss_dssp             TCCCCEEEEETTTTEEEEEEC
T ss_pred             ccccceEEEecCCCEEEEEcC
Confidence            123899999999999999994

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=97.36  E-value=0.00048  Score=57.27  Aligned_cols=66  Identities=11%  Similarity=-0.001  Sum_probs=49.1

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCC-----------CeEEEEEEeCceeecCCceeEeeCCCCCCCCCCc
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKN-----------PVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVP   71 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~-----------pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~   71 (167)
                      .-++.|.+||+++++++|+..++.|++||+.....           +++.....  |                       
T Consensus       322 ~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~-----------------------  376 (430)
T 2xyi_A          322 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG--G-----------------------  376 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECC--C-----------------------
T ss_pred             CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcC--C-----------------------
Confidence            45789999999999999999999999999986322           12221111  1                       


Q ss_pred             cccCccCCCCCceEEEccCCCEEEEEeC
Q 031020           72 EVQGHRLRGGPQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        72 ~~~g~~~~g~P~~~~LS~DGkrLyVaNs   99 (167)
                            ..+.++.++++++|++++++++
T Consensus       377 ------h~~~v~~~~~~p~~~~~l~s~s  398 (430)
T 2xyi_A          377 ------HTAKISDFSWNPNEPWIICSVS  398 (430)
T ss_dssp             ------CSSCEEEEEECSSSTTEEEEEE
T ss_pred             ------CCCCceEEEECCCCCCEEEEEE
Confidence                  1234899999999998888884

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.35  E-value=0.0019  Score=54.42  Aligned_cols=63  Identities=14%  Similarity=0.090  Sum_probs=43.8

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+.+|++++||| |||+.+. |.|+++| .+ .. +.+..+++                         ...|   .++|.
T Consensus        30 ~P~~ia~~pdG~-l~V~e~~-g~I~~~d-~~-G~-~~~~~~~v-------------------------~~~g---~~g~~   76 (354)
T 3a9g_A           30 VPWSIAPLGGGR-YLVTERP-GRLVLIS-PS-GK-KLVASFDV-------------------------ANVG---EAGLL   76 (354)
T ss_dssp             CEEEEEEEETTE-EEEEETT-TEEEEEC-SS-CE-EEEEECCC-------------------------CCST---TCSEE
T ss_pred             CCeEEEEcCCCe-EEEEeCC-CEEEEEe-CC-Cc-eEeeccce-------------------------eecC---CCcee
Confidence            367899999997 9999987 8999886 22 11 22222211                         0011   23599


Q ss_pred             eEEEccC---CCEEEEEeC
Q 031020           84 MIQLSLD---GKRLYVTNS   99 (167)
Q Consensus        84 ~~~LS~D---GkrLyVaNs   99 (167)
                      .++++||   +++|||+++
T Consensus        77 gia~~pdf~~~g~lyv~~~   95 (354)
T 3a9g_A           77 GLALHPEFPKKSWVYLYAS   95 (354)
T ss_dssp             EEEECTTTTTSCEEEEEEE
T ss_pred             eEEeCCCCCcCCEEEEEEe
Confidence            9999999   999999985

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=97.34  E-value=0.0013  Score=48.86  Aligned_cols=62  Identities=18%  Similarity=0.110  Sum_probs=42.4

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      +..+.+|||+++|++++...+.+..|++.-. ..+.. .+..                               ..+.+..
T Consensus       131 ~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~-~~~~~-~~~~-------------------------------~~~~~~~  177 (297)
T 2ojh_A          131 SYWHGWSPDGKSFTYCGIRDQVFDIYSMDID-SGVET-RLTH-------------------------------GEGRNDG  177 (297)
T ss_dssp             EEEEEECTTSSEEEEEEEETTEEEEEEEETT-TCCEE-ECCC-------------------------------SSSCEEE
T ss_pred             ccceEECCCCCEEEEEECCCCceEEEEEECC-CCcce-Eccc-------------------------------CCCcccc
Confidence            5678999999999987777788888887531 11111 1110                               1123788


Q ss_pred             EEEccCCCEEEEEeC
Q 031020           85 IQLSLDGKRLYVTNS   99 (167)
Q Consensus        85 ~~LS~DGkrLyVaNs   99 (167)
                      +++|+||++|+++.+
T Consensus       178 ~~~s~dg~~l~~~~~  192 (297)
T 2ojh_A          178 PDYSPDGRWIYFNSS  192 (297)
T ss_dssp             EEECTTSSEEEEEEC
T ss_pred             ceECCCCCEEEEEec
Confidence            999999999998763

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.32  E-value=0.0011  Score=56.45  Aligned_cols=98  Identities=13%  Similarity=0.134  Sum_probs=63.1

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+..|+|+++++.||++.+..+.|.++|++. .+.+.+.  ...+.                               .+.
T Consensus       247 ~P~glavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~--~~~~~-------------------------------l~~  292 (400)
T 3p5b_L          247 WPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTIL--EDEKR-------------------------------LAH  292 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTS-CCCEEEE--ECSST-------------------------------TSS
T ss_pred             ceEEEEEEeCCCEEEEEECCCCEEEEEeCCC-CccEEEE--eCCCC-------------------------------CCC
Confidence            4688999999999999999999999999763 3333221  11110                               133


Q ss_pred             eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe--eecCceeEeccCCCCCCcceeeeecC
Q 031020           84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM--AINPNFFVDFEAEPDGPALAHEMRYP  157 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l--~l~~~F~vDf~~~p~gp~~~he~r~p  157 (167)
                      -+.|+.++.+||+|+.               .+..|.++|.  .+|..  ++...    + ..|.|-.+.|..|.|
T Consensus       293 P~gl~v~~~~lywtd~---------------~~~~V~~~~~--~~G~~~~~i~~~----~-~~p~~i~v~~~~~qp  346 (400)
T 3p5b_L          293 PFSLAVFEDKVFWTDI---------------INEAIFSANR--LTGSDVNLLAEN----L-LSPEDMVLFHNLTQP  346 (400)
T ss_dssp             EEEEEEETTEEEEEES---------------SSCSEEEEES--SSCCCCEEEECS----C-SCEEEEEEESGGGSC
T ss_pred             CEEEEEeCCEEEEecC---------------CCCeEEEEEc--CCCCceEEEecC----C-CCCceEEEEeeccCC
Confidence            3455558899999993               4566777775  55543  22211    1 235565566777766

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=97.30  E-value=0.001  Score=57.64  Aligned_cols=30  Identities=20%  Similarity=0.386  Sum_probs=25.0

Q ss_pred             ceeEEEEecCCCEEEEEeCCC-------CcEEEEecc
Q 031020            4 LITDFLISLDDRFLYFSNWLH-------GDIRQYNIE   33 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~h-------g~I~qyDIs   33 (167)
                      .+..+.+|||||+|+++.|.+       .+|+++|+.
T Consensus       189 ~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~  225 (662)
T 3azo_A          189 FVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVT  225 (662)
T ss_dssp             EECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEEC
T ss_pred             cccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEEC
Confidence            456788999999999888665       579999987

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.26  E-value=0.002  Score=48.87  Aligned_cols=69  Identities=12%  Similarity=0.279  Sum_probs=49.7

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+..|.++++|+ |||+++..+.|..||.+    .++. .+.+..                             -...|.
T Consensus       231 ~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~----g~~~-~~~~~~-----------------------------~~~~~~  275 (300)
T 2qc5_A          231 RPHAITAGKNSE-IWFTEWGANQIGRITND----NTIQ-EYQLQT-----------------------------ENAEPH  275 (300)
T ss_dssp             CEEEEEECSTTC-EEEEETTTTEEEEECTT----SCEE-EEECCS-----------------------------TTCCCC
T ss_pred             CceEEEECCCCC-EEEeccCCCeEEEECCC----CcEE-EEECCc-----------------------------cCCccc
Confidence            467899999997 99999999999999963    2222 222211                             012399


Q ss_pred             eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEee
Q 031020           84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN  125 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD  125 (167)
                      .+.++++|+ ||+++               . + .++++|.+
T Consensus       276 ~i~~~~~g~-l~v~~---------------~-~-~i~~~~p~  299 (300)
T 2qc5_A          276 GITFGKDGS-VWFAL---------------K-C-KIGKLNLN  299 (300)
T ss_dssp             CEEECTTSC-EEEEC---------------S-S-EEEEEEEC
T ss_pred             eeEeCCCCC-EEEEc---------------c-C-ceEEeCCC
Confidence            999999987 99988               3 5 77777763

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.25  E-value=0.0016  Score=54.82  Aligned_cols=88  Identities=15%  Similarity=0.154  Sum_probs=53.9

Q ss_pred             ceeEEEEecC---CCEEEEEeCC---C----CcEEEEeccCCCCCeEE------EEEEeCceeecCCceeEeeCCCCCCC
Q 031020            4 LITDFLISLD---DRFLYFSNWL---H----GDIRQYNIEDPKNPVLT------GQIWVGGLFRKGSPVVAVTDDGQPYQ   67 (167)
Q Consensus         4 l~tdI~IS~D---dRfLYVSnw~---h----g~I~qyDIsdp~~pklv------g~v~~GG~~~~~~~v~v~~~~~~~~~   67 (167)
                      -+.+|+++||   +++|||++..   .    +.|.+|+.++. ..++.      ..++.++                   
T Consensus        74 g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~-~~~~~~~~~l~~~~~~~~-------------------  133 (354)
T 3a9g_A           74 GLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGS-TFKLKEVKTLIDGIPGAY-------------------  133 (354)
T ss_dssp             SEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSS-SCCEEEEEEEEEEEECCS-------------------
T ss_pred             ceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCC-CcCcCccEEEEEcCCCCC-------------------
Confidence            3678999999   9999999864   3    67888987642 11221      1122111                   


Q ss_pred             CCCccccCccCCCCCceEEEccCCCEEEEEeCCCc-cccccccccccccCcEEEEEEeeC
Q 031020           68 SDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFS-AWDCQFYPELKEKGSHMLQIDVNS  126 (167)
Q Consensus        68 p~~~~~~g~~~~g~P~~~~LS~DGkrLyVaNsl~s-~wD~Qfyp~~~~~g~~~~~~dvD~  126 (167)
                              .|   .|..|.+++||+ ||||..-.. ....|.   ..+..+.|+++|.|.
T Consensus       134 --------~h---~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d---~~~~~G~I~ri~~dG  178 (354)
T 3a9g_A          134 --------IH---NGGRIRFGPDGM-LYITTGDAADPRLAQD---LSSLAGKILRVDEEG  178 (354)
T ss_dssp             --------SC---CCCCEEECTTSC-EEEECCCTTCGGGGTC---TTCCSSEEEEECTTS
T ss_pred             --------Cc---CCceEEECCCCc-EEEEECCCCCCccccC---CCCCCeEEEEEcCCC
Confidence                    11   388999999995 999974211 111121   112346888888863

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.25  E-value=0.001  Score=55.78  Aligned_cols=92  Identities=16%  Similarity=0.214  Sum_probs=55.2

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -+..|++.+|||+|||+.+ .|.|++++- +   .++. + .+.+                  .|+ ....|   .++|.
T Consensus        19 ~P~~i~~~pdG~~l~V~e~-~G~i~~~~~-~---g~~~-~-~~~~------------------~~~-v~~~g---~~g~~   69 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLR-GGELRHWQA-G---KGLS-A-PLSG------------------VPD-VWAHG---QGGLL   69 (353)
T ss_dssp             SEEEEEECSTTCCEEEEET-TTEEEEEET-T---TEEC-C-CCBS------------------CCC-CCCST---TCSEE
T ss_pred             CcEEEEEcCCCCEEEEEeC-CceEEEEeC-C---Ccee-e-EecC------------------Ccc-cccCC---CCCce
Confidence            3578999999998999997 488888872 1   1111 0 0111                  011 01111   34689


Q ss_pred             eEEEccC---CCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCee
Q 031020           84 MIQLSLD---GKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA  132 (167)
Q Consensus        84 ~~~LS~D---GkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~  132 (167)
                      .++++||   +++|||+++-.. .+.       .....|++++.+...+.+.
T Consensus        70 gia~~pdf~~~g~lYv~~~~~~-~~g-------~~~~~v~r~~~~~~~~~~~  113 (353)
T 2g8s_A           70 DVVLAPDFAQSRRIWLSYSEVG-DDG-------KAGTAVGYGRLSDDLSKVT  113 (353)
T ss_dssp             EEEECTTHHHHCEEEEEEEEEC-SSS-------CEEEEEEEEEECTTSSBEE
T ss_pred             eEEECCCCCCCCEEEEEEeCCC-CCC-------CceeEEEEEEECCCCCCCC
Confidence            9999998   999999985110 000       0134677787765555553

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.19  E-value=0.0053  Score=50.83  Aligned_cols=76  Identities=13%  Similarity=0.165  Sum_probs=57.5

Q ss_pred             CCCc---eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCcc
Q 031020            1 MPGL---ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHR   77 (167)
Q Consensus         1 ~p~l---~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~   77 (167)
                      ||++   ++.|.+++|++.||+.....+.|..+|.+    .++..+++++|.                          ..
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~----g~v~~~i~l~g~--------------------------~D   71 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN----GDLIRTIPLDFV--------------------------KD   71 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT----CCEEEEEECSSC--------------------------SS
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC----CCEEEEEecCCC--------------------------CC
Confidence            3555   78999999999999866678899988864    668888998872                          13


Q ss_pred             CCCCCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeC
Q 031020           78 LRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNS  126 (167)
Q Consensus        78 ~~g~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~  126 (167)
                          ++-+++..+| +++|+.+               +...++.++++.
T Consensus        72 ----~EGIa~~~~g-~~~vs~E---------------~~~~l~~~~v~~  100 (255)
T 3qqz_A           72 ----LETIEYIGDN-QFVISDE---------------RDYAIYVISLTP  100 (255)
T ss_dssp             ----EEEEEECSTT-EEEEEET---------------TTTEEEEEEECT
T ss_pred             ----hHHeEEeCCC-EEEEEEC---------------CCCcEEEEEcCC
Confidence                8888988877 4777773               345666777763

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=97.13  E-value=0.0023  Score=56.04  Aligned_cols=86  Identities=13%  Similarity=0.081  Sum_probs=45.1

Q ss_pred             CceeEEEEecCCCEEEEEeCCCC-----cEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCcc
Q 031020            3 GLITDFLISLDDRFLYFSNWLHG-----DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHR   77 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg-----~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~   77 (167)
                      .-+..+.+||||++|+.++...+     .|+.||+..   .+....+...+....+..+... .++.  + +...++|. 
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~---g~~~~~~~~~~~~~~~~~~~~~-~~~~--~-~~~~~~~~-  108 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS---GQTRLLVDSKVVLPGTETLSDE-EKAR--R-ERQRIAAM-  108 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTT---CCEEEEECGGGTC------------------------CC-
T ss_pred             CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCC---CceeEccchhhcccccccccch-hhhh--h-hhhhhccc-
Confidence            34789999999999998887455     899999875   2332222211100000011110 0000  0 11111120 


Q ss_pred             CCCCCceEEEccCCCEEEEEe
Q 031020           78 LRGGPQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        78 ~~g~P~~~~LS~DGkrLyVaN   98 (167)
                        .+...+++||||++|+++.
T Consensus       109 --~~v~~~~~SpDg~~l~~~~  127 (741)
T 2ecf_A          109 --TGIVDYQWSPDAQRLLFPL  127 (741)
T ss_dssp             --EESCCCEECTTSSEEEEEE
T ss_pred             --cCcceeEECCCCCEEEEEe
Confidence              1257889999999999887

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=97.12  E-value=0.0053  Score=50.36  Aligned_cols=72  Identities=10%  Similarity=0.078  Sum_probs=51.8

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -++.+.+|||+++|..++ ..+.|+.||+.+   .+++.++.- |                             ..+.-.
T Consensus       271 ~V~~~~~Spdg~~lasgs-~D~~V~iwd~~~---~~~~~~~~~-g-----------------------------H~~~V~  316 (365)
T 4h5i_A          271 GITSMDVDMKGELAVLAS-NDNSIALVKLKD---LSMSKIFKQ-A-----------------------------HSFAIT  316 (365)
T ss_dssp             CEEEEEECTTSCEEEEEE-TTSCEEEEETTT---TEEEEEETT-S-----------------------------SSSCEE
T ss_pred             CeEeEEECCCCCceEEEc-CCCEEEEEECCC---CcEEEEecC-c-----------------------------ccCCEE
Confidence            467899999999997766 478999999765   555544322 2                             122367


Q ss_pred             eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEee
Q 031020           84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN  125 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD  125 (167)
                      .+++||||++|..+.                ...++-.+|+.
T Consensus       317 ~v~fSpdg~~laS~S----------------~D~tvrvw~ip  342 (365)
T 4h5i_A          317 EVTISPDSTYVASVS----------------AANTIHIIKLP  342 (365)
T ss_dssp             EEEECTTSCEEEEEE----------------TTSEEEEEECC
T ss_pred             EEEECCCCCEEEEEe----------------CCCeEEEEEcC
Confidence            899999999987665                24466668884

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=97.12  E-value=0.00089  Score=58.71  Aligned_cols=60  Identities=23%  Similarity=0.307  Sum_probs=42.3

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      +..+.+||||++|++++.  +.|++||+.....|++. ++...                               .+.++.
T Consensus       111 v~~~~~SpDg~~l~~~~~--~~i~~~d~~~~~~~~~~-~l~~~-------------------------------~~~~~~  156 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG--GELYLYDLKQEGKAAVR-QLTHG-------------------------------EGFATD  156 (741)
T ss_dssp             SCCCEECTTSSEEEEEET--TEEEEEESSSCSTTSCC-BCCCS-------------------------------SSCEEE
T ss_pred             cceeEECCCCCEEEEEeC--CcEEEEECCCCCcceEE-EcccC-------------------------------Cccccc
Confidence            578999999999999886  89999998753111111 11110                               123788


Q ss_pred             EEEccCCCEEEEEe
Q 031020           85 IQLSLDGKRLYVTN   98 (167)
Q Consensus        85 ~~LS~DGkrLyVaN   98 (167)
                      +++||||++|+.+.
T Consensus       157 ~~~SPDG~~la~~~  170 (741)
T 2ecf_A          157 AKLSPKGGFVSFIR  170 (741)
T ss_dssp             EEECTTSSEEEEEE
T ss_pred             ccCCCCCCEEEEEe
Confidence            99999999988765

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=97.09  E-value=0.0065  Score=50.94  Aligned_cols=62  Identities=15%  Similarity=0.057  Sum_probs=43.4

Q ss_pred             CceeEEEEecCCCEEEEEeCCC--CcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLH--GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG   80 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~h--g~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g   80 (167)
                      ..+..+.+||||++|+.+.+..  ..|+.||+..   .+.. ++. +.                              .+
T Consensus       179 ~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t---g~~~-~l~-~~------------------------------~~  223 (415)
T 2hqs_A          179 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN---GAVR-QVA-SF------------------------------PR  223 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT---CCEE-EEE-CC------------------------------SS
T ss_pred             CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC---CcEE-Eee-cC------------------------------CC
Confidence            3567899999999998877654  5899999874   2222 121 11                              12


Q ss_pred             CCceEEEccCCCEEEEEeC
Q 031020           81 GPQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        81 ~P~~~~LS~DGkrLyVaNs   99 (167)
                      ....+++||||++|+++.+
T Consensus       224 ~~~~~~~spdg~~la~~~~  242 (415)
T 2hqs_A          224 HNGAPAFSPDGSKLAFALS  242 (415)
T ss_dssp             CEEEEEECTTSSEEEEEEC
T ss_pred             cccCEEEcCCCCEEEEEEe
Confidence            2678899999999997653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.07  E-value=0.0012  Score=60.31  Aligned_cols=61  Identities=13%  Similarity=0.275  Sum_probs=44.1

Q ss_pred             eeEEEEecCCCEEEEEeCC-CCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            5 ITDFLISLDDRFLYFSNWL-HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~-hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      +.+|++.|.+.+||+++|+ .+.|.+.+.+- ...+...  ...                           .    .+|+
T Consensus       129 P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG-~~~~~l~--~~~---------------------------~----~~P~  174 (619)
T 3s94_A          129 PRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIII--NSE---------------------------I----YWPN  174 (619)
T ss_dssp             CCCEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEEEE--CSS---------------------------C----SSEE
T ss_pred             CceEEEecCCCeEEEeccCCCCEEEEEECCC-CceEEEE--eCC---------------------------C----CCCc
Confidence            5689999999999999998 46787777542 1222111  000                           1    1399


Q ss_pred             eEEEccCCCEEEEEeC
Q 031020           84 MIQLSLDGKRLYVTNS   99 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNs   99 (167)
                      -+++++++++|||+++
T Consensus       175 Glald~~~~~LY~aD~  190 (619)
T 3s94_A          175 GLTLDYEEQKLYWADA  190 (619)
T ss_dssp             EEEEETTTTEEEEEET
T ss_pred             EEEEEccCCEEEEEeC
Confidence            9999999999999995

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=97.06  E-value=0.0036  Score=52.49  Aligned_cols=62  Identities=19%  Similarity=0.145  Sum_probs=42.0

Q ss_pred             CCceeEEEEecCCCEEEEEeCCCC--cEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCC
Q 031020            2 PGLITDFLISLDDRFLYFSNWLHG--DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR   79 (167)
Q Consensus         2 p~l~tdI~IS~DdRfLYVSnw~hg--~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~   79 (167)
                      ++.+..+.+||||++|+++....+  .|+.||+..   .++ .++. +.                              .
T Consensus       222 ~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~---~~~-~~l~-~~------------------------------~  266 (415)
T 2hqs_A          222 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS---GQI-RQVT-DG------------------------------R  266 (415)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT---CCE-EECC-CC------------------------------S
T ss_pred             CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCC---CCE-EeCc-CC------------------------------C
Confidence            345788999999999997765444  489999764   222 1111 11                              1


Q ss_pred             CCCceEEEccCCCEEEEEe
Q 031020           80 GGPQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        80 g~P~~~~LS~DGkrLyVaN   98 (167)
                      +....+++||||++|+++.
T Consensus       267 ~~~~~~~~spdg~~l~~~s  285 (415)
T 2hqs_A          267 SNNTEPTWFPDSQNLAFTS  285 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEE
T ss_pred             CcccceEECCCCCEEEEEE
Confidence            1256789999999998876

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.01  E-value=0.0025  Score=55.01  Aligned_cols=61  Identities=8%  Similarity=0.027  Sum_probs=40.2

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCc----EEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGD----IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR   79 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~----I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~   79 (167)
                      .+.+|++++|+++|||+++..+.    |.+++-..  ..+....+.                            ...+  
T Consensus       180 ~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g--~~~~~~~l~----------------------------~~~~--  227 (430)
T 3tc9_A          180 KVRTICWTHEADSMIITNDQNNNDRPNNYILTRES--GFKVITELT----------------------------KGQN--  227 (430)
T ss_dssp             CEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG--TSCSEEEEE----------------------------ECSS--
T ss_pred             CcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC--ceeeeeeec----------------------------cCCC--
Confidence            47899999999999999996553    33333221  111011111                            1123  


Q ss_pred             CCCceEEEccCCCEEEEEe
Q 031020           80 GGPQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        80 g~P~~~~LS~DGkrLyVaN   98 (167)
                        |+.+++++++.+|||++
T Consensus       228 --p~giavdp~~g~lyv~d  244 (430)
T 3tc9_A          228 --CNGAETHPINGELYFNS  244 (430)
T ss_dssp             --CCCEEECTTTCCEEEEE
T ss_pred             --ceEEEEeCCCCEEEEEE
Confidence              99999999888899998

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.00  E-value=0.0049  Score=47.60  Aligned_cols=35  Identities=14%  Similarity=0.170  Sum_probs=28.5

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKN   37 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~   37 (167)
                      ..++.+.+|||++.+.+++-..|.|+.||+.....
T Consensus       260 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  294 (357)
T 3i2n_A          260 STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQ  294 (357)
T ss_dssp             SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSC
T ss_pred             CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcc
Confidence            45788999999996667777789999999986443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=97.00  E-value=0.011  Score=45.63  Aligned_cols=61  Identities=11%  Similarity=0.041  Sum_probs=45.3

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .-++.|.+|+|+++|+++. ..|.|++||+.+   .+....+.  +                             ..+..
T Consensus        33 ~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~---~~~~~~~~--~-----------------------------h~~~v   77 (369)
T 3zwl_B           33 RPLTQVKYNKEGDLLFSCS-KDSSASVWYSLN---GERLGTLD--G-----------------------------HTGTI   77 (369)
T ss_dssp             SCEEEEEECTTSCEEEEEE-SSSCEEEEETTT---CCEEEEEC--C-----------------------------CSSCE
T ss_pred             ceEEEEEEcCCCCEEEEEe-CCCEEEEEeCCC---chhhhhhh--h-----------------------------cCCcE
Confidence            4588999999999998776 478999999875   34443332  1                             11236


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      ..+++++||++|+++.
T Consensus        78 ~~~~~~~~~~~l~s~~   93 (369)
T 3zwl_B           78 WSIDVDCFTKYCVTGS   93 (369)
T ss_dssp             EEEEECTTSSEEEEEE
T ss_pred             EEEEEcCCCCEEEEEe
Confidence            7889999999998886

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=96.99  E-value=0.0054  Score=46.50  Aligned_cols=28  Identities=14%  Similarity=0.198  Sum_probs=25.1

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEec
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNI   32 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDI   32 (167)
                      .+.+|.+++|++ ||+++...+.|.+||.
T Consensus       147 ~~~~i~~d~~g~-l~v~~~~~~~i~~~~~  174 (300)
T 2qc5_A          147 YPAFITLGSDNA-LWFTENQNNSIGRITN  174 (300)
T ss_dssp             CEEEEEECTTSS-EEEEETTTTEEEEECT
T ss_pred             CceeEEECCCCC-EEEEecCCCeEEEECC
Confidence            468899999998 9999998899999986

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=96.96  E-value=0.011  Score=44.99  Aligned_cols=60  Identities=17%  Similarity=0.078  Sum_probs=46.1

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .-++.|.+|+|+++|++++ ..+.|+.||+..   .+....+...+                                ..
T Consensus       184 ~~i~~~~~~~~~~~l~~~~-~dg~i~~~d~~~---~~~~~~~~~~~--------------------------------~v  227 (337)
T 1gxr_A          184 DGASCIDISNDGTKLWTGG-LDNTVRSWDLRE---GRQLQQHDFTS--------------------------------QI  227 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEE-TTSEEEEEETTT---TEEEEEEECSS--------------------------------CE
T ss_pred             CceEEEEECCCCCEEEEEe-cCCcEEEEECCC---CceEeeecCCC--------------------------------ce
Confidence            4578999999999998877 478999999875   44444433222                                26


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      ..+++|+||++|+++.
T Consensus       228 ~~~~~s~~~~~l~~~~  243 (337)
T 1gxr_A          228 FSLGYCPTGEWLAVGM  243 (337)
T ss_dssp             EEEEECTTSSEEEEEE
T ss_pred             EEEEECCCCCEEEEEc
Confidence            7889999999999987

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=96.94  E-value=0.0021  Score=51.12  Aligned_cols=28  Identities=14%  Similarity=0.227  Sum_probs=20.6

Q ss_pred             EEEEecCCCEEEEEeCCCC--cEEEEeccC
Q 031020            7 DFLISLDDRFLYFSNWLHG--DIRQYNIED   34 (167)
Q Consensus         7 dI~IS~DdRfLYVSnw~hg--~I~qyDIsd   34 (167)
                      ...+|||||+|+++....+  .|+.+|+..
T Consensus        40 ~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~   69 (388)
T 3pe7_A           40 QKCFTRDGSKLLFGGAFDGPWNYYLLDLNT   69 (388)
T ss_dssp             SCCBCTTSCEEEEEECTTSSCEEEEEETTT
T ss_pred             CccCCCCCCEEEEEEcCCCCceEEEEeCCC
Confidence            3679999998887776455  477777653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.93  E-value=0.0054  Score=51.41  Aligned_cols=93  Identities=12%  Similarity=0.147  Sum_probs=54.0

Q ss_pred             eeEEEEecC---CCEEEEEeCC-------CCcEEEEeccCCCCCeEEE--EEEeCceeecCCceeEeeCCCCCCCCCCcc
Q 031020            5 ITDFLISLD---DRFLYFSNWL-------HGDIRQYNIEDPKNPVLTG--QIWVGGLFRKGSPVVAVTDDGQPYQSDVPE   72 (167)
Q Consensus         5 ~tdI~IS~D---dRfLYVSnw~-------hg~I~qyDIsdp~~pklvg--~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~   72 (167)
                      +.+|+++||   +++|||+...       ...|.+|+.++ ...++..  .+..+-                   |..  
T Consensus        68 ~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~-~~~~~~~~~~i~~~~-------------------p~~--  125 (353)
T 2g8s_A           68 LLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSD-DLSKVTDFRTVFRQM-------------------PKL--  125 (353)
T ss_dssp             EEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECT-TSSBEEEEEEEEECS-------------------SCC--
T ss_pred             ceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECC-CCCCCCceEEEEEEC-------------------CCC--
Confidence            468999998   9999999765       45788888764 2233321  111111                   100  


Q ss_pred             ccCccCCCCCceEEEccCCCEEEEEeCCCccc-cccccccccccCcEEEEEEeeC
Q 031020           73 VQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAW-DCQFYPELKEKGSHMLQIDVNS  126 (167)
Q Consensus        73 ~~g~~~~g~P~~~~LS~DGkrLyVaNsl~s~w-D~Qfyp~~~~~g~~~~~~dvD~  126 (167)
                      ..+.|   .|..|.+++|| +||||+.-...- ..|.   +-...+.|+++|.|.
T Consensus       126 ~~~~h---~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~---~~~~~g~I~ri~~dG  173 (353)
T 2g8s_A          126 STGNH---FGGRLVFDGKG-YLFIALGENNQRPTAQD---LDKLQGKLVRLTDQG  173 (353)
T ss_dssp             BSSSC---CCCCEEECSSS-EEEEEECCTTCGGGGGC---TTSCTTEEEEEETTS
T ss_pred             CCCcc---cCccEEECCCC-cEEEEECCCCCCCccCC---CCCCCeEEEEECCCC
Confidence            00112   37889999999 899997311110 0111   112346788888863

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=96.93  E-value=0.0015  Score=61.12  Aligned_cols=85  Identities=12%  Similarity=0.109  Sum_probs=57.0

Q ss_pred             CceeEEEEecCCCEEEE------------EeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCC
Q 031020            3 GLITDFLISLDDRFLYF------------SNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDV   70 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYV------------Snw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~   70 (167)
                      +-+.++.+|+|++++|+            +.-....|+.||+..   .++. .+. .+                      
T Consensus       557 ~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~---~~~~-~l~-~~----------------------  609 (1045)
T 1k32_A          557 GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT---RKVT-EVK-NN----------------------  609 (1045)
T ss_dssp             BCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTT---CCEE-EEE-EE----------------------
T ss_pred             CChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCC---CcEE-Eee-cC----------------------
Confidence            34678999999988886            222345788888765   2221 111 11                      


Q ss_pred             ccccCccCCCCCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCC---CCeee-cCceeEecc
Q 031020           71 PEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEK---GGMAI-NPNFFVDFE  142 (167)
Q Consensus        71 ~~~~g~~~~g~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~---G~l~l-~~~F~vDf~  142 (167)
                                 +..+.+|+||++|++++.                + .+..+|+++.+   +.+.+ +-++.+|..
T Consensus       610 -----------v~~~~~S~DG~~l~~~~~----------------~-~i~~~d~~~~~~~~~~~~~~~~~~~i~~~  657 (1045)
T 1k32_A          610 -----------LTDLRLSADRKTVMVRKD----------------D-GKIYTFPLEKPEDERTVETDKRPLVSSIH  657 (1045)
T ss_dssp             -----------EEEEEECTTSCEEEEEET----------------T-SCEEEEESSCTTSCEECCCCSSCEEEEHH
T ss_pred             -----------cceEEECCCCCEEEEEcC----------------C-cEEEEeCccCcccCCccccceeEEEEChh
Confidence                       667899999999999982                2 56778885543   34667 567777663

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=96.91  E-value=0.0072  Score=46.55  Aligned_cols=61  Identities=8%  Similarity=-0.021  Sum_probs=46.6

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -++.+.+|||+++|+.+. ..|.|+.||+..   .+++..+..                               ..+..+
T Consensus       275 ~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~---~~~~~~~~~-------------------------------~~~~v~  319 (368)
T 3mmy_A          275 AVNGIAFHPVHGTLATVG-SDGRFSFWDKDA---RTKLKTSEQ-------------------------------LDQPIS  319 (368)
T ss_dssp             CEEEEEECTTTCCEEEEE-TTSCEEEEETTT---TEEEEECCC-------------------------------CSSCEE
T ss_pred             ceEEEEEecCCCEEEEEc-cCCeEEEEECCC---CcEEEEecC-------------------------------CCCCce
Confidence            488999999999997776 478999999874   444433321                               122378


Q ss_pred             eEEEccCCCEEEEEeC
Q 031020           84 MIQLSLDGKRLYVTNS   99 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNs   99 (167)
                      .+++|+||++|.++.+
T Consensus       320 ~~~~s~~g~~l~~~s~  335 (368)
T 3mmy_A          320 ACCFNHNGNIFAYASS  335 (368)
T ss_dssp             EEEECTTSSCEEEEEC
T ss_pred             EEEECCCCCeEEEEec
Confidence            8999999999999975

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.91  E-value=0.0089  Score=45.27  Aligned_cols=70  Identities=14%  Similarity=0.156  Sum_probs=49.3

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+..|.+++|++ ||++++..+.|.+||. +   .++. .+.+.+                             -...|.
T Consensus       184 ~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~---g~~~-~~~~~~-----------------------------~~~~~~  228 (299)
T 2z2n_A          184 GPVGITKGNDDA-LWFVEIIGNKIGRITT-S---GEIT-EFKIPT-----------------------------PNARPH  228 (299)
T ss_dssp             CEEEEEECTTSS-EEEEETTTTEEEEECT-T---CCEE-EEECSS-----------------------------TTCCEE
T ss_pred             cceeEEECCCCC-EEEEccCCceEEEECC-C---CcEE-EEECCC-----------------------------CCCCce
Confidence            367899999987 8999999999999996 2   2222 122111                             012399


Q ss_pred             eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEe
Q 031020           84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDV  124 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dv  124 (167)
                      .++++++|+ |||++.               .+..+.++|.
T Consensus       229 ~i~~~~~g~-l~v~~~---------------~~~~i~~~d~  253 (299)
T 2z2n_A          229 AITAGAGID-LWFTEW---------------GANKIGRLTS  253 (299)
T ss_dssp             EEEECSTTC-EEEEET---------------TTTEEEEEET
T ss_pred             eEEECCCCC-EEEecc---------------CCceEEEECC
Confidence            999999987 999983               3556777776

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=96.91  E-value=0.015  Score=44.73  Aligned_cols=61  Identities=8%  Similarity=0.028  Sum_probs=47.0

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .-++.|.+|+|+++|+.++. .+.|+.||+..   .+....+...+                                ..
T Consensus        75 ~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~---~~~~~~~~~~~--------------------------------~v  118 (369)
T 3zwl_B           75 GTIWSIDVDCFTKYCVTGSA-DYSIKLWDVSN---GQCVATWKSPV--------------------------------PV  118 (369)
T ss_dssp             SCEEEEEECTTSSEEEEEET-TTEEEEEETTT---CCEEEEEECSS--------------------------------CE
T ss_pred             CcEEEEEEcCCCCEEEEEeC-CCeEEEEECCC---CcEEEEeecCC--------------------------------Ce
Confidence            35789999999999977764 78999999875   44554444222                                27


Q ss_pred             ceEEEccCCCEEEEEeC
Q 031020           83 QMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNs   99 (167)
                      ..++++++|++|+++..
T Consensus       119 ~~~~~~~~~~~l~~~~~  135 (369)
T 3zwl_B          119 KRVEFSPCGNYFLAILD  135 (369)
T ss_dssp             EEEEECTTSSEEEEEEC
T ss_pred             EEEEEccCCCEEEEecC
Confidence            88999999999999873

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=96.88  E-value=0.0028  Score=54.49  Aligned_cols=75  Identities=11%  Similarity=0.108  Sum_probs=46.8

Q ss_pred             eEEEEecCCCEEEEEeCCC---CcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            6 TDFLISLDDRFLYFSNWLH---GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         6 tdI~IS~DdRfLYVSnw~h---g~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .++.+|||||+|+.+.+..   ..|+.+|+.. ...+   ++ ++.                              .+..
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~-g~~~---~l-~~~------------------------------~~~~  197 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS-GGLR---VF-DSG------------------------------EGSF  197 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTT-CCCE---EE-CCS------------------------------SCEE
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC-CCce---Ee-ecC------------------------------CCcc
Confidence            5788999999998665432   4588888664 2221   22 111                              1125


Q ss_pred             ceEEEccCCCEEEEEeCCCccccccccccccccC-cEEEEEEeeCCCCCee
Q 031020           83 QMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKG-SHMLQIDVNSEKGGMA  132 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g-~~~~~~dvD~~~G~l~  132 (167)
                      ...++||||++|+.+.               ++| .++.++|+  ++|.++
T Consensus       198 ~~~~~SpDG~~l~~~~---------------~~~~~~i~~~d~--~~~~~~  231 (582)
T 3o4h_A          198 SSASISPGMKVTAGLE---------------TAREARLVTVDP--RDGSVE  231 (582)
T ss_dssp             EEEEECTTSCEEEEEE---------------CSSCEEEEEECT--TTCCEE
T ss_pred             ccceECCCCCEEEEcc---------------CCCeeEEEEEcC--CCCcEE
Confidence            7789999999999444               223 36766776  566654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=96.84  E-value=0.0056  Score=49.64  Aligned_cols=63  Identities=8%  Similarity=0.146  Sum_probs=45.3

Q ss_pred             eeEEEEecCCCEEEEEe--CCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            5 ITDFLISLDDRFLYFSN--WLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSn--w~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      ++.+.+|+|+++|+++.  -..+.|+.||+.....+.....+  ..                              .++.
T Consensus       223 ~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~--~~------------------------------~~~v  270 (402)
T 2aq5_A          223 PVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL--DT------------------------------SSGV  270 (402)
T ss_dssp             CCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC--CC------------------------------CSSC
T ss_pred             ceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec--cC------------------------------CCce
Confidence            67899999999888764  46789999998864433222211  11                              1237


Q ss_pred             ceEEEccCCCEEEEEeC
Q 031020           83 QMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNs   99 (167)
                      ..+++|+||++||++.+
T Consensus       271 ~~~~~s~~~~~l~~~g~  287 (402)
T 2aq5_A          271 LLPFFDPDTNIVYLCGK  287 (402)
T ss_dssp             EEEEEETTTTEEEEEET
T ss_pred             eEEEEcCCCCEEEEEEc
Confidence            78999999999999873

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=96.83  E-value=0.037  Score=42.48  Aligned_cols=31  Identities=13%  Similarity=0.292  Sum_probs=25.9

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      +-++.|.+|||+++|+.++ ..+.|+.||+..
T Consensus       216 ~~v~~~~~s~~~~~l~s~s-~Dg~i~iwd~~~  246 (340)
T 4aow_A          216 GYLNTVTVSPDGSLCASGG-KDGQAMLWDLNE  246 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEE-TTCEEEEEETTT
T ss_pred             CcEEEEEECCCCCEEEEEe-CCCeEEEEEecc
Confidence            3578899999999997766 578999999875

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.80  E-value=0.013  Score=53.62  Aligned_cols=96  Identities=16%  Similarity=0.146  Sum_probs=62.0

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+.+|+|+++++.||++....+.|.++|++. ...++.    .++ +                         .+    |-
T Consensus       167 ~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG-~~~~v~----~~~-l-------------------------~~----P~  211 (628)
T 4a0p_A          167 RANGLTIDYAKRRLYWTDLDTNLIESSNMLG-LNREVI----ADD-L-------------------------PH----PF  211 (628)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEE----EEC-C-------------------------SC----EE
T ss_pred             CcceEEEccccCEEEEEECCCCEEEEEcCCC-CceEEe----ecc-C-------------------------CC----ce
Confidence            4678999999999999999999999999864 222322    111 0                         12    65


Q ss_pred             eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe--eecCceeEeccCCCCCCcceeeeecCC
Q 031020           84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM--AINPNFFVDFEAEPDGPALAHEMRYPG  158 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l--~l~~~F~vDf~~~p~gp~~~he~r~pg  158 (167)
                      -+++  ++.+||||+.               .+..|.++|.  .+|+-  .+....     ..|.|-..-|+.|-||
T Consensus       212 glav--~~~~ly~tD~---------------~~~~I~~~dk--~tg~~~~~l~~~~-----~~p~~i~v~~~~~q~~  264 (628)
T 4a0p_A          212 GLTQ--YQDYIYWTDW---------------SRRSIERANK--TSGQNRTIIQGHL-----DYVMDILVFHSSRQSG  264 (628)
T ss_dssp             EEEE--ETTEEEEEET---------------TTTEEEEEET--TTCCSCEEEECSC-----CSCCEEEEECGGGSCC
T ss_pred             EEEE--ECCEEEEecC---------------CCCEEEEEEC--CCCCceEEEecCC-----CCcceeeeeeeccccc
Confidence            5555  6789999993               4667877776  55542  222211     2355545667766665

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=96.78  E-value=0.0088  Score=46.89  Aligned_cols=30  Identities=23%  Similarity=0.113  Sum_probs=21.2

Q ss_pred             eeEEEEecCCCEEEEEeCCC--C--cEEEEeccC
Q 031020            5 ITDFLISLDDRFLYFSNWLH--G--DIRQYNIED   34 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~h--g--~I~qyDIsd   34 (167)
                      +..+.+||||++|++.....  +  .|+++|+..
T Consensus        61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~   94 (347)
T 2gop_A           61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLET   94 (347)
T ss_dssp             CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTT
T ss_pred             CCCeEECCCCCEEEEEEeccCCCcceEEEEECCC
Confidence            46789999999887766533  3  477777653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=96.78  E-value=0.026  Score=43.94  Aligned_cols=64  Identities=8%  Similarity=0.120  Sum_probs=46.0

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .-++.|.+|+|+++|+.++ ..+.|+.||+..   .++......-+                             ..+..
T Consensus        53 ~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~---~~~~~~~~~~~-----------------------------~~~~v   99 (372)
T 1k8k_C           53 GQVTGVDWAPDSNRIVTCG-TDRNAYVWTLKG---RTWKPTLVILR-----------------------------INRAA   99 (372)
T ss_dssp             SCEEEEEEETTTTEEEEEE-TTSCEEEEEEET---TEEEEEEECCC-----------------------------CSSCE
T ss_pred             CcccEEEEeCCCCEEEEEc-CCCeEEEEECCC---CeeeeeEEeec-----------------------------CCCce
Confidence            4578999999999998777 478999999864   33332222211                             12237


Q ss_pred             ceEEEccCCCEEEEEeC
Q 031020           83 QMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNs   99 (167)
                      ..+++++||++|+++.+
T Consensus       100 ~~~~~~~~~~~l~~~~~  116 (372)
T 1k8k_C          100 RCVRWAPNEKKFAVGSG  116 (372)
T ss_dssp             EEEEECTTSSEEEEEET
T ss_pred             eEEEECCCCCEEEEEeC
Confidence            88999999999999873

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.77  E-value=0.0092  Score=45.17  Aligned_cols=29  Identities=14%  Similarity=0.229  Sum_probs=25.8

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEec
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNI   32 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDI   32 (167)
                      ..+.+|.+++||+ |||+++..+.|..||.
T Consensus       225 ~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          225 ARPHAITAGAGID-LWFTEWGANKIGRLTS  253 (299)
T ss_dssp             CCEEEEEECSTTC-EEEEETTTTEEEEEET
T ss_pred             CCceeEEECCCCC-EEEeccCCceEEEECC
Confidence            3578899999997 9999999999999996

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.75  E-value=0.022  Score=46.37  Aligned_cols=64  Identities=16%  Similarity=0.135  Sum_probs=46.8

Q ss_pred             CceeEEEEecCCCEEEEEeC-CCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNW-LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw-~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      .-++.+.+|+|+++|++++. ..|.|++||+..   .++.....+.+                             ..+.
T Consensus       304 ~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~---~~~~~~~~~~~-----------------------------h~~~  351 (401)
T 4aez_A          304 SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS---SGLTKQVDIPA-----------------------------HDTR  351 (401)
T ss_dssp             SCEEEEEECSSSSEEEEEECTTTCEEEEEEEET---TEEEEEEEEEC-----------------------------CSSC
T ss_pred             CcEEEEEECCCCCeEEEEeecCCCcEEEEecCC---ccceeEEEecC-----------------------------CCCC
Confidence            45789999999999999853 689999999875   33332222212                             1123


Q ss_pred             CceEEEccCCCEEEEEe
Q 031020           82 PQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaN   98 (167)
                      ...+++|+||++|+++.
T Consensus       352 v~~~~~s~dg~~l~s~~  368 (401)
T 4aez_A          352 VLYSALSPDGRILSTAA  368 (401)
T ss_dssp             CCEEEECTTSSEEEEEC
T ss_pred             EEEEEECCCCCEEEEEe
Confidence            77899999999999887

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=96.72  E-value=0.021  Score=46.34  Aligned_cols=63  Identities=24%  Similarity=0.272  Sum_probs=46.1

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCc-EEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGD-IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~-I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      .-++.|.+|||+++|..+. ..+. |+.||+..   .+.+.++..|.                             ..+.
T Consensus       196 ~~v~~~~~s~~g~~l~s~s-~d~~~v~iwd~~~---~~~~~~~~~g~-----------------------------h~~~  242 (355)
T 3vu4_A          196 NPIKMVRLNRKSDMVATCS-QDGTIIRVFKTED---GVLVREFRRGL-----------------------------DRAD  242 (355)
T ss_dssp             SCEEEEEECTTSSEEEEEE-TTCSEEEEEETTT---CCEEEEEECTT-----------------------------CCSC
T ss_pred             CceEEEEECCCCCEEEEEe-CCCCEEEEEECCC---CcEEEEEEcCC-----------------------------CCCc
Confidence            3478999999999996665 4677 99999875   45555544331                             1123


Q ss_pred             CceEEEccCCCEEEEEe
Q 031020           82 PQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaN   98 (167)
                      -..+++||||++|..+.
T Consensus       243 v~~~~~s~~~~~l~s~s  259 (355)
T 3vu4_A          243 VVDMKWSTDGSKLAVVS  259 (355)
T ss_dssp             EEEEEECTTSCEEEEEE
T ss_pred             EEEEEECCCCCEEEEEE
Confidence            67899999999998887

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.70  E-value=0.0066  Score=55.07  Aligned_cols=72  Identities=8%  Similarity=0.112  Sum_probs=50.8

Q ss_pred             eeEEEE-------ecCCCEEEEEeCCCCc------EEEEeccCCCCCeEE-----EEEEeCceeecCCceeEeeCCCCCC
Q 031020            5 ITDFLI-------SLDDRFLYFSNWLHGD------IRQYNIEDPKNPVLT-----GQIWVGGLFRKGSPVVAVTDDGQPY   66 (167)
Q Consensus         5 ~tdI~I-------S~DdRfLYVSnw~hg~------I~qyDIsdp~~pklv-----g~v~~GG~~~~~~~v~v~~~~~~~~   66 (167)
                      +.+|.+       ++|+++|||++|..+.      |..++...  +.++.     ..+.                     
T Consensus       188 p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~--~G~~~~~~~~~~v~---------------------  244 (496)
T 3kya_A          188 IRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNA--DGTFDDRSDIQLIA---------------------  244 (496)
T ss_dssp             EEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCT--TSCCSTTSCEEEEE---------------------
T ss_pred             CcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCC--CCceeecccceeec---------------------
Confidence            788999       9999999999998643      44444221  11211     1121                     


Q ss_pred             CCCCccccCccCCCCCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEee
Q 031020           67 QSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN  125 (167)
Q Consensus        67 ~p~~~~~~g~~~~g~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD  125 (167)
                             .+.+    |..+++++++++|||++.               ..+.++++|.+
T Consensus       245 -------~~~~----p~giavdp~~g~LYvtd~---------------~~g~V~r~d~~  277 (496)
T 3kya_A          245 -------AYKQ----CNGATIHPINGELYFNSY---------------EKGQVFRLDLV  277 (496)
T ss_dssp             -------EESC----CCCEEECTTTCCEEEEET---------------TTTEEEEECHH
T ss_pred             -------cCCC----ceEEEEcCCCCeEEEEEC---------------CCCEEEEEecc
Confidence                   1234    999999999999999993               46688999987

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.70  E-value=0.037  Score=48.48  Aligned_cols=120  Identities=10%  Similarity=0.104  Sum_probs=64.1

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -+..|++.+||| |||+.+..+.|++++-.+ ...+.+..+.  .                     ... . -.-.+++-
T Consensus        28 ~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~-g~~~~~~~~~--~---------------------~~~-~-~~g~~Gll   80 (454)
T 1cru_A           28 KPHALLWGPDNQ-IWLTERATGKILRVNPES-GSVKTVFQVP--E---------------------IVN-D-ADGQNGLL   80 (454)
T ss_dssp             SEEEEEECTTSC-EEEEETTTCEEEEECTTT-CCEEEEEECT--T---------------------CCC-C-TTSSCSEE
T ss_pred             CceEEEEcCCCc-EEEEEcCCCEEEEEECCC-CcEeEEecCC--c---------------------ccc-c-cCCCCcee
Confidence            356899999998 888888767788776432 1111111111  1                     000 0 01135688


Q ss_pred             eEEEccC---CCEEEEEeCCCcc-ccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCCCCcceeeeec
Q 031020           84 MIQLSLD---GKRLYVTNSLFSA-WDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRY  156 (167)
Q Consensus        84 ~~~LS~D---GkrLyVaNsl~s~-wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~gp~~~he~r~  156 (167)
                      .++++||   +++|||+++-..+ .....    ......|++++.+..++.+.--+..+-.+.....  -.+|.|.|
T Consensus        81 gia~~Pdf~~~g~lYv~~s~~~~~~~~~~----~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~--H~~~~l~f  151 (454)
T 1cru_A           81 GFAFHPDFKNNPYIYISGTFKNPKSTDKE----LPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKD--HQSGRLVI  151 (454)
T ss_dssp             EEEECTTTTTSCEEEEEEEEECTTC--CC----SCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSS--CCEEEEEE
T ss_pred             EEEECCCcCcCCEEEEEEeccccCCCccc----cccccEEEEEEECCCCCCcCCcEEEEEcCCCCCC--CCCCeEeE
Confidence            9999999   9999999951000 00000    0013578888887666655322223323432111  13566666

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=96.69  E-value=0.024  Score=43.56  Aligned_cols=66  Identities=14%  Similarity=0.062  Sum_probs=43.7

Q ss_pred             CceeEEEEecCC-CEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            3 GLITDFLISLDD-RFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         3 ~l~tdI~IS~Dd-RfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      +.++.|++|||+ ++| +|+-.++.|++||+.........-.-.+-|                             ..+.
T Consensus        39 ~~V~~v~~sp~~~~~l-~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~-----------------------------h~~~   88 (340)
T 4aow_A           39 GWVTQIATTPQFPDMI-LSASRDKTIIMWKLTRDETNYGIPQRALRG-----------------------------HSHF   88 (340)
T ss_dssp             SCEEEEEECTTCTTEE-EEEETTSCEEEEEECCSSSCSEEEEEEECC-----------------------------CSSC
T ss_pred             CCEEEEEEeCCCCCEE-EEEcCCCeEEEEECCCCCcccceeeEEEeC-----------------------------CCCC
Confidence            458899999985 555 566568999999998643222111111111                             1223


Q ss_pred             CceEEEccCCCEEEEEe
Q 031020           82 PQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaN   98 (167)
                      ...+++|+||++|+.+.
T Consensus        89 V~~~~~s~dg~~l~s~~  105 (340)
T 4aow_A           89 VSDVVISSDGQFALSGS  105 (340)
T ss_dssp             EEEEEECTTSSEEEEEE
T ss_pred             EEEEEECCCCCEEEEEc
Confidence            67889999999998876

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=96.68  E-value=0.0062  Score=53.19  Aligned_cols=59  Identities=19%  Similarity=0.223  Sum_probs=39.4

Q ss_pred             eEEEEec--CCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            6 TDFLISL--DDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         6 tdI~IS~--DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      ..+.+|+  ||++||++++. +.++.|+++.  ..+...++. +|.                               ++.
T Consensus       313 ~~~~~sp~~dg~~l~~~~~~-g~~~l~~~~~--~~~~~~~l~-~~~-------------------------------~~v  357 (706)
T 2z3z_A          313 HPLTFLPGSNNQFIWQSRRD-GWNHLYLYDT--TGRLIRQVT-KGE-------------------------------WEV  357 (706)
T ss_dssp             SCCEECTTCSSEEEEEECTT-SSCEEEEEET--TSCEEEECC-CSS-------------------------------SCE
T ss_pred             CCceeecCCCCEEEEEEccC-CccEEEEEEC--CCCEEEecC-CCC-------------------------------eEE
Confidence            5689999  99999999864 6677777652  122233332 221                               122


Q ss_pred             --eEEEccCCCEEEEEeC
Q 031020           84 --MIQLSLDGKRLYVTNS   99 (167)
Q Consensus        84 --~~~LS~DGkrLyVaNs   99 (167)
                        .+++|+||++||++++
T Consensus       358 ~~~~~~spdg~~l~~~~~  375 (706)
T 2z3z_A          358 TNFAGFDPKGTRLYFEST  375 (706)
T ss_dssp             EEEEEECTTSSEEEEEES
T ss_pred             EeeeEEcCCCCEEEEEec
Confidence              2789999999999985

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=96.67  E-value=0.017  Score=45.54  Aligned_cols=61  Identities=11%  Similarity=0.094  Sum_probs=44.9

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .-+..|.+|||+++|..+. ..|.|+.||+..   .+.+..+....                               ..-
T Consensus        14 ~~V~~~~fsp~~~~l~s~~-~dg~v~lWd~~~---~~~~~~~~~~~-------------------------------~~v   58 (304)
T 2ynn_A           14 DRVKGIDFHPTEPWVLTTL-YSGRVELWNYET---QVEVRSIQVTE-------------------------------TPV   58 (304)
T ss_dssp             SCEEEEEECSSSSEEEEEE-TTSEEEEEETTT---TEEEEEEECCS-------------------------------SCE
T ss_pred             CceEEEEECCCCCEEEEEc-CCCcEEEEECCC---CceeEEeeccC-------------------------------CcE
Confidence            3578999999999998777 478999999864   44444443211                               114


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      +.+++++||++|+++.
T Consensus        59 ~~~~~~~~~~~l~s~s   74 (304)
T 2ynn_A           59 RAGKFIARKNWIIVGS   74 (304)
T ss_dssp             EEEEEEGGGTEEEEEE
T ss_pred             EEEEEeCCCCEEEEEC
Confidence            6778999999998887

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=96.65  E-value=0.025  Score=45.37  Aligned_cols=60  Identities=20%  Similarity=0.236  Sum_probs=44.7

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+..+.+|||+++|..++ ..+.|+.||+..   .+++.++.  +                             ..+..+
T Consensus       166 ~v~~~~~spdg~~lasg~-~dg~i~iwd~~~---~~~~~~~~--~-----------------------------h~~~v~  210 (321)
T 3ow8_A          166 FILSIAYSPDGKYLASGA-IDGIINIFDIAT---GKLLHTLE--G-----------------------------HAMPIR  210 (321)
T ss_dssp             CEEEEEECTTSSEEEEEE-TTSCEEEEETTT---TEEEEEEC--C-----------------------------CSSCCC
T ss_pred             eEEEEEECCCCCEEEEEc-CCCeEEEEECCC---CcEEEEEc--c-----------------------------cCCcee
Confidence            478899999999998776 478999999864   45544332  1                             012267


Q ss_pred             eEEEccCCCEEEEEe
Q 031020           84 MIQLSLDGKRLYVTN   98 (167)
Q Consensus        84 ~~~LS~DGkrLyVaN   98 (167)
                      .+++||||++|+.+.
T Consensus       211 ~l~~spd~~~l~s~s  225 (321)
T 3ow8_A          211 SLTFSPDSQLLVTAS  225 (321)
T ss_dssp             EEEECTTSCEEEEEC
T ss_pred             EEEEcCCCCEEEEEc
Confidence            899999999998876

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=96.65  E-value=0.0064  Score=50.44  Aligned_cols=66  Identities=9%  Similarity=0.037  Sum_probs=48.9

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      ..+.+|.+|+++..+++++-..|.|++||+......+.+..+...                               .+.+
T Consensus       232 ~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~-------------------------------~~~v  280 (430)
T 2xyi_A          232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH-------------------------------TAEV  280 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC-------------------------------SSCE
T ss_pred             CCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC-------------------------------CCCe
Confidence            357899999988888888888999999999864433444333211                               1238


Q ss_pred             ceEEEccCCCEEEEEeC
Q 031020           83 QMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNs   99 (167)
                      +.++++++|++++++.+
T Consensus       281 ~~i~~~p~~~~~l~tg~  297 (430)
T 2xyi_A          281 NCLSFNPYSEFILATGS  297 (430)
T ss_dssp             EEEEECSSCTTEEEEEE
T ss_pred             EEEEeCCCCCCEEEEEe
Confidence            89999999998887774

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.61  E-value=0.0098  Score=54.19  Aligned_cols=62  Identities=19%  Similarity=0.327  Sum_probs=45.2

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      +.+|.++++++.||+|.+..+.|.+++++...   ....+...|.                              ..|+.
T Consensus        42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~---~~~~v~~~~~------------------------------~~P~G   88 (619)
T 3s94_A           42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE---SVQNVVVSGL------------------------------LSPDG   88 (619)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC------------------------------SCEEE
T ss_pred             eEEEEEEeCCCEEEEEECCCCeEEEEEccCCC---ceEEEEeCCC------------------------------CCcCe
Confidence            67889999999999999999999999876321   1111222220                              13999


Q ss_pred             EEEccCCCEEEEEeC
Q 031020           85 IQLSLDGKRLYVTNS   99 (167)
Q Consensus        85 ~~LS~DGkrLyVaNs   99 (167)
                      +++++.+++||+|++
T Consensus        89 lAvD~~~~~ly~~d~  103 (619)
T 3s94_A           89 LACDWLGEKLYWTDS  103 (619)
T ss_dssp             EEEETTTTEEEEEET
T ss_pred             EEEEecCCEEEEEeC
Confidence            999999999999995

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=96.60  E-value=0.0048  Score=51.80  Aligned_cols=59  Identities=14%  Similarity=0.139  Sum_probs=42.7

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -++.|++|||||+|..+. ..+.|++||.+    .++..++.  |                             ..+.-.
T Consensus        18 ~V~~~a~spdg~~las~~-~d~~v~iWd~~----~~~~~~l~--g-----------------------------h~~~V~   61 (577)
T 2ymu_A           18 SVRGVAFSPDGQTIASAS-DDKTVKLWNRN----GQLLQTLT--G-----------------------------HSSSVW   61 (577)
T ss_dssp             CEEEEEECTTSSCEEEEE-TTSEEEEECTT----SCEEEEEE--C-----------------------------CSSCEE
T ss_pred             cEEEEEECCCCCEEEEEe-CCCEEEEEECC----CCEEEEEe--C-----------------------------CCCCEE
Confidence            478999999999996554 57899999953    34443332  2                             112356


Q ss_pred             eEEEccCCCEEEEEe
Q 031020           84 MIQLSLDGKRLYVTN   98 (167)
Q Consensus        84 ~~~LS~DGkrLyVaN   98 (167)
                      .+++||||++|..+.
T Consensus        62 ~l~fspdg~~las~~   76 (577)
T 2ymu_A           62 GVAFSPDGQTIASAS   76 (577)
T ss_dssp             EEEECTTSSEEEEEE
T ss_pred             EEEECCCCCEEEEEe
Confidence            789999999998875

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=96.57  E-value=0.0084  Score=47.62  Aligned_cols=31  Identities=10%  Similarity=-0.004  Sum_probs=21.4

Q ss_pred             CceeEEEEec-CCCEEE-EEeCC----CCcEEEEecc
Q 031020            3 GLITDFLISL-DDRFLY-FSNWL----HGDIRQYNIE   33 (167)
Q Consensus         3 ~l~tdI~IS~-DdRfLY-VSnw~----hg~I~qyDIs   33 (167)
                      ..+.++.+|| ||+.|+ +++..    ...|+.+|+.
T Consensus       188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~  224 (388)
T 3pe7_A          188 QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINED  224 (388)
T ss_dssp             SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETT
T ss_pred             ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCC
Confidence            3467899999 999875 45432    3477777764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=96.53  E-value=0.0059  Score=53.19  Aligned_cols=62  Identities=18%  Similarity=0.124  Sum_probs=41.3

Q ss_pred             eeEEEEecCCCEEEEEeCC--------CCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCc
Q 031020            5 ITDFLISLDDRFLYFSNWL--------HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGH   76 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~--------hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~   76 (167)
                      +..+.+|||||+|..+...        .+.|+.||+... ..+   ++..+.                            
T Consensus        63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~---~l~~~~----------------------------  110 (723)
T 1xfd_A           63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG-DPQ---SLDPPE----------------------------  110 (723)
T ss_dssp             CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC-CCE---ECCCTT----------------------------
T ss_pred             cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCC-ceE---eccCCc----------------------------
Confidence            6789999999998877643        278889998752 221   222111                            


Q ss_pred             cCCCCCceEEEccCCCEEEEEe
Q 031020           77 RLRGGPQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        77 ~~~g~P~~~~LS~DGkrLyVaN   98 (167)
                      ......+.+++||||++|..+.
T Consensus       111 ~~~~~~~~~~~SPdG~~la~~~  132 (723)
T 1xfd_A          111 VSNAKLQYAGWGPKGQQLIFIF  132 (723)
T ss_dssp             CCSCCCSBCCBCSSTTCEEEEE
T ss_pred             cccccccccEECCCCCEEEEEE
Confidence            0112267889999999887766

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=96.50  E-value=0.028  Score=44.47  Aligned_cols=39  Identities=8%  Similarity=0.144  Sum_probs=31.1

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEE
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIW   45 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~   45 (167)
                      ..++.+.+|+|+++|+.++ ..|.|++||+..   .+.+..+.
T Consensus       292 ~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~---~~~~~~~~  330 (397)
T 1sq9_A          292 SWVMSLSFNDSGETLCSAG-WDGKLRFWDVKT---KERITTLN  330 (397)
T ss_dssp             SCEEEEEECSSSSEEEEEE-TTSEEEEEETTT---TEEEEEEE
T ss_pred             CcEEEEEECCCCCEEEEEe-CCCeEEEEEcCC---CceeEEEe
Confidence            3578999999999998777 578999999875   56666655

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=96.50  E-value=0.0056  Score=53.03  Aligned_cols=31  Identities=3%  Similarity=-0.089  Sum_probs=23.7

Q ss_pred             ceeEEEEecCCCEEEEEeCCC---------CcEEEEeccC
Q 031020            4 LITDFLISLDDRFLYFSNWLH---------GDIRQYNIED   34 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~h---------g~I~qyDIsd   34 (167)
                      -..++.+||||++|++++..+         ..|+.||+..
T Consensus       131 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  170 (662)
T 3azo_A          131 RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG  170 (662)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred             cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence            357899999999998887543         4677777654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=96.50  E-value=0.031  Score=44.69  Aligned_cols=61  Identities=11%  Similarity=0.048  Sum_probs=44.2

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      +-+..|.+|+|+++|..+. ..+.|+.||+..   .+....+....                               +..
T Consensus        56 ~~v~~~~~s~d~~~l~s~s-~Dg~v~iWd~~~---~~~~~~~~~~~-------------------------------~~v  100 (340)
T 1got_B           56 AKIYAMHWGTDSRLLLSAS-QDGKLIIWDSYT---TNKVHAIPLRS-------------------------------SWV  100 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEE-TTTEEEEEETTT---CCEEEEEECSS-------------------------------SCE
T ss_pred             CceEEEEECCCCCEEEEEe-CCCcEEEEECCC---CCcceEeecCC-------------------------------ccE
Confidence            3578999999999997665 578999999764   33444443222                               125


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      ..+++||||++|.++.
T Consensus       101 ~~~~~s~~~~~l~s~~  116 (340)
T 1got_B          101 MTCAYAPSGNYVACGG  116 (340)
T ss_dssp             EEEEECTTSSEEEEEE
T ss_pred             EEEEECCCCCEEEEEe
Confidence            6788999999988876

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.47  E-value=0.027  Score=45.80  Aligned_cols=61  Identities=11%  Similarity=0.049  Sum_probs=48.0

Q ss_pred             CceeEEEEecCCCEEEEEeC--CCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCC
Q 031020            3 GLITDFLISLDDRFLYFSNW--LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG   80 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw--~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g   80 (167)
                      ..++.|.+||+++.|++++-  ..+.|+.||+..   .+....+..++                                
T Consensus       260 ~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~---~~~~~~~~~~~--------------------------------  304 (401)
T 4aez_A          260 AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT---GARVNTVDAGS--------------------------------  304 (401)
T ss_dssp             SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT---CCEEEEEECSS--------------------------------
T ss_pred             ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC---CCEEEEEeCCC--------------------------------
Confidence            35788999999999999876  589999999874   44555554333                                


Q ss_pred             CCceEEEccCCCEEEEEe
Q 031020           81 GPQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        81 ~P~~~~LS~DGkrLyVaN   98 (167)
                      ....+++|++|+.|+++.
T Consensus       305 ~v~~~~~s~~~~~l~~~~  322 (401)
T 4aez_A          305 QVTSLIWSPHSKEIMSTH  322 (401)
T ss_dssp             CEEEEEECSSSSEEEEEE
T ss_pred             cEEEEEECCCCCeEEEEe
Confidence            267899999999999975

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=96.47  E-value=0.021  Score=44.42  Aligned_cols=78  Identities=5%  Similarity=0.054  Sum_probs=53.9

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      ..++.|.+|+|+++|++++ ..+.|+.||+..   .+...++....                               +..
T Consensus       203 ~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~---~~~~~~~~~~~-------------------------------~~v  247 (372)
T 1k8k_C          203 GWVHGVCFSANGSRVAWVS-HDSTVCLADADK---KMAVATLASET-------------------------------LPL  247 (372)
T ss_dssp             SCEEEEEECSSSSEEEEEE-TTTEEEEEEGGG---TTEEEEEECSS-------------------------------CCE
T ss_pred             CeEEEEEECCCCCEEEEEe-CCCEEEEEECCC---CceeEEEccCC-------------------------------CCe
Confidence            3578999999999998877 578999999875   34444443211                               126


Q ss_pred             ceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCee
Q 031020           83 QMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMA  132 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~  132 (167)
                      ..+++++||+.|.++.                 .+.+..+|++..+|.++
T Consensus       248 ~~~~~~~~~~~l~~~~-----------------d~~i~i~~~~~~~~~~~  280 (372)
T 1k8k_C          248 LAVTFITESSLVAAGH-----------------DCFPVLFTYDSAAGKLS  280 (372)
T ss_dssp             EEEEEEETTEEEEEET-----------------TSSCEEEEEETTTTEEE
T ss_pred             EEEEEecCCCEEEEEe-----------------CCeEEEEEccCcCceEE
Confidence            7889999999887763                 23455577765446443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.43  E-value=0.0081  Score=47.39  Aligned_cols=30  Identities=17%  Similarity=0.249  Sum_probs=20.8

Q ss_pred             eeEEEEecCCCEEEEE-eC-CCCcEEEEeccC
Q 031020            5 ITDFLISLDDRFLYFS-NW-LHGDIRQYNIED   34 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVS-nw-~hg~I~qyDIsd   34 (167)
                      ++++.+||||++|+++ +. +...|+++|+..
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~   69 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLET   69 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTT
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCC
Confidence            5678899999996554 43 334677777653

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=96.41  E-value=0.018  Score=46.61  Aligned_cols=64  Identities=8%  Similarity=-0.071  Sum_probs=45.0

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .-++.|.+|+|++.+++|+-..+.|++||+..   .+...++...+                             ..+..
T Consensus       132 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~-----------------------------~~~~v  179 (402)
T 2aq5_A          132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT---GAAVLTLGPDV-----------------------------HPDTI  179 (402)
T ss_dssp             SCEEEEEECSSBTTEEEEEETTSCEEEEETTT---TEEEEEECTTT-----------------------------CCSCE
T ss_pred             CeEEEEEECcCCCCEEEEEcCCCEEEEEECCC---CCccEEEecCC-----------------------------CCCce
Confidence            34788999999965555666789999999875   44444442111                             11236


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      ..+++++||++|+++.
T Consensus       180 ~~~~~~~~~~~l~~~~  195 (402)
T 2aq5_A          180 YSVDWSRDGALICTSC  195 (402)
T ss_dssp             EEEEECTTSSCEEEEE
T ss_pred             EEEEECCCCCEEEEEe
Confidence            7899999999999886

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=96.41  E-value=0.039  Score=42.75  Aligned_cols=60  Identities=18%  Similarity=0.155  Sum_probs=43.9

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -++.+.+|+|+++|..+. ..+.|+.|++.+   .++...+.  +                             ..+...
T Consensus        25 ~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~~---~~~~~~~~--~-----------------------------h~~~v~   69 (312)
T 4ery_A           25 AVSSVKFSPNGEWLASSS-ADKLIKIWGAYD---GKFEKTIS--G-----------------------------HKLGIS   69 (312)
T ss_dssp             CEEEEEECTTSSEEEEEE-TTSCEEEEETTT---CCEEEEEC--C-----------------------------CSSCEE
T ss_pred             cEEEEEECCCCCEEEEee-CCCeEEEEeCCC---cccchhhc--c-----------------------------CCCceE
Confidence            578999999999987665 578999999865   33333321  1                             112367


Q ss_pred             eEEEccCCCEEEEEe
Q 031020           84 MIQLSLDGKRLYVTN   98 (167)
Q Consensus        84 ~~~LS~DGkrLyVaN   98 (167)
                      .+++++||++|+.+.
T Consensus        70 ~~~~~~~~~~l~s~~   84 (312)
T 4ery_A           70 DVAWSSDSNLLVSAS   84 (312)
T ss_dssp             EEEECTTSSEEEEEE
T ss_pred             EEEEcCCCCEEEEEC
Confidence            789999999999886

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=96.40  E-value=0.041  Score=49.03  Aligned_cols=59  Identities=12%  Similarity=0.267  Sum_probs=39.8

Q ss_pred             eeEEEEecCCCEEEEEeCCCC----cEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCC
Q 031020            5 ITDFLISLDDRFLYFSNWLHG----DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG   80 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg----~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g   80 (167)
                      +..+.+||||++|.++.-..|    .|+++|+..   .+..... ..+                           .+   
T Consensus       127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t---g~~~~~~-~~~---------------------------~~---  172 (710)
T 2xdw_A          127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG---AKELPDV-LER---------------------------VK---  172 (710)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT---TEEEEEE-EEE---------------------------EC---
T ss_pred             EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC---CCCCccc-ccC---------------------------cc---
Confidence            568899999998865544333    799999864   3333211 111                           01   


Q ss_pred             CCceEEEccCCCEEEEEe
Q 031020           81 GPQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        81 ~P~~~~LS~DGkrLyVaN   98 (167)
                       ...++.||||++||++.
T Consensus       173 -~~~~~wspDg~~l~~~~  189 (710)
T 2xdw_A          173 -FSCMAWTHDGKGMFYNA  189 (710)
T ss_dssp             -SCCEEECTTSSEEEEEE
T ss_pred             -cceEEEEeCCCEEEEEE
Confidence             45688999999999876

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=96.38  E-value=0.043  Score=43.55  Aligned_cols=59  Identities=14%  Similarity=0.086  Sum_probs=44.5

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -+..+.+|||+++|..+. ..+.|+.||+..   .+...++...+                                ...
T Consensus       198 ~v~~~~~sp~g~~l~s~~-~dg~i~iwd~~~---~~~~~~~~~~~--------------------------------~v~  241 (319)
T 3frx_A          198 NINTLTASPDGTLIASAG-KDGEIMLWNLAA---KKAMYTLSAQD--------------------------------EVF  241 (319)
T ss_dssp             CEEEEEECTTSSEEEEEE-TTCEEEEEETTT---TEEEEEEECCS--------------------------------CEE
T ss_pred             cEEEEEEcCCCCEEEEEe-CCCeEEEEECCC---CcEEEEecCCC--------------------------------cEE
Confidence            467899999999986655 578999999875   45544443211                                156


Q ss_pred             eEEEccCCCEEEEEe
Q 031020           84 MIQLSLDGKRLYVTN   98 (167)
Q Consensus        84 ~~~LS~DGkrLyVaN   98 (167)
                      .+++||||++|.++.
T Consensus       242 ~~~~sp~~~~la~~~  256 (319)
T 3frx_A          242 SLAFSPNRYWLAAAT  256 (319)
T ss_dssp             EEEECSSSSEEEEEE
T ss_pred             EEEEcCCCCEEEEEc
Confidence            799999999998887

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=96.35  E-value=0.032  Score=44.35  Aligned_cols=31  Identities=3%  Similarity=0.153  Sum_probs=26.6

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDP   35 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp   35 (167)
                      +-++.|.+|||+++|..++  .+.|++||+...
T Consensus       215 ~~v~~l~fs~~g~~l~s~~--~~~v~iwd~~~~  245 (343)
T 3lrv_A          215 AKIKEVKFADNGYWMVVEC--DQTVVCFDLRKD  245 (343)
T ss_dssp             SCEEEEEECTTSSEEEEEE--SSBEEEEETTSS
T ss_pred             CCEEEEEEeCCCCEEEEEe--CCeEEEEEcCCC
Confidence            4578999999999999888  459999998763

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=96.34  E-value=0.03  Score=44.58  Aligned_cols=64  Identities=9%  Similarity=0.140  Sum_probs=46.1

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCC-CeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKN-PVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~-pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      ..+..|.+|++++++++++-..+.|+.||+..... .++.....-                                .+.
T Consensus       205 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--------------------------------~~~  252 (383)
T 3ei3_B          205 AKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPH--------------------------------EKP  252 (383)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEEC--------------------------------SSC
T ss_pred             CcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecC--------------------------------CCc
Confidence            45789999999995556666788999999986332 233333321                                123


Q ss_pred             CceEEEcc-CCCEEEEEe
Q 031020           82 PQMIQLSL-DGKRLYVTN   98 (167)
Q Consensus        82 P~~~~LS~-DGkrLyVaN   98 (167)
                      ...+++|+ ||++|+++.
T Consensus       253 v~~~~~s~~~~~~l~~~~  270 (383)
T 3ei3_B          253 VNAAYFNPTDSTKLLTTD  270 (383)
T ss_dssp             EEEEEECTTTSCEEEEEE
T ss_pred             eEEEEEcCCCCCEEEEEc
Confidence            77899999 999999887

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=96.30  E-value=0.016  Score=47.60  Aligned_cols=61  Identities=13%  Similarity=-0.082  Sum_probs=44.2

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .++.|.+|||++.+.+|+-..+.|++||+..   .++.   .+-|                             ..+.-.
T Consensus       259 ~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~---~~~~---~~~~-----------------------------H~~~V~  303 (344)
T 4gqb_B          259 CVTGLVFSPHSVPFLASLSEDCSLAVLDSSL---SELF---RSQA-----------------------------HRDFVR  303 (344)
T ss_dssp             CEEEEEECSSSSCCEEEEETTSCEEEECTTC---CEEE---EECC-----------------------------CSSCEE
T ss_pred             CEEEEEEccCCCeEEEEEeCCCeEEEEECCC---CcEE---EEcC-----------------------------CCCCEE
Confidence            4788999999966556666789999999764   3332   1222                             123367


Q ss_pred             eEEEccCCCEEEEEeC
Q 031020           84 MIQLSLDGKRLYVTNS   99 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNs   99 (167)
                      .+++||||++|+++-+
T Consensus       304 ~v~~sp~~~~llas~s  319 (344)
T 4gqb_B          304 DATWSPLNHSLLTTVG  319 (344)
T ss_dssp             EEEECSSSTTEEEEEE
T ss_pred             EEEEeCCCCeEEEEEc
Confidence            8999999999988874

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=96.28  E-value=0.019  Score=50.17  Aligned_cols=56  Identities=11%  Similarity=0.101  Sum_probs=38.1

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      ++.+.+||| ++|.++.  .+.|++||+..   .++.. +..+.                               +....
T Consensus        84 v~~~~~spd-~~~~~~~--~~~i~~~d~~~---~~~~~-l~~~~-------------------------------~~~~~  125 (706)
T 2z3z_A           84 SFRTLDAGR-GLVVLFT--QGGLVGFDMLA---RKVTY-LFDTN-------------------------------EETAS  125 (706)
T ss_dssp             CEEEEETTT-TEEEEEE--TTEEEEEETTT---TEEEE-EECCT-------------------------------TCCTT
T ss_pred             ceeEEECCC-CeEEEEE--CCEEEEEECCC---CceEE-ccCCc-------------------------------ccccC
Confidence            788999999 5555553  38999999864   33321 11111                               12677


Q ss_pred             EEEccCCCEEEEEe
Q 031020           85 IQLSLDGKRLYVTN   98 (167)
Q Consensus        85 ~~LS~DGkrLyVaN   98 (167)
                      +++||||++|+.+.
T Consensus       126 ~~~SpdG~~la~~~  139 (706)
T 2z3z_A          126 LDFSPVGDRVAYVR  139 (706)
T ss_dssp             CEECTTSSEEEEEE
T ss_pred             CcCCCCCCEEEEEE
Confidence            89999999998764

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.25  E-value=0.022  Score=49.24  Aligned_cols=28  Identities=7%  Similarity=-0.027  Sum_probs=25.9

Q ss_pred             eEEEEecCCCEEEEEeCCCCcEEEEecc
Q 031020            6 TDFLISLDDRFLYFSNWLHGDIRQYNIE   33 (167)
Q Consensus         6 tdI~IS~DdRfLYVSnw~hg~I~qyDIs   33 (167)
                      ..|++++|+++|||+.+.++.|++++.+
T Consensus       276 ~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          276 FHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             ccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            4699999999999999999999999875

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=96.25  E-value=0.024  Score=52.99  Aligned_cols=61  Identities=11%  Similarity=-0.009  Sum_probs=42.8

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .-+..+.+||||++|++++. .+.|+.||+..   .++.... .+.                              .+..
T Consensus       379 ~~~~~~~~SpDG~~la~~~~-~~~v~~~d~~t---g~~~~~~-~~~------------------------------~~~v  423 (1045)
T 1k32_A          379 GNVFAMGVDRNGKFAVVAND-RFEIMTVDLET---GKPTVIE-RSR------------------------------EAMI  423 (1045)
T ss_dssp             CSEEEEEECTTSSEEEEEET-TSEEEEEETTT---CCEEEEE-ECS------------------------------SSCC
T ss_pred             cceeeeEECCCCCEEEEECC-CCeEEEEECCC---CceEEec-cCC------------------------------CCCc
Confidence            34678999999999987775 57999999864   2332211 121                              1124


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      ..+++||||++|.++.
T Consensus       424 ~~~~~SpDG~~la~~~  439 (1045)
T 1k32_A          424 TDFTISDNSRFIAYGF  439 (1045)
T ss_dssp             CCEEECTTSCEEEEEE
T ss_pred             cceEECCCCCeEEEEe
Confidence            7899999999998776

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=96.24  E-value=0.03  Score=43.82  Aligned_cols=78  Identities=12%  Similarity=0.127  Sum_probs=47.9

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      ..++.|.+++++++|++++-..|.|+.||+.....+...  +...              ...........  -....+..
T Consensus       187 ~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~--~~~~--------------~~~~~~~~~~~--~~~~~~~v  248 (408)
T 4a11_B          187 QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLIT--LDQH--------------NGKKSQAVESA--NTAHNGKV  248 (408)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEE--CCTT--------------TTCSCCCTTTS--SCSCSSCE
T ss_pred             CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccc--cccc--------------ccccceeeccc--cccccCce
Confidence            457899999999987777777899999998763321111  1000              00000000000  01223457


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      ..+++++||++|+++.
T Consensus       249 ~~~~~~~~~~~l~~~~  264 (408)
T 4a11_B          249 NGLCFTSDGLHLLTVG  264 (408)
T ss_dssp             EEEEECTTSSEEEEEE
T ss_pred             eEEEEcCCCCEEEEec
Confidence            8899999999999987

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=96.23  E-value=0.086  Score=39.60  Aligned_cols=64  Identities=11%  Similarity=0.174  Sum_probs=44.5

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCC-eEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNP-VLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~p-klvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      .-++.|.+|+|+++|..++ ..|.|++||+...... ++...+.  +                             ..+.
T Consensus        12 ~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~--~-----------------------------~~~~   59 (351)
T 3f3f_A           12 DLVHDVVYDFYGRHVATCS-SDQHIKVFKLDKDTSNWELSDSWR--A-----------------------------HDSS   59 (351)
T ss_dssp             SCEEEEEECSSSSEEEEEE-TTSEEEEEEECSSSCCEEEEEEEE--C-----------------------------CSSC
T ss_pred             cceeEEEEcCCCCEEEEee-CCCeEEEEECCCCCCcceecceec--c-----------------------------CCCc
Confidence            4588999999999997776 5789999999853322 3333332  1                             1122


Q ss_pred             CceEEEcc--CCCEEEEEe
Q 031020           82 PQMIQLSL--DGKRLYVTN   98 (167)
Q Consensus        82 P~~~~LS~--DGkrLyVaN   98 (167)
                      ...+++++  ||++|+++.
T Consensus        60 v~~~~~~~~~d~~~l~s~~   78 (351)
T 3f3f_A           60 IVAIDWASPEYGRIIASAS   78 (351)
T ss_dssp             EEEEEECCGGGCSEEEEEE
T ss_pred             EEEEEEcCCCCCCEEEEEc
Confidence            56788888  688888876

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=96.22  E-value=0.014  Score=47.45  Aligned_cols=63  Identities=14%  Similarity=0.109  Sum_probs=37.8

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -++++++|+|+++|-.|  ..|.|++||+..... ..+.+....|                             ..+.-.
T Consensus        96 ~V~~~~~s~d~~~l~~s--~dg~v~lWd~~~~~~-~~~~~~~~~~-----------------------------h~~~V~  143 (357)
T 4g56_B           96 GVTDVAWVSEKGILVAS--DSGAVELWEILEKES-LLVNKFAKYE-----------------------------HDDIVK  143 (357)
T ss_dssp             CEEEEEEETTTEEEEEE--TTSCEEEC---------CCCCEEECC-----------------------------CSSCEE
T ss_pred             CEEEEEEcCCCCEEEEE--CCCEEEEeeccccce-eEEEeeccCC-----------------------------CCCCEE
Confidence            47899999999877544  478999999875321 1111111111                             122357


Q ss_pred             eEEEccCCCEEEEEe
Q 031020           84 MIQLSLDGKRLYVTN   98 (167)
Q Consensus        84 ~~~LS~DGkrLyVaN   98 (167)
                      .+++||||++|+.+.
T Consensus       144 ~v~~spdg~~l~sgs  158 (357)
T 4g56_B          144 TLSVFSDGTQAVSGG  158 (357)
T ss_dssp             EEEECSSSSEEEEEE
T ss_pred             EEEECCCCCEEEEEe
Confidence            789999999998875

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=96.21  E-value=0.053  Score=44.31  Aligned_cols=60  Identities=20%  Similarity=0.210  Sum_probs=43.3

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+..+.+|+|+++|..+. ..+.|++||+..   .+.+..+.  |                             ..+.-.
T Consensus       125 ~v~~v~~s~dg~~l~s~~-~d~~i~iwd~~~---~~~~~~~~--~-----------------------------h~~~v~  169 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGA-EDRLIRIWDIEN---RKIVMILQ--G-----------------------------HEQDIY  169 (393)
T ss_dssp             BEEEEEECTTSSEEEEEE-TTSCEEEEETTT---TEEEEEEC--C-----------------------------CSSCEE
T ss_pred             eEEEEEECCCCCEEEEEc-CCCeEEEEECCC---CcEEEEEc--c-----------------------------CCCCEE
Confidence            378999999999997666 578999999874   34433221  2                             012256


Q ss_pred             eEEEccCCCEEEEEe
Q 031020           84 MIQLSLDGKRLYVTN   98 (167)
Q Consensus        84 ~~~LS~DGkrLyVaN   98 (167)
                      .+++++||++|+.+.
T Consensus       170 ~~~~~p~~~~l~s~s  184 (393)
T 1erj_A          170 SLDYFPSGDKLVSGS  184 (393)
T ss_dssp             EEEECTTSSEEEEEE
T ss_pred             EEEEcCCCCEEEEec
Confidence            788999999998775

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.20  E-value=0.038  Score=48.44  Aligned_cols=62  Identities=11%  Similarity=0.100  Sum_probs=47.1

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .-++.|.+|||+++|.++. ..|.|.+||+..   .+.+.++...                               .+..
T Consensus        14 ~~v~~i~~sp~~~~la~~~-~~g~v~iwd~~~---~~~~~~~~~~-------------------------------~~~v   58 (814)
T 3mkq_A           14 DRVKGIDFHPTEPWVLTTL-YSGRVEIWNYET---QVEVRSIQVT-------------------------------ETPV   58 (814)
T ss_dssp             SCEEEEEECSSSSEEEEEE-TTSEEEEEETTT---TEEEEEEECC-------------------------------SSCE
T ss_pred             CceEEEEECCCCCEEEEEe-CCCEEEEEECCC---CceEEEEecC-------------------------------CCcE
Confidence            4578999999999998776 578999999764   5555444411                               1226


Q ss_pred             ceEEEccCCCEEEEEeC
Q 031020           83 QMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNs   99 (167)
                      +.+++|+||++|.++.+
T Consensus        59 ~~~~~s~~~~~l~~~~~   75 (814)
T 3mkq_A           59 RAGKFIARKNWIIVGSD   75 (814)
T ss_dssp             EEEEEEGGGTEEEEEET
T ss_pred             EEEEEeCCCCEEEEEeC
Confidence            78899999999999873

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=96.18  E-value=0.036  Score=42.73  Aligned_cols=64  Identities=16%  Similarity=0.185  Sum_probs=45.0

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      ..++.|.+|+|+++|+++. ..+.|++||+.........-.+.  +                             ..+..
T Consensus        12 ~~v~~~~~s~~~~~l~~~~-~d~~v~iw~~~~~~~~~~~~~~~--~-----------------------------~~~~v   59 (342)
T 1yfq_A           12 DYISDIKIIPSKSLLLITS-WDGSLTVYKFDIQAKNVDLLQSL--R-----------------------------YKHPL   59 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEE-TTSEEEEEEEETTTTEEEEEEEE--E-----------------------------CSSCE
T ss_pred             CcEEEEEEcCCCCEEEEEc-CCCeEEEEEeCCCCccccceeee--e-----------------------------cCCce
Confidence            4588999999999998776 57899999998633211221221  1                             11226


Q ss_pred             ceEEEccCCC-EEEEEe
Q 031020           83 QMIQLSLDGK-RLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGk-rLyVaN   98 (167)
                      ..++++++|+ +|+++.
T Consensus        60 ~~~~~~~~~~~~l~~~~   76 (342)
T 1yfq_A           60 LCCNFIDNTDLQIYVGT   76 (342)
T ss_dssp             EEEEEEESSSEEEEEEE
T ss_pred             EEEEECCCCCcEEEEEc
Confidence            7889999999 888887

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=96.17  E-value=0.047  Score=42.87  Aligned_cols=59  Identities=17%  Similarity=0.179  Sum_probs=43.8

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -++.|.+|+|+++|+++.. .|.|++||.+    .+...++...                               .+...
T Consensus       110 ~v~~~~~s~~~~~l~~~~~-dg~i~i~~~~----~~~~~~~~~~-------------------------------~~~v~  153 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGVE-NGELRLWNKT----GALLNVLNFH-------------------------------RAPIV  153 (425)
T ss_dssp             CEEEEEECTTSSEEEEEET-TSCEEEEETT----SCEEEEECCC-------------------------------CSCEE
T ss_pred             ceEEEEEcCCCCEEEEEeC-CCeEEEEeCC----CCeeeeccCC-------------------------------CccEE
Confidence            6889999999999988775 6899999932    3344333211                               12367


Q ss_pred             eEEEccCCCEEEEEe
Q 031020           84 MIQLSLDGKRLYVTN   98 (167)
Q Consensus        84 ~~~LS~DGkrLyVaN   98 (167)
                      .++++++|++|+++.
T Consensus       154 ~~~~~~~~~~l~~~~  168 (425)
T 1r5m_A          154 SVKWNKDGTHIISMD  168 (425)
T ss_dssp             EEEECTTSSEEEEEE
T ss_pred             EEEECCCCCEEEEEe
Confidence            899999999999887

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=96.17  E-value=0.037  Score=44.26  Aligned_cols=61  Identities=15%  Similarity=0.158  Sum_probs=44.5

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .-++.+.+|+|+++|+.+. ..+.|+.||+....   .+..+.  +                             ..+..
T Consensus       140 ~~v~~~~~~~~~~~l~s~s-~d~~i~iwd~~~~~---~~~~~~--~-----------------------------h~~~v  184 (420)
T 3vl1_A          140 SEITKLKFFPSGEALISSS-QDMQLKIWSVKDGS---NPRTLI--G-----------------------------HRATV  184 (420)
T ss_dssp             SCEEEEEECTTSSEEEEEE-TTSEEEEEETTTCC---CCEEEE--C-----------------------------CSSCE
T ss_pred             CccEEEEECCCCCEEEEEe-CCCeEEEEeCCCCc---CceEEc--C-----------------------------CCCcE
Confidence            4578999999999987766 47899999987532   222222  1                             11236


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      ..+++++||++|+.+.
T Consensus       185 ~~~~~~~~~~~l~s~~  200 (420)
T 3vl1_A          185 TDIAIIDRGRNVLSAS  200 (420)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             EEEEEcCCCCEEEEEc
Confidence            7889999999999877

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=96.16  E-value=0.034  Score=44.58  Aligned_cols=59  Identities=20%  Similarity=0.164  Sum_probs=42.0

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      +..+.+|||+++|..+. ..+.|+.||+..   .+..-.+...+                           ..    ...
T Consensus       125 ~~~~~~spdg~~l~~g~-~dg~v~i~~~~~---~~~~~~~~~~~---------------------------~~----v~~  169 (321)
T 3ow8_A          125 AWTLAFSPDSQYLATGT-HVGKVNIFGVES---GKKEYSLDTRG---------------------------KF----ILS  169 (321)
T ss_dssp             CCCEEECTTSSEEEEEC-TTSEEEEEETTT---CSEEEEEECSS---------------------------SC----EEE
T ss_pred             EEEEEECCCCCEEEEEc-CCCcEEEEEcCC---CceeEEecCCC---------------------------ce----EEE
Confidence            45689999999997665 578999999875   23332332222                           11    567


Q ss_pred             EEEccCCCEEEEEe
Q 031020           85 IQLSLDGKRLYVTN   98 (167)
Q Consensus        85 ~~LS~DGkrLyVaN   98 (167)
                      +++||||++|.++.
T Consensus       170 ~~~spdg~~lasg~  183 (321)
T 3ow8_A          170 IAYSPDGKYLASGA  183 (321)
T ss_dssp             EEECTTSSEEEEEE
T ss_pred             EEECCCCCEEEEEc
Confidence            89999999999886

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=96.16  E-value=0.036  Score=42.95  Aligned_cols=66  Identities=12%  Similarity=0.108  Sum_probs=44.4

Q ss_pred             CceeEEEEecC---CCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCC
Q 031020            3 GLITDFLISLD---DRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR   79 (167)
Q Consensus         3 ~l~tdI~IS~D---dRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~   79 (167)
                      ..++.|.+|||   +++|+.++ ..|.|+.||+.....+... .+....                            ...
T Consensus       207 ~~v~~~~~sp~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~-~~~~~~----------------------------~~~  256 (379)
T 3jrp_A          207 DWVRDVAWSPTVLLRSYLASVS-QDRTCIIWTQDNEQGPWKK-TLLKEE----------------------------KFP  256 (379)
T ss_dssp             SCEEEEEECCCCSSSEEEEEEE-TTSCEEEEEESSTTSCCEE-EESSSS----------------------------CCS
T ss_pred             CcEeEEEECCCCCCCCeEEEEe-CCCEEEEEeCCCCCcccee-eeeccc----------------------------cCC
Confidence            34789999999   77776655 5789999998863322221 111111                            122


Q ss_pred             CCCceEEEccCCCEEEEEe
Q 031020           80 GGPQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        80 g~P~~~~LS~DGkrLyVaN   98 (167)
                      +....+++|+||++|+++.
T Consensus       257 ~~v~~~~~s~~g~~l~~~~  275 (379)
T 3jrp_A          257 DVLWRASWSLSGNVLALSG  275 (379)
T ss_dssp             SCEEEEEECSSSCCEEEEE
T ss_pred             CcEEEEEEcCCCCEEEEec
Confidence            3367789999999999987

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=96.14  E-value=0.12  Score=41.06  Aligned_cols=92  Identities=14%  Similarity=0.096  Sum_probs=54.2

Q ss_pred             CceeEEEEec-CCCEEEEEeCCCCcEEEEeccCCCCCe-EEEEEEe---------------Ccee------------ecC
Q 031020            3 GLITDFLISL-DDRFLYFSNWLHGDIRQYNIEDPKNPV-LTGQIWV---------------GGLF------------RKG   53 (167)
Q Consensus         3 ~l~tdI~IS~-DdRfLYVSnw~hg~I~qyDIsdp~~pk-lvg~v~~---------------GG~~------------~~~   53 (167)
                      ..++.|.+|+ |+++|++++ ..+.|++||+.....++ +.+....               +..+            ..+
T Consensus       251 ~~v~~~~~s~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d  329 (383)
T 3ei3_B          251 KPVNAAYFNPTDSTKLLTTD-QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDK  329 (383)
T ss_dssp             SCEEEEEECTTTSCEEEEEE-SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCC
T ss_pred             CceEEEEEcCCCCCEEEEEc-CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcccccCCC
Confidence            4578999999 999998776 47899999998644322 2211000               0000            023


Q ss_pred             CceeEeeCCCCCCCCCCccccCccCCCCCceEEEccCCCEEEEEe
Q 031020           54 SPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        54 ~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS~DGkrLyVaN   98 (167)
                      +.|+|-.-.....   ....++....+....+++|+||++|..+.
T Consensus       330 ~~i~iwd~~~~~~---~~~l~~~~~~~~~~~~~~s~~g~~l~s~s  371 (383)
T 3ei3_B          330 RTIDIYDANSGGL---VHQLRDPNAAGIISLNKFSPTGDVLASGM  371 (383)
T ss_dssp             CCEEEEETTTCCE---EEEECBTTBCSCCCEEEECTTSSEEEEEE
T ss_pred             CeEEEEecCCCce---eeeecCCCCCceEEEEEEecCccEEEEec
Confidence            5566655332221   22233333344466679999999997774

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.12  E-value=0.034  Score=48.80  Aligned_cols=67  Identities=15%  Similarity=0.127  Sum_probs=50.4

Q ss_pred             CCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCC--CCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCC
Q 031020            2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPK--NPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR   79 (167)
Q Consensus         2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~--~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~   79 (167)
                      |+-+-.|.+.+...+|||+.+..| |+.|+.....  .++++..+..|                             ++.
T Consensus       179 gsq~EgcvvDd~~g~Lyv~eEd~G-Iw~~da~p~~~~~~~~v~~~~~g-----------------------------~l~  228 (355)
T 3amr_A          179 NSQTEGMAADDEYGRLYIAEEDEA-IWKFSAEPDGGSNGTVIDRADGR-----------------------------HLT  228 (355)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTTE-EEEEECSTTSCSCCEEEEEBSSS-----------------------------SBC
T ss_pred             CCCcceEEEcCCCCeEEEecccce-EEEEeCCcCCCCCceEEEEecCC-----------------------------ccc
Confidence            455678899999999999999977 9999965221  36677555432                             234


Q ss_pred             CCCceEEE--ccCCC-EEEEEe
Q 031020           80 GGPQMIQL--SLDGK-RLYVTN   98 (167)
Q Consensus        80 g~P~~~~L--S~DGk-rLyVaN   98 (167)
                      ..|+-|+|  ..+|+ +|+|++
T Consensus       229 aDvEGLai~~~~~g~gyLivSs  250 (355)
T 3amr_A          229 RDIEGLTIYYAADGKGYLMASS  250 (355)
T ss_dssp             SCEEEEEEEECGGGCEEEEEEE
T ss_pred             cCcceEEEEecCCCCEEEEEEc
Confidence            44899998  78888 899999

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=96.12  E-value=0.036  Score=46.25  Aligned_cols=63  Identities=10%  Similarity=0.044  Sum_probs=45.6

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCC-eEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNP-VLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~p-klvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      +-++.+.+|||+++|.+++  .+.|++||+.+...+ +....+.  |                             ..+.
T Consensus        19 ~~v~~~~~spdg~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~--~-----------------------------h~~~   65 (615)
T 1pgu_A           19 NFTTHLSYDPTTNAIAYPC--GKSAFVRCLDDGDSKVPPVVQFT--G-----------------------------HGSS   65 (615)
T ss_dssp             TCCCCCEEETTTTEEEEEE--TTEEEEEECCSSCCSSCSEEEEC--T-----------------------------TTTS
T ss_pred             CceeEEEECCCCCEEEEec--CCeEEEEECCCCCCccccceEEe--c-----------------------------CCCc
Confidence            4578899999999999988  679999998853222 3333221  1                             1123


Q ss_pred             -CceEEEcc--CCCEEEEEe
Q 031020           82 -PQMIQLSL--DGKRLYVTN   98 (167)
Q Consensus        82 -P~~~~LS~--DGkrLyVaN   98 (167)
                       ...+++||  ||++|+++.
T Consensus        66 ~v~~~~~sp~~~~~~l~s~~   85 (615)
T 1pgu_A           66 VVTTVKFSPIKGSQYLCSGD   85 (615)
T ss_dssp             CEEEEEECSSTTCCEEEEEE
T ss_pred             eEEEEEECcCCCCCEEEEec
Confidence             57899999  999999887

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=96.12  E-value=0.0072  Score=53.03  Aligned_cols=59  Identities=17%  Similarity=0.237  Sum_probs=39.7

Q ss_pred             eeEEEEecCCCEEEEEeC--------CCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCc
Q 031020            5 ITDFLISLDDRFLYFSNW--------LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGH   76 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw--------~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~   76 (167)
                      +..+.+||||++|.++..        ..+.|+.||+..   .++...                                +
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~---g~~~~~--------------------------------~  106 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN---GEFVRG--------------------------------N  106 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT---TEECCS--------------------------------S
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC---Cccccc--------------------------------e
Confidence            568999999999876653        247899998764   222000                                0


Q ss_pred             cCCCCCceEEEccCCCEEEEEe
Q 031020           77 RLRGGPQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        77 ~~~g~P~~~~LS~DGkrLyVaN   98 (167)
                      ++.+..+.+++||||++|..+.
T Consensus       107 ~l~~~~~~~~~SPDG~~la~~~  128 (719)
T 1z68_A          107 ELPRPIQYLCWSPVGSKLAYVY  128 (719)
T ss_dssp             CCCSSBCCEEECSSTTCEEEEE
T ss_pred             ecCcccccceECCCCCEEEEEE
Confidence            1112367899999999988764

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=96.07  E-value=0.1  Score=45.52  Aligned_cols=86  Identities=17%  Similarity=0.140  Sum_probs=51.9

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCcee-----------------ecCCceeEeeCCCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLF-----------------RKGSPVVAVTDDGQPY   66 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~-----------------~~~~~v~v~~~~~~~~   66 (167)
                      -+..+.+|||+++|..+. ..+.|+.||+..   .+...++..+..+                 ..++.+++..-+... 
T Consensus       241 ~V~~v~~spdg~~l~s~s-~D~~v~lWd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~-  315 (611)
T 1nr0_A          241 SVFGLTWSPDGTKIASAS-ADKTIKIWNVAT---LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGS-  315 (611)
T ss_dssp             CEEEEEECTTSSEEEEEE-TTSEEEEEETTT---TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTE-
T ss_pred             CEEEEEECCCCCEEEEEe-CCCeEEEEeCCC---CceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCC-
Confidence            478899999999986554 678999999864   5555555433211                 112333333211110 


Q ss_pred             CCCCccccCccCCCCCceEEEccCCCEEEEEe
Q 031020           67 QSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        67 ~p~~~~~~g~~~~g~P~~~~LS~DGkrLyVaN   98 (167)
                        .....+|.  .+.-..+++||||++|+.+.
T Consensus       316 --~~~~~~gh--~~~v~~l~~spdg~~l~s~s  343 (611)
T 1nr0_A          316 --IDQVRYGH--NKAITALSSSADGKTLFSAD  343 (611)
T ss_dssp             --EEEEECCC--SSCEEEEEECTTSSEEEEEE
T ss_pred             --cceEEcCC--CCCEEEEEEeCCCCEEEEEe
Confidence              01122232  24467889999999999886

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=96.06  E-value=0.083  Score=40.66  Aligned_cols=64  Identities=16%  Similarity=0.152  Sum_probs=45.1

Q ss_pred             CceeEEEEec-CCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            3 GLITDFLISL-DDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         3 ~l~tdI~IS~-DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      .-++.|.+|+ |+++|+.++ ..+.|+.||+..   .+....+..-.                            ...+.
T Consensus       116 ~~i~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~---~~~~~~~~~~~----------------------------~~~~~  163 (366)
T 3k26_A          116 NAINELKFHPRDPNLLLSVS-KDHALRLWNIQT---DTLVAIFGGVE----------------------------GHRDE  163 (366)
T ss_dssp             SCEEEEEECSSCTTEEEEEE-TTSCEEEEETTT---TEEEEEECSTT----------------------------SCSSC
T ss_pred             CcEEEEEECCCCCCEEEEEe-CCCeEEEEEeec---CeEEEEecccc----------------------------cccCc
Confidence            4578999999 888886666 478999999875   34443331000                            11234


Q ss_pred             CceEEEccCCCEEEEEe
Q 031020           82 PQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaN   98 (167)
                      ...++++++|++|+++.
T Consensus       164 v~~~~~~~~~~~l~~~~  180 (366)
T 3k26_A          164 VLSADYDLLGEKIMSCG  180 (366)
T ss_dssp             EEEEEECTTSSEEEEEE
T ss_pred             eeEEEECCCCCEEEEec
Confidence            78899999999999887

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=96.05  E-value=0.026  Score=44.91  Aligned_cols=62  Identities=13%  Similarity=0.172  Sum_probs=43.6

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -++.+.+|||+++|.+++ ..+.|+.||+......  ..++. ++                             ..+...
T Consensus       172 ~i~~~~~~pdg~~lasg~-~dg~i~iwd~~~~~~~--~~~~~-~~-----------------------------h~~~v~  218 (343)
T 3lrv_A          172 EYSSGVLHKDSLLLALYS-PDGILDVYNLSSPDQA--SSRFP-VD-----------------------------EEAKIK  218 (343)
T ss_dssp             CCCEEEECTTSCEEEEEC-TTSCEEEEESSCTTSC--CEECC-CC-----------------------------TTSCEE
T ss_pred             ceEEEEECCCCCEEEEEc-CCCEEEEEECCCCCCC--ccEEe-cc-----------------------------CCCCEE
Confidence            367899999999987665 5789999998763222  01121 11                             112367


Q ss_pred             eEEEccCCCEEEEEe
Q 031020           84 MIQLSLDGKRLYVTN   98 (167)
Q Consensus        84 ~~~LS~DGkrLyVaN   98 (167)
                      .+++||||++|.++.
T Consensus       219 ~l~fs~~g~~l~s~~  233 (343)
T 3lrv_A          219 EVKFADNGYWMVVEC  233 (343)
T ss_dssp             EEEECTTSSEEEEEE
T ss_pred             EEEEeCCCCEEEEEe
Confidence            899999999999886

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=96.03  E-value=0.065  Score=42.04  Aligned_cols=60  Identities=22%  Similarity=0.186  Sum_probs=43.9

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      ..++.+.+|+|+ +| +++-..+.|+.||+..   .+....+....                               +..
T Consensus       290 ~~i~~~~~~~~~-~l-~~~~~d~~i~i~d~~~---~~~~~~~~~~~-------------------------------~~i  333 (425)
T 1r5m_A          290 QSIVSASWVGDD-KV-ISCSMDGSVRLWSLKQ---NTLLALSIVDG-------------------------------VPI  333 (425)
T ss_dssp             SCEEEEEEETTT-EE-EEEETTSEEEEEETTT---TEEEEEEECTT-------------------------------CCE
T ss_pred             ccEEEEEECCCC-EE-EEEeCCCcEEEEECCC---CcEeEecccCC-------------------------------ccE
Confidence            457899999999 44 4555689999999864   45554443211                               127


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      ..+++|+||++|+++.
T Consensus       334 ~~~~~s~~~~~l~~~~  349 (425)
T 1r5m_A          334 FAGRISQDGQKYAVAF  349 (425)
T ss_dssp             EEEEECTTSSEEEEEE
T ss_pred             EEEEEcCCCCEEEEEE
Confidence            7899999999999988

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=96.03  E-value=0.039  Score=44.38  Aligned_cols=29  Identities=14%  Similarity=0.366  Sum_probs=25.9

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      -++.|.+|+|+++|..+..  +.|++||+..
T Consensus       287 ~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~  315 (447)
T 3dw8_B          287 SISDVKFSHSGRYMMTRDY--LSVKVWDLNM  315 (447)
T ss_dssp             CEEEEEECTTSSEEEEEES--SEEEEEETTC
T ss_pred             eEEEEEECCCCCEEEEeeC--CeEEEEeCCC
Confidence            6889999999999988776  9999999874

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=96.02  E-value=0.079  Score=41.00  Aligned_cols=60  Identities=8%  Similarity=0.002  Sum_probs=42.6

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -+++|.+|+|+++|+.++. .+.|++||+..   .+.+..+....                               +.-.
T Consensus        67 ~v~~~~~~~~~~~l~s~~~-d~~i~vwd~~~---~~~~~~~~~~~-------------------------------~~v~  111 (312)
T 4ery_A           67 GISDVAWSSDSNLLVSASD-DKTLKIWDVSS---GKCLKTLKGHS-------------------------------NYVF  111 (312)
T ss_dssp             CEEEEEECTTSSEEEEEET-TSEEEEEETTT---CCEEEEEECCS-------------------------------SCEE
T ss_pred             ceEEEEEcCCCCEEEEECC-CCEEEEEECCC---CcEEEEEcCCC-------------------------------CCEE
Confidence            4788999999999987764 78999999875   34443332111                               1145


Q ss_pred             eEEEccCCCEEEEEe
Q 031020           84 MIQLSLDGKRLYVTN   98 (167)
Q Consensus        84 ~~~LS~DGkrLyVaN   98 (167)
                      .++++++|++|+.+.
T Consensus       112 ~~~~~~~~~~l~s~~  126 (312)
T 4ery_A          112 CCNFNPQSNLIVSGS  126 (312)
T ss_dssp             EEEECSSSSEEEEEE
T ss_pred             EEEEcCCCCEEEEEe
Confidence            677899999888776

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=95.98  E-value=0.13  Score=41.07  Aligned_cols=63  Identities=10%  Similarity=0.027  Sum_probs=44.0

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .-++.|.+|||+++|..+. ..+.|+.||+..   .+........+                             ...+.
T Consensus       227 ~~v~~v~~~p~~~~l~s~s-~d~~v~iwd~~~---~~~~~~~~~~~-----------------------------~~~~v  273 (340)
T 1got_B          227 SDINAICFFPNGNAFATGS-DDATCRLFDLRA---DQELMTYSHDN-----------------------------IICGI  273 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEE-TTSCEEEEETTT---TEEEEEECCTT-----------------------------CCSCE
T ss_pred             CCEEEEEEcCCCCEEEEEc-CCCcEEEEECCC---CcEEEEEccCC-----------------------------cccce
Confidence            3578899999999987665 578999999874   33322221111                             11235


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      ..+++||||++|.++.
T Consensus       274 ~~~~~s~~g~~l~~g~  289 (340)
T 1got_B          274 TSVSFSKSGRLLLAGY  289 (340)
T ss_dssp             EEEEECTTSSEEEEEE
T ss_pred             EEEEECCCCCEEEEEC
Confidence            6789999999999987

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=95.97  E-value=0.12  Score=40.45  Aligned_cols=31  Identities=10%  Similarity=0.194  Sum_probs=25.9

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      ..+..|.+|||+++|..+. ..+.|+.||+..
T Consensus        98 ~~v~~~~~~~~~~~l~sgs-~D~~v~lWd~~~  128 (304)
T 2ynn_A           98 DYIRSIAVHPTKPYVLSGS-DDLTVKLWNWEN  128 (304)
T ss_dssp             SCEEEEEECSSSSEEEEEE-TTSCEEEEEGGG
T ss_pred             CcEEEEEEcCCCCEEEEEC-CCCeEEEEECCC
Confidence            4578999999999986555 578999999875

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.96  E-value=0.053  Score=42.69  Aligned_cols=18  Identities=6%  Similarity=0.073  Sum_probs=14.6

Q ss_pred             CceEEEccCCCEEEEEeC
Q 031020           82 PQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaNs   99 (167)
                      ...+++|+||++|+++.+
T Consensus       353 ~~~~~~s~dg~~l~~~s~  370 (396)
T 3c5m_A          353 HPHPSFTPNDDGVLFTSD  370 (396)
T ss_dssp             CCCCEECTTSSEEEEEEC
T ss_pred             CCCceEccCCCeEEEEec
Confidence            455689999999998873

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=95.94  E-value=0.028  Score=43.32  Aligned_cols=64  Identities=17%  Similarity=0.186  Sum_probs=43.9

Q ss_pred             eeEEEEecC--CCEEEEEeCCCCcEEEEeccCCCCCe-EEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            5 ITDFLISLD--DRFLYFSNWLHGDIRQYNIEDPKNPV-LTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         5 ~tdI~IS~D--dRfLYVSnw~hg~I~qyDIsdp~~pk-lvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      ++.|.+|+|  +++|++++ ..|.|++||+......+ ....+.  +                           ....+.
T Consensus       288 v~~~~~s~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~--~---------------------------~~~~~~  337 (366)
T 3k26_A          288 IWYMRFSMDFWQKMLALGN-QVGKLYVWDLEVEDPHKAKCTTLT--H---------------------------HKCGAA  337 (366)
T ss_dssp             SSCCCCEECTTSSEEEEEC-TTSCEEEEECCSSSGGGCEEEEEC--C---------------------------TTCCSC
T ss_pred             EEEEEEcCCCCCcEEEEEe-cCCcEEEEECCCCCCccccceEEc--c---------------------------cccCCc
Confidence            567889999  99998775 57899999988532111 222221  1                           011233


Q ss_pred             CceEEEccCCCEEEEEe
Q 031020           82 PQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaN   98 (167)
                      ...+++|+||++|+++.
T Consensus       338 v~~~~~s~~~~~l~s~~  354 (366)
T 3k26_A          338 IRQTSFSRDSSILIAVC  354 (366)
T ss_dssp             EEEEEECTTSSEEEEEE
T ss_pred             eEEEEeCCCCCeEEEEe
Confidence            78899999999999988

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=95.94  E-value=0.054  Score=47.14  Aligned_cols=31  Identities=10%  Similarity=-0.032  Sum_probs=22.8

Q ss_pred             ceeEEEEecCCCEEEE-EeCCC--CcEEEEeccC
Q 031020            4 LITDFLISLDDRFLYF-SNWLH--GDIRQYNIED   34 (167)
Q Consensus         4 l~tdI~IS~DdRfLYV-Snw~h--g~I~qyDIsd   34 (167)
                      .+..+.+||||++|++ +++..  ..|+.||+..
T Consensus       256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~  289 (723)
T 1xfd_A          256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATT  289 (723)
T ss_dssp             EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT
T ss_pred             eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC
Confidence            4678999999999954 46543  4678888764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=95.94  E-value=0.12  Score=41.37  Aligned_cols=62  Identities=8%  Similarity=0.075  Sum_probs=42.9

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -+..+.+|||+++|..+. ..+.|+.||+.. ...+.+..+  .|                             ..+.-.
T Consensus        63 ~v~~~~~sp~g~~l~s~s-~D~~v~iw~~~~-~~~~~~~~~--~~-----------------------------h~~~v~  109 (345)
T 3fm0_A           63 TVRKVAWSPCGNYLASAS-FDATTCIWKKNQ-DDFECVTTL--EG-----------------------------HENEVK  109 (345)
T ss_dssp             CEEEEEECTTSSEEEEEE-TTSCEEEEEECC-C-EEEEEEE--CC-----------------------------CSSCEE
T ss_pred             cEEEEEECCCCCEEEEEE-CCCcEEEEEccC-CCeEEEEEc--cC-----------------------------CCCCce
Confidence            478899999999997666 478999999874 222222221  12                             112367


Q ss_pred             eEEEccCCCEEEEEe
Q 031020           84 MIQLSLDGKRLYVTN   98 (167)
Q Consensus        84 ~~~LS~DGkrLyVaN   98 (167)
                      .+++||||++|+.+.
T Consensus       110 ~v~~sp~~~~l~s~s  124 (345)
T 3fm0_A          110 SVAWAPSGNLLATCS  124 (345)
T ss_dssp             EEEECTTSSEEEEEE
T ss_pred             EEEEeCCCCEEEEEE
Confidence            889999999988876

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.89  E-value=0.016  Score=54.79  Aligned_cols=65  Identities=22%  Similarity=0.252  Sum_probs=50.1

Q ss_pred             CCceeEEEEecCCCEEEEEeCCCCcEEEEeccCC-----C---CC--eEEEEEEeCceeecCCceeEeeCCCCCCCCCCc
Q 031020            2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDP-----K---NP--VLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVP   71 (167)
Q Consensus         2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp-----~---~p--klvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~   71 (167)
                      |-.+-.+.+||||||+|+++=+...+.+||++.-     .   .|  .+++++.+|=                       
T Consensus       322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl-----------------------  378 (638)
T 3sbq_A          322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL-----------------------  378 (638)
T ss_dssp             SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS-----------------------
T ss_pred             CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC-----------------------
Confidence            3345578999999999999999999999999820     0   11  2466666542                       


Q ss_pred             cccCccCCCCCceEEEccCCCEEEEEeC
Q 031020           72 EVQGHRLRGGPQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        72 ~~~g~~~~g~P~~~~LS~DGkrLyVaNs   99 (167)
                               ||...+++.+| ..|.|--
T Consensus       379 ---------GPlHt~Fd~~G-~aYTtlf  396 (638)
T 3sbq_A          379 ---------GPLHTTFDGRG-NAYTTLF  396 (638)
T ss_dssp             ---------CEEEEEECSSS-EEEEEET
T ss_pred             ---------cccEEEECCCC-ceEeeee
Confidence                     49999999999 8888764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=95.89  E-value=0.12  Score=41.22  Aligned_cols=31  Identities=26%  Similarity=0.336  Sum_probs=25.9

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      ..++.+.+|+|+++|+.+. ..+.|+.||+..
T Consensus       182 ~~v~~~~~~~~~~~l~s~~-~d~~v~iwd~~~  212 (420)
T 3vl1_A          182 ATVTDIAIIDRGRNVLSAS-LDGTIRLWECGT  212 (420)
T ss_dssp             SCEEEEEEETTTTEEEEEE-TTSCEEEEETTT
T ss_pred             CcEEEEEEcCCCCEEEEEc-CCCcEEEeECCC
Confidence            4578999999999998666 478999999874

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=95.87  E-value=0.033  Score=48.69  Aligned_cols=60  Identities=13%  Similarity=0.169  Sum_probs=40.9

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      +..+.+|||+++|.+++. .+.|+.||+..   .++. .+..-+                             ..+....
T Consensus       451 v~~va~spdg~~lasgs~-D~~v~lwd~~~---~~~~-~~~~~~-----------------------------h~~~v~~  496 (611)
T 1nr0_A          451 SSCVALSNDKQFVAVGGQ-DSKVHVYKLSG---ASVS-EVKTIV-----------------------------HPAEITS  496 (611)
T ss_dssp             EEEEEECTTSCEEEEEET-TSEEEEEEEET---TEEE-EEEEEE-----------------------------CSSCEEE
T ss_pred             ceEEEEeCCCCEEEEeCC-CCeEEEEEccC---Ccee-eeeccC-----------------------------CCCceEE
Confidence            567889999998877764 67899999864   1221 111111                             1123678


Q ss_pred             EEEccCCCEEEEEe
Q 031020           85 IQLSLDGKRLYVTN   98 (167)
Q Consensus        85 ~~LS~DGkrLyVaN   98 (167)
                      +++||||++|..+.
T Consensus       497 v~fspdg~~las~s  510 (611)
T 1nr0_A          497 VAFSNNGAFLVATD  510 (611)
T ss_dssp             EEECTTSSEEEEEE
T ss_pred             EEECCCCCEEEEEc
Confidence            99999999998876

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=95.83  E-value=0.091  Score=40.32  Aligned_cols=63  Identities=17%  Similarity=0.245  Sum_probs=43.8

Q ss_pred             CceeEEEEecC---CCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCC
Q 031020            3 GLITDFLISLD---DRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR   79 (167)
Q Consensus         3 ~l~tdI~IS~D---dRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~   79 (167)
                      .-++.|.+|+|   +++|..++ ..|.|++||+.... ..+...+..                               ..
T Consensus        40 ~~v~~~~~~~~~~~g~~l~~~~-~dg~i~iw~~~~~~-~~~~~~~~~-------------------------------h~   86 (368)
T 3mmy_A           40 DSIGCLSFSPPTLPGNFLIAGS-WANDVRCWEVQDSG-QTIPKAQQM-------------------------------HT   86 (368)
T ss_dssp             SCEEEEEECCTTSSSEEEEEEE-TTSEEEEEEECTTS-CEEEEEEEE-------------------------------CS
T ss_pred             CceEEEEEcCCCCCceEEEEEC-CCCcEEEEEcCCCC-ceeEEEecc-------------------------------cc
Confidence            45789999999   58886665 57899999997522 222222221                               11


Q ss_pred             CCCceEEEccCCCEEEEEe
Q 031020           80 GGPQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        80 g~P~~~~LS~DGkrLyVaN   98 (167)
                      +....+++++||++|+++.
T Consensus        87 ~~v~~~~~~~~~~~l~s~~  105 (368)
T 3mmy_A           87 GPVLDVCWSDDGSKVFTAS  105 (368)
T ss_dssp             SCEEEEEECTTSSEEEEEE
T ss_pred             CCEEEEEECcCCCEEEEEc
Confidence            2367889999999999887

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=95.80  E-value=0.09  Score=41.49  Aligned_cols=65  Identities=11%  Similarity=0.114  Sum_probs=44.0

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeC-ceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVG-GLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~G-G~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      ..++.|.+|+|+ +|+ ++-..+.|++||+..   .+.+..+... +..                          .-.+.
T Consensus       187 ~~i~~~~~~~~~-~l~-~~~~dg~i~i~d~~~---~~~~~~~~~~~~h~--------------------------~~~~~  235 (397)
T 1sq9_A          187 QFATSVDISERG-LIA-TGFNNGTVQISELST---LRPLYNFESQHSMI--------------------------NNSNS  235 (397)
T ss_dssp             CCCCEEEECTTS-EEE-EECTTSEEEEEETTT---TEEEEEEECCC-----------------------------CCCCC
T ss_pred             CCceEEEECCCc-eEE-EEeCCCcEEEEECCC---CceeEEEecccccc--------------------------ccCCc
Confidence            346889999999 554 445688999999875   4555444420 000                          00123


Q ss_pred             CceEEEccCCCEEEEEe
Q 031020           82 PQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaN   98 (167)
                      ...+++++||++|+++.
T Consensus       236 i~~i~~~~~~~~l~~~~  252 (397)
T 1sq9_A          236 IRSVKFSPQGSLLAIAH  252 (397)
T ss_dssp             EEEEEECSSTTEEEEEE
T ss_pred             cceEEECCCCCEEEEEe
Confidence            78899999999999887

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=95.80  E-value=0.072  Score=42.73  Aligned_cols=63  Identities=3%  Similarity=-0.003  Sum_probs=43.5

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -+..+.+|||+++|..+. ..+.|+.||+......+.+..+.  +                             ..+.-.
T Consensus       107 ~v~~v~~sp~~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~--~-----------------------------h~~~v~  154 (345)
T 3fm0_A          107 EVKSVAWAPSGNLLATCS-RDKSVWVWEVDEEDEYECVSVLN--S-----------------------------HTQDVK  154 (345)
T ss_dssp             CEEEEEECTTSSEEEEEE-TTSCEEEEEECTTSCEEEEEEEC--C-----------------------------CCSCEE
T ss_pred             CceEEEEeCCCCEEEEEE-CCCeEEEEECCCCCCeEEEEEec--C-----------------------------cCCCeE
Confidence            478899999999987666 47899999998644333332221  1                             011256


Q ss_pred             eEEEccCCCEEEEEe
Q 031020           84 MIQLSLDGKRLYVTN   98 (167)
Q Consensus        84 ~~~LS~DGkrLyVaN   98 (167)
                      .++++|+|++|..+.
T Consensus       155 ~~~~~p~~~~l~s~s  169 (345)
T 3fm0_A          155 HVVWHPSQELLASAS  169 (345)
T ss_dssp             EEEECSSSSCEEEEE
T ss_pred             EEEECCCCCEEEEEe
Confidence            688899999888775

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=95.80  E-value=0.074  Score=42.14  Aligned_cols=61  Identities=13%  Similarity=0.044  Sum_probs=42.6

Q ss_pred             CceeEEEEec-CCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            3 GLITDFLISL-DDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         3 ~l~tdI~IS~-DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      ..++.+.+|+ |+++|+.++ ..+.|+.||+..   .+.+.++...                               .+.
T Consensus       263 ~~v~~~~~s~~~~~~l~s~~-~dg~v~~wd~~~---~~~~~~~~~~-------------------------------~~~  307 (416)
T 2pm9_A          263 KGILSLDWCHQDEHLLLSSG-RDNTVLLWNPES---AEQLSQFPAR-------------------------------GNW  307 (416)
T ss_dssp             SCEEEEEECSSCSSCEEEEE-SSSEEEEECSSS---CCEEEEEECS-------------------------------SSC
T ss_pred             CceeEEEeCCCCCCeEEEEe-CCCCEEEeeCCC---CccceeecCC-------------------------------CCc
Confidence            4578999999 888887666 478999999775   4455444321                               123


Q ss_pred             CceEEEccCCCEEEEEe
Q 031020           82 PQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaN   98 (167)
                      ...+++||||++++++.
T Consensus       308 v~~~~~s~~~~~~l~s~  324 (416)
T 2pm9_A          308 CFKTKFAPEAPDLFACA  324 (416)
T ss_dssp             CCCEEECTTCTTEEEEC
T ss_pred             eEEEEECCCCCCEEEEE
Confidence            67899999995555555

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=95.71  E-value=0.14  Score=41.34  Aligned_cols=63  Identities=11%  Similarity=0.087  Sum_probs=43.8

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .-+..+.+|||+++|..+. ..+.|+.||+..   .+.+.... ..                            ....+.
T Consensus       241 ~~v~~v~~~p~~~~l~s~s-~D~~v~lwd~~~---~~~~~~~~-~~----------------------------~~~~~~  287 (354)
T 2pbi_B          241 SDVNSVRYYPSGDAFASGS-DDATCRLYDLRA---DREVAIYS-KE----------------------------SIIFGA  287 (354)
T ss_dssp             SCEEEEEECTTSSEEEEEE-TTSCEEEEETTT---TEEEEEEC-CT----------------------------TCCSCE
T ss_pred             CCeEEEEEeCCCCEEEEEe-CCCeEEEEECCC---CcEEEEEc-CC----------------------------Ccccce
Confidence            3478899999999887666 578999999875   22222111 11                            111235


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      ..+++|+||++|+++.
T Consensus       288 ~~~~~s~~g~~l~~g~  303 (354)
T 2pbi_B          288 SSVDFSLSGRLLFAGY  303 (354)
T ss_dssp             EEEEECTTSSEEEEEE
T ss_pred             eEEEEeCCCCEEEEEE
Confidence            6789999999999887

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=95.69  E-value=0.039  Score=45.25  Aligned_cols=31  Identities=13%  Similarity=0.039  Sum_probs=27.5

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      -+..+.+|+|++.+++|+-..+.|+.||+..
T Consensus       171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~  201 (344)
T 4gqb_B          171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRC  201 (344)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTS
T ss_pred             ceEEEEecCCCCCceeeeccccccccccccc
Confidence            4678999999998889988899999999875

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=95.68  E-value=0.081  Score=40.70  Aligned_cols=73  Identities=16%  Similarity=0.112  Sum_probs=46.6

Q ss_pred             CceeEEEEec-CCCEEEEEeCCCCcEEEEeccCCC-C--CeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccC
Q 031020            3 GLITDFLISL-DDRFLYFSNWLHGDIRQYNIEDPK-N--PVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRL   78 (167)
Q Consensus         3 ~l~tdI~IS~-DdRfLYVSnw~hg~I~qyDIsdp~-~--pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~   78 (167)
                      .-+..|.+++ |+++|++++ ..|.|+.|++.... +  .+....+.....                      ...|...
T Consensus       194 ~~i~~i~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~  250 (342)
T 1yfq_A          194 YQIRDVALLPKEQEGYACSS-IDGRVAVEFFDDQGDDYNSSKRFAFRCHRL----------------------NLKDTNL  250 (342)
T ss_dssp             SCEEEEEECSGGGCEEEEEE-TTSEEEEEECCTTCCSTTCTTCEEEECCCC----------------------CTTCCSS
T ss_pred             CceeEEEECCCCCCEEEEEe-cCCcEEEEEEcCCCcccccccceeeecccc----------------------ccccccc
Confidence            4578899999 999988777 48899999987531 0  122222221110                      0011122


Q ss_pred             CCCCceEEEccCCCEEEEEe
Q 031020           79 RGGPQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        79 ~g~P~~~~LS~DGkrLyVaN   98 (167)
                      .+....+++|+||++|+++.
T Consensus       251 ~~~i~~~~~s~~~~~l~~~~  270 (342)
T 1yfq_A          251 AYPVNSIEFSPRHKFLYTAG  270 (342)
T ss_dssp             CCCEEEEEECTTTCCEEEEE
T ss_pred             ceeEEEEEEcCCCCEEEEec
Confidence            34577899999999999887

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.66  E-value=0.028  Score=49.30  Aligned_cols=66  Identities=20%  Similarity=0.317  Sum_probs=42.3

Q ss_pred             eEEEEecC---CCEEEEEeCC------------CCcEEEEeccCCCCCeEEE-EEEeCceeecCCceeEeeCCCCCCCCC
Q 031020            6 TDFLISLD---DRFLYFSNWL------------HGDIRQYNIEDPKNPVLTG-QIWVGGLFRKGSPVVAVTDDGQPYQSD   69 (167)
Q Consensus         6 tdI~IS~D---dRfLYVSnw~------------hg~I~qyDIsdp~~pklvg-~v~~GG~~~~~~~v~v~~~~~~~~~p~   69 (167)
                      -+|+++||   +++|||+.-.            ...|.+|+.++ ...++.. ++-+-+                  .|.
T Consensus        80 lgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~-~~~~~~~~~~i~~~------------------~p~  140 (454)
T 1cru_A           80 LGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNK-STDTLEKPVDLLAG------------------LPS  140 (454)
T ss_dssp             EEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEET-TTTEEEEEEEEEEE------------------ECC
T ss_pred             eEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECC-CCCCcCCcEEEEEc------------------CCC
Confidence            38999999   9999999853            45788888764 2333321 111100                  010


Q ss_pred             CccccCccCCCCCceEEEccCCCEEEEEe
Q 031020           70 VPEVQGHRLRGGPQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        70 ~~~~~g~~~~g~P~~~~LS~DGkrLyVaN   98 (167)
                          .+.|   .+..|.+++||+ ||||.
T Consensus       141 ----~~~H---~~~~l~f~pDG~-Lyv~~  161 (454)
T 1cru_A          141 ----SKDH---QSGRLVIGPDQK-IYYTI  161 (454)
T ss_dssp             ----CSSC---CEEEEEECTTSC-EEEEE
T ss_pred             ----CCCC---CCCeEeECCCCe-EEEEE
Confidence                0112   489999999996 99985

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=95.62  E-value=0.11  Score=41.29  Aligned_cols=60  Identities=13%  Similarity=0.276  Sum_probs=43.3

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+.++.+|+|+++|..+. ..+.|+.||+..   .+...++.  |                             ..+.-.
T Consensus        78 ~V~~~~~~~~~~~l~s~s-~D~~v~lwd~~~---~~~~~~~~--~-----------------------------h~~~v~  122 (343)
T 2xzm_R           78 FVSDLALSQENCFAISSS-WDKTLRLWDLRT---GTTYKRFV--G-----------------------------HQSEVY  122 (343)
T ss_dssp             CEEEEEECSSTTEEEEEE-TTSEEEEEETTS---SCEEEEEE--C-----------------------------CCSCEE
T ss_pred             ceEEEEECCCCCEEEEEc-CCCcEEEEECCC---CcEEEEEc--C-----------------------------CCCcEE
Confidence            478899999999987555 578999999875   33333322  1                             012256


Q ss_pred             eEEEccCCCEEEEEe
Q 031020           84 MIQLSLDGKRLYVTN   98 (167)
Q Consensus        84 ~~~LS~DGkrLyVaN   98 (167)
                      .+++||||++|+.+.
T Consensus       123 ~v~~sp~~~~l~s~~  137 (343)
T 2xzm_R          123 SVAFSPDNRQILSAG  137 (343)
T ss_dssp             EEEECSSTTEEEEEE
T ss_pred             EEEECCCCCEEEEEc
Confidence            789999999998876

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=95.60  E-value=0.06  Score=45.07  Aligned_cols=60  Identities=13%  Similarity=0.153  Sum_probs=43.0

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      +-++.+++|||+++|..+. ..+.|++||++.    ++...+.  |                             ..+..
T Consensus        58 ~~V~~l~fspdg~~las~~-~d~~i~vWd~~~----~~~~~~~--~-----------------------------~~~~v  101 (577)
T 2ymu_A           58 SSVWGVAFSPDGQTIASAS-DDKTVKLWNRNG----QLLQTLT--G-----------------------------HSSSV  101 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEE-TTSCEEEEETTS----CEEEEEC--C-----------------------------CSSCE
T ss_pred             CCEEEEEECCCCCEEEEEe-CCCEEEEEECCC----CEEEEEE--C-----------------------------CCCCE
Confidence            3578999999999997655 578999999652    3333221  1                             11236


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      +.+++||||++|..+.
T Consensus       102 ~~~~~s~d~~~l~~~~  117 (577)
T 2ymu_A          102 RGVAFSPDGQTIASAS  117 (577)
T ss_dssp             EEEEECTTSSEEEEEE
T ss_pred             EEEEECCCCCEEEEEc
Confidence            7899999999998775

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=95.57  E-value=0.098  Score=43.63  Aligned_cols=65  Identities=12%  Similarity=0.026  Sum_probs=45.5

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .-+..+.+|+|++++.+++-..+.|+.||+..   .++...+.....                        ++.    ..
T Consensus       161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~---~~~~~~~~~~~~------------------------~~~----~v  209 (615)
T 1pgu_A          161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPP---FKFSASDRTHHK------------------------QGS----FV  209 (615)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTTEEEEEETTT---BEEEEEECSSSC------------------------TTC----CE
T ss_pred             ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC---cceeeeecccCC------------------------CCc----eE
Confidence            35788999999997777777889999999654   444443321000                        000    26


Q ss_pred             ceEEEccC-CCEEEEEe
Q 031020           83 QMIQLSLD-GKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~D-GkrLyVaN   98 (167)
                      ..+++++| |++|+++.
T Consensus       210 ~~~~~~~~~~~~l~~~~  226 (615)
T 1pgu_A          210 RDVEFSPDSGEFVITVG  226 (615)
T ss_dssp             EEEEECSTTCCEEEEEE
T ss_pred             EEEEECCCCCCEEEEEe
Confidence            77899999 99999887

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.55  E-value=0.089  Score=46.08  Aligned_cols=62  Identities=6%  Similarity=-0.082  Sum_probs=46.1

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      +-++.+.+|+|+++|.++.. .|.|++||+..   .+.+.++...                               .+..
T Consensus        56 ~~v~~~~~s~~~~~l~~~~~-dg~i~vw~~~~---~~~~~~~~~~-------------------------------~~~v  100 (814)
T 3mkq_A           56 TPVRAGKFIARKNWIIVGSD-DFRIRVFNYNT---GEKVVDFEAH-------------------------------PDYI  100 (814)
T ss_dssp             SCEEEEEEEGGGTEEEEEET-TSEEEEEETTT---CCEEEEEECC-------------------------------SSCE
T ss_pred             CcEEEEEEeCCCCEEEEEeC-CCeEEEEECCC---CcEEEEEecC-------------------------------CCCE
Confidence            45789999999999987765 89999999875   3444333211                               1237


Q ss_pred             ceEEEccCCCEEEEEeC
Q 031020           83 QMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNs   99 (167)
                      ..+++|+||++|+++..
T Consensus       101 ~~~~~s~~~~~l~~~~~  117 (814)
T 3mkq_A          101 RSIAVHPTKPYVLSGSD  117 (814)
T ss_dssp             EEEEECSSSSEEEEEET
T ss_pred             EEEEEeCCCCEEEEEcC
Confidence            78999999999988763

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=95.51  E-value=0.21  Score=40.52  Aligned_cols=67  Identities=12%  Similarity=0.031  Sum_probs=43.3

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -+..|.+|||+++|. |+-..+.|+.||+..   .+.........                    ..    .........
T Consensus       251 ~v~~v~~~p~~~~l~-s~s~D~~i~lwd~~~---~~~~~~~~~~~--------------------~~----~~~~~~~v~  302 (380)
T 3iz6_a          251 DINSVKFFPDGQRFG-TGSDDGTCRLFDMRT---GHQLQVYNREP--------------------DR----NDNELPIVT  302 (380)
T ss_dssp             CCCEEEECTTSSEEE-EECSSSCEEEEETTT---TEEEEEECCCC--------------------SS----SCCSSCSCS
T ss_pred             CeEEEEEecCCCeEE-EEcCCCeEEEEECCC---CcEEEEecccc--------------------cc----cccccCceE
Confidence            467899999999885 555689999999875   33332221110                    00    000011246


Q ss_pred             eEEEccCCCEEEEEe
Q 031020           84 MIQLSLDGKRLYVTN   98 (167)
Q Consensus        84 ~~~LS~DGkrLyVaN   98 (167)
                      .+++|++|++|+++.
T Consensus       303 ~~~~s~~g~~l~~g~  317 (380)
T 3iz6_a          303 SVAFSISGRLLFAGY  317 (380)
T ss_dssp             EEEECSSSSEEEEEC
T ss_pred             EEEECCCCCEEEEEE
Confidence            789999999999987

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=95.51  E-value=0.11  Score=40.59  Aligned_cols=87  Identities=15%  Similarity=0.190  Sum_probs=51.3

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeE-E--------------------EEEEeCceeecCCceeEeeC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVL-T--------------------GQIWVGGLFRKGSPVVAVTD   61 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pkl-v--------------------g~v~~GG~~~~~~~v~v~~~   61 (167)
                      ..++.|.+|+|+++|++++ ..+.|++||+........ .                    ..+.++   ..++.|+|..-
T Consensus       246 ~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~v~d~  321 (408)
T 4a11_B          246 GKVNGLCFTSDGLHLLTVG-TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFV---PYGSTIAVYTV  321 (408)
T ss_dssp             SCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEE---EETTEEEEEET
T ss_pred             CceeEEEEcCCCCEEEEec-CCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEE---ecCCEEEEEEC
Confidence            3478999999999998776 578999999986332110 0                    011111   12234444443


Q ss_pred             CCCCCCCCCccccCccCCCCCceEEEccCCCEEEEEe
Q 031020           62 DGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        62 ~~~~~~p~~~~~~g~~~~g~P~~~~LS~DGkrLyVaN   98 (167)
                      .....   ....+|.  .+....+++|+||++|+.+.
T Consensus       322 ~~~~~---~~~~~~~--~~~v~~~~~s~~~~~l~s~~  353 (408)
T 4a11_B          322 YSGEQ---ITMLKGH--YKTVDCCVFQSNFQELYSGS  353 (408)
T ss_dssp             TTCCE---EEEECCC--SSCEEEEEEETTTTEEEEEE
T ss_pred             cCCcc---eeeeccC--CCeEEEEEEcCCCCEEEEEC
Confidence            22111   1112221  23467899999999999887

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=95.49  E-value=0.026  Score=44.75  Aligned_cols=64  Identities=11%  Similarity=0.085  Sum_probs=42.4

Q ss_pred             CceeEEEEecCCCEEEEEeCCCC---cEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHG---DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR   79 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg---~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~   79 (167)
                      ..++.|.+|+|++.+++++-..+   .|++||+.....+...  +.. +                             ..
T Consensus       215 ~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~--~~~-~-----------------------------~~  262 (416)
T 2pm9_A          215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQT--LNQ-G-----------------------------HQ  262 (416)
T ss_dssp             CCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBC--CCS-C-----------------------------CS
T ss_pred             CceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEE--eec-C-----------------------------cc
Confidence            45789999999965556665666   9999998863222110  100 0                             11


Q ss_pred             CCCceEEEcc-CCCEEEEEe
Q 031020           80 GGPQMIQLSL-DGKRLYVTN   98 (167)
Q Consensus        80 g~P~~~~LS~-DGkrLyVaN   98 (167)
                      +....+++|| ||++|+++.
T Consensus       263 ~~v~~~~~s~~~~~~l~s~~  282 (416)
T 2pm9_A          263 KGILSLDWCHQDEHLLLSSG  282 (416)
T ss_dssp             SCEEEEEECSSCSSCEEEEE
T ss_pred             CceeEEEeCCCCCCeEEEEe
Confidence            2367889999 888888876

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=95.47  E-value=0.093  Score=48.82  Aligned_cols=61  Identities=10%  Similarity=-0.007  Sum_probs=45.1

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      ..++.+.+|+|+++|..+. ..|.|++||+..   .+.+.++.  |                             ..+..
T Consensus       616 ~~v~~~~~s~~~~~l~s~~-~d~~i~vw~~~~---~~~~~~~~--~-----------------------------h~~~v  660 (1249)
T 3sfz_A          616 DAVYHACFSQDGQRIASCG-ADKTLQVFKAET---GEKLLDIK--A-----------------------------HEDEV  660 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEE-TTSCEEEEETTT---CCEEEEEC--C-----------------------------CSSCE
T ss_pred             ccEEEEEECCCCCEEEEEe-CCCeEEEEECCC---CCEEEEec--c-----------------------------CCCCE
Confidence            4578999999999996655 678999999865   33443332  1                             12236


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      ..+++|+||++|.++.
T Consensus       661 ~~~~~s~~~~~l~s~~  676 (1249)
T 3sfz_A          661 LCCAFSSDDSYIATCS  676 (1249)
T ss_dssp             EEEEECTTSSEEEEEE
T ss_pred             EEEEEecCCCEEEEEe
Confidence            7899999999999886

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=95.47  E-value=0.03  Score=45.54  Aligned_cols=32  Identities=13%  Similarity=0.095  Sum_probs=26.1

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      ..++.+.+|||+..+.++.-..+.|+.||+..
T Consensus       227 ~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~  258 (357)
T 4g56_B          227 TIPTSVTWHPEKDDTFACGDETGNVSLVNIKN  258 (357)
T ss_dssp             SCEEEEEECTTSTTEEEEEESSSCEEEEESSC
T ss_pred             ccccchhhhhcccceEEEeecccceeEEECCC
Confidence            45788999999877767766788999999875

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=95.40  E-value=0.17  Score=41.35  Aligned_cols=59  Identities=14%  Similarity=0.093  Sum_probs=42.1

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -+..+.+|+|+++|+.+. ..+.|+.||+..   .+....+...+                                +..
T Consensus       167 ~v~~~~~~p~~~~l~s~s-~d~~v~iwd~~~---~~~~~~~~~~~--------------------------------~v~  210 (393)
T 1erj_A          167 DIYSLDYFPSGDKLVSGS-GDRTVRIWDLRT---GQCSLTLSIED--------------------------------GVT  210 (393)
T ss_dssp             CEEEEEECTTSSEEEEEE-TTSEEEEEETTT---TEEEEEEECSS--------------------------------CEE
T ss_pred             CEEEEEEcCCCCEEEEec-CCCcEEEEECCC---CeeEEEEEcCC--------------------------------CcE
Confidence            478899999999996555 578999999865   34333332211                                266


Q ss_pred             eEEEcc-CCCEEEEEe
Q 031020           84 MIQLSL-DGKRLYVTN   98 (167)
Q Consensus        84 ~~~LS~-DGkrLyVaN   98 (167)
                      .+++++ ||++|.++.
T Consensus       211 ~~~~~~~~~~~l~~~s  226 (393)
T 1erj_A          211 TVAVSPGDGKYIAAGS  226 (393)
T ss_dssp             EEEECSTTCCEEEEEE
T ss_pred             EEEEECCCCCEEEEEc
Confidence            788888 888887765

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=95.39  E-value=0.074  Score=40.92  Aligned_cols=32  Identities=16%  Similarity=0.051  Sum_probs=24.9

Q ss_pred             CceeEEEEecCCCEEEEEe-C--CCCcEEEEeccC
Q 031020            3 GLITDFLISLDDRFLYFSN-W--LHGDIRQYNIED   34 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSn-w--~hg~I~qyDIsd   34 (167)
                      .-+.+|.+|||++.|.++. +  ..+.|+.||+..
T Consensus        19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~   53 (357)
T 3i2n_A           19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQH   53 (357)
T ss_dssp             SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECS
T ss_pred             CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCC
Confidence            3578999999997666554 3  389999999875

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=95.38  E-value=0.059  Score=50.19  Aligned_cols=64  Identities=8%  Similarity=0.016  Sum_probs=44.1

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      +.+..++.||||+.|-++. .+|.|+.||...     +..+.. ..                      ..+..+    .-
T Consensus        86 ~~V~~vawSPdG~~LAs~s-~dg~V~iwd~~~-----~l~~l~-~~----------------------~~~~~~----sv  132 (588)
T 2j04_A           86 CYPRVCKPSPIDDWMAVLS-NNGNVSVFKDNK-----MLTNLD-SK----------------------GNLSSR----TY  132 (588)
T ss_dssp             CCEEEEEECSSSSCEEEEE-TTSCEEEEETTE-----EEEECC-CS----------------------SCSTTT----CE
T ss_pred             CcEEEEEECCCCCEEEEEe-CCCcEEEEeCCc-----eeeecc-CC----------------------Cccccc----cE
Confidence            4589999999999996655 688999999432     332222 11                      001111    25


Q ss_pred             ceEEEccCCCEEEEEeC
Q 031020           83 QMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNs   99 (167)
                      +.+++||||++|++++.
T Consensus       133 ~svafSPDG~~LAsgs~  149 (588)
T 2j04_A          133 HCFEWNPIESSIVVGNE  149 (588)
T ss_dssp             EEEEECSSSSCEEEEET
T ss_pred             EEEEEcCCCCEEEEEcC
Confidence            68999999999999993

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=95.36  E-value=0.11  Score=39.16  Aligned_cols=59  Identities=12%  Similarity=0.077  Sum_probs=40.5

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      +.++.|.+|+|++ | ++.-..|.|+.||+..   .++...+....                               +..
T Consensus       226 ~~i~~~~~~~~~~-l-~~~~~dg~v~iwd~~~---~~~~~~~~~~~-------------------------------~~i  269 (313)
T 3odt_A          226 SFVYCIKLLPNGD-I-VSCGEDRTVRIWSKEN---GSLKQVITLPA-------------------------------ISI  269 (313)
T ss_dssp             SCEEEEEECTTSC-E-EEEETTSEEEEECTTT---CCEEEEEECSS-------------------------------SCE
T ss_pred             ceEEEEEEecCCC-E-EEEecCCEEEEEECCC---CceeEEEeccC-------------------------------ceE
Confidence            4578999999996 3 3444689999999875   44554443221                               126


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      ..+++++||+ |+++.
T Consensus       270 ~~~~~~~~~~-~~~~~  284 (313)
T 3odt_A          270 WSVDCMSNGD-IIVGS  284 (313)
T ss_dssp             EEEEECTTSC-EEEEE
T ss_pred             EEEEEccCCC-EEEEe
Confidence            7889999999 44554

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=95.33  E-value=0.083  Score=41.63  Aligned_cols=31  Identities=6%  Similarity=-0.156  Sum_probs=25.9

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      ..+..|.+|+|+++|..++. .+.|+.||+..
T Consensus       147 ~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~  177 (377)
T 3dwl_C          147 STILSLDWHPNNVLLAAGCA-DRKAYVLSAYV  177 (377)
T ss_dssp             SCEEEEEECTTSSEEEEEES-SSCEEEEEECC
T ss_pred             CCeEEEEEcCCCCEEEEEeC-CCEEEEEEEEe
Confidence            45789999999999987764 68999999863

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.28  E-value=0.09  Score=45.32  Aligned_cols=88  Identities=19%  Similarity=0.143  Sum_probs=52.5

Q ss_pred             eeEEEEecC---CCEEEEEe--CCCCcEEEEeccCCC-------CCe-EEEEEEeCceeecCCceeEeeCCCCCCCCCCc
Q 031020            5 ITDFLISLD---DRFLYFSN--WLHGDIRQYNIEDPK-------NPV-LTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVP   71 (167)
Q Consensus         5 ~tdI~IS~D---dRfLYVSn--w~hg~I~qyDIsdp~-------~pk-lvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~   71 (167)
                      +.+|+++||   +++|||+-  ...+.|.+|..++..       .++ +...++.+                        
T Consensus        82 llGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~------------------------  137 (347)
T 3das_A           82 LLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKG------------------------  137 (347)
T ss_dssp             EEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCC------------------------
T ss_pred             ceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCC------------------------
Confidence            468999997   88999962  345788888877411       111 11122211                        


Q ss_pred             cccCccCCCCCceEEEccCCCEEEEEeC-CCccccccccccccccCcEEEEEEeeC
Q 031020           72 EVQGHRLRGGPQMIQLSLDGKRLYVTNS-LFSAWDCQFYPELKEKGSHMLQIDVNS  126 (167)
Q Consensus        72 ~~~g~~~~g~P~~~~LS~DGkrLyVaNs-l~s~wD~Qfyp~~~~~g~~~~~~dvD~  126 (167)
                         +.|   ....+.+++|| +|||+.- -......|.   .-+..+.|+|++.|.
T Consensus       138 ---~~H---~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd---~~~~~G~IlRi~~dG  183 (347)
T 3das_A          138 ---VIH---NGGRIAFGPDK-MLYAGTGESGDTGLSQD---RKSLGGKILRMTPDG  183 (347)
T ss_dssp             ---SSC---CCCCEEECTTS-CEEEECBCTTCGGGTTC---TTCSTTCEEEECTTS
T ss_pred             ---CCc---cCccccCCCCC-CEEEEECCCCCCccccC---CCCCCCEEEEEeCCC
Confidence               112   37889999999 5999852 111122231   113467899998873

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=95.24  E-value=0.035  Score=47.34  Aligned_cols=33  Identities=18%  Similarity=0.085  Sum_probs=28.8

Q ss_pred             CCceeEEEEecCCCEEEE---EeCCCCcEEEEeccC
Q 031020            2 PGLITDFLISLDDRFLYF---SNWLHGDIRQYNIED   34 (167)
Q Consensus         2 p~l~tdI~IS~DdRfLYV---Snw~hg~I~qyDIsd   34 (167)
                      ++-+..+.+|+|+++|+|   |+...+.|++||+..
T Consensus        92 ~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~  127 (434)
T 2oit_A           92 KFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRT  127 (434)
T ss_dssp             SSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHH
T ss_pred             CCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccc
Confidence            345889999999999998   777889999999875

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=95.23  E-value=0.16  Score=41.88  Aligned_cols=68  Identities=9%  Similarity=-0.012  Sum_probs=46.6

Q ss_pred             eEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceE
Q 031020            6 TDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMI   85 (167)
Q Consensus         6 tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~   85 (167)
                      -+|++..+++ +||++-..+.|.+|++.+....+.+.++.++- .                        -..-..+.+-+
T Consensus        73 EGIa~~~~g~-~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~-~------------------------~~~~N~g~EGL  126 (255)
T 3qqz_A           73 ETIEYIGDNQ-FVISDERDYAIYVISLTPNSEVKILKKIKIPL-Q------------------------ESPTNCGFEGL  126 (255)
T ss_dssp             EEEEECSTTE-EEEEETTTTEEEEEEECTTCCEEEEEEEECCC-S------------------------SCCCSSCCEEE
T ss_pred             HHeEEeCCCE-EEEEECCCCcEEEEEcCCCCeeeeeeeecccc-c------------------------cccccCCcceE
Confidence            4688888886 66788777899999998644333444444321 0                        00113347999


Q ss_pred             EEccCCCEEEEEeC
Q 031020           86 QLSLDGKRLYVTNS   99 (167)
Q Consensus        86 ~LS~DGkrLyVaNs   99 (167)
                      +.+++++|||++++
T Consensus       127 A~d~~~~~L~va~E  140 (255)
T 3qqz_A          127 AYSRQDHTFWFFKE  140 (255)
T ss_dssp             EEETTTTEEEEEEE
T ss_pred             EEeCCCCEEEEEEC
Confidence            99999999999995

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=95.23  E-value=0.17  Score=41.11  Aligned_cols=64  Identities=20%  Similarity=0.260  Sum_probs=44.1

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .++.+.+|+|+++|+... ..|.|++||+..   .+....+.  ...                       +  ...+.-.
T Consensus       300 ~v~~~~~s~~g~~l~~g~-~dg~i~vwd~~~---~~~~~~~~--~~~-----------------------~--~h~~~v~  348 (380)
T 3iz6_a          300 IVTSVAFSISGRLLFAGY-SNGDCYVWDTLL---AEMVLNLG--TLQ-----------------------N--SHEGRIS  348 (380)
T ss_dssp             SCSEEEECSSSSEEEEEC-TTSCEEEEETTT---CCEEEEEC--CSC-----------------------S--SCCCCCC
T ss_pred             ceEEEEECCCCCEEEEEE-CCCCEEEEECCC---CceEEEEe--ccc-----------------------C--CCCCceE
Confidence            478899999999997665 589999999764   33333221  100                       0  0123367


Q ss_pred             eEEEccCCCEEEEEe
Q 031020           84 MIQLSLDGKRLYVTN   98 (167)
Q Consensus        84 ~~~LS~DGkrLyVaN   98 (167)
                      -+++||||++|+.+.
T Consensus       349 ~l~~s~dg~~l~sgs  363 (380)
T 3iz6_a          349 CLGLSSDGSALCTGS  363 (380)
T ss_dssp             EEEECSSSSEEEEEC
T ss_pred             EEEECCCCCEEEEee
Confidence            899999999988776

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=95.19  E-value=0.071  Score=46.70  Aligned_cols=29  Identities=14%  Similarity=-0.045  Sum_probs=23.7

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      -+..+.+||||++|..+.  .+.|+.||+..
T Consensus       111 ~~~~~~~SPDG~~la~~~--~~~i~~~~~~~  139 (719)
T 1z68_A          111 PIQYLCWSPVGSKLAYVY--QNNIYLKQRPG  139 (719)
T ss_dssp             SBCCEEECSSTTCEEEEE--TTEEEEESSTT
T ss_pred             ccccceECCCCCEEEEEE--CCeEEEEeCCC
Confidence            357799999999987774  57999999864

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=95.11  E-value=0.15  Score=45.71  Aligned_cols=26  Identities=23%  Similarity=0.312  Sum_probs=21.9

Q ss_pred             eEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            6 TDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         6 tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      ..+..|+|+++||.+   .+.|+.||+..
T Consensus        20 ~~~~w~~dg~~~~~~---~~~i~~~~~~~   45 (740)
T 4a5s_A           20 YSLRWISDHEYLYKQ---ENNILVFNAEY   45 (740)
T ss_dssp             CCEEECSSSEEEEEE---TTEEEEEETTT
T ss_pred             cccEECCCCcEEEEc---CCcEEEEECCC
Confidence            467899999988876   78999999874

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=95.08  E-value=0.053  Score=42.79  Aligned_cols=65  Identities=11%  Similarity=-0.067  Sum_probs=43.2

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .-+..+.+|+|+++|++++. .+.|+.||+.......+...+. ++                             ..+..
T Consensus       101 ~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~-~~-----------------------------h~~~v  149 (377)
T 3dwl_C          101 RAATFVRWSPNEDKFAVGSG-ARVISVCYFEQENDWWVSKHLK-RP-----------------------------LRSTI  149 (377)
T ss_dssp             SCEEEEECCTTSSCCEEEES-SSCEEECCC-----CCCCEEEC-SS-----------------------------CCSCE
T ss_pred             CceEEEEECCCCCEEEEEec-CCeEEEEEECCcccceeeeEee-cc-----------------------------cCCCe
Confidence            35788999999999987775 7899999987532222222222 10                             12237


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      ..+++++||++|+++.
T Consensus       150 ~~~~~~~~~~~l~~~~  165 (377)
T 3dwl_C          150 LSLDWHPNNVLLAAGC  165 (377)
T ss_dssp             EEEEECTTSSEEEEEE
T ss_pred             EEEEEcCCCCEEEEEe
Confidence            7899999999998887

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=95.06  E-value=0.018  Score=53.51  Aligned_cols=59  Identities=20%  Similarity=0.305  Sum_probs=42.9

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      +-++.+.+|+|+++|..++   |.|..||+..   .+.+..+...+                               +..
T Consensus      1179 ~~v~~l~fs~dg~~l~s~~---g~v~vwd~~~---g~~~~~~~~~~-------------------------------~~i 1221 (1249)
T 3sfz_A         1179 GWVTDVCFSPDSKTLVSAG---GYLKWWNVAT---GDSSQTFYTNG-------------------------------TNL 1221 (1249)
T ss_dssp             SCCCEEEECTTSSCEEEES---SSEEEBCSSS---CBCCCCCCCSS-------------------------------CCC
T ss_pred             ceEEEEEECCCCCEEEECC---CeEEEEECCC---CceeeeeeccC-------------------------------Ccc
Confidence            3478999999999997774   8999999875   22222222111                               126


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      ..+++|+||++|+++.
T Consensus      1222 ~~~~~s~dg~~l~~~~ 1237 (1249)
T 3sfz_A         1222 KKIHVSPDFRTYVTVD 1237 (1249)
T ss_dssp             CCCEECSSSCCEEEEC
T ss_pred             cEEEECCCCCEEEEec
Confidence            7799999999999888

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=95.04  E-value=0.19  Score=40.02  Aligned_cols=61  Identities=11%  Similarity=0.146  Sum_probs=41.9

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .-+..+.+|||+++|..+. ..+.|+.||+.....+.  .....++                            .    .
T Consensus       214 ~~v~~~~~s~~g~~l~sgs-~dg~v~iwd~~~~~~~~--~~~~~~~----------------------------~----v  258 (343)
T 2xzm_R          214 SNVNHLSISPNGKYIATGG-KDKKLLIWDILNLTYPQ--REFDAGS----------------------------T----I  258 (343)
T ss_dssp             SCEEEEEECTTSSEEEEEE-TTCEEEEEESSCCSSCS--EEEECSS----------------------------C----E
T ss_pred             ccceEEEECCCCCEEEEEc-CCCeEEEEECCCCcccc--eeecCCC----------------------------c----E
Confidence            3478899999999986555 68899999985432221  1121222                            1    5


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      ..+++||+|+.|.++.
T Consensus       259 ~~v~~sp~~~~la~~~  274 (343)
T 2xzm_R          259 NQIAFNPKLQWVAVGT  274 (343)
T ss_dssp             EEEEECSSSCEEEEEE
T ss_pred             EEEEECCCCCEEEEEC
Confidence            6789999999887655

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=95.01  E-value=0.12  Score=41.78  Aligned_cols=59  Identities=15%  Similarity=0.230  Sum_probs=43.0

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      ++.+.+|+|+++|+++. ..+.|++||+..   .+.+..+.  |                             ..+....
T Consensus       287 ~~~~~~s~~g~~l~~g~-~d~~i~vwd~~~---~~~~~~l~--~-----------------------------h~~~v~~  331 (354)
T 2pbi_B          287 ASSVDFSLSGRLLFAGY-NDYTINVWDVLK---GSRVSILF--G-----------------------------HENRVST  331 (354)
T ss_dssp             EEEEEECTTSSEEEEEE-TTSCEEEEETTT---CSEEEEEC--C-----------------------------CSSCEEE
T ss_pred             eeEEEEeCCCCEEEEEE-CCCcEEEEECCC---CceEEEEE--C-----------------------------CCCcEEE
Confidence            57899999999998776 578999999864   33333221  2                             1123677


Q ss_pred             EEEccCCCEEEEEe
Q 031020           85 IQLSLDGKRLYVTN   98 (167)
Q Consensus        85 ~~LS~DGkrLyVaN   98 (167)
                      +++||||++|..+.
T Consensus       332 l~~spdg~~l~sgs  345 (354)
T 2pbi_B          332 LRVSPDGTAFCSGS  345 (354)
T ss_dssp             EEECTTSSCEEEEE
T ss_pred             EEECCCCCEEEEEc
Confidence            89999999988876

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=94.96  E-value=0.18  Score=37.90  Aligned_cols=37  Identities=11%  Similarity=0.119  Sum_probs=27.0

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEE
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQI   44 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v   44 (167)
                      ..++.+.+|++++ | +++-..+.|+.||+..   .+.+.++
T Consensus       185 ~~i~~~~~~~~~~-~-~~~~~dg~i~i~d~~~---~~~~~~~  221 (313)
T 3odt_A          185 DVVRHLAVVDDGH-F-ISCSNDGLIKLVDMHT---GDVLRTY  221 (313)
T ss_dssp             SCEEEEEEEETTE-E-EEEETTSEEEEEETTT---CCEEEEE
T ss_pred             ccEEEEEEcCCCe-E-EEccCCCeEEEEECCc---hhhhhhh
Confidence            4578999999999 3 4555688999999875   4444444

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=94.94  E-value=0.045  Score=46.92  Aligned_cols=31  Identities=13%  Similarity=-0.042  Sum_probs=24.2

Q ss_pred             CceeEEEEecCCCEEEEEeCCCC--cEEEEeccC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHG--DIRQYNIED   34 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg--~I~qyDIsd   34 (167)
                      +.+..+.+|||||+||.|.. .+  .|+.||+..
T Consensus       195 ~~~~~~~~SpDG~~l~~~~~-~~~~~i~~~d~~~  227 (582)
T 3o4h_A          195 GSFSSASISPGMKVTAGLET-AREARLVTVDPRD  227 (582)
T ss_dssp             CEEEEEEECTTSCEEEEEEC-SSCEEEEEECTTT
T ss_pred             CccccceECCCCCEEEEccC-CCeeEEEEEcCCC
Confidence            34678999999999996554 55  799998763

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=94.92  E-value=0.36  Score=38.36  Aligned_cols=30  Identities=10%  Similarity=0.159  Sum_probs=24.0

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      -+..|.+|||+++|..+.+ .+.|+.||+..
T Consensus        60 ~v~~v~~sp~~~~las~s~-D~~v~iw~~~~   89 (330)
T 2hes_X           60 AIRSVAWRPHTSLLAAGSF-DSTVSIWAKEE   89 (330)
T ss_dssp             CEEEEEECTTSSEEEEEET-TSCEEEEEC--
T ss_pred             CEEEEEECCCCCEEEEEeC-CCcEEEEEccc
Confidence            4788999999999877764 78999999864

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=94.91  E-value=0.074  Score=45.27  Aligned_cols=62  Identities=15%  Similarity=0.081  Sum_probs=43.6

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -+.+|..||++..+++|+-..|.|+.||+...   +..-. ..+                              ......
T Consensus       151 ~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~---~~~~~-~~~------------------------------~~~~v~  196 (434)
T 2oit_A          151 MVIDMKWNPTVPSMVAVCLADGSIAVLQVTET---VKVCA-TLP------------------------------STVAVT  196 (434)
T ss_dssp             SEEEEEECSSCTTEEEEEETTSCEEEEEESSS---EEEEE-EEC------------------------------GGGCEE
T ss_pred             ceEEEEECCCCCCEEEEEECCCeEEEEEcCCC---cceee-ccC------------------------------CCCcee
Confidence            47899999996666677767899999998752   22111 111                              011278


Q ss_pred             eEEEccCCCEEEEEeC
Q 031020           84 MIQLSLDGKRLYVTNS   99 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNs   99 (167)
                      .+++||||++|++++.
T Consensus       197 ~v~wspdg~~lasgs~  212 (434)
T 2oit_A          197 SVCWSPKGKQLAVGKQ  212 (434)
T ss_dssp             EEEECTTSSCEEEEET
T ss_pred             EEEEcCCCCEEEEEcC
Confidence            8999999999999874

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=94.90  E-value=0.39  Score=36.32  Aligned_cols=56  Identities=9%  Similarity=-0.019  Sum_probs=38.9

Q ss_pred             EEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEE
Q 031020            8 FLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQL   87 (167)
Q Consensus         8 I~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~L   87 (167)
                      |.-|+++ .|-|+.  .+.|+.||+..   .++...+...+                             ..+.-..+++
T Consensus        31 l~WS~~~-~lAvg~--D~tV~iWd~~t---g~~~~~~~~~~-----------------------------~~~~V~~v~~   75 (318)
T 4ggc_A           31 VDWSSGN-VLAVAL--DNSVYLWSASS---GDILQLLQMEQ-----------------------------PGEYISSVAW   75 (318)
T ss_dssp             EEECTTS-EEEEEE--TTEEEEEETTT---CCEEEEEECCS-----------------------------TTCCEEEEEE
T ss_pred             EEECCCC-EEEEEe--CCEEEEEECCC---CCEEEEEEecC-----------------------------CCCeEEEEEE
Confidence            6789886 676664  78999999764   55555554333                             0111467889


Q ss_pred             ccCCCEEEEEe
Q 031020           88 SLDGKRLYVTN   98 (167)
Q Consensus        88 S~DGkrLyVaN   98 (167)
                      +++|++|..+.
T Consensus        76 ~~~~~~l~sgs   86 (318)
T 4ggc_A           76 IKEGNYLAVGT   86 (318)
T ss_dssp             CTTSSEEEEEE
T ss_pred             CCCCCEEEEEE
Confidence            99999998876

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.86  E-value=0.086  Score=45.44  Aligned_cols=65  Identities=18%  Similarity=0.124  Sum_probs=43.1

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      +..|++.+||+ |||+.+..|.|+.++-.+ .....+..++                       + ....|   .++|-.
T Consensus        34 P~~ia~~pdG~-llVter~~G~I~~v~~~~-g~~~~v~~~~-----------------------~-v~~~g---~~GllG   84 (347)
T 3das_A           34 PWGLAPLPGGD-LLVSSRDEATITRVDAKT-GRKTELGEVP-----------------------G-VSPSG---EGGLLG   84 (347)
T ss_dssp             EEEEEECTTSC-EEEEETTTCEEEEECTTT-CCEEEEEECT-----------------------T-CCCBT---TBSEEE
T ss_pred             ceEEEEcCCCc-EEEEEecCCEEEEEECCC-CcEeeecccC-----------------------c-eeecC---CCCcee
Confidence            56899999998 889999889999887332 1111121111                       0 01111   346999


Q ss_pred             EEEccC---CCEEEEEe
Q 031020           85 IQLSLD---GKRLYVTN   98 (167)
Q Consensus        85 ~~LS~D---GkrLyVaN   98 (167)
                      |+++||   .++|||+.
T Consensus        85 ia~~Pdf~~~g~lYv~y  101 (347)
T 3das_A           85 IALSPDYASDHMVYAYF  101 (347)
T ss_dssp             EEECTTHHHHCEEEEEE
T ss_pred             eEeccccccCCEEEEEE
Confidence            999997   78999975

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=94.85  E-value=0.038  Score=45.68  Aligned_cols=31  Identities=3%  Similarity=0.155  Sum_probs=27.0

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      -++.|.+||+++.+.+++-..+.|+.||+..
T Consensus       252 ~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~  282 (435)
T 4e54_B          252 KVTHVALNPCCDWFLATASVDQTVKIWDLRQ  282 (435)
T ss_dssp             CEEEEEECTTCSSEEEEEETTSBCCEEETTT
T ss_pred             eEEeeeecCCCceEEEEecCcceeeEEeccc
Confidence            4788999999998888887889999999875

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=94.84  E-value=0.36  Score=38.35  Aligned_cols=63  Identities=6%  Similarity=-0.011  Sum_probs=42.4

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCC-CCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPK-NPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~-~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      -+..+.+|||+++|..+. ..+.|+.||+.... ..+....+.  +                             ..+.-
T Consensus       109 ~V~~v~~sp~g~~las~s-~D~~v~iwd~~~~~~~~~~~~~~~--~-----------------------------h~~~v  156 (330)
T 2hes_X          109 EVKGVAWSNDGYYLATCS-RDKSVWIWETDESGEEYECISVLQ--E-----------------------------HSQDV  156 (330)
T ss_dssp             CEEEEEECTTSCEEEEEE-TTSCEEEEECCTTCCCCEEEEEEC--C-----------------------------CSSCE
T ss_pred             cEEEEEECCCCCEEEEEe-CCCEEEEEeccCCCCCeEEEEEec--c-----------------------------CCCce
Confidence            467899999999986655 57899999995432 223332221  1                             11226


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      ..++++|||++|..+.
T Consensus       157 ~~v~~~p~~~~l~s~s  172 (330)
T 2hes_X          157 KHVIWHPSEALLASSS  172 (330)
T ss_dssp             EEEEECSSSSEEEEEE
T ss_pred             EEEEECCCCCEEEEEc
Confidence            6788999999887765

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=94.84  E-value=0.11  Score=41.77  Aligned_cols=27  Identities=7%  Similarity=0.123  Sum_probs=23.1

Q ss_pred             EEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            7 DFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         7 dI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      .+.+|+|+++| ++.-..|.|+.||+..
T Consensus       347 ~~~~s~~~~~l-~s~s~dg~v~iwd~~~  373 (447)
T 3dw8_B          347 ECCWNGSDSVV-MTGSYNNFFRMFDRNT  373 (447)
T ss_dssp             CEEECTTSSEE-EEECSTTEEEEEETTT
T ss_pred             EEEECCCCCEE-EEeccCCEEEEEEcCC
Confidence            48999999999 5566789999999875

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=94.80  E-value=0.41  Score=35.84  Aligned_cols=32  Identities=6%  Similarity=0.108  Sum_probs=26.0

Q ss_pred             CceeEEEEec--CCCEEEEEeCCCCcEEEEeccCC
Q 031020            3 GLITDFLISL--DDRFLYFSNWLHGDIRQYNIEDP   35 (167)
Q Consensus         3 ~l~tdI~IS~--DdRfLYVSnw~hg~I~qyDIsdp   35 (167)
                      .-++.|.+++  |+++|+.+.. .+.|++||+...
T Consensus        58 ~~v~~~~~~~~~d~~~l~s~~~-dg~v~vwd~~~~   91 (351)
T 3f3f_A           58 SSIVAIDWASPEYGRIIASASY-DKTVKLWEEDPD   91 (351)
T ss_dssp             SCEEEEEECCGGGCSEEEEEET-TSCEEEEEECTT
T ss_pred             CcEEEEEEcCCCCCCEEEEEcC-CCeEEEEecCCC
Confidence            3578999999  6888877765 789999999863

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=94.80  E-value=0.21  Score=39.48  Aligned_cols=66  Identities=15%  Similarity=0.124  Sum_probs=42.2

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEE-eCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIW-VGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~-~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      +-++.+.+|+++..+.+|+-..+.|+.|++.... .+..-.+. .-|                             ..+.
T Consensus        18 ~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~-~~~~~~~~~~~~-----------------------------h~~~   67 (319)
T 3frx_A           18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDD-QKFGVPVRSFKG-----------------------------HSHI   67 (319)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEET-TEEEEEEEEEEC-----------------------------CSSC
T ss_pred             ceEEEEEccCCCccEEEEecCCccEEEecCCCCC-ccccccceEEeC-----------------------------Cccc
Confidence            3478899999875445666678999999987422 11110110 111                             1123


Q ss_pred             CceEEEccCCCEEEEEe
Q 031020           82 PQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaN   98 (167)
                      -..+++|+||++|+.+.
T Consensus        68 v~~~~~s~dg~~l~s~s   84 (319)
T 3frx_A           68 VQDCTLTADGAYALSAS   84 (319)
T ss_dssp             EEEEEECTTSSEEEEEE
T ss_pred             EEEEEECCCCCEEEEEe
Confidence            56788999999998876

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=94.77  E-value=0.22  Score=43.87  Aligned_cols=66  Identities=14%  Similarity=0.134  Sum_probs=45.2

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCe-EEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPV-LTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pk-lvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      ..++.|.+|+++.-+.+|+-..+.|+.||++...... ...+... |                             ..+.
T Consensus       383 ~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~-~-----------------------------h~~~  432 (694)
T 3dm0_A          383 DMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT-G-----------------------------HSHF  432 (694)
T ss_dssp             SCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE-C-----------------------------CSSC
T ss_pred             ceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec-C-----------------------------CCCc
Confidence            3578999999987777888789999999998533221 1111111 2                             1123


Q ss_pred             CceEEEccCCCEEEEEe
Q 031020           82 PQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaN   98 (167)
                      -..+++|+||++|..+.
T Consensus       433 v~~v~~s~~g~~l~sgs  449 (694)
T 3dm0_A          433 VEDVVLSSDGQFALSGS  449 (694)
T ss_dssp             EEEEEECTTSSEEEEEE
T ss_pred             EEEEEECCCCCEEEEEe
Confidence            56789999999998876

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=94.69  E-value=0.25  Score=40.00  Aligned_cols=63  Identities=14%  Similarity=0.066  Sum_probs=43.5

Q ss_pred             CceeEEEEec-CCCEEEEEeCCCCcEEEEeccCCCC---CeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccC
Q 031020            3 GLITDFLISL-DDRFLYFSNWLHGDIRQYNIEDPKN---PVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRL   78 (167)
Q Consensus         3 ~l~tdI~IS~-DdRfLYVSnw~hg~I~qyDIsdp~~---pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~   78 (167)
                      +-++.|.+|+ |+++|..+. ..+.|++||+.....   .+..-...                                .
T Consensus        64 ~~V~~~~~s~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~--------------------------------h  110 (437)
T 3gre_A           64 NSITSSAVSPGETPYLITGS-DQGVIKIWNLKEIIVGEVYSSSLTYD--------------------------------C  110 (437)
T ss_dssp             SCEEEEEEECSSSCEEEEEE-TTSEEEEEEHHHHHTTCCCSCSEEEE--------------------------------C
T ss_pred             CceEEEEECCCCCCEEEEec-CCceEEEeECcccccCcccceeeecc--------------------------------C
Confidence            4689999999 999886655 678999999875111   11111111                                1


Q ss_pred             CCCCceEEEccCCCEEEEEe
Q 031020           79 RGGPQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        79 ~g~P~~~~LS~DGkrLyVaN   98 (167)
                      .+....++++++|++|+++.
T Consensus       111 ~~~v~~~~~~~~~~~l~s~s  130 (437)
T 3gre_A          111 SSTVTQITMIPNFDAFAVSS  130 (437)
T ss_dssp             SSCEEEEEECTTSSEEEEEE
T ss_pred             CCCEEEEEEeCCCCEEEEEe
Confidence            12367899999999999887

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=94.62  E-value=0.16  Score=44.74  Aligned_cols=60  Identities=10%  Similarity=0.086  Sum_probs=42.9

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      +.++.|.+|+|+++|..++ ..+.|+.||+..   .+.+.++...                                ...
T Consensus       562 ~~v~~v~~spdg~~l~sg~-~Dg~i~iwd~~~---~~~~~~~~~~--------------------------------~~v  605 (694)
T 3dm0_A          562 GYVSTVAVSPDGSLCASGG-KDGVVLLWDLAE---GKKLYSLEAN--------------------------------SVI  605 (694)
T ss_dssp             SCEEEEEECTTSSEEEEEE-TTSBCEEEETTT---TEEEECCBCS--------------------------------SCE
T ss_pred             CCEEEEEEeCCCCEEEEEe-CCCeEEEEECCC---CceEEEecCC--------------------------------CcE
Confidence            4578999999999886555 588999999875   3333222111                                125


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      ..+++|+||++|.++.
T Consensus       606 ~~~~~sp~~~~l~~~~  621 (694)
T 3dm0_A          606 HALCFSPNRYWLCAAT  621 (694)
T ss_dssp             EEEEECSSSSEEEEEE
T ss_pred             EEEEEcCCCcEEEEEc
Confidence            6789999999988776

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=94.51  E-value=0.4  Score=39.51  Aligned_cols=60  Identities=12%  Similarity=0.157  Sum_probs=43.4

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .++.+.++||+++|+.+. .++.|+.||+..   .+.+..+. |-                              ...-+
T Consensus       194 ~V~~v~~~p~~~~l~s~s-~D~~i~~wd~~~---~~~~~~~~-~h------------------------------~~~v~  238 (410)
T 1vyh_C          194 NVSSVSIMPNGDHIVSAS-RDKTIKMWEVQT---GYCVKTFT-GH------------------------------REWVR  238 (410)
T ss_dssp             CEEEEEECSSSSEEEEEE-TTSEEEEEETTT---CCEEEEEE-CC------------------------------SSCEE
T ss_pred             CEEEEEEeCCCCEEEEEe-CCCeEEEEECCC---CcEEEEEe-CC------------------------------CccEE
Confidence            578899999999986665 578999999875   33333322 11                              12367


Q ss_pred             eEEEccCCCEEEEEe
Q 031020           84 MIQLSLDGKRLYVTN   98 (167)
Q Consensus        84 ~~~LS~DGkrLyVaN   98 (167)
                      .+.+++||++|+.+.
T Consensus       239 ~~~~~~~g~~l~s~s  253 (410)
T 1vyh_C          239 MVRPNQDGTLIASCS  253 (410)
T ss_dssp             EEEECTTSSEEEEEE
T ss_pred             EEEECCCCCEEEEEc
Confidence            788999999888876

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=94.49  E-value=0.073  Score=41.58  Aligned_cols=18  Identities=22%  Similarity=0.268  Sum_probs=14.9

Q ss_pred             eeEEEEecCCCEEEEEeC
Q 031020            5 ITDFLISLDDRFLYFSNW   22 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw   22 (167)
                      +..+..|||+++|+++..
T Consensus       106 ~~~~~wspdg~~l~~~~~  123 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGF  123 (347)
T ss_dssp             EEEEEECTTSSEEEEEEE
T ss_pred             ccceeECCCCCEEEEEEc
Confidence            578899999998888753

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=94.46  E-value=0.16  Score=46.55  Aligned_cols=30  Identities=20%  Similarity=0.289  Sum_probs=21.8

Q ss_pred             eeEEEEe-cCCCEEEEEeCCCCc----EEEEeccC
Q 031020            5 ITDFLIS-LDDRFLYFSNWLHGD----IRQYNIED   34 (167)
Q Consensus         5 ~tdI~IS-~DdRfLYVSnw~hg~----I~qyDIsd   34 (167)
                      +....+| |||++|.++....|+    |+++|+..
T Consensus       176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~  210 (751)
T 2xe4_A          176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISD  210 (751)
T ss_dssp             EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTC
T ss_pred             EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCC
Confidence            5678999 999977655544333    88888764

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=94.31  E-value=0.17  Score=41.56  Aligned_cols=56  Identities=14%  Similarity=-0.031  Sum_probs=37.8

Q ss_pred             EEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEEc
Q 031020            9 LISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLS   88 (167)
Q Consensus         9 ~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS   88 (167)
                      ...+.++.+.++.-.+|.|+.||++..   +.......++                               ..-+.+++|
T Consensus       323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~~---~~~~~~~~~~-------------------------------~~V~svafs  368 (393)
T 4gq1_A          323 PHPRYMDYFATAHSQHGLIQLINTYEK---DSNSIPIQLG-------------------------------MPIVDFCWH  368 (393)
T ss_dssp             ECSSCTTEEEEEETTTTEEEEEETTCT---TCCEEEEECS-------------------------------SCEEEEEEC
T ss_pred             EccCCCCEEEEEECCCCEEEEEECCCC---cEEEEecCCC-------------------------------CcEEEEEEc
Confidence            334556677778777899999998753   2222222111                               115789999


Q ss_pred             cCCCEEEEEe
Q 031020           89 LDGKRLYVTN   98 (167)
Q Consensus        89 ~DGkrLyVaN   98 (167)
                      |||++|.++.
T Consensus       369 pdG~~LA~as  378 (393)
T 4gq1_A          369 QDGSHLAIAT  378 (393)
T ss_dssp             TTSSEEEEEE
T ss_pred             CCCCEEEEEe
Confidence            9999999987

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=94.31  E-value=0.21  Score=40.44  Aligned_cols=42  Identities=21%  Similarity=0.240  Sum_probs=32.0

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCc
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGG   48 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG   48 (167)
                      ..++.+.+|+|+++|+.+.. .|.|+.||+..   .+.+..+..++
T Consensus       215 ~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~---~~~~~~~~~~~  256 (437)
T 3gre_A          215 GAVSSICIDEECCVLILGTT-RGIIDIWDIRF---NVLIRSWSFGD  256 (437)
T ss_dssp             CCEEEEEECTTSCEEEEEET-TSCEEEEETTT---TEEEEEEBCTT
T ss_pred             CceEEEEECCCCCEEEEEcC-CCeEEEEEcCC---ccEEEEEecCC
Confidence            45789999999999987774 68999999874   55665554443

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=94.26  E-value=0.54  Score=36.63  Aligned_cols=66  Identities=14%  Similarity=0.055  Sum_probs=42.2

Q ss_pred             ceeEEEEecCC--CEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            4 LITDFLISLDD--RFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         4 l~tdI~IS~Dd--RfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      .+.+|.+|||+  ..+.+|+-..+.|+.||+.....+... ++....                            ...+.
T Consensus       206 ~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~-~~~~~~----------------------------~~~~~  256 (297)
T 2pm7_B          206 WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKK-TLLKEE----------------------------KFPDV  256 (297)
T ss_dssp             CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEE-EESSSS----------------------------CCSSC
T ss_pred             ceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccce-eeeecc----------------------------cCCCc
Confidence            47889999996  345567667899999998753222111 110000                            11223


Q ss_pred             CceEEEccCCCEEEEEe
Q 031020           82 PQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaN   98 (167)
                      -..+++||||++|..+.
T Consensus       257 v~~~~~s~~g~~las~~  273 (297)
T 2pm7_B          257 LWRASWSLSGNVLALSG  273 (297)
T ss_dssp             EEEEEECSSSCCEEEEE
T ss_pred             EEEEEECCCCCEEEEEc
Confidence            56788999999998877

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=94.21  E-value=1.1  Score=34.54  Aligned_cols=32  Identities=3%  Similarity=-0.036  Sum_probs=25.3

Q ss_pred             CceeEEEEec-------------CCCEEEEEeCCCCcEEEEeccCC
Q 031020            3 GLITDFLISL-------------DDRFLYFSNWLHGDIRQYNIEDP   35 (167)
Q Consensus         3 ~l~tdI~IS~-------------DdRfLYVSnw~hg~I~qyDIsdp   35 (167)
                      .-+..+.++|             |+++|+++. ..+.|+.||+...
T Consensus       148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~  192 (379)
T 3jrp_A          148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSD  192 (379)
T ss_dssp             TCEEEEEECCCC----------CTTCEEEEEE-TTSCEEEEEEETT
T ss_pred             CceEEEEEcCccccccccccCCCCCCEEEEEe-CCCeEEEEEecCC
Confidence            3467888999             688887766 4789999999853

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=94.19  E-value=0.22  Score=40.23  Aligned_cols=32  Identities=16%  Similarity=0.087  Sum_probs=27.0

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDP   35 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp   35 (167)
                      +-+..+.+|||+++|..+. ..+.|+.||+.++
T Consensus       241 ~~v~~~~~s~~~~~l~s~s-~d~~v~iw~~~~~  272 (355)
T 3vu4_A          241 ADVVDMKWSTDGSKLAVVS-DKWTLHVFEIFND  272 (355)
T ss_dssp             SCEEEEEECTTSCEEEEEE-TTCEEEEEESSCC
T ss_pred             CcEEEEEECCCCCEEEEEE-CCCEEEEEEccCC
Confidence            4578999999999997666 4689999999864

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=93.86  E-value=0.44  Score=44.62  Aligned_cols=83  Identities=11%  Similarity=0.079  Sum_probs=53.5

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      +-++.+++|||| +|-++. .++.|+.||+..   ++++-+..+-+ +.                      +|  ..++.
T Consensus       576 ~~V~svafSpdG-~lAsgs-~D~tv~lwd~~~---~~~~~~~~~~~-~~----------------------~g--h~~~V  625 (902)
T 2oaj_A          576 GKTSAINNSNIG-FVGIAY-AAGSLMLIDRRG---PAIIYMENIRE-IS----------------------GA--QSACV  625 (902)
T ss_dssp             CSEEEEEECBTS-EEEEEE-TTSEEEEEETTT---TEEEEEEEGGG-TC----------------------SS--CCCCE
T ss_pred             CcEEEEEecCCc-EEEEEe-CCCcEEEEECCC---CeEEEEeehhH-hc----------------------cc--cccce
Confidence            457899999999 775555 578999999765   55543212110 00                      01  13447


Q ss_pred             ceEEEc-----cCC---CEEEEEeCCCccccccccccccccCcEEEEEEeeCC-CCCe
Q 031020           83 QMIQLS-----LDG---KRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSE-KGGM  131 (167)
Q Consensus        83 ~~~~LS-----~DG---krLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~-~G~l  131 (167)
                      ..+++|     +||   ++|+++.                +.+++...|++|. +|+.
T Consensus       626 ~sv~Fs~~~~~~Dg~~~~~l~sgs----------------~D~tv~~wd~~p~~~g~~  667 (902)
T 2oaj_A          626 TCIEFVIMEYGDDGYSSILMVCGT----------------DMGEVITYKILPASGGKF  667 (902)
T ss_dssp             EEEEEEEEECTTSSSEEEEEEEEE----------------TTSEEEEEEEEECGGGCE
T ss_pred             EEEEEEEEecCCCCCcceEEEEEe----------------cCCcEEEEEEecCCCCcE
Confidence            889999     886   7888776                2456666888664 5553

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=93.78  E-value=0.65  Score=37.95  Aligned_cols=30  Identities=7%  Similarity=0.292  Sum_probs=25.7

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      .++.|.+|+||++|.+.. ..+.|+.||+..
T Consensus       149 ~V~sv~fspdg~~lasgs-~Dg~v~iWd~~~  178 (420)
T 4gga_A          149 YISSVAWIKEGNYLAVGT-SSAEVQLWDVQQ  178 (420)
T ss_dssp             CEEEEEECTTSSEEEEEE-TTSCEEEEETTT
T ss_pred             cEEEEEECCCCCEEEEEE-CCCeEEEEEcCC
Confidence            589999999999997665 578999999875

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=93.78  E-value=0.25  Score=40.55  Aligned_cols=30  Identities=13%  Similarity=0.153  Sum_probs=24.3

Q ss_pred             ceeEEEEec--------CCCEEEEEeCCCCcEEEEeccC
Q 031020            4 LITDFLISL--------DDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         4 l~tdI~IS~--------DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      .+.+|.+||        |+++| +|+-..+.|++||+..
T Consensus       138 ~v~~v~~~p~~~~~~~~d~~~l-as~s~D~tv~~Wd~~~  175 (393)
T 4gq1_A          138 FVNDIDIADVYSADNRLAEQVI-ASVGDDCTLIIWRLTD  175 (393)
T ss_dssp             CEEEEEEEEEECTTCSEEEEEE-EEEETTSEEEEEEEET
T ss_pred             ceEEEEEccccccccCCCCCEE-EEEECCCeEEEEECCC
Confidence            477899987        77766 6776789999999875

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=93.77  E-value=0.29  Score=40.33  Aligned_cols=61  Identities=8%  Similarity=0.151  Sum_probs=41.9

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .-+.+|.+|+|+++|..+. ..+.|+.||+..   .+....+.  |                             ..+.-
T Consensus       151 ~~V~~v~~~~~~~~l~sgs-~D~~i~iwd~~~---~~~~~~~~--~-----------------------------h~~~V  195 (410)
T 1vyh_C          151 DSVQDISFDHSGKLLASCS-ADMTIKLWDFQG---FECIRTMH--G-----------------------------HDHNV  195 (410)
T ss_dssp             SCEEEEEECTTSSEEEEEE-TTSCCCEEETTS---SCEEECCC--C-----------------------------CSSCE
T ss_pred             CcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCC---CceeEEEc--C-----------------------------CCCCE
Confidence            3578999999999886555 578999999864   22222211  1                             01225


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      ..++++|+|++|+.+.
T Consensus       196 ~~v~~~p~~~~l~s~s  211 (410)
T 1vyh_C          196 SSVSIMPNGDHIVSAS  211 (410)
T ss_dssp             EEEEECSSSSEEEEEE
T ss_pred             EEEEEeCCCCEEEEEe
Confidence            6788999999988775

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=93.69  E-value=0.35  Score=43.03  Aligned_cols=32  Identities=13%  Similarity=0.128  Sum_probs=25.2

Q ss_pred             CceeEEEEecCCCEEEEEeC-C---CCcEEEEeccC
Q 031020            3 GLITDFLISLDDRFLYFSNW-L---HGDIRQYNIED   34 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw-~---hg~I~qyDIsd   34 (167)
                      .....+.+|+|||+|+++.+ .   ..+|+.+|+..
T Consensus       233 ~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~  268 (710)
T 2xdw_A          233 KWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ  268 (710)
T ss_dssp             TCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred             eEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence            34678899999999988765 2   46899999874

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=93.63  E-value=0.29  Score=43.32  Aligned_cols=41  Identities=20%  Similarity=0.229  Sum_probs=27.0

Q ss_pred             CceEEEccCCCEEEEEeCCCcc-----ccccccccccccCcEEEEEEeeC
Q 031020           82 PQMIQLSLDGKRLYVTNSLFSA-----WDCQFYPELKEKGSHMLQIDVNS  126 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaNsl~s~-----wD~Qfyp~~~~~g~~~~~~dvD~  126 (167)
                      -..|.++||| +|||+.-=-..     -+.|   ++-...+.|+|||+|.
T Consensus       141 g~~l~fgpDG-~LYv~~Gd~~~~~~~~~~~q---~~~~~~GkIlRi~~dg  186 (463)
T 2wg3_C          141 GGQLLFGPDG-FLYIILGDGMITLDDMEEMD---GLSDFTGSVLRLDVDT  186 (463)
T ss_dssp             EEEEEECTTS-CEEEEECCTTCCHHHHHHCT---TCCSCTTEEEEEBCCC
T ss_pred             CCcEeECCCC-cEEEEeCCCCCCCCcccccc---CcCCCCeeEEEEECCC
Confidence            5789999999 69998642211     0122   2223467899999986

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=93.39  E-value=0.45  Score=44.31  Aligned_cols=30  Identities=13%  Similarity=0.173  Sum_probs=26.8

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      .+.++++||||++|++++. .|.|+.||+.+
T Consensus       131 sv~svafSPDG~~LAsgs~-DGtVkIWd~~~  160 (588)
T 2j04_A          131 TYHCFEWNPIESSIVVGNE-DGELQFFSIRK  160 (588)
T ss_dssp             CEEEEEECSSSSCEEEEET-TSEEEEEECCC
T ss_pred             cEEEEEEcCCCCEEEEEcC-CCEEEEEECCC
Confidence            3678999999999999985 78999999886

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=93.33  E-value=1.1  Score=34.89  Aligned_cols=31  Identities=13%  Similarity=0.259  Sum_probs=26.0

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      ..+.++++|+|+++|..+. ..+.|++||+..
T Consensus        10 ~~V~~~~~s~~g~~las~s-~D~~v~iw~~~~   40 (297)
T 2pm7_B           10 EMIHDAVMDYYGKRMATCS-SDKTIKIFEVEG   40 (297)
T ss_dssp             SCEEEEEECTTSSEEEEEE-TTSCEEEEEBCS
T ss_pred             CceEEEEECCCCCEEEEEe-CCCEEEEEecCC
Confidence            3578999999999997666 578999999874

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=93.30  E-value=0.36  Score=43.25  Aligned_cols=31  Identities=10%  Similarity=0.217  Sum_probs=22.9

Q ss_pred             ceeEEEEecCCC-EEEEEeCCCC--cEEEEeccC
Q 031020            4 LITDFLISLDDR-FLYFSNWLHG--DIRQYNIED   34 (167)
Q Consensus         4 l~tdI~IS~DdR-fLYVSnw~hg--~I~qyDIsd   34 (167)
                      .++.+..||||| .++++++..+  .|+.+|+..
T Consensus       261 ~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t  294 (740)
T 4a5s_A          261 YLCDVTWATQERISLQWLRRIQNYSVMDICDYDE  294 (740)
T ss_dssp             EEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred             EEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence            467889999999 4556777654  578888764

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=93.19  E-value=0.46  Score=42.22  Aligned_cols=30  Identities=10%  Similarity=0.268  Sum_probs=22.5

Q ss_pred             eeEEEEecCCCEEEEEeCCC----CcEEEEeccC
Q 031020            5 ITDFLISLDDRFLYFSNWLH----GDIRQYNIED   34 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~h----g~I~qyDIsd   34 (167)
                      +..+.+||||++|.++.-..    ..|+++|+..
T Consensus       123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t  156 (695)
T 2bkl_A          123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS  156 (695)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred             EEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence            67889999999886554433    3699999764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=93.07  E-value=0.89  Score=37.41  Aligned_cols=30  Identities=17%  Similarity=0.307  Sum_probs=23.3

Q ss_pred             ceeEEEEec-CCCEEEEEeCCCCcEEEEeccC
Q 031020            4 LITDFLISL-DDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         4 l~tdI~IS~-DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      -+++|.+|| |+++|+ |+-..+.|++||+..
T Consensus       166 ~V~~l~f~p~~~~~l~-s~s~D~~v~iwd~~~  196 (435)
T 4e54_B          166 SITGLKFNPLNTNQFY-ASSMEGTTRLQDFKG  196 (435)
T ss_dssp             CCCEEEECSSCTTEEE-EECSSSCEEEEETTS
T ss_pred             CEEEEEEeCCCCCEEE-EEeCCCEEEEeeccC
Confidence            478999998 667775 555678999999863

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=93.02  E-value=0.54  Score=42.19  Aligned_cols=31  Identities=10%  Similarity=0.076  Sum_probs=24.9

Q ss_pred             ceeEEEEecCCCEEEEEeCC----CCcEEEEeccC
Q 031020            4 LITDFLISLDDRFLYFSNWL----HGDIRQYNIED   34 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~----hg~I~qyDIsd   34 (167)
                      ....+.+|+|||+|+++.+.    ..+|+.+|+..
T Consensus       269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~  303 (741)
T 1yr2_A          269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTN  303 (741)
T ss_dssp             CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEET
T ss_pred             EEEEEEECCCCCEEEEEEEccCCCcceEEEEECCC
Confidence            56788999999999887763    45888888775

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=92.73  E-value=1.2  Score=36.33  Aligned_cols=62  Identities=13%  Similarity=0.087  Sum_probs=41.4

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      ++.+.+  ++++|++++ ..|.|++||+.+   .+++..+..-.                          .....+....
T Consensus       365 v~~~~~--~~~~l~s~~-~dg~v~iwd~~~---~~~~~~~~~~~--------------------------~~~~~~~v~~  412 (445)
T 2ovr_B          365 VTCLQF--NKNFVITSS-DDGTVKLWDLKT---GEFIRNLVTLE--------------------------SGGSGGVVWR  412 (445)
T ss_dssp             EEEEEE--CSSEEEEEE-TTSEEEEEETTT---CCEEEEEEECT--------------------------TGGGTCEEEE
T ss_pred             EEEEEE--CCCEEEEEe-CCCeEEEEECCC---Cceeeeeeccc--------------------------cCCCCceEEE
Confidence            455555  577876665 578999999775   55665553211                          0012234788


Q ss_pred             EEEccCCCEEEEEe
Q 031020           85 IQLSLDGKRLYVTN   98 (167)
Q Consensus        85 ~~LS~DGkrLyVaN   98 (167)
                      +++|++|+.|.++.
T Consensus       413 ~~~s~~~~~la~~~  426 (445)
T 2ovr_B          413 IRASNTKLVCAVGS  426 (445)
T ss_dssp             EEECSSEEEEEEEC
T ss_pred             EEecCCEEEEEEcc
Confidence            99999999999988

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=92.72  E-value=2.6  Score=37.72  Aligned_cols=30  Identities=20%  Similarity=0.350  Sum_probs=21.5

Q ss_pred             eeEEEEecCCCEEEE-EeCCC---CcEEEEeccC
Q 031020            5 ITDFLISLDDRFLYF-SNWLH---GDIRQYNIED   34 (167)
Q Consensus         5 ~tdI~IS~DdRfLYV-Snw~h---g~I~qyDIsd   34 (167)
                      +..+.+|||||+|.. +....   -.|+++|+..
T Consensus       131 l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~t  164 (693)
T 3iuj_A          131 LDQLSFSRDGRILAYSLSLAGSDWREIHLMDVES  164 (693)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCCEEEEEEEETTT
T ss_pred             EEEEEECCCCCEEEEEEecCCCceEEEEEEECCC
Confidence            567899999997754 44322   3688999875

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=92.66  E-value=0.62  Score=35.16  Aligned_cols=37  Identities=5%  Similarity=0.208  Sum_probs=28.5

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEE
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQI   44 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v   44 (167)
                      .++.+.+|+|+++|..+. ..+.|+.||+..   .+.....
T Consensus        69 ~V~~v~~~~~~~~l~sgs-~Dg~v~iw~~~~---~~~~~~~  105 (318)
T 4ggc_A           69 YISSVAWIKEGNYLAVGT-SSAEVQLWDVQQ---QKRLRNM  105 (318)
T ss_dssp             CEEEEEECTTSSEEEEEE-TTSEEEEEETTT---TEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEE-CCCcEEEeecCC---ceeEEEe
Confidence            478999999999996555 578999999875   4554443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=92.53  E-value=1.4  Score=39.44  Aligned_cols=30  Identities=23%  Similarity=0.329  Sum_probs=22.1

Q ss_pred             eeEEEEecCCCEEEEEeCCCC----cEEEEeccC
Q 031020            5 ITDFLISLDDRFLYFSNWLHG----DIRQYNIED   34 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg----~I~qyDIsd   34 (167)
                      +..+.+||||++|.++.-..|    .|+++|+..
T Consensus       165 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~t  198 (741)
T 1yr2_A          165 LDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVAD  198 (741)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSEEEEEEEETTT
T ss_pred             EEeEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            567899999998865543333    499999874

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=92.48  E-value=0.34  Score=39.53  Aligned_cols=29  Identities=17%  Similarity=0.240  Sum_probs=22.3

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      .++.+.+++|+++|.+++  +|.|..||+..
T Consensus       393 ~~~~~~~~~~~~~l~~~~--dg~i~iwd~~~  421 (464)
T 3v7d_B          393 LSAITTFYVSDNILVSGS--ENQFNIYNLRS  421 (464)
T ss_dssp             CCCEEEEEECSSEEEEEE--TTEEEEEETTT
T ss_pred             CccEEEEEeCCCEEEEec--CCeEEEEECCC
Confidence            345678888888887776  68888888765

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=92.14  E-value=2.5  Score=34.32  Aligned_cols=31  Identities=13%  Similarity=0.235  Sum_probs=26.0

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      .-++.+.+|+|+++|++++ ..+.|++||+..
T Consensus       311 ~~v~~~~~~~~~~~l~sg~-~dg~i~vwd~~~  341 (464)
T 3v7d_B          311 DRIYSTIYDHERKRCISAS-MDTTIRIWDLEN  341 (464)
T ss_dssp             SCEEEEEEETTTTEEEEEE-TTSCEEEEETTT
T ss_pred             CCEEEEEEcCCCCEEEEEe-CCCcEEEEECCC
Confidence            3578899999999998776 578999999864

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=91.95  E-value=0.89  Score=39.49  Aligned_cols=76  Identities=13%  Similarity=0.068  Sum_probs=51.8

Q ss_pred             ceeEEEEecCCCEEEEEeCCC-CcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWLH-GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~h-g~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .+-||++.++| -.||++-.. +.|..++   |...+++ ...+-.                   |...      -.-||
T Consensus       138 ~~nDvavD~~G-naYVt~s~~~~~I~rV~---pdG~~~~-~~~~~~-------------------~~~~------~~~G~  187 (334)
T 2p9w_A          138 GVVQSAQDRDG-NSYVAFALGMPAIARVS---ADGKTVS-TFAWES-------------------GNGG------QRPGY  187 (334)
T ss_dssp             EEEEEEECTTS-CEEEEEEESSCEEEEEC---TTSCCEE-EEEECC-------------------CCSS------SCCSC
T ss_pred             CCceeEECCCC-CEEEeCCCCCCeEEEEe---CCCCEEe-eeeecC-------------------CCcc------cccCc
Confidence            46799999998 578977667 8888777   3322232 111100                   1111      12469


Q ss_pred             ceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEee
Q 031020           83 QMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN  125 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD  125 (167)
                      .-++++|||++|+|+.               . ++.+.+||++
T Consensus       188 nGIv~~pdg~~Liv~~---------------~-~g~L~~fD~~  214 (334)
T 2p9w_A          188 SGITFDPHSNKLIAFG---------------G-PRALTAFDVS  214 (334)
T ss_dssp             SEEEEETTTTEEEEES---------------S-SSSEEEEECS
T ss_pred             ceEEEeCCCCEEEEEc---------------C-CCeEEEEcCC
Confidence            9999999999999998               4 7789999985

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=91.91  E-value=1  Score=39.51  Aligned_cols=74  Identities=18%  Similarity=0.323  Sum_probs=49.4

Q ss_pred             ceeEEEEe-c------CCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCC---Cccc
Q 031020            4 LITDFLIS-L------DDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSD---VPEV   73 (167)
Q Consensus         4 l~tdI~IS-~------DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~---~~~~   73 (167)
                      +..||+|. .      ++.|.|++.-+.+.|.+||+.+...-+    |. -..+                .|+   ...+
T Consensus       153 ~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swR----v~-~~~~----------------~pd~~~~~~i  211 (381)
T 3q6k_A          153 YFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWN----VT-HPTF----------------KAERPTKFDY  211 (381)
T ss_dssp             GEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEE----EE-CGGG----------------SCCSCEEEEE
T ss_pred             ccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEE----Ec-cCCC----------------ccccCcceEE
Confidence            57889988 2      278999999999999999998622111    11 1111                122   1334


Q ss_pred             cCccC--CCCCceEEEccC----CCEEEEEe
Q 031020           74 QGHRL--RGGPQMIQLSLD----GKRLYVTN   98 (167)
Q Consensus        74 ~g~~~--~g~P~~~~LS~D----GkrLyVaN   98 (167)
                      .|+.+  ..|---++|||+    +++||..-
T Consensus       212 ~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~p  242 (381)
T 3q6k_A          212 GGKEYEFKAGIFGITLGDRDSEGNRPAYYLA  242 (381)
T ss_dssp             TTEEEEECCCEEEEEECCCCTTSCCEEEEEE
T ss_pred             CCEEeEeccCceEEEecCCcCCCCeEEEEEE
Confidence            45443  556788999999    89999865

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=91.79  E-value=0.69  Score=38.29  Aligned_cols=26  Identities=23%  Similarity=0.588  Sum_probs=21.1

Q ss_pred             EEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            9 LISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         9 ~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      .++++++.||.+.-+...|.+.+++.
T Consensus       151 ~~~~~g~~iy~t~~g~~~Iy~~~l~g  176 (302)
T 3s25_A          151 TCNTSDRYFYYNNPKNGQLYRYDTAS  176 (302)
T ss_dssp             CSEEETTEEEEECTTTCCEEEEETTT
T ss_pred             EeeEECCEEEEEeCCCceEEEEECCC
Confidence            46889999999888778888888654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=91.67  E-value=0.9  Score=40.70  Aligned_cols=32  Identities=19%  Similarity=0.207  Sum_probs=24.9

Q ss_pred             ceeEEEEecCCCEEEEEeCCC---CcEEEEeccCC
Q 031020            4 LITDFLISLDDRFLYFSNWLH---GDIRQYNIEDP   35 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~h---g~I~qyDIsdp   35 (167)
                      ....+.+|+|+|+|+++....   ++|+.+|+.++
T Consensus       235 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~  269 (693)
T 3iuj_A          235 RYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQE  269 (693)
T ss_dssp             SEEEEEECTTSCEEEEEEESSSSCCEEEEEETTST
T ss_pred             EEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCC
Confidence            456788999999998876532   58899998764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=91.34  E-value=1.1  Score=42.03  Aligned_cols=58  Identities=10%  Similarity=0.110  Sum_probs=41.8

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -+..+.+|+ +++|..+. ..+.|++||+..   .++...+...+                                ...
T Consensus        60 ~V~~l~fsp-g~~L~S~s-~D~~v~lWd~~~---~~~~~~~~~~~--------------------------------~V~  102 (902)
T 2oaj_A           60 AIKEMRFVK-GIYLVVIN-AKDTVYVLSLYS---QKVLTTVFVPG--------------------------------KIT  102 (902)
T ss_dssp             CEEEEEEET-TTEEEEEE-TTCEEEEEETTT---CSEEEEEECSS--------------------------------CEE
T ss_pred             CEEEEEEcC-CCEEEEEE-CcCeEEEEECCC---CcEEEEEcCCC--------------------------------CEE
Confidence            478899999 88665544 578999999875   34444332111                                256


Q ss_pred             eEEEccCCCEEEEEe
Q 031020           84 MIQLSLDGKRLYVTN   98 (167)
Q Consensus        84 ~~~LS~DGkrLyVaN   98 (167)
                      .+++||||++|+++.
T Consensus       103 ~v~~sp~g~~l~sgs  117 (902)
T 2oaj_A          103 SIDTDASLDWMLIGL  117 (902)
T ss_dssp             EEECCTTCSEEEEEE
T ss_pred             EEEECCCCCEEEEEc
Confidence            788999999999987

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=91.28  E-value=2.3  Score=33.76  Aligned_cols=15  Identities=20%  Similarity=-0.144  Sum_probs=7.9

Q ss_pred             EEEEecCCCEEEEEe
Q 031020            7 DFLISLDDRFLYFSN   21 (167)
Q Consensus         7 dI~IS~DdRfLYVSn   21 (167)
                      .+..++||++|++.+
T Consensus        81 ~~~~~~dG~~lv~~~   95 (276)
T 3no2_A           81 TARILPDGNALVAWC   95 (276)
T ss_dssp             EEEECTTSCEEEEEE
T ss_pred             ccEECCCCCEEEEec
Confidence            345555665555444

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=91.22  E-value=1.6  Score=38.18  Aligned_cols=51  Identities=12%  Similarity=0.087  Sum_probs=33.6

Q ss_pred             EEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEEccCCCEEEE
Q 031020           17 LYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLYV   96 (167)
Q Consensus        17 LYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS~DGkrLyV   96 (167)
                      +.+|.-..+.|+.||+..   .++..++..++.                           + ...-..+++||||+++.+
T Consensus       195 ~LaSgS~D~TIkIWDl~T---Gk~l~tL~g~~~---------------------------~-v~~v~~vafSpdG~~lvs  243 (356)
T 2w18_A          195 ALLGTTIMNNIVIWNLKT---GQLLKKMHIDDS---------------------------Y-QASVCHKAYSEMGLLFIV  243 (356)
T ss_dssp             EEEEEETTSEEEEEETTT---CCEEEEEECCC-------------------------------CCCEEEEEEETTEEEEE
T ss_pred             eEEEecCCCcEEEEECCC---CcEEEEEcCCCc---------------------------c-eeeeEEEEECCCCCEEEE
Confidence            446767789999999754   666666643321                           0 112455689999999877


Q ss_pred             Ee
Q 031020           97 TN   98 (167)
Q Consensus        97 aN   98 (167)
                      .+
T Consensus       244 ~s  245 (356)
T 2w18_A          244 LS  245 (356)
T ss_dssp             EC
T ss_pred             ec
Confidence            65

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=91.09  E-value=1.5  Score=34.95  Aligned_cols=35  Identities=11%  Similarity=0.257  Sum_probs=21.6

Q ss_pred             EEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEe
Q 031020            7 DFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWV   46 (167)
Q Consensus         7 dI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~   46 (167)
                      .+.+++||++| |+....+.|..||   +. .+++-++..
T Consensus       129 ~v~~~~~G~~l-v~~~~~~~v~~~d---~~-G~~~w~~~~  163 (276)
T 3no2_A          129 QINKNKKGNYL-VPLFATSEVREIA---PN-GQLLNSVKL  163 (276)
T ss_dssp             CCEECTTSCEE-EEETTTTEEEEEC---TT-SCEEEEEEC
T ss_pred             CceECCCCCEE-EEecCCCEEEEEC---CC-CCEEEEEEC
Confidence            34567788766 4555677888777   33 555544443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=90.70  E-value=2.8  Score=34.09  Aligned_cols=61  Identities=13%  Similarity=-0.004  Sum_probs=45.2

Q ss_pred             CceeEEEEecCCCEEEEEeC--CCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCC
Q 031020            3 GLITDFLISLDDRFLYFSNW--LHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG   80 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw--~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g   80 (167)
                      +.+..+..+++++.+.++.-  ..+.|+.||+..   .++...+..+.                            .   
T Consensus       277 ~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t---~~~~~~~~~~~----------------------------~---  322 (420)
T 4gga_A          277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS---GACLSAVDAHS----------------------------Q---  322 (420)
T ss_dssp             SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT---TEEEEEEECSS----------------------------C---
T ss_pred             CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc---cccceeecccc----------------------------c---
Confidence            45678999999888776543  468899999764   56666665443                            1   


Q ss_pred             CCceEEEccCCCEEEEEe
Q 031020           81 GPQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        81 ~P~~~~LS~DGkrLyVaN   98 (167)
                       ...+.++++++.|+++.
T Consensus       323 -v~~~~~~~~~~~lv~~s  339 (420)
T 4gga_A          323 -VCSILWSPHYKELISGH  339 (420)
T ss_dssp             -EEEEEEETTTTEEEEEE
T ss_pred             -eeeeeecCCCCeEEEEE
Confidence             56778899999999876

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=90.09  E-value=0.61  Score=42.12  Aligned_cols=66  Identities=12%  Similarity=0.114  Sum_probs=43.6

Q ss_pred             CceeEEEEecC---CCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCC
Q 031020            3 GLITDFLISLD---DRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR   79 (167)
Q Consensus         3 ~l~tdI~IS~D---dRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~   79 (167)
                      +-++.|.+|||   +++|+.+. ..|.|+.||+.....+... .+..                            .....
T Consensus       205 ~~V~~l~~sp~~~~~~~l~s~s-~Dg~I~iwd~~~~~~~~~~-~~~~----------------------------~~~~~  254 (753)
T 3jro_A          205 DWVRDVAWSPTVLLRSYLASVS-QDRTCIIWTQDNEQGPWKK-TLLK----------------------------EEKFP  254 (753)
T ss_dssp             SCEEEEEECCCCSSSEEEEEEE-SSSCEEEEEESSSSSCCBC-CBSS----------------------------SSCCS
T ss_pred             CcEEEEEeccCCCCCCEEEEEe-cCCEEEEecCCCCCCccee-EEec----------------------------cCCCC
Confidence            45789999999   77776555 5789999998763211110 0000                            01123


Q ss_pred             CCCceEEEccCCCEEEEEe
Q 031020           80 GGPQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        80 g~P~~~~LS~DGkrLyVaN   98 (167)
                      +....+++|+||++|+++.
T Consensus       255 ~~v~~l~~spdg~~l~s~s  273 (753)
T 3jro_A          255 DVLWRASWSLSGNVLALSG  273 (753)
T ss_dssp             SCCCCEEECTTTCCEEEEC
T ss_pred             CceEEEEEcCCCCEEEEEc
Confidence            3477889999999998886

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=89.39  E-value=0.38  Score=39.91  Aligned_cols=25  Identities=28%  Similarity=0.359  Sum_probs=17.2

Q ss_pred             EEEecCCCEEEEEeCCCC-cEEEEec
Q 031020            8 FLISLDDRFLYFSNWLHG-DIRQYNI   32 (167)
Q Consensus         8 I~IS~DdRfLYVSnw~hg-~I~qyDI   32 (167)
                      +.++|++++||.+.|..+ .|.+-++
T Consensus       189 ~~~~P~g~~iy~t~~~~~~~I~~~~l  214 (302)
T 3s25_A          189 KPVVLDDTNVYYMDVNRDNAIVHVNI  214 (302)
T ss_dssp             EEEEEETTEEEEEEGGGTTEEEEECS
T ss_pred             ceeeecCCEEEEEEcCCCcEEEEEEC
Confidence            346799999999998643 4554443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=89.38  E-value=2.8  Score=32.85  Aligned_cols=31  Identities=10%  Similarity=0.212  Sum_probs=25.9

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      ..+.++.+|+|+++|..+. ..+.|++||+..
T Consensus        14 ~~V~~v~~s~~g~~lasgs-~D~~v~lwd~~~   44 (316)
T 3bg1_A           14 DMIHDAQMDYYGTRLATCS-SDRSVKIFDVRN   44 (316)
T ss_dssp             CCEEEEEECGGGCEEEEEE-TTTEEEEEEEET
T ss_pred             CeEEEeeEcCCCCEEEEEe-CCCeEEEEEecC
Confidence            3578999999999986665 578999999875

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=89.36  E-value=0.92  Score=39.40  Aligned_cols=29  Identities=3%  Similarity=0.041  Sum_probs=26.6

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      ++.|+++||++.|+|+.- .+.|..||+..
T Consensus       187 ~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~  215 (334)
T 2p9w_A          187 YSGITFDPHSNKLIAFGG-PRALTAFDVSK  215 (334)
T ss_dssp             CSEEEEETTTTEEEEESS-SSSEEEEECSS
T ss_pred             cceEEEeCCCCEEEEEcC-CCeEEEEcCCC
Confidence            579999999999999987 89999999884

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=89.16  E-value=1.4  Score=38.88  Aligned_cols=31  Identities=16%  Similarity=0.050  Sum_probs=23.4

Q ss_pred             ceeEE--EEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            4 LITDF--LISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         4 l~tdI--~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      -+.+|  ..|+|++.+.+|+-..+.|+.||+.+
T Consensus       310 ~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~  342 (524)
T 2j04_B          310 YILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD  342 (524)
T ss_dssp             CEEEEEEECCTTSCCEEEEEETTSEEEEECGGG
T ss_pred             cEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC
Confidence            35677  56888855557777789999999876

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=89.07  E-value=2  Score=33.70  Aligned_cols=64  Identities=11%  Similarity=0.087  Sum_probs=41.2

Q ss_pred             ceeEEEEecCC----CEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCC
Q 031020            4 LITDFLISLDD----RFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR   79 (167)
Q Consensus         4 l~tdI~IS~Dd----RfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~   79 (167)
                      .+.++.+|||+    ++| +|+-..+.|+.|++.+....+...++. .+                             ..
T Consensus       214 ~V~~v~~sp~~~~~~~~l-as~s~D~~v~iw~~~~~~~~~~~~~~~-~~-----------------------------~~  262 (316)
T 3bg1_A          214 WVRDVAWAPSIGLPTSTI-ASCSQDGRVFIWTCDDASSNTWSPKLL-HK-----------------------------FN  262 (316)
T ss_dssp             CEEEEECCCCSSCSCCEE-EEEETTCEEEEEECSSTTCCCCBCCEE-EE-----------------------------CS
T ss_pred             ceEEEEecCCCCCCCceE-EEEcCCCeEEEEEccCccccchhhhhh-hc-----------------------------CC
Confidence            47889999997    555 566578899999987632211100000 00                             11


Q ss_pred             CCCceEEEccCCCEEEEEe
Q 031020           80 GGPQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        80 g~P~~~~LS~DGkrLyVaN   98 (167)
                      +.-..+++||||++|.++.
T Consensus       263 ~~v~~v~~sp~g~~las~~  281 (316)
T 3bg1_A          263 DVVWHVSWSITANILAVSG  281 (316)
T ss_dssp             SCEEEEEECTTTCCEEEEE
T ss_pred             CcEEEEEEcCCCCEEEEEc
Confidence            2356789999999998887

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=88.40  E-value=2.5  Score=37.34  Aligned_cols=70  Identities=17%  Similarity=0.085  Sum_probs=42.0

Q ss_pred             eeEEEEecCCC-EEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCc--cCCCC
Q 031020            5 ITDFLISLDDR-FLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGH--RLRGG   81 (167)
Q Consensus         5 ~tdI~IS~DdR-fLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~--~~~g~   81 (167)
                      +..|++.|||+ .|||+-+ .|.|++++-+.......+..+                       |+ .+..|.  .-++|
T Consensus        16 P~~~a~~pdG~~rl~V~er-~G~i~~~~~~g~~~~~~~~~~-----------------------~~-~~~~g~~~~~e~G   70 (463)
T 2wg3_C           16 PVGALHSGDGSQRLFILEK-EGYVKILTPEGEIFKEPYLDI-----------------------HK-LVQSGIKGGDERG   70 (463)
T ss_dssp             EEEEECCSSSSCCEEEEET-TTEEEEECTTSCBCSSCSEEC-----------------------TT-TBCCCCSSSCCCS
T ss_pred             ceEEEECCCCCeEEEEEeC-CceEEEEeCCCCeeeeeecCC-----------------------cc-eeccCccccCCCc
Confidence            56889999996 7889987 588888863211001111111                       00 111110  12457


Q ss_pred             CceEEEccC---CCEEEEEeC
Q 031020           82 PQMIQLSLD---GKRLYVTNS   99 (167)
Q Consensus        82 P~~~~LS~D---GkrLyVaNs   99 (167)
                      +-.|+|+||   .++|||+.+
T Consensus        71 llgia~~P~f~~n~~lYv~yt   91 (463)
T 2wg3_C           71 LLSLAFHPNYKKNGKLYVSYT   91 (463)
T ss_dssp             EEEEEECTTHHHHCEEEEEEE
T ss_pred             ceeeEeCCCCcCCCEEEEEEe
Confidence            888999997   679999985

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=88.23  E-value=5.2  Score=37.87  Aligned_cols=102  Identities=17%  Similarity=0.202  Sum_probs=66.0

Q ss_pred             eEEEEecCCCEEEEEeCCCCcEEEEeccCC------CC-CeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccC
Q 031020            6 TDFLISLDDRFLYFSNWLHGDIRQYNIEDP------KN-PVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRL   78 (167)
Q Consensus         6 tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp------~~-pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~   78 (167)
                      -...+..+| +.|.|.++...|+.|+|.+.      ++ -..+.++.+.                               
T Consensus       381 lHt~Fd~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~-------------------------------  428 (638)
T 3sbq_A          381 LHTTFDGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVH-------------------------------  428 (638)
T ss_dssp             EEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECS-------------------------------
T ss_pred             cEEEECCCC-ceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccc-------------------------------
Confidence            345678899 99999999999999999852      11 1345555543                               


Q ss_pred             CCCCceEE------EccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCCC
Q 031020           79 RGGPQMIQ------LSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDG  147 (167)
Q Consensus        79 ~g~P~~~~------LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~g  147 (167)
                       +.|-.+.      ..+|||+|.+.|.+-+   ..|-|-.-..=.+--.||+  ...+|+|-.|+.+ |+ ||.-
T Consensus       429 -YqpGH~~~~~get~~~dGk~lv~lnK~sk---drfl~vGpl~pen~QlidI--sGdkM~lv~D~P~-~~-EPHd  495 (638)
T 3sbq_A          429 -YQPGHLHASLCETNEADGKWLVALSKFSK---DRFLPVGPLHPENDQLIDI--SGDEMKLVHDGPT-FA-EPHD  495 (638)
T ss_dssp             -SCEEEEEETTTTSTTCCSCEEEEEESCCT---TSSCCCSSSCCEEEEEEEC--SSSSCEEEEEEEE-SS-CCCC
T ss_pred             -cCCcccccCCCccCCCCccEEEEeccccc---ccCcCCCCCCCCcceeEec--CCCceEEEecCCC-CC-CCcc
Confidence             2244443      3789999999995322   1233333222233344677  4558999999988 64 5544

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=86.68  E-value=7.9  Score=34.84  Aligned_cols=63  Identities=13%  Similarity=0.032  Sum_probs=42.8

Q ss_pred             CceeEEEEecC--CCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCC
Q 031020            3 GLITDFLISLD--DRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG   80 (167)
Q Consensus         3 ~l~tdI~IS~D--dRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g   80 (167)
                      +-++.|.+|++  +++|..+. ..|.|+.||+... ..+.+....  +                             ..+
T Consensus        54 ~~V~~l~~s~~~~~~~l~s~s-~Dg~I~vwd~~~~-~~~~~~~~~--~-----------------------------h~~  100 (753)
T 3jro_A           54 GPVWRVDWAHPKFGTILASCS-YDGKVLIWKEENG-RWSQIAVHA--V-----------------------------HSA  100 (753)
T ss_dssp             SCEEEEEECCTTSCSEEEEEE-TTSCEEEEEEETT-EEEEEEEEC--C-----------------------------CSS
T ss_pred             CceEEEEecCCCCCCEEEEEe-CCCeEEEEECCCC-ccccccccc--C-----------------------------CCC
Confidence            35788999998  88887666 5789999998751 111222211  1                             112


Q ss_pred             CCceEEEccC--CCEEEEEe
Q 031020           81 GPQMIQLSLD--GKRLYVTN   98 (167)
Q Consensus        81 ~P~~~~LS~D--GkrLyVaN   98 (167)
                      ....+++||+  |+.|+++.
T Consensus       101 ~V~~v~~sp~~~~~~l~sgs  120 (753)
T 3jro_A          101 SVNSVQWAPHEYGPLLLVAS  120 (753)
T ss_dssp             CEEEEEECCGGGCSEEEEEE
T ss_pred             CeEEEEECCCCCCCEEEEEe
Confidence            3677889999  88888887

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=86.30  E-value=3.1  Score=36.91  Aligned_cols=28  Identities=14%  Similarity=0.121  Sum_probs=20.7

Q ss_pred             ceeEEEEecCCCEEEEEeCCC-C--cEEEEe
Q 031020            4 LITDFLISLDDRFLYFSNWLH-G--DIRQYN   31 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~h-g--~I~qyD   31 (167)
                      ....+.+|+|||+|.++.+.. +  +|+.++
T Consensus       228 ~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~  258 (695)
T 2bkl_A          228 TFLQSDLSRDGKYLFVYILRGWSENDVYWKR  258 (695)
T ss_dssp             CEEEEEECTTSCCEEEEEEETTTEEEEEEEC
T ss_pred             EEEEEEECCCCCEEEEEEeCCCCceEEEEEc
Confidence            567889999999998887655 3  455443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=85.85  E-value=3.8  Score=35.53  Aligned_cols=82  Identities=10%  Similarity=0.052  Sum_probs=48.1

Q ss_pred             CCCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeE--------EEEEEeCc---eeecCCceeEeeCCCCCCCCC
Q 031020            1 MPGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVL--------TGQIWVGG---LFRKGSPVVAVTDDGQPYQSD   69 (167)
Q Consensus         1 ~p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pkl--------vg~v~~GG---~~~~~~~v~v~~~~~~~~~p~   69 (167)
                      +|. ++.+.+  |+++|||+  ..+.|+.||+..-.+.+-        ..-.++..   .....+.|.|..-++....+ 
T Consensus        87 lp~-V~~l~f--d~~~L~v~--~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~-  160 (388)
T 1xip_A           87 IPD-VIFVCF--HGDQVLVS--TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ-  160 (388)
T ss_dssp             CTT-EEEEEE--ETTEEEEE--ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE-
T ss_pred             CCC-eeEEEE--CCCEEEEE--cCCcEEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc-
Confidence            577 899999  99999999  458999999876443321        11111211   11233555555443322211 


Q ss_pred             CccccCccCCCCCceEEEccCCCEEEEEe
Q 031020           70 VPEVQGHRLRGGPQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        70 ~~~~~g~~~~g~P~~~~LS~DGkrLyVaN   98 (167)
                              +..+.+-++.||+|  ++++.
T Consensus       161 --------~~~~Vs~v~WSpkG--~~vg~  179 (388)
T 1xip_A          161 --------LAQNVTSFDVTNSQ--LAVLL  179 (388)
T ss_dssp             --------EEESEEEEEECSSE--EEEEE
T ss_pred             --------ccCCceEEEEcCCc--eEEEE
Confidence                    22247788999999  45554

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=84.47  E-value=10  Score=30.73  Aligned_cols=28  Identities=11%  Similarity=0.103  Sum_probs=16.7

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      .++.+.+  |+++|++++. .+.|+.||+..
T Consensus       241 ~v~~~~~--~~~~l~~~~~-dg~i~iwd~~~  268 (445)
T 2ovr_B          241 AVRCVQY--DGRRVVSGAY-DFMVKVWDPET  268 (445)
T ss_dssp             CEEEEEE--CSSCEEEEET-TSCEEEEEGGG
T ss_pred             cEEEEEE--CCCEEEEEcC-CCEEEEEECCC
Confidence            3445555  5666666664 45666666654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=84.02  E-value=2.2  Score=37.58  Aligned_cols=29  Identities=3%  Similarity=-0.138  Sum_probs=23.0

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      +..|.+|||++.| +|.-..+.|+.||+..
T Consensus       358 v~~v~fsp~~~~l-~s~~~d~tv~lwd~~~  386 (524)
T 2j04_B          358 LVPVVYCPQIYSY-IYSDGASSLRAVPSRA  386 (524)
T ss_dssp             CCCEEEETTTTEE-EEECSSSEEEEEETTC
T ss_pred             ccceEeCCCcCeE-EEeCCCCcEEEEECcc
Confidence            4578999999985 5555677899999876

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=83.60  E-value=4.5  Score=35.99  Aligned_cols=16  Identities=19%  Similarity=-0.060  Sum_probs=13.3

Q ss_pred             EEEEecCCCEEEEEeC
Q 031020            7 DFLISLDDRFLYFSNW   22 (167)
Q Consensus         7 dI~IS~DdRfLYVSnw   22 (167)
                      .++++|+.+.|||.+.
T Consensus       390 ~~a~dp~~g~~yv~~~  405 (571)
T 2ad6_A          390 VDSYDPESRTLYAGLN  405 (571)
T ss_dssp             BCEEETTTTEEEEEEE
T ss_pred             CceECCCCCEEEEEch
Confidence            3678999999999864

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=82.99  E-value=13  Score=30.18  Aligned_cols=25  Identities=12%  Similarity=0.187  Sum_probs=20.0

Q ss_pred             EEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            9 LISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         9 ~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      .++.|+++|.++. ..|.|++||+..
T Consensus       138 ~~~~d~~~l~~g~-~dg~i~iwd~~~  162 (435)
T 1p22_A          138 CLQYDDQKIVSGL-RDNTIKIWDKNT  162 (435)
T ss_dssp             EEECCSSEEEEEE-SSSCEEEEESSS
T ss_pred             EEEECCCEEEEEe-CCCeEEEEeCCC
Confidence            5677999987666 578999999764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=81.21  E-value=6.7  Score=35.57  Aligned_cols=15  Identities=7%  Similarity=0.268  Sum_probs=12.6

Q ss_pred             EEEEecCCCEEEEEe
Q 031020            7 DFLISLDDRFLYFSN   21 (167)
Q Consensus         7 dI~IS~DdRfLYVSn   21 (167)
                      .+++||+.+.|||..
T Consensus       397 ~~a~dp~~~~~yv~~  411 (677)
T 1kb0_A          397 PMSFNPQTGLVYLPA  411 (677)
T ss_dssp             CCEEETTTTEEEEEE
T ss_pred             CceEcCCCCEEEEeC
Confidence            467899999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	167
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.51
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.3
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.19
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.97
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.95
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.8
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.78
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.73
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.71
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.69
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.68
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.68
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.55
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.54
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.51
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.51
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.47
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.33
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.29
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.15
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.03
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.99
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.96
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.89
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	97.86
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.85
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.73
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.57
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.54
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	97.44
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.42
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.34
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.28
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.23
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.22
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	97.17
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.12
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.1
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.03
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.95
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.95
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.91
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	96.89
d1tbga_	340	beta1-subunit of the signal-transducing G protein	96.77
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	96.72
d1tbga_	340	beta1-subunit of the signal-transducing G protein	96.67
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	96.66
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	96.61
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	96.6
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	96.59
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.5
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.49
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	96.47
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.43
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	96.4
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	96.37
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	96.33
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.28
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	96.27
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.23
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	96.16
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	96.1
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	96.07
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	96.01
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	95.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	95.53
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	95.37
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	95.09
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	94.17
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	94.14
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	93.92
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	93.59
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	92.99
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	92.48
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.93
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	90.69
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	86.6
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	82.99
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	82.73
d1s6la2	132	Alkylmercury lyase MerB {Escherichia coli [TaxId:	82.14

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=1.6e-13  Score=104.07  Aligned_cols=89  Identities=19%  Similarity=0.267  Sum_probs=73.1

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCC-CeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKN-PVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~-pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .++++++|+|++++|++++..+.++.|++..... .+..+.+..|+                            .    |
T Consensus       231 ~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~----p  278 (333)
T d1ri6a_         231 WAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET----------------------------Q----P  278 (333)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS----------------------------S----C
T ss_pred             cceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCC----------------------------C----e
Confidence            4578999999999999999999999999986433 34455555554                            2    9


Q ss_pred             ceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeE
Q 031020           83 QMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFV  139 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~v  139 (167)
                      +.+++|||||+|||+|               ++++++..+++|.++|.|+....+-+
T Consensus       279 ~~~a~spDGk~l~va~---------------~~~~~v~v~~id~~tG~l~~~~~~~~  320 (333)
T d1ri6a_         279 RGFNVDHSGKYLIAAG---------------QKSHHISVYEIVGEQGLLHEKGRYAV  320 (333)
T ss_dssp             CCEEECTTSSEEEEEC---------------TTTCEEEEEEEETTTTEEEEEEEEEC
T ss_pred             eEEEEeCCCCEEEEEE---------------CCCCeEEEEEEECCCCcEEEEEeccC
Confidence            9999999999999999               35778888999999999987776644

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.30  E-value=4e-12  Score=104.71  Aligned_cols=81  Identities=7%  Similarity=0.074  Sum_probs=60.0

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCc-----EEEEeccCCCCCe---EEEEEEeCceeecCCceeEeeCCCCCCCCCCccccC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGD-----IRQYNIEDPKNPV---LTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQG   75 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~-----I~qyDIsdp~~pk---lvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g   75 (167)
                      .+++|++||||||||++||+++.     |+.|++.......   ...+..+.                           |
T Consensus       256 ~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~---------------------------G  308 (365)
T d1jofa_         256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS---------------------------G  308 (365)
T ss_dssp             EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC---------------------------C
T ss_pred             CccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcC---------------------------C
Confidence            36799999999999999999887     9999988633221   11122222                           2


Q ss_pred             ccCCCCCceEEEcc-CCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCC
Q 031020           76 HRLRGGPQMIQLSL-DGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGG  130 (167)
Q Consensus        76 ~~~~g~P~~~~LS~-DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~  130 (167)
                      .+    |+.|+++| ||++|||||        |       +++.|..+++|.+++.
T Consensus       309 ~~----p~~i~~~p~~G~~l~va~--------~-------~s~~v~v~~~~~~~l~  345 (365)
T d1jofa_         309 GH----SNAVSPCPWSDEWMAITD--------D-------QEGWLEIYRWKDEFLH  345 (365)
T ss_dssp             TT----CCCEEECTTCTTEEEEEC--------S-------SSCEEEEEEEETTEEE
T ss_pred             CC----ccEEEecCCCCCEEEEEe--------C-------CCCeEEEEEEeCCcCc
Confidence            33    99999998 999999999        3       5778888888765543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=9e-11  Score=88.58  Aligned_cols=66  Identities=20%  Similarity=0.320  Sum_probs=55.1

Q ss_pred             CCceeEEEEecCCCEEEEEeCCCCcEEEEeccCC-CCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCC
Q 031020            2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDP-KNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG   80 (167)
Q Consensus         2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp-~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g   80 (167)
                      |+-+..|++|||||+|||+++..+.|+.|+|... ...++.+....+.                            .   
T Consensus        36 ~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~----------------------------~---   84 (333)
T d1ri6a_          36 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG----------------------------S---   84 (333)
T ss_dssp             SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS----------------------------C---
T ss_pred             CCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCC----------------------------C---
Confidence            5667899999999999999999999999999853 2345666666554                            3   


Q ss_pred             CCceEEEccCCCEEEEEeC
Q 031020           81 GPQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        81 ~P~~~~LS~DGkrLyVaNs   99 (167)
                       |..+++||||++|||+|.
T Consensus        85 -p~~l~~spDg~~l~v~~~  102 (333)
T d1ri6a_          85 -LTHISTDHQGQFVFVGSY  102 (333)
T ss_dssp             -CSEEEECTTSSEEEEEET
T ss_pred             -ceEEEEcCCCCEEeeccc
Confidence             999999999999999984

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.97  E-value=4e-09  Score=86.37  Aligned_cols=83  Identities=14%  Similarity=0.249  Sum_probs=65.2

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      +-.|.+|||||||||++.+.+.|++|++........++.+....                         .|    .+||.
T Consensus       147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~-------------------------~g----~gPr~  197 (365)
T d1jofa_         147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-------------------------PG----DHPRW  197 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-------------------------TT----CCEEE
T ss_pred             ceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecC-------------------------CC----CceEE
Confidence            45799999999999999999999999987655555555554432                         12    24999


Q ss_pred             EEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe
Q 031020           85 IQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM  131 (167)
Q Consensus        85 ~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l  131 (167)
                      +.++|||+++||+|               +.+.++..+++|..++..
T Consensus       198 i~f~pdg~~~yv~~---------------e~~~~V~v~~~~~~~~~~  229 (365)
T d1jofa_         198 VAMHPTGNYLYALM---------------EAGNRICEYVIDPATHMP  229 (365)
T ss_dssp             EEECTTSSEEEEEE---------------TTTTEEEEEEECTTTCCE
T ss_pred             EEECCCCceEEEec---------------cCCCEEEEEEecCCCceE
Confidence            99999999999999               457788888888666543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.95  E-value=4.7e-09  Score=77.55  Aligned_cols=77  Identities=21%  Similarity=0.272  Sum_probs=62.0

Q ss_pred             CceeEEEEecCCCEEEEEeCCC--CcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLH--GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRG   80 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~h--g~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g   80 (167)
                      ..+..+.+++|++++|+++...  +.|.+||+.   +.+++.++.+|+                            .   
T Consensus       200 ~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~---t~~~~~~~~~~~----------------------------~---  245 (301)
T d1l0qa2         200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG---TNKITARIPVGP----------------------------D---  245 (301)
T ss_dssp             SEEEEEEECTTSSEEEEEEECSSCCEEEEEETT---TTEEEEEEECCS----------------------------S---
T ss_pred             CCcceeeccccccccccccccceeeeeeeeecC---CCeEEEEEcCCC----------------------------C---
Confidence            4567899999999999988654  679999854   478888888765                            3   


Q ss_pred             CCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe
Q 031020           81 GPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM  131 (167)
Q Consensus        81 ~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l  131 (167)
                       |..+++||||++||||++               ..+.|..+|+  ++|++
T Consensus       246 -~~~va~spdg~~l~va~~---------------~~~~i~v~D~--~t~~~  278 (301)
T d1l0qa2         246 -PAGIAVTPDGKKVYVALS---------------FCNTVSVIDT--ATNTI  278 (301)
T ss_dssp             -EEEEEECTTSSEEEEEET---------------TTTEEEEEET--TTTEE
T ss_pred             -EEEEEEeCCCCEEEEEEC---------------CCCeEEEEEC--CCCeE
Confidence             999999999999999994               3556776766  77865

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.80  E-value=1e-08  Score=76.69  Aligned_cols=68  Identities=21%  Similarity=0.169  Sum_probs=54.4

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -+.+|.+|||||+|||++-.++.|.+||+.   +.+++.++..+....                         .....|.
T Consensus        41 ~p~~l~~spDG~~l~v~~~~~~~v~~~d~~---t~~~~~~~~~~~~~~-------------------------~~~~~~~   92 (346)
T d1jmxb_          41 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLD---TCKNTFHANLSSVPG-------------------------EVGRSMY   92 (346)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETT---TTEEEEEEESCCSTT-------------------------EEEECSS
T ss_pred             CcceEEECCCCCEEEEEECCCCcEEEEeCc---cCeeeeeeccccccc-------------------------ccCCceE
Confidence            357899999999999999999999999965   488888887765210                         1112389


Q ss_pred             eEEEccCCCEEEEEeC
Q 031020           84 MIQLSLDGKRLYVTNS   99 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNs   99 (167)
                      .+++|+||++|||++.
T Consensus        93 ~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          93 SFAISPDGKEVYATVN  108 (346)
T ss_dssp             CEEECTTSSEEEEEEE
T ss_pred             EEEEecCCCEEEEEec
Confidence            9999999999999973

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.78  E-value=1.7e-08  Score=74.52  Aligned_cols=50  Identities=30%  Similarity=0.474  Sum_probs=44.5

Q ss_pred             CEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEEccCCCEE
Q 031020           15 RFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRL   94 (167)
Q Consensus        15 RfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS~DGkrL   94 (167)
                      .|+||+|-..+.|.+||+.   +.+++.++.+|+                            .    |+.+++||||++|
T Consensus         2 ~~~yV~~~~~~~v~v~D~~---t~~~~~~i~~g~----------------------------~----p~~va~spdG~~l   46 (301)
T d1l0qa2           2 TFAYIANSESDNISVIDVT---SNKVTATIPVGS----------------------------N----PMGAVISPDGTKV   46 (301)
T ss_dssp             EEEEEEETTTTEEEEEETT---TTEEEEEEECSS----------------------------S----EEEEEECTTSSEE
T ss_pred             eEEEEEECCCCEEEEEECC---CCeEEEEEECCC----------------------------C----ceEEEEeCCCCEE
Confidence            4999999999999999955   478999999876                            3    9999999999999


Q ss_pred             EEEeC
Q 031020           95 YVTNS   99 (167)
Q Consensus        95 yVaNs   99 (167)
                      ||+++
T Consensus        47 ~v~~~   51 (301)
T d1l0qa2          47 YVANA   51 (301)
T ss_dssp             EEEEG
T ss_pred             EEEEC
Confidence            99994

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.73  E-value=3.9e-08  Score=81.76  Aligned_cols=62  Identities=16%  Similarity=0.259  Sum_probs=51.5

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+-+|++|||||+||++++ .|.|..||+. +.+++.+.+|.+|.                            .    |+
T Consensus        63 ~~~~v~fSpDG~~l~~~s~-dg~v~~~d~~-t~~~~~~~~i~~~~----------------------------~----~~  108 (432)
T d1qksa2          63 AVHISRLSASGRYLFVIGR-DGKVNMIDLW-MKEPTTVAEIKIGS----------------------------E----AR  108 (432)
T ss_dssp             CEEEEEECTTSCEEEEEET-TSEEEEEETT-SSSCCEEEEEECCS----------------------------E----EE
T ss_pred             CeeEEEECCCCCEEEEEcC-CCCEEEEEee-CCCceEEEEEecCC----------------------------C----CC
Confidence            3678999999999999997 5899999987 46778888999876                            2    66


Q ss_pred             eEEE----ccCCCEEEEEeC
Q 031020           84 MIQL----SLDGKRLYVTNS   99 (167)
Q Consensus        84 ~~~L----S~DGkrLyVaNs   99 (167)
                      .+.+    ||||++|||+|+
T Consensus       109 ~~~~s~~~SpDG~~l~vs~~  128 (432)
T d1qksa2         109 SIETSKMEGWEDKYAIAGAY  128 (432)
T ss_dssp             EEEECCSTTCTTTEEEEEEE
T ss_pred             CeEEecccCCCCCEEEEEcC
Confidence            6655    679999999995

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.71  E-value=3.2e-08  Score=78.10  Aligned_cols=67  Identities=7%  Similarity=-0.082  Sum_probs=49.6

Q ss_pred             eEEEEecCCCEEEEEeCC---------CCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCc
Q 031020            6 TDFLISLDDRFLYFSNWL---------HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGH   76 (167)
Q Consensus         6 tdI~IS~DdRfLYVSnw~---------hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~   76 (167)
                      ..+++|+|||+||+++..         .+.|++||.   ...+.+.++.+...                    ....-|.
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~---~t~~~~~~i~~p~~--------------------~~~~~g~  124 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP---VTFLPIADIELPDA--------------------PRFSVGP  124 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT---TTCCEEEEEEETTS--------------------CSCCBSC
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEEC---CCCcEeeeecCCcc--------------------ceecccC
Confidence            358899999999999864         355999985   45788888875331                    1111233


Q ss_pred             cCCCCCceEEEccCCCEEEEEeC
Q 031020           77 RLRGGPQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        77 ~~~g~P~~~~LS~DGkrLyVaNs   99 (167)
                      .    |..+++|+|||+|||+|.
T Consensus       125 ~----p~~~a~SpDGk~l~va~~  143 (368)
T d1mdah_         125 R----VHIIGNCASSACLLFFLF  143 (368)
T ss_dssp             C----TTSEEECTTSSCEEEEEC
T ss_pred             C----ccceEECCCCCEEEEEeC
Confidence            3    999999999999999993

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.69  E-value=3.3e-08  Score=73.52  Aligned_cols=67  Identities=18%  Similarity=0.083  Sum_probs=53.3

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+++|++|||||+|||++-..+.|.+||+..   .+++.++.....                      ...+..    |.
T Consensus        35 ~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t---~~~~~~~~~~~~----------------------~~~~~~----~~   85 (337)
T d1pbyb_          35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVT---GETLGRIDLSTP----------------------EERVKS----LF   85 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTT---CCEEEEEECCBT----------------------TEEEEC----TT
T ss_pred             CccEEEECCCCCEEEEEECCCCeEEEEECCC---CcEEEEEecCCC----------------------cccccc----ee
Confidence            4679999999999999998889999999764   677777766441                      011223    88


Q ss_pred             eEEEccCCCEEEEEeC
Q 031020           84 MIQLSLDGKRLYVTNS   99 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNs   99 (167)
                      .+++|+||++||+++.
T Consensus        86 ~v~~s~dg~~l~~~~~  101 (337)
T d1pbyb_          86 GAALSPDGKTLAIYES  101 (337)
T ss_dssp             CEEECTTSSEEEEEEE
T ss_pred             eEEEcCCCcEEEEeec
Confidence            8999999999999985

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.68  E-value=6.8e-08  Score=74.54  Aligned_cols=64  Identities=17%  Similarity=0.094  Sum_probs=51.0

Q ss_pred             CceeEEEEecCCCEEEEEeCCC----CcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccC
Q 031020            3 GLITDFLISLDDRFLYFSNWLH----GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRL   78 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~h----g~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~   78 (167)
                      +.+..+++|||+|.+|+++-.|    +.|+++|   ....++++++..|.                              
T Consensus        21 ~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D---~~tg~~~~~~~~~~------------------------------   67 (373)
T d2madh_          21 GPTNDEAPGADGRRSYINLPAHHSAIIQQWVLD---AGSGSILGHVNGGF------------------------------   67 (373)
T ss_pred             CCccccccCCCCCEEEEEcccccCCCceEEEEE---CCCCCEEEEEeCCC------------------------------
Confidence            4467788999999999998766    5688887   45688999887554                              


Q ss_pred             CCCCceEEEccCCCEEEEEeCCCc
Q 031020           79 RGGPQMIQLSLDGKRLYVTNSLFS  102 (167)
Q Consensus        79 ~g~P~~~~LS~DGkrLyVaNsl~s  102 (167)
                         +..+.+||||++|||++.-..
T Consensus        68 ---~~~~a~SpDG~~l~va~~~~~   88 (373)
T d2madh_          68 ---LPNPVAAHSGSEFALASTSFS   88 (373)
T ss_pred             ---CccEEEcCCCCEEEEEeecCC
Confidence               336899999999999996443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.68  E-value=6.5e-08  Score=72.16  Aligned_cols=58  Identities=12%  Similarity=0.245  Sum_probs=47.9

Q ss_pred             EEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEE
Q 031020            8 FLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQL   87 (167)
Q Consensus         8 I~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~L   87 (167)
                      .++|++++||+++++. +.|.+||+.   +.+++..+.+.+.                              ++|..+++
T Consensus         2 ~a~~~~~~~l~~~~~~-~~v~v~D~~---t~~~~~t~~~~~~------------------------------~~p~~l~~   47 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYP-NNLHVVDVA---SDTVYKSCVMPDK------------------------------FGPGTAMM   47 (346)
T ss_dssp             CCCCTTCEEEEEEETT-TEEEEEETT---TTEEEEEEECSSC------------------------------CSSCEEEE
T ss_pred             ccCCCCCcEEEEEcCC-CEEEEEECC---CCCEEEEEEcCCC------------------------------CCcceEEE
Confidence            4689999999999874 799999965   4788888876431                              13999999


Q ss_pred             ccCCCEEEEEeC
Q 031020           88 SLDGKRLYVTNS   99 (167)
Q Consensus        88 S~DGkrLyVaNs   99 (167)
                      ||||++|||+++
T Consensus        48 spDG~~l~v~~~   59 (346)
T d1jmxb_          48 APDNRTAYVLNN   59 (346)
T ss_dssp             CTTSSEEEEEET
T ss_pred             CCCCCEEEEEEC
Confidence            999999999994

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.55  E-value=9.7e-08  Score=72.67  Aligned_cols=55  Identities=18%  Similarity=0.078  Sum_probs=44.9

Q ss_pred             EEecCCCEEEEEeCCC----CcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            9 LISLDDRFLYFSNWLH----GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         9 ~IS~DdRfLYVSnw~h----g~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      +.|||+|.|||++-.+    +.|++||.   ++.++++++..|.                            .    | .
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~---~tg~~~~~~~~g~----------------------------~----~-~   51 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDG---EAGRVIGMIDGGF----------------------------L----P-N   51 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEET---TTTEEEEEEEECS----------------------------S----C-E
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEEC---CCCcEEEEEECCC----------------------------C----C-c
Confidence            5699999999998643    35888884   5688999998765                            2    5 5


Q ss_pred             EEEccCCCEEEEEeC
Q 031020           85 IQLSLDGKRLYVTNS   99 (167)
Q Consensus        85 ~~LS~DGkrLyVaNs   99 (167)
                      +++|||||+|||+|+
T Consensus        52 ~a~SpDg~~l~v~~~   66 (355)
T d2bbkh_          52 PVVADDGSFIAHAST   66 (355)
T ss_dssp             EEECTTSSCEEEEEE
T ss_pred             eEEcCCCCEEEEEeC
Confidence            899999999999994

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.54  E-value=9.2e-07  Score=65.49  Aligned_cols=58  Identities=7%  Similarity=0.103  Sum_probs=48.7

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .....+.++++++++|+..   +.|++||+..   .+++.++..++                                .|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~---~~i~v~d~~~---~~~~~~~~~~~--------------------------------~~  282 (337)
T d1pbyb_         241 VFYFSTAVNPAKTRAFGAY---NVLESFDLEK---NASIKRVPLPH--------------------------------SY  282 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEE---SEEEEEETTT---TEEEEEEECSS--------------------------------CC
T ss_pred             cceEEEEecccceEEEEcc---ccEEEEECCC---CcEEEEEcCCC--------------------------------CE
Confidence            3456788999999999885   7899999664   77888877655                                28


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      +.+++|+||++|||++
T Consensus       283 ~~~~~s~dG~~l~v~~  298 (337)
T d1pbyb_         283 YSVNVSTDGSTVWLGG  298 (337)
T ss_dssp             CEEEECTTSCEEEEES
T ss_pred             EEEEECCCCCEEEEEe
Confidence            9999999999999998

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.51  E-value=2.6e-07  Score=70.27  Aligned_cols=68  Identities=16%  Similarity=0.164  Sum_probs=50.9

Q ss_pred             eeEEEEecCCCEEEEEeCC---------CCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccC
Q 031020            5 ITDFLISLDDRFLYFSNWL---------HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQG   75 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~---------hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g   75 (167)
                      ...+++|||||+|||+|..         .|.|++||.+   +.+++.++.....-                    .    
T Consensus        49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~---t~~~~~~~~~~~~~--------------------~----  101 (355)
T d2bbkh_          49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV---TLLPTADIELPDAP--------------------R----  101 (355)
T ss_dssp             SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT---TCCEEEEEEETTCC--------------------C----
T ss_pred             CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECC---CCCEEEEEecCCcc--------------------e----
Confidence            3468999999999998742         4689999865   47788888765411                    0    


Q ss_pred             ccCCCCCceEEEccCCCEEEEEeC
Q 031020           76 HRLRGGPQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        76 ~~~~g~P~~~~LS~DGkrLyVaNs   99 (167)
                      ..+...|..+++|+||++||++|.
T Consensus       102 ~~~~~~~~~~~~s~dg~~~~v~~~  125 (355)
T d2bbkh_         102 FLVGTYPWMTSLTPDGKTLLFYQF  125 (355)
T ss_dssp             CCBSCCGGGEEECTTSSEEEEEEC
T ss_pred             eecCCCCceEEEecCCCeeEEecC
Confidence            012234999999999999999984

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.51  E-value=4.8e-07  Score=73.17  Aligned_cols=62  Identities=13%  Similarity=0.170  Sum_probs=49.1

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -+..|++|||||+||++++ .+.|++||+. ...+..+.+|..+.                            .    |+
T Consensus        63 ~~~~vafSPDGk~l~~~~~-d~~v~vwd~~-t~~~~~~~~i~~~~----------------------------~----~~  108 (426)
T d1hzua2          63 AVHISRMSASGRYLLVIGR-DARIDMIDLW-AKEPTKVAEIKIGI----------------------------E----AR  108 (426)
T ss_dssp             SEEEEEECTTSCEEEEEET-TSEEEEEETT-SSSCEEEEEEECCS----------------------------E----EE
T ss_pred             CeeEEEECCCCCEEEEEeC-CCCEEEEEcc-CCceeEEEEEeCCC----------------------------C----Cc
Confidence            4678999999999999997 4799999987 45566777887764                            1    55


Q ss_pred             eEEE----ccCCCEEEEEeC
Q 031020           84 MIQL----SLDGKRLYVTNS   99 (167)
Q Consensus        84 ~~~L----S~DGkrLyVaNs   99 (167)
                      .+.+    ||||++|||+++
T Consensus       109 ~~~~s~~~spDG~~l~v~~~  128 (426)
T d1hzua2         109 SVESSKFKGYEDRYTIAGAY  128 (426)
T ss_dssp             EEEECCSTTCTTTEEEEEEE
T ss_pred             ceEEeeeecCCCCEEEEeec
Confidence            5554    579999999994

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.47  E-value=3.3e-07  Score=73.76  Aligned_cols=75  Identities=16%  Similarity=0.297  Sum_probs=60.4

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+-.|++..||+ |||++|+.+.|++||   |+..++...+.+.+                           ..    |.
T Consensus       227 ~pdGiavD~~Gn-lyVa~~~~g~I~~~d---p~~g~~~~~i~~p~---------------------------~~----~t  271 (314)
T d1pjxa_         227 GADGMDFDEDNN-LLVANWGSSHIEVFG---PDGGQPKMRIRCPF---------------------------EK----PS  271 (314)
T ss_dssp             EEEEEEEBTTCC-EEEEEETTTEEEEEC---TTCBSCSEEEECSS---------------------------SC----EE
T ss_pred             cceeeEEecCCc-EEEEEcCCCEEEEEe---CCCCEEEEEEECCC---------------------------CC----EE
Confidence            456799999996 899999999999998   55555666666654                           12    89


Q ss_pred             eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCC
Q 031020           84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKG  129 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G  129 (167)
                      .+++.+||++||||++               .++.+.+++++ ..|
T Consensus       272 ~~afg~d~~~lyVt~~---------------~~g~i~~~~~~-~~G  301 (314)
T d1pjxa_         272 NLHFKPQTKTIFVTEH---------------ENNAVWKFEWQ-RNG  301 (314)
T ss_dssp             EEEECTTSSEEEEEET---------------TTTEEEEEECS-SCB
T ss_pred             EEEEeCCCCEEEEEEC---------------CCCcEEEEECC-CCC
Confidence            9999999999999994               57799999984 555

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.33  E-value=9.8e-07  Score=73.07  Aligned_cols=61  Identities=15%  Similarity=-0.024  Sum_probs=50.6

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      ...|..|+|++++||+.+..+.|.++|..+...++ +.++.+|.                            .    |+.
T Consensus       165 ~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~-~~~i~~g~----------------------------~----~~~  211 (432)
T d1qksa2         165 VAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK-TTEISAER----------------------------F----LHD  211 (432)
T ss_dssp             EEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE-EEEEECCS----------------------------S----EEE
T ss_pred             eeEEEECCCCCEEEEEEccCCeEEEEEccCCCcce-EEEEcccC----------------------------c----ccc
Confidence            45689999999999999999999999988744333 34566654                            2    999


Q ss_pred             EEEccCCCEEEEEe
Q 031020           85 IQLSLDGKRLYVTN   98 (167)
Q Consensus        85 ~~LS~DGkrLyVaN   98 (167)
                      +.+||||++|||+|
T Consensus       212 ~~~spdg~~~~va~  225 (432)
T d1qksa2         212 GGLDGSHRYFITAA  225 (432)
T ss_dssp             EEECTTSCEEEEEE
T ss_pred             ceECCCCCEEEEec
Confidence            99999999999999

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.29  E-value=7.7e-07  Score=71.97  Aligned_cols=74  Identities=18%  Similarity=0.148  Sum_probs=57.5

Q ss_pred             ceeEEEEecCCC-EEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            4 LITDFLISLDDR-FLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         4 l~tdI~IS~DdR-fLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .++.+.++.|.+ +++|++...|.|++||+.   +.+++.++..|.                            .    |
T Consensus        20 ~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~---t~~~~~~l~~g~----------------------------~----~   64 (426)
T d1hzua2          20 RPKKQLNDLDLPNLFSVTLRDAGQIALVDGD---SKKIVKVIDTGY----------------------------A----V   64 (426)
T ss_dssp             SCSSCCSCCCGGGEEEEEETTTTEEEEEETT---TCSEEEEEECCS----------------------------S----E
T ss_pred             CCCcccccCCCCeEEEEEEcCCCEEEEEECC---CCcEEEEEeCCC----------------------------C----e
Confidence            455667888866 556999999999999965   478888888764                            2    8


Q ss_pred             ceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCC
Q 031020           83 QMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEK  128 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~  128 (167)
                      +.+++|||||+||+++               ++ +++..+|+++.+
T Consensus        65 ~~vafSPDGk~l~~~~---------------~d-~~v~vwd~~t~~   94 (426)
T d1hzua2          65 HISRMSASGRYLLVIG---------------RD-ARIDMIDLWAKE   94 (426)
T ss_dssp             EEEEECTTSCEEEEEE---------------TT-SEEEEEETTSSS
T ss_pred             eEEEECCCCCEEEEEe---------------CC-CCEEEEEccCCc
Confidence            9999999999999999               23 366667775443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.15  E-value=1e-05  Score=61.91  Aligned_cols=78  Identities=17%  Similarity=0.155  Sum_probs=55.9

Q ss_pred             CCceeEEEEecCCCEEEEE---------eCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCcc
Q 031020            2 PGLITDFLISLDDRFLYFS---------NWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPE   72 (167)
Q Consensus         2 p~l~tdI~IS~DdRfLYVS---------nw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~   72 (167)
                      |.....+.+|+|++.+|+.         +...+.|..||+..   .+.+.++..|.                        
T Consensus       266 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t---~~~~~~~~~~~------------------------  318 (373)
T d2madh_         266 PGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV---GQTSSQISLGH------------------------  318 (373)
T ss_pred             cCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCC---CcEEEEecCCC------------------------
Confidence            3445678889999988865         34456777777543   66777776654                        


Q ss_pred             ccCccCCCCCceEEEccCCCE-EEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe
Q 031020           73 VQGHRLRGGPQMIQLSLDGKR-LYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM  131 (167)
Q Consensus        73 ~~g~~~~g~P~~~~LS~DGkr-LyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l  131 (167)
                              +|..+++|+||++ |||+++               ....+..+|+  ++|++
T Consensus       319 --------~~~~~a~spDG~~~l~vt~~---------------~d~~v~v~D~--~tg~~  353 (373)
T d2madh_         319 --------DVDAISVAQDGGPDLYALSA---------------GTEVLHIYDA--GAGDQ  353 (373)
T ss_pred             --------CeeEEEECCCCCEEEEEEeC---------------CCCeEEEEEC--CCCCE
Confidence                    2899999999997 578884               3456666766  88886

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.03  E-value=1.5e-05  Score=63.54  Aligned_cols=79  Identities=16%  Similarity=0.236  Sum_probs=54.0

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+..|++|+|++.|||++...+.|++||+..+..............+                          .-.++|.
T Consensus       178 ~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~--------------------------~~~~~Pd  231 (319)
T d2dg1a1         178 VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYF--------------------------TGHEGPD  231 (319)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEEC--------------------------CSSSEEE
T ss_pred             eeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeecc--------------------------CCcccee
Confidence            35679999999999999999999999999854332211111110100                          0113499


Q ss_pred             eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEe
Q 031020           84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDV  124 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dv  124 (167)
                      -|++..+|+ ||||+.               .++.+.++|-
T Consensus       232 Gl~vD~~G~-l~Va~~---------------~~g~V~~~~p  256 (319)
T d2dg1a1         232 SCCIDSDDN-LYVAMY---------------GQGRVLVFNK  256 (319)
T ss_dssp             EEEEBTTCC-EEEEEE---------------TTTEEEEECT
T ss_pred             eeeEcCCCC-EEEEEc---------------CCCEEEEECC
Confidence            999999996 999983               3567776664

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.99  E-value=6.5e-06  Score=71.63  Aligned_cols=100  Identities=12%  Similarity=0.018  Sum_probs=60.2

Q ss_pred             CCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCc-----eee--------cCCceeEeeCCCCCCCC
Q 031020            2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGG-----LFR--------KGSPVVAVTDDGQPYQS   68 (167)
Q Consensus         2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG-----~~~--------~~~~v~v~~~~~~~~~p   68 (167)
                      ++-+..+.+|+|||++|++|...+.+...+...   .+....+.++.     .+.        .+..|.++.+....  .
T Consensus       175 ~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t---~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~--~  249 (441)
T d1qnia2         175 DGNLDNTDADYTGKYATSTCYNSERAVDLAGTM---RNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGES--E  249 (441)
T ss_dssp             SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHT---CSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSC--S
T ss_pred             CCCccceEECCCCCEEEEEecCCCceEEEeccC---cceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCC--c
Confidence            455678999999999999999877766544332   22223332221     010        11223333332211  1


Q ss_pred             CC-ccccCccCCCCCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEee
Q 031020           69 DV-PEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN  125 (167)
Q Consensus        69 ~~-~~~~g~~~~g~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD  125 (167)
                      .. ...-|+.    |..+.+|||||++||+|+               ...++-.+|++
T Consensus       250 v~~~IPvgks----PhGv~vSPDGkyl~~~~~---------------~~~tvsv~d~~  288 (441)
T d1qnia2         250 FTRYIPVPKN----PHGLNTSPDGKYFIANGK---------------LSPTVSVIAID  288 (441)
T ss_dssp             SEEEECCBSS----CCCEEECTTSCEEEEECT---------------TSSBEEEEEGG
T ss_pred             eEEEEeCCCC----ccCceECCCCCEEEEeCC---------------cCCcEEEEEee
Confidence            11 1222444    999999999999999993               46677778875

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.96  E-value=2.9e-05  Score=60.58  Aligned_cols=59  Identities=17%  Similarity=0.266  Sum_probs=43.2

Q ss_pred             CCceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            2 PGLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         2 p~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      |.++..|++++||+ |||+....+.|++++   |.. +..-....                                .++
T Consensus        27 ~~~~e~iAv~pdG~-l~vt~~~~~~I~~i~---p~g-~~~~~~~~--------------------------------~~~   69 (302)
T d2p4oa1          27 NTFLENLASAPDGT-IFVTNHEVGEIVSIT---PDG-NQQIHATV--------------------------------EGK   69 (302)
T ss_dssp             TCCEEEEEECTTSC-EEEEETTTTEEEEEC---TTC-CEEEEEEC--------------------------------SSE
T ss_pred             CCCcCCEEECCCCC-EEEEeCCCCEEEEEe---CCC-CEEEEEcC--------------------------------CCC
Confidence            34677899999998 899999999998887   322 22211121                                223


Q ss_pred             CceEEEccCCCEEEEEe
Q 031020           82 PQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaN   98 (167)
                      |..+++++||+ |||++
T Consensus        70 ~~gla~~~dG~-l~v~~   85 (302)
T d2p4oa1          70 VSGLAFTSNGD-LVATG   85 (302)
T ss_dssp             EEEEEECTTSC-EEEEE
T ss_pred             cceEEEcCCCC-eEEEe
Confidence            99999999998 88887

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.89  E-value=2.4e-05  Score=61.17  Aligned_cols=85  Identities=13%  Similarity=0.093  Sum_probs=60.7

Q ss_pred             EEEEecCCCEEEEEeCCC--------CcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccC
Q 031020            7 DFLISLDDRFLYFSNWLH--------GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRL   78 (167)
Q Consensus         7 dI~IS~DdRfLYVSnw~h--------g~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~   78 (167)
                      .+.+|+|++.+|+.+-..        ..|++||..   ..+.+.++..|+                            . 
T Consensus       268 ~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~---t~~~~~~~~~~~----------------------------~-  315 (368)
T d1mdah_         268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS---VGQTSGPISNGH----------------------------D-  315 (368)
T ss_dssp             CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS---SCCEEECCEEEE----------------------------E-
T ss_pred             eEEEcCCCCEEEEEecCCCceeecCCceEEEEECC---CCcEeEEecCCC----------------------------c-
Confidence            478999999999987543        348888854   467777777665                            2 


Q ss_pred             CCCCceEEEccCCC-EEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCCC
Q 031020           79 RGGPQMIQLSLDGK-RLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDG  147 (167)
Q Consensus        79 ~g~P~~~~LS~DGk-rLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~g  147 (167)
                         |..+++|+||+ +||++++               ..+.+..+|.  ++|+..  .  .|+.+..|.+
T Consensus       316 ---~~~~a~spDG~~~ly~s~~---------------~~~~v~v~D~--~tgk~~--~--~i~~g~~P~~  361 (368)
T d1mdah_         316 ---SDAIIAAQDGASDNYANSA---------------GTEVLDIYDA--ASDQDQ--S--SVELDKGPES  361 (368)
T ss_dssp             ---ECEEEECCSSSCEEEEEET---------------TTTEEEEEES--SSCEEE--E--ECCCCSCCCE
T ss_pred             ---eeEEEECCCCCEEEEEEeC---------------CCCeEEEEEC--CCCCEE--E--EEECCCCCCE
Confidence               89999999998 5899994               3556776766  788752  1  1445555554

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=4.4e-05  Score=58.58  Aligned_cols=64  Identities=22%  Similarity=0.242  Sum_probs=47.5

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .++.|.+|+|+++|+.+.  .|.|++||++.....+...+....+                             ..+.-.
T Consensus        53 ~V~~v~fs~~g~~latg~--dg~V~iWd~~~~~~~~~~~~~~~~~-----------------------------h~~~I~  101 (337)
T d1gxra_          53 VVCAVTISNPTRHVYTGG--KGCVKVWDISHPGNKSPVSQLDCLN-----------------------------RDNYIR  101 (337)
T ss_dssp             CCCEEEECSSSSEEEEEC--BSEEEEEETTSTTCCSCSEEEECSC-----------------------------TTSBEE
T ss_pred             cEEEEEECCCCCEEEEEE--CCEEEEEEccCCcccceeEEeeecC-----------------------------CCCcEE
Confidence            468899999999998654  7899999999766655554444333                             011246


Q ss_pred             eEEEccCCCEEEEEe
Q 031020           84 MIQLSLDGKRLYVTN   98 (167)
Q Consensus        84 ~~~LS~DGkrLyVaN   98 (167)
                      -+++||||++|+++.
T Consensus       102 ~v~~s~dg~~l~s~~  116 (337)
T d1gxra_         102 SCKLLPDGCTLIVGG  116 (337)
T ss_dssp             EEEECTTSSEEEEEE
T ss_pred             EEEEcCCCCEEEEee
Confidence            789999999998876

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.85  E-value=1.4e-05  Score=69.42  Aligned_cols=63  Identities=16%  Similarity=0.036  Sum_probs=51.9

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEE---------------EEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCC
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIR---------------QYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSD   69 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~---------------qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~   69 (167)
                      +-.+++|+|+|++||.|+..+.+.               .|...|+.+.+...||.+++                     
T Consensus       118 phgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~---------------------  176 (441)
T d1qnia2         118 IHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDG---------------------  176 (441)
T ss_dssp             EEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESS---------------------
T ss_pred             ccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecCC---------------------
Confidence            567899999999999999877763               34445577777888888877                     


Q ss_pred             CccccCccCCCCCceEEEccCCCEEEEEeC
Q 031020           70 VPEVQGHRLRGGPQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        70 ~~~~~g~~~~g~P~~~~LS~DGkrLyVaNs   99 (167)
                             .    |+.+.+|+|||++|++|.
T Consensus       177 -------~----p~~v~~spdGk~a~vt~~  195 (441)
T d1qnia2         177 -------N----LDNTDADYTGKYATSTCY  195 (441)
T ss_dssp             -------C----CCCEEECSSSSEEEEEES
T ss_pred             -------C----ccceEECCCCCEEEEEec
Confidence                   3    999999999999999983

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.73  E-value=0.00011  Score=58.18  Aligned_cols=30  Identities=30%  Similarity=0.436  Sum_probs=24.5

Q ss_pred             CceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeC
Q 031020           82 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNS  126 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~  126 (167)
                      |+-+++|+||++|||+++               ....+.++|++.
T Consensus       179 pnGia~s~dg~~lyvad~---------------~~~~I~~~d~~~  208 (319)
T d2dg1a1         179 ANGIALSTDEKVLWVTET---------------TANRLHRIALED  208 (319)
T ss_dssp             EEEEEECTTSSEEEEEEG---------------GGTEEEEEEECT
T ss_pred             eeeeeeccccceEEEecc---------------cCCceEEEEEcC
Confidence            999999999999999994               355677777653

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.57  E-value=0.00029  Score=57.89  Aligned_cols=63  Identities=16%  Similarity=0.142  Sum_probs=51.3

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      ++-.|++|+|+++||||....+.|++|++..+...+....+.++|                                .|-
T Consensus       207 ~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~--------------------------------~pD  254 (340)
T d1v04a_         207 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDT--------------------------------LVD  254 (340)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSS--------------------------------EEE
T ss_pred             ccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCC--------------------------------CCC
Confidence            567899999999999999999999999998655555566666655                                399


Q ss_pred             eEEEccCCCEEEEEe
Q 031020           84 MIQLSLDGKRLYVTN   98 (167)
Q Consensus        84 ~~~LS~DGkrLyVaN   98 (167)
                      .+.+.+++..|+++.
T Consensus       255 Ni~~d~~~g~lwva~  269 (340)
T d1v04a_         255 NISVDPVTGDLWVGC  269 (340)
T ss_dssp             EEEECTTTCCEEEEE
T ss_pred             ccEEecCCCEEEEEE
Confidence            999987666777776

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00051  Score=53.78  Aligned_cols=102  Identities=14%  Similarity=0.198  Sum_probs=69.8

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+++|+|.+.++.||++....+.|..++++- .+.+.+   ..+.                              .+.+.
T Consensus       165 ~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG-~~~~~~---~~~~------------------------------~~~~~  210 (266)
T d1ijqa1         165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTI---LEDE------------------------------KRLAH  210 (266)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEE---EECT------------------------------TTTSS
T ss_pred             eeeEEEeeccccEEEEecCCcCEEEEEECCC-CCEEEE---EeCC------------------------------Ccccc
Confidence            4789999999999999999999999999853 222222   1111                              01145


Q ss_pred             eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCCCCcceeeeecCCC
Q 031020           84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGG  159 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~gp~~~he~r~pgg  159 (167)
                      -+.|+.++.+||+|+.               ....+.+++.  .+|.   +...+..--..|.|-...|+.+=|-|
T Consensus       211 p~~lav~~~~ly~td~---------------~~~~I~~~~~--~~g~---~~~~~~~~~~~p~~i~v~~~~~QP~g  266 (266)
T d1ijqa1         211 PFSLAVFEDKVFWTDI---------------INEAIFSANR--LTGS---DVNLLAENLLSPEDMVLFHNLTQPRG  266 (266)
T ss_dssp             EEEEEEETTEEEEEET---------------TTTEEEEEET--TTCC---CCEEEECSCSCCCCEEEESGGGSCCC
T ss_pred             cEEEEEECCEEEEEEC---------------CCCeEEEEEC--CCCc---ceEEEEcCCCCceEEEEECCccCCCC
Confidence            5667777999999993               4668888875  5554   22333333346888778899888765

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.44  E-value=0.00038  Score=51.58  Aligned_cols=62  Identities=13%  Similarity=0.026  Sum_probs=43.0

Q ss_pred             CceeEEEEecCCCEEEEEeCCC-CcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLH-GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~h-g~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      .-+.++..|||||+|++++-.. ..|++||...   .++. ++. +                              ..+.
T Consensus        43 ~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~---~~~~-~~~-~------------------------------~~~~   87 (360)
T d1k32a3          43 LRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT---GKAE-KFE-E------------------------------NLGN   87 (360)
T ss_dssp             SCEEEEEECSSSEEEEEEEETTEEEEEEEETTT---CCEE-ECC-C------------------------------CCCS
T ss_pred             CCEEEEEECCCCCEEEEEEcCCCCEEEEEECCC---CcEE-Eee-C------------------------------CCce
Confidence            4578999999999998766444 4688998764   2221 111 1                              1223


Q ss_pred             CceEEEccCCCEEEEEeC
Q 031020           82 PQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaNs   99 (167)
                      ...+++||||++|+.+..
T Consensus        88 v~~~~~spdg~~l~~~~~  105 (360)
T d1k32a3          88 VFAMGVDRNGKFAVVAND  105 (360)
T ss_dssp             EEEEEECTTSSEEEEEET
T ss_pred             EEeeeecccccccceecc
Confidence            788999999999999873

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.42  E-value=0.00019  Score=54.67  Aligned_cols=71  Identities=7%  Similarity=0.127  Sum_probs=49.9

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+.+|.++++|+ ||||+|..+.|..|+... ...    ++.....+                         ..    |.
T Consensus       183 ~p~gi~~d~~g~-l~vsd~~~~~i~~~~~~~-~~~----~~~~~~~~-------------------------~~----P~  227 (260)
T d1rwia_         183 APWGIAVDEAGT-VYVTEHNTNQVVKLLAGS-TTS----TVLPFTGL-------------------------NT----PL  227 (260)
T ss_dssp             SEEEEEECTTCC-EEEEETTTTEEEEECTTC-SCC----EECCCCSC-------------------------CC----EE
T ss_pred             CCccceeeeeee-eeeeecCCCEEEEEeCCC-CeE----EEEccCCC-------------------------CC----eE
Confidence            467899999985 899999999999987442 111    11111100                         12    99


Q ss_pred             eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEee
Q 031020           84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN  125 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD  125 (167)
                      .+++++||. ||||++               ++..|.+|+.-
T Consensus       228 ~i~~d~~g~-l~vad~---------------~~~rI~~i~~~  253 (260)
T d1rwia_         228 AVAVDSDRT-VYVADR---------------GNDRVVKLTSL  253 (260)
T ss_dssp             EEEECTTCC-EEEEEG---------------GGTEEEEECCC
T ss_pred             EEEEeCCCC-EEEEEC---------------CCCEEEEEeCC
Confidence            999999995 899993               56788888753

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.34  E-value=0.00051  Score=53.23  Aligned_cols=59  Identities=19%  Similarity=0.231  Sum_probs=44.2

Q ss_pred             EEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEE
Q 031020            7 DFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQ   86 (167)
Q Consensus         7 dI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~   86 (167)
                      ..-|+.|+.+||+++...+.|..|+++.....+.. ++..++                               +.|.-|+
T Consensus       167 ~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~-------------------------------~~pdgia  214 (302)
T d2p4oa1         167 ANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP-EIFVEQ-------------------------------TNIDDFA  214 (302)
T ss_dssp             EEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCC-EEEEES-------------------------------CCCSSEE
T ss_pred             cccccccCCceeeecCCCCeEEecccccccccccc-ccccCC-------------------------------CCCcceE
Confidence            34567889999999999999999999864433332 222222                               1299999


Q ss_pred             EccCCCEEEEEe
Q 031020           87 LSLDGKRLYVTN   98 (167)
Q Consensus        87 LS~DGkrLyVaN   98 (167)
                      +++||+ ||||+
T Consensus       215 ~d~dG~-l~va~  225 (302)
T d2p4oa1         215 FDVEGN-LYGAT  225 (302)
T ss_dssp             EBTTCC-EEEEC
T ss_pred             ECCCCC-EEEEE
Confidence            999996 89988

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.28  E-value=0.00083  Score=53.30  Aligned_cols=81  Identities=19%  Similarity=0.317  Sum_probs=54.2

Q ss_pred             eeEEEEecCCC----EEEEEeCCCCcEEEEeccCCCCCeEEE-EEEeCceeecCCceeEeeCCCCCCCCCCccccCccCC
Q 031020            5 ITDFLISLDDR----FLYFSNWLHGDIRQYNIEDPKNPVLTG-QIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR   79 (167)
Q Consensus         5 ~tdI~IS~DdR----fLYVSnw~hg~I~qyDIsdp~~pklvg-~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~   79 (167)
                      +-.|++|+|+.    +|||+....+.|++||+..+.  ++.. +++.  .+                       .+ ...
T Consensus       174 pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g--~~~~~~~~~--~~-----------------------~~-~~~  225 (314)
T d1pjxa_         174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPA--KIENKKVWG--HI-----------------------PG-THE  225 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETT--EEEEEEEEE--EC-----------------------CC-CSS
T ss_pred             eeeeEECCCCCcceeEEEEEeecccceEEeeccCcc--ccceeeEEE--Ec-----------------------cc-ccc
Confidence            34789999875    899999999999999987532  2321 1211  00                       00 112


Q ss_pred             CCCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe
Q 031020           80 GGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM  131 (167)
Q Consensus        80 g~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l  131 (167)
                      ++|.-|++..+|+ ||||+.               .++.+.++|.  ++|.+
T Consensus       226 ~~pdGiavD~~Gn-lyVa~~---------------~~g~I~~~dp--~~g~~  259 (314)
T d1pjxa_         226 GGADGMDFDEDNN-LLVANW---------------GSSHIEVFGP--DGGQP  259 (314)
T ss_dssp             CEEEEEEEBTTCC-EEEEEE---------------TTTEEEEECT--TCBSC
T ss_pred             ccceeeEEecCCc-EEEEEc---------------CCCEEEEEeC--CCCEE
Confidence            4599999999996 899983               4567777754  55543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.23  E-value=0.00043  Score=60.96  Aligned_cols=99  Identities=15%  Similarity=0.211  Sum_probs=57.4

Q ss_pred             CCceeEEEEecCCCEEEEEeCCCC--------------cEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCC
Q 031020            2 PGLITDFLISLDDRFLYFSNWLHG--------------DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQ   67 (167)
Q Consensus         2 p~l~tdI~IS~DdRfLYVSnw~hg--------------~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~   67 (167)
                      ++-+.++.+|+|||++|++|-..+              -|.+|++..     ...-+.- |.+..-..|+|+...+....
T Consensus       192 ~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~r-----ie~av~~-Gk~~eingV~VVD~~~~~~~  265 (459)
T d1fwxa2         192 SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE-----IEKAIAA-GDYQELNGVKVVDGRKEASS  265 (459)
T ss_dssp             SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH-----HHHHHHH-TCSEEETTEEEEECSGG--C
T ss_pred             CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHH-----hHHhhhc-CCcEEeCCceeecccccCCc
Confidence            555678999999999999986532              233333211     0000001 11112234666655433222


Q ss_pred             CCC-ccccCccCCCCCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEee
Q 031020           68 SDV-PEVQGHRLRGGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN  125 (167)
Q Consensus        68 p~~-~~~~g~~~~g~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD  125 (167)
                      .-. -.+-|+.    |.-+.+|||||++||+|               +-..++-.+|+.
T Consensus       266 ~v~~yIPVpKs----PHGV~vSPDGKyi~VaG---------------KLs~tVSViD~~  305 (459)
T d1fwxa2         266 LFTRYIPIANN----PHGCNMAPDKKHLCVAG---------------KLSPTVTVLDVT  305 (459)
T ss_dssp             SSEEEEEEESS----CCCEEECTTSSEEEEEC---------------TTSSBEEEEEGG
T ss_pred             ceeEEEecCCC----CCceEECCCCCEEEEeC---------------CcCCcEEEEEeh
Confidence            221 1223444    99999999999999999               346677778884

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.22  E-value=0.00024  Score=54.08  Aligned_cols=70  Identities=13%  Similarity=0.203  Sum_probs=49.7

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      +.+|.++++++ ||++++..+.|.+||.+.  +.+.+  +...+                              -+.|.-
T Consensus       142 p~~i~~~~~g~-~~v~~~~~~~i~~~d~~~--~~~~~--~~~~~------------------------------~~~p~g  186 (260)
T d1rwia_         142 PDGVAVDNSGN-VYVTDTDNNRVVKLEAES--NNQVV--LPFTD------------------------------ITAPWG  186 (260)
T ss_dssp             CCEEEECTTCC-EEEEEGGGTEEEEECTTT--CCEEE--CCCSS------------------------------CCSEEE
T ss_pred             cceeeecCCCC-Eeeecccccccccccccc--ceeee--eeccc------------------------------cCCCcc
Confidence            57899999997 899999999999998553  11111  11111                              123999


Q ss_pred             EEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEee
Q 031020           85 IQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVN  125 (167)
Q Consensus        85 ~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD  125 (167)
                      ++++++|+ |||+++               .+..+++++.+
T Consensus       187 i~~d~~g~-l~vsd~---------------~~~~i~~~~~~  211 (260)
T d1rwia_         187 IAVDEAGT-VYVTEH---------------NTNQVVKLLAG  211 (260)
T ss_dssp             EEECTTCC-EEEEET---------------TTTEEEEECTT
T ss_pred             ceeeeeee-eeeeec---------------CCCEEEEEeCC
Confidence            99999985 899993               46677777654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.17  E-value=0.00038  Score=51.63  Aligned_cols=53  Identities=11%  Similarity=0.098  Sum_probs=37.3

Q ss_pred             EEEec-CCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEE
Q 031020            8 FLISL-DDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQ   86 (167)
Q Consensus         8 I~IS~-DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~   86 (167)
                      --+|| ||+++-.+.+  |.|.+||+..   .+.+ ++  +-                              .+..+.++
T Consensus         8 ~~fSP~dG~~~a~~~~--g~v~v~d~~~---~~~~-~~--~~------------------------------~~~v~~~~   49 (360)
T d1k32a3           8 EDFSPLDGDLIAFVSR--GQAFIQDVSG---TYVL-KV--PE------------------------------PLRIRYVR   49 (360)
T ss_dssp             EEEEECGGGCEEEEET--TEEEEECTTS---SBEE-EC--SC------------------------------CSCEEEEE
T ss_pred             ccccCCCCCEEEEEEC--CeEEEEECCC---CcEE-Ec--cC------------------------------CCCEEEEE
Confidence            44899 9999876654  7899999864   2222 22  11                              11278899


Q ss_pred             EccCCCEEEEEe
Q 031020           87 LSLDGKRLYVTN   98 (167)
Q Consensus        87 LS~DGkrLyVaN   98 (167)
                      +|||||+|+++.
T Consensus        50 ~spDg~~l~~~~   61 (360)
T d1k32a3          50 RGGDTKVAFIHG   61 (360)
T ss_dssp             ECSSSEEEEEEE
T ss_pred             ECCCCCEEEEEE
Confidence            999999998876

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.12  E-value=0.003  Score=49.37  Aligned_cols=93  Identities=17%  Similarity=0.155  Sum_probs=60.5

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+++|+|.+.++.||+++...+.|..++++..    -...|..|-                           .+    |.
T Consensus       168 ~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~----~~~~v~~~~---------------------------~~----P~  212 (263)
T d1npea_         168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP----GRRKVLEGL---------------------------QY----PF  212 (263)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTEE----EEEEEEECC---------------------------CS----EE
T ss_pred             ccceEEEeecCcEEEEEeCCCCEEEEEECCCC----CeEEEECCC---------------------------CC----cE
Confidence            46899999999999999999999999998641    111222221                           12    54


Q ss_pred             eEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCCCCccee
Q 031020           84 MIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAH  152 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~gp~~~h  152 (167)
                        .|+.++.+||+|+.               .+..|+++|.  .+|+..  .-++---...|.|-..+|
T Consensus       213 --~lav~~~~lYwtd~---------------~~~~I~~~~~--~~g~~~--~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         213 --AVTSYGKNLYYTDW---------------KTNSVIAMDL--AISKEM--DTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             --EEEEETTEEEEEET---------------TTTEEEEEET--TTTEEE--EEECCSSCCCCCCEEEEC
T ss_pred             --EEEEECCEEEEEEC---------------CCCEEEEEEC--CCCccc--eEECCCCCCCcceEEEeC
Confidence              55557999999993               5678888887  566531  111112233566655555

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.10  E-value=0.002  Score=50.58  Aligned_cols=50  Identities=20%  Similarity=0.351  Sum_probs=38.0

Q ss_pred             CceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccCCCC
Q 031020           82 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPD  146 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~~p~  146 (167)
                      |+-+.+|+|+++||++.+               ....+.++++|.+.+...-....++++..++.
T Consensus       150 ~Ng~~~s~d~~~l~~~dt---------------~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g  199 (295)
T d2ghsa1         150 PNSICFSPDGTTGYFVDT---------------KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKG  199 (295)
T ss_dssp             EEEEEECTTSCEEEEEET---------------TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSS
T ss_pred             cceeeecCCCceEEEeec---------------ccceeeEeeecccccccccceEEEeccCcccc
Confidence            899999999999999994               46788888888766665444556677755443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.03  E-value=0.0034  Score=47.95  Aligned_cols=60  Identities=8%  Similarity=0.022  Sum_probs=45.4

Q ss_pred             ceeEEEEecCCCEEEEEeCC-CCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWL-HGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~-hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      .+.+|++.++|+ |||+.+. +..|.+|+-    +.+++..+..++.                         +..    |
T Consensus       201 ~P~giavD~~G~-i~Vad~~~~~~v~~f~~----~G~~~~~~~~~~~-------------------------~~~----p  246 (279)
T d1q7fa_         201 YPIGVGINSNGE-ILIADNHNNFNLTIFTQ----DGQLISALESKVK-------------------------HAQ----C  246 (279)
T ss_dssp             SEEEEEECTTCC-EEEEECSSSCEEEEECT----TSCEEEEEEESSC-------------------------CSC----E
T ss_pred             CCcccccccCCe-EEEEECCCCcEEEEECC----CCCEEEEEeCCCC-------------------------CCC----E
Confidence            478999999997 9999875 456888872    3667777765542                         123    9


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      ..+++++||+ ||||+
T Consensus       247 ~~vav~~dG~-l~V~~  261 (279)
T d1q7fa_         247 FDVALMDDGS-VVLAS  261 (279)
T ss_dssp             EEEEEETTTE-EEEEE
T ss_pred             eEEEEeCCCc-EEEEe
Confidence            9999999995 89987

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.95  E-value=0.0019  Score=50.56  Aligned_cols=62  Identities=13%  Similarity=0.207  Sum_probs=43.4

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCc--EEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGD--IRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~--I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      -+.+|++.|...+||+++|+.+.  |.+.+.+-. +.+..   ...+                              -+.
T Consensus       123 ~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~-~~~~i---~~~~------------------------------~~~  168 (263)
T d1npea_         123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRIL---AQDN------------------------------LGL  168 (263)
T ss_dssp             SEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEE---ECTT------------------------------CSC
T ss_pred             CCcEEEEecccCcEEEeecCCCCcEEEEecCCCC-Cceee---eeec------------------------------ccc
Confidence            46899999999999999998654  665555421 11111   1111                              123


Q ss_pred             CceEEEccCCCEEEEEeC
Q 031020           82 PQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaNs   99 (167)
                      |.-+++++.++|||++++
T Consensus       169 P~glaiD~~~~~lYw~d~  186 (263)
T d1npea_         169 PNGLTFDAFSSQLCWVDA  186 (263)
T ss_dssp             EEEEEEETTTTEEEEEET
T ss_pred             cceEEEeecCcEEEEEeC
Confidence            999999999999999994

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.002  Score=50.22  Aligned_cols=62  Identities=19%  Similarity=0.321  Sum_probs=44.2

Q ss_pred             ceeEEEEecCCCEEEEEeCCC-CcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWLH-GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~h-g~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      -+.+|++.+..++||+++|+. +.|.+.+.+.. +.+   .+...+                              ...|
T Consensus       121 ~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs-~~~---~l~~~~------------------------------~~~p  166 (266)
T d1ijqa1         121 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIY---SLVTEN------------------------------IQWP  166 (266)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEE---EEECSS------------------------------CSCE
T ss_pred             CcceEEEEcccCeEEEeccCCCcceeEeccCCC-cee---cccccc------------------------------ccee
Confidence            367899999999999999975 46777776431 111   111111                              0239


Q ss_pred             ceEEEccCCCEEEEEeC
Q 031020           83 QMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNs   99 (167)
                      ..+++++.+++||++++
T Consensus       167 ~gl~iD~~~~~lYw~d~  183 (266)
T d1ijqa1         167 NGITLDLLSGRLYWVDS  183 (266)
T ss_dssp             EEEEEETTTTEEEEEET
T ss_pred             eEEEeeccccEEEEecC
Confidence            99999999999999994

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.91  E-value=0.0023  Score=46.46  Aligned_cols=57  Identities=19%  Similarity=0.299  Sum_probs=37.9

Q ss_pred             CCCceeEEEEecC--CCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccC
Q 031020            1 MPGLITDFLISLD--DRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRL   78 (167)
Q Consensus         1 ~p~l~tdI~IS~D--dRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~   78 (167)
                      ||.+    .+|||  |+++.+..  .|+|+.+|+.. ..++   ++..+.                              
T Consensus         1 ~~~~----~~sPdi~G~~v~f~~--~~dl~~~d~~~-g~~~---~Lt~~~------------------------------   40 (281)
T d1k32a2           1 MPNL----LLNPDIHGDRIIFVC--CDDLWEHDLKS-GSTR---KIVSNL------------------------------   40 (281)
T ss_dssp             CCCC----CEEEEEETTEEEEEE--TTEEEEEETTT-CCEE---EEECSS------------------------------
T ss_pred             CCCc----ccCCCCCCCEEEEEe--CCcEEEEECCC-CCEE---EEecCC------------------------------
Confidence            6666    68999  88887664  46899999874 2222   333221                              


Q ss_pred             CCCCceEEEccCCCEEEEEe
Q 031020           79 RGGPQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        79 ~g~P~~~~LS~DGkrLyVaN   98 (167)
                       +.-...++||||++|+.+.
T Consensus        41 -~~~~~p~~SPDG~~iaf~~   59 (281)
T d1k32a2          41 -GVINNARFFPDGRKIAIRV   59 (281)
T ss_dssp             -SEEEEEEECTTSSEEEEEE
T ss_pred             -CcccCEEECCCCCEEEEEE
Confidence             1145668999999997653

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.89  E-value=0.0016  Score=46.48  Aligned_cols=59  Identities=15%  Similarity=0.211  Sum_probs=43.1

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCce
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQM   84 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~   84 (167)
                      +..|.+||++++|. |+-..|.|++||+..   .+...++..+.                                ....
T Consensus       254 v~~l~~sp~~~~la-sg~~Dg~v~vWD~~~---~~~l~~~~~~~--------------------------------~~~~  297 (342)
T d1yfqa_         254 VNSIEFSPRHKFLY-TAGSDGIISCWNLQT---RKKIKNFAKFN--------------------------------EDSV  297 (342)
T ss_dssp             EEEEEECTTTCCEE-EEETTSCEEEEETTT---TEEEEECCCCS--------------------------------SSEE
T ss_pred             ceeEEecCCccEEE-EECCCCEEEEEECCC---CcEEEEecCCC--------------------------------CCEE
Confidence            57899999999985 444689999999875   44444433221                                1456


Q ss_pred             EEEccCCCEEEEEeC
Q 031020           85 IQLSLDGKRLYVTNS   99 (167)
Q Consensus        85 ~~LS~DGkrLyVaNs   99 (167)
                      ++++++|+.|.+|.+
T Consensus       298 ~~~s~~~~~l~~a~s  312 (342)
T d1yfqa_         298 VKIACSDNILCLATS  312 (342)
T ss_dssp             EEEEECSSEEEEEEE
T ss_pred             EEEEeCCCEEEEEEc
Confidence            889999999999865

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.77  E-value=0.0084  Score=43.35  Aligned_cols=61  Identities=11%  Similarity=0.019  Sum_probs=45.3

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      +-|++|.+|+|+++|..+ -..|.|++||+..   .+.+..+....                               +.-
T Consensus        56 ~~I~~l~~s~~~~~l~sg-s~Dg~v~iWd~~~---~~~~~~~~~~~-------------------------------~~v  100 (340)
T d1tbga_          56 AKIYAMHWGTDSRLLVSA-SQDGKLIIWDSYT---TNKVHAIPLRS-------------------------------SWV  100 (340)
T ss_dssp             SCEEEEEECTTSSEEEEE-ETTTEEEEEETTT---TEEEEEEECSC-------------------------------SCE
T ss_pred             CCEEEEEECCCCCEEEEE-ECCCceeeeeccc---ceeEEEEeccc-------------------------------ccE
Confidence            358899999999998655 4678999999764   55555554221                               125


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      ..++++++|++|+++.
T Consensus       101 ~~v~~~~~~~~l~~~~  116 (340)
T d1tbga_         101 MTCAYAPSGNYVACGG  116 (340)
T ss_dssp             EEEEECTTSSEEEEEE
T ss_pred             EeeEeeccceeeeeec
Confidence            7788999999998876

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.0079  Score=45.50  Aligned_cols=60  Identities=7%  Similarity=-0.001  Sum_probs=43.8

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      ..++.|.+|+|+++|+.+++ .|.|+.||+..   .+.+.+..-                                .+..
T Consensus       266 ~~i~~v~~s~~g~~l~s~s~-Dg~i~iwd~~~---~~~~~~~~~--------------------------------~~~v  309 (337)
T d1gxra_         266 SCVLSLKFAYCGKWFVSTGK-DNLLNAWRTPY---GASIFQSKE--------------------------------SSSV  309 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEET-TSEEEEEETTT---CCEEEEEEC--------------------------------SSCE
T ss_pred             cccceEEECCCCCEEEEEeC-CCeEEEEECCC---CCEEEEccC--------------------------------CCCE
Confidence            35789999999999977664 68999999765   333333221                                1126


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      ..+++|+||++|+++.
T Consensus       310 ~~~~~s~d~~~l~t~s  325 (337)
T d1gxra_         310 LSCDISVDDKYIVTGS  325 (337)
T ss_dssp             EEEEECTTSCEEEEEE
T ss_pred             EEEEEeCCCCEEEEEe
Confidence            7789999999998876

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.67  E-value=0.014  Score=42.06  Aligned_cols=63  Identities=10%  Similarity=0.027  Sum_probs=44.3

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      ..++.|.+|||+++|++++ ..+.|+.||+..   .+.........                             ....-
T Consensus       227 ~~i~~v~~~p~~~~l~s~s-~d~~i~~~~~~~---~~~~~~~~~~~-----------------------------~~~~i  273 (340)
T d1tbga_         227 SDINAICFFPNGNAFATGS-DDATCRLFDLRA---DQELMTYSHDN-----------------------------IICGI  273 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEE-TTSCEEEEETTT---TEEEEEECCTT-----------------------------CCSCE
T ss_pred             CCeEEEEECCCCCEEEEEe-CCCeEEEEeecc---ccccccccccc-----------------------------ccCce
Confidence            3478899999999997766 578999999875   33332221111                             11225


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      ..+++|++|++|+++.
T Consensus       274 ~~~~~s~~~~~l~~g~  289 (340)
T d1tbga_         274 TSVSFSKSGRLLLAGY  289 (340)
T ss_dssp             EEEEECSSSCEEEEEE
T ss_pred             EEEEECCCCCEEEEEE
Confidence            6789999999999987

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.66  E-value=0.0063  Score=45.70  Aligned_cols=77  Identities=16%  Similarity=0.101  Sum_probs=43.3

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCc-cccCccCCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVP-EVQGHRLRGGP   82 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~-~~~g~~~~g~P   82 (167)
                      .++.|.+|+||++|..+.  ++.|++||+.+   .++..++........              .++.. ..........-
T Consensus        64 ~V~~l~fs~dg~~lasg~--d~~i~iW~~~~---~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~V  124 (388)
T d1erja_          64 VVCCVKFSNDGEYLATGC--NKTTQVYRVSD---GSLVARLSDDSAANK--------------DPENLNTSSSPSSDLYI  124 (388)
T ss_dssp             CCCEEEECTTSSEEEEEC--BSCEEEEETTT---CCEEEEECC-------------------------------CCCCBE
T ss_pred             cEEEEEECCCCCEEEEEe--CCeEEEEEecc---cceEeeecccccccc--------------cccccccccccCCCCCE
Confidence            467899999999986653  78999999876   444444332211000              00000 00000011123


Q ss_pred             ceEEEccCCCEEEEEeC
Q 031020           83 QMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNs   99 (167)
                      +.+++|+||++|+++.+
T Consensus       125 ~~l~~s~~~~~l~s~~~  141 (388)
T d1erja_         125 RSVCFSPDGKFLATGAE  141 (388)
T ss_dssp             EEEEECTTSSEEEEEET
T ss_pred             EEEEECCCCCcceeccc
Confidence            56889999999998763

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.61  E-value=0.0035  Score=47.89  Aligned_cols=61  Identities=13%  Similarity=0.231  Sum_probs=44.7

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+.+|.+++++ .||++.+..+.|.+|+.+    .++..++..-|.                             -..|+
T Consensus       158 ~~~~i~~d~~g-~i~v~d~~~~~V~~~d~~----G~~~~~~g~~g~-----------------------------~~~P~  203 (279)
T d1q7fa_         158 FPNGVVVNDKQ-EIFISDNRAHCVKVFNYE----GQYLRQIGGEGI-----------------------------TNYPI  203 (279)
T ss_dssp             SEEEEEECSSS-EEEEEEGGGTEEEEEETT----CCEEEEESCTTT-----------------------------SCSEE
T ss_pred             ccceeeeccce-eEEeeeccccceeeeecC----Cceeeeeccccc-----------------------------ccCCc
Confidence            46788999888 589999999999999854    234444422121                             11399


Q ss_pred             eEEEccCCCEEEEEeC
Q 031020           84 MIQLSLDGKRLYVTNS   99 (167)
Q Consensus        84 ~~~LS~DGkrLyVaNs   99 (167)
                      -++++++|+ ||||++
T Consensus       204 giavD~~G~-i~Vad~  218 (279)
T d1q7fa_         204 GVGINSNGE-ILIADN  218 (279)
T ss_dssp             EEEECTTCC-EEEEEC
T ss_pred             ccccccCCe-EEEEEC
Confidence            999999997 999984

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.0057  Score=43.54  Aligned_cols=31  Identities=23%  Similarity=0.542  Sum_probs=26.7

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDP   35 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp   35 (167)
                      -|++|.+|||+++|.++.+ .+.|++||+...
T Consensus        13 ~I~~l~fsp~~~~L~s~s~-Dg~v~iwd~~~~   43 (342)
T d1yfqa_          13 YISDIKIIPSKSLLLITSW-DGSLTVYKFDIQ   43 (342)
T ss_dssp             CEEEEEEEGGGTEEEEEET-TSEEEEEEEETT
T ss_pred             CEEEEEEeCCCCEEEEEEC-CCeEEEEEccCC
Confidence            3799999999999988774 789999999753

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.59  E-value=0.0074  Score=46.57  Aligned_cols=62  Identities=11%  Similarity=0.104  Sum_probs=43.4

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -|+.+.+|||+++|.++. ..+.|++||++. ...+.+..+  .|                             ..+.-+
T Consensus         9 pIt~~~~s~dg~~la~~~-~~~~i~iw~~~~-~~~~~~~~l--~g-----------------------------H~~~V~   55 (371)
T d1k8kc_           9 PISCHAWNKDRTQIAICP-NNHEVHIYEKSG-NKWVQVHEL--KE-----------------------------HNGQVT   55 (371)
T ss_dssp             CCCEEEECTTSSEEEEEC-SSSEEEEEEEET-TEEEEEEEE--EC-----------------------------CSSCEE
T ss_pred             CeEEEEECCCCCEEEEEe-CCCEEEEEECCC-CCEEEEEEe--cC-----------------------------CCCCEE
Confidence            378999999999997664 467899999864 222333222  22                             122367


Q ss_pred             eEEEccCCCEEEEEe
Q 031020           84 MIQLSLDGKRLYVTN   98 (167)
Q Consensus        84 ~~~LS~DGkrLyVaN   98 (167)
                      .+++||||++|..+.
T Consensus        56 ~l~fsp~~~~l~s~s   70 (371)
T d1k8kc_          56 GVDWAPDSNRIVTCG   70 (371)
T ss_dssp             EEEEETTTTEEEEEE
T ss_pred             EEEECCCCCEEEEEE
Confidence            899999999988775

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.50  E-value=0.0038  Score=48.87  Aligned_cols=77  Identities=13%  Similarity=0.240  Sum_probs=52.9

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEE--EEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTG--QIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg--~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      .+..+.+|+|++.||++.-..+.|.+|+++. ......+  .++.-                           .....|.
T Consensus       149 ~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~-~~~~~~~~~~~~~~---------------------------~~~~~g~  200 (295)
T d2ghsa1         149 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDA-RTGLPTGKAEVFID---------------------------STGIKGG  200 (295)
T ss_dssp             SEEEEEECTTSCEEEEEETTTCEEEEEEBCT-TTCCBSSCCEEEEE---------------------------CTTSSSE
T ss_pred             CcceeeecCCCceEEEeecccceeeEeeecc-cccccccceEEEec---------------------------cCccccc
Confidence            3567899999999999999999999999863 2221111  11110                           0012355


Q ss_pred             CceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEe
Q 031020           82 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDV  124 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dv  124 (167)
                      |.-+++..+|. ||||.               -.++.+.++|-
T Consensus       201 pdG~~vD~~Gn-lWva~---------------~~~g~V~~~dp  227 (295)
T d2ghsa1         201 MDGSVCDAEGH-IWNAR---------------WGEGAVDRYDT  227 (295)
T ss_dssp             EEEEEECTTSC-EEEEE---------------ETTTEEEEECT
T ss_pred             ccceEEcCCCC-EEeee---------------eCCCceEEecC
Confidence            99999999995 89987               23666777765

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.49  E-value=0.0028  Score=55.68  Aligned_cols=63  Identities=13%  Similarity=0.145  Sum_probs=46.5

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccC-------CCCCe--EEEEEEeCceeecCCceeEeeCCCCCCCCCCcccc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIED-------PKNPV--LTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQ   74 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd-------p~~pk--lvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~   74 (167)
                      .+=.|.+||||||+||||-+...+.+||++.       ...|+  +++++.+                            
T Consensus       276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~el----------------------------  327 (459)
T d1fwxa2         276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL----------------------------  327 (459)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBC----------------------------
T ss_pred             CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeeccc----------------------------
Confidence            3457899999999999999999999999972       22221  2333332                            


Q ss_pred             CccCCCCCceEEEccCCCEEEEEeC
Q 031020           75 GHRLRGGPQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        75 g~~~~g~P~~~~LS~DGkrLyVaNs   99 (167)
                          -=||-.-+++.+| ..|+|.-
T Consensus       328 ----glgPLht~fd~~g-~aytslf  347 (459)
T d1fwxa2         328 ----GLGPLHTAFDGRG-NAYTSLF  347 (459)
T ss_dssp             ----CSCEEEEEECTTS-EEEEEET
T ss_pred             ----CcCccccccCCCc-eEEEEee
Confidence                2359999999988 6888863

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.47  E-value=0.0086  Score=45.81  Aligned_cols=64  Identities=17%  Similarity=0.185  Sum_probs=45.2

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      ..++.+.+||||++|..+. .+|.|+.||+...... +...+.  +                             ..+..
T Consensus        59 ~~v~~~~~sp~g~~latg~-~dg~i~iwd~~~~~~~-~~~~~~--~-----------------------------~~~~v  105 (311)
T d1nr0a1          59 HQTTVAKTSPSGYYCASGD-VHGNVRIWDTTQTTHI-LKTTIP--V-----------------------------FSGPV  105 (311)
T ss_dssp             SCEEEEEECTTSSEEEEEE-TTSEEEEEESSSTTCC-EEEEEE--C-----------------------------SSSCE
T ss_pred             CCEEEEEEeCCCCeEeccc-cCceEeeeeeeccccc-cccccc--c-----------------------------ccCcc
Confidence            4578999999999996655 4789999998863322 222221  1                             11236


Q ss_pred             ceEEEccCCCEEEEEeC
Q 031020           83 QMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaNs   99 (167)
                      ..+++|+||++|.++.+
T Consensus       106 ~~v~~s~d~~~l~~~~~  122 (311)
T d1nr0a1         106 KDISWDSESKRIAAVGE  122 (311)
T ss_dssp             EEEEECTTSCEEEEEEC
T ss_pred             ccccccccccccccccc
Confidence            78999999999998863

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.0094  Score=43.29  Aligned_cols=29  Identities=17%  Similarity=0.146  Sum_probs=20.3

Q ss_pred             eeEEEEecCCCEEEEEeCCCCcEEEEecc
Q 031020            5 ITDFLISLDDRFLYFSNWLHGDIRQYNIE   33 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSnw~hg~I~qyDIs   33 (167)
                      ...-.+|+|+++++.+....+....|...
T Consensus       173 ~~~~~~spdg~~~~~~~~~~~~~~i~~~~  201 (269)
T d2hqsa1         173 NQDADVSSDGKFMVMVSSNGGQQHIAKQD  201 (269)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred             ccccccccccceeEEEeecCCceeeeEee
Confidence            45567999999988877766655554443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.40  E-value=0.029  Score=43.07  Aligned_cols=62  Identities=6%  Similarity=0.087  Sum_probs=42.9

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -+..|.+|||+++|..+. ..+.|++||+..   ..........+                             ......
T Consensus        53 ~V~~l~fsp~~~~l~s~s-~D~~i~vWd~~~---~~~~~~~~~~~-----------------------------~~~~v~   99 (371)
T d1k8kc_          53 QVTGVDWAPDSNRIVTCG-TDRNAYVWTLKG---RTWKPTLVILR-----------------------------INRAAR   99 (371)
T ss_dssp             CEEEEEEETTTTEEEEEE-TTSCEEEEEEET---TEEEEEEECCC-----------------------------CSSCEE
T ss_pred             CEEEEEECCCCCEEEEEE-CCCeEEEEeecc---ccccccccccc-----------------------------cccccc
Confidence            478899999999997655 478999999874   22222222222                             112367


Q ss_pred             eEEEccCCCEEEEEe
Q 031020           84 MIQLSLDGKRLYVTN   98 (167)
Q Consensus        84 ~~~LS~DGkrLyVaN   98 (167)
                      -++++|||++|+++.
T Consensus       100 ~i~~~p~~~~l~~~s  114 (371)
T d1k8kc_         100 CVRWAPNEKKFAVGS  114 (371)
T ss_dssp             EEEECTTSSEEEEEE
T ss_pred             ccccccccccceeec
Confidence            788999999998876

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.37  E-value=0.016  Score=45.00  Aligned_cols=74  Identities=16%  Similarity=0.071  Sum_probs=44.7

Q ss_pred             ceeEEEEecCCCEEEEEeCCC--CcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCC
Q 031020            4 LITDFLISLDDRFLYFSNWLH--GDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGG   81 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~h--g~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~   81 (167)
                      -+..|.+|||+++|..++...  +.|+.||+..   .++...+......                .+......|.  .++
T Consensus       233 ~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~---g~~~~~l~~~~~~----------------~~~~~~~~gH--~~~  291 (393)
T d1sq9a_         233 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF---GERIGSLSVPTHS----------------SQASLGEFAH--SSW  291 (393)
T ss_dssp             CEEEEEECSSTTEEEEEEEETTEEEEEEEETTT---CCEEEEECBC------------------------CCBSB--SSC
T ss_pred             eEEEcccccccceeeeecCCCCcceeeeccccc---ceeeeeecccccc----------------ccceeeeecc--cCc
Confidence            478899999999998876533  3589999764   4444444321100                0111112232  344


Q ss_pred             CceEEEccCCCEEEEEe
Q 031020           82 PQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaN   98 (167)
                      -..+++||||++|+.+.
T Consensus       292 V~~l~fspd~~~l~S~s  308 (393)
T d1sq9a_         292 VMSLSFNDSGETLCSAG  308 (393)
T ss_dssp             EEEEEECSSSSEEEEEE
T ss_pred             eeeeccCCCCCeeEEEC
Confidence            57799999999887665

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.33  E-value=0.013  Score=43.82  Aligned_cols=72  Identities=7%  Similarity=0.064  Sum_probs=40.9

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      -+..|.+|+|+++|++++ ..+.|+.||+......... .....+..      ...               -....+...
T Consensus       256 ~v~~l~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~-~~~~~~~~------~~~---------------~~~~~~~v~  312 (388)
T d1erja_         256 SVYSVVFTRDGQSVVSGS-LDRSVKLWNLQNANNKSDS-KTPNSGTC------EVT---------------YIGHKDFVL  312 (388)
T ss_dssp             CEEEEEECTTSSEEEEEE-TTSEEEEEEC----------------CE------EEE---------------EECCSSCEE
T ss_pred             CEEEEEECCCCCEEEEEE-CCCcEEEEeccCCcccccc-ccccccce------eee---------------cccccceEE
Confidence            478899999999997766 4789999998763322111 11111100      000               001122357


Q ss_pred             eEEEccCCCEEEEEe
Q 031020           84 MIQLSLDGKRLYVTN   98 (167)
Q Consensus        84 ~~~LS~DGkrLyVaN   98 (167)
                      .+++|++|++|+++.
T Consensus       313 ~~~~s~~~~~l~sg~  327 (388)
T d1erja_         313 SVATTQNDEYILSGS  327 (388)
T ss_dssp             EEEECGGGCEEEEEE
T ss_pred             EEEECCCCCEEEEEe
Confidence            789999999999988

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.28  E-value=0.014  Score=42.00  Aligned_cols=70  Identities=19%  Similarity=0.096  Sum_probs=40.9

Q ss_pred             CCceeEEEEecCCCEEEEEeCCCC-----cEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCc
Q 031020            2 PGLITDFLISLDDRFLYFSNWLHG-----DIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGH   76 (167)
Q Consensus         2 p~l~tdI~IS~DdRfLYVSnw~hg-----~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~   76 (167)
                      |+......+|||||+|+.+.+..+     +|.+++...   .+.. ++...+.-..                        
T Consensus        40 ~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~---g~~~-~lt~~~~~~~------------------------   91 (281)
T d1k32a2          40 LGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN---GEIK-RITYFSGKST------------------------   91 (281)
T ss_dssp             SSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT---TEEE-ECCCCCEEEE------------------------
T ss_pred             CCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecC---CceE-EeeecCCCcc------------------------
Confidence            345677899999999877655333     366666443   2221 1211110000                        


Q ss_pred             cCCCCCceEEEccCCCEEEEEeC
Q 031020           77 RLRGGPQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        77 ~~~g~P~~~~LS~DGkrLyVaNs   99 (167)
                      ......+..++||||++|+.+..
T Consensus        92 ~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          92 GRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             TTEECSEEEEECTTCCEEEEECT
T ss_pred             CccccccccccCCCCCEEEEEEc
Confidence            01123678899999999999874

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.27  E-value=0.035  Score=42.93  Aligned_cols=65  Identities=11%  Similarity=0.078  Sum_probs=43.3

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+..+.+|+|+ +| +|+-..+.|+.||+..   .+.+........+                       .|  ....-+
T Consensus       186 ~~~~v~~s~dg-~l-asgs~Dg~i~iwd~~~---~~~~~~~~~~~~l-----------------------~~--h~~~V~  235 (393)
T d1sq9a_         186 FATSVDISERG-LI-ATGFNNGTVQISELST---LRPLYNFESQHSM-----------------------IN--NSNSIR  235 (393)
T ss_dssp             CCCEEEECTTS-EE-EEECTTSEEEEEETTT---TEEEEEEECCC--------------------------C--CCCCEE
T ss_pred             cEEEEEECCCC-EE-EEEeCCCcEEEEeecc---ccccccccccccc-----------------------cc--ccceEE
Confidence            45678999998 44 5777889999999874   4444333322111                       00  123367


Q ss_pred             eEEEccCCCEEEEEe
Q 031020           84 MIQLSLDGKRLYVTN   98 (167)
Q Consensus        84 ~~~LS~DGkrLyVaN   98 (167)
                      .+++||||++|+.+.
T Consensus       236 ~l~~spdg~~l~sgs  250 (393)
T d1sq9a_         236 SVKFSPQGSLLAIAH  250 (393)
T ss_dssp             EEEECSSTTEEEEEE
T ss_pred             Ecccccccceeeeec
Confidence            899999999999885

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.23  E-value=0.0083  Score=48.87  Aligned_cols=44  Identities=16%  Similarity=0.253  Sum_probs=31.7

Q ss_pred             CceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCeeecCceeEeccC
Q 031020           82 PQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGMAINPNFFVDFEA  143 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l~l~~~F~vDf~~  143 (167)
                      |+-+++|+|+++||||.+               .+..+.+++++. ++.++.  ...+++..
T Consensus       208 pNGI~~s~d~~~lyVa~t---------------~~~~i~~y~~~~-~~~l~~--~~~~~l~~  251 (340)
T d1v04a_         208 ANGINISPDGKYVYIAEL---------------LAHKIHVYEKHA-NWTLTP--LRVLSFDT  251 (340)
T ss_dssp             EEEEEECTTSSEEEEEEG---------------GGTEEEEEEECT-TSCEEE--EEEEECSS
T ss_pred             cceeEECCCCCEEEEEeC---------------CCCeEEEEEeCC-Ccccce--EEEecCCC
Confidence            999999999999999994               466788888874 454443  33345533

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.16  E-value=0.0053  Score=44.84  Aligned_cols=30  Identities=27%  Similarity=0.366  Sum_probs=25.2

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      .++.|++|||+++|+.+ -.++.|+.||+..
T Consensus        14 ~V~~l~~s~dg~~l~s~-s~Dg~v~vWd~~~   43 (299)
T d1nr0a2          14 AITALSSSADGKTLFSA-DAEGHINSWDIST   43 (299)
T ss_dssp             CEEEEEECTTSSEEEEE-ETTSCEEEEETTT
T ss_pred             CcEEEEECCCCCEEEEE-cCCCeEEEEECCC
Confidence            57899999999999654 4578999999875

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.10  E-value=0.015  Score=40.85  Aligned_cols=61  Identities=5%  Similarity=0.058  Sum_probs=43.8

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGP   82 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P   82 (167)
                      ..+..+.+|+|+++|+.+. ..|.|+.||+.+   .+++..+..-                               .+.-
T Consensus       248 ~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~---~~~~~~~~~h-------------------------------~~~V  292 (317)
T d1vyhc1         248 NWVRGVLFHSGGKFILSCA-DDKTLRVWDYKN---KRCMKTLNAH-------------------------------EHFV  292 (317)
T ss_dssp             SCEEEEEECSSSSCEEEEE-TTTEEEEECCTT---SCCCEEEECC-------------------------------SSCE
T ss_pred             CCEEEEEECCCCCEEEEEE-CCCeEEEEECCC---CcEEEEEcCC-------------------------------CCCE
Confidence            3578899999999997766 578999999875   3444333210                               1124


Q ss_pred             ceEEEccCCCEEEEEe
Q 031020           83 QMIQLSLDGKRLYVTN   98 (167)
Q Consensus        83 ~~~~LS~DGkrLyVaN   98 (167)
                      ..+++|+||++|+.+.
T Consensus       293 ~~~~~s~~~~~l~s~s  308 (317)
T d1vyhc1         293 TSLDFHKTAPYVVTGS  308 (317)
T ss_dssp             EEEEECSSSSCEEEEE
T ss_pred             EEEEEcCCCCEEEEEe
Confidence            6688999999998876

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.07  E-value=0.019  Score=41.74  Aligned_cols=19  Identities=21%  Similarity=0.219  Sum_probs=15.8

Q ss_pred             CCceEEEccCCCEEEEEeC
Q 031020           81 GPQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        81 ~P~~~~LS~DGkrLyVaNs   99 (167)
                      ....++++++|++|+++.+
T Consensus       181 ~i~~~~~~~~~~~l~~~~~  199 (299)
T d1nr0a2         181 EITSVAFSNNGAFLVATDQ  199 (299)
T ss_dssp             CEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccccccccccc
Confidence            3678899999999998864

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.01  E-value=0.012  Score=41.41  Aligned_cols=31  Identities=10%  Similarity=0.117  Sum_probs=25.5

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      +-|+.|.+|||+++|..+. ..+.|+.||+..
T Consensus        18 ~~I~~l~~sp~~~~l~s~s-~Dg~i~iWd~~~   48 (317)
T d1vyhc1          18 SPVTRVIFHPVFSVMVSAS-EDATIKVWDYET   48 (317)
T ss_dssp             SCEEEEEECSSSSEEEEEE-SSSCEEEEETTT
T ss_pred             CCeEEEEEcCCCCEEEEEe-CCCeEEEEECCC
Confidence            3588999999999986544 579999999874

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.94  E-value=0.024  Score=43.21  Aligned_cols=61  Identities=8%  Similarity=-0.028  Sum_probs=45.3

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCc
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQ   83 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~   83 (167)
                      .+..|.+|||++++.+|+..++.|+.||+..   .+....+..                               ....-.
T Consensus       148 ~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~---~~~~~~~~~-------------------------------~~~~i~  193 (311)
T d1nr0a1         148 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPP---FKFKSTFGE-------------------------------HTKFVH  193 (311)
T ss_dssp             CEEEEEECSSSSCEEEEEETTSCEEEEETTT---BEEEEEECC-------------------------------CSSCEE
T ss_pred             ccccccccccceeeecccccccccccccccc---ccccccccc-------------------------------cccccc
Confidence            4688999999999999998899999999774   333322211                               011257


Q ss_pred             eEEEccCCCEEEEEe
Q 031020           84 MIQLSLDGKRLYVTN   98 (167)
Q Consensus        84 ~~~LS~DGkrLyVaN   98 (167)
                      .+.++|||++|+++.
T Consensus       194 ~v~~~p~~~~l~~~~  208 (311)
T d1nr0a1         194 SVRYNPDGSLFASTG  208 (311)
T ss_dssp             EEEECTTSSEEEEEE
T ss_pred             ccccCcccccccccc
Confidence            889999999998876

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.53  E-value=0.097  Score=37.64  Aligned_cols=20  Identities=15%  Similarity=0.213  Sum_probs=16.9

Q ss_pred             CCCceEEEccCCCEEEEEeC
Q 031020           80 GGPQMIQLSLDGKRLYVTNS   99 (167)
Q Consensus        80 g~P~~~~LS~DGkrLyVaNs   99 (167)
                      +....+++|+||++|+++++
T Consensus       163 ~~v~~~~~s~~~~~l~~g~~  182 (287)
T d1pgua2         163 AKPSYISISPSETYIAAGDV  182 (287)
T ss_dssp             SCEEEEEECTTSSEEEEEET
T ss_pred             CceeEEEeccCccccccccc
Confidence            44788999999999999873

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.37  E-value=0.018  Score=45.73  Aligned_cols=31  Identities=29%  Similarity=0.658  Sum_probs=22.1

Q ss_pred             ceeEEEEecCCCEEEEEe-----CCC---CcEEEEeccC
Q 031020            4 LITDFLISLDDRFLYFSN-----WLH---GDIRQYNIED   34 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSn-----w~h---g~I~qyDIsd   34 (167)
                      -+.++.+|||+|+|.++.     |.|   +++.+||+..
T Consensus        63 ~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~  101 (470)
T d2bgra1          63 SINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK  101 (470)
T ss_dssp             CCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred             ccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCC
Confidence            367889999999976542     333   5777788764

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.09  E-value=0.088  Score=39.69  Aligned_cols=31  Identities=10%  Similarity=-0.007  Sum_probs=26.4

Q ss_pred             ceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            4 LITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         4 l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      -++.|.++++++++.+++-.++.|+.||+..
T Consensus       161 ~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  191 (325)
T d1pgua1         161 RINACHLKQSRPMRSMTVGDDGSVVFYQGPP  191 (325)
T ss_dssp             CEEEEEECSSSSCEEEEEETTTEEEEEETTT
T ss_pred             ccccccccccccceEEEeecccccccccccc
Confidence            4678999999999888888899999999753

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.17  E-value=0.16  Score=38.16  Aligned_cols=32  Identities=13%  Similarity=0.100  Sum_probs=25.8

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      ..++.+.+|||+..+.+++-.++.|+.||+..
T Consensus       206 ~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~  237 (325)
T d1pgua1         206 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKS  237 (325)
T ss_dssp             CCEEEEEECSTTCCEEEEEETTCCEEEEETTT
T ss_pred             CccEEeeeccccceeccccccccceeeeeecc
Confidence            35788999999766667777889999999764

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.14  E-value=0.017  Score=48.19  Aligned_cols=30  Identities=27%  Similarity=0.355  Sum_probs=22.3

Q ss_pred             eeEEEEecCCCEEEEEe-----CCC---CcEEEEeccC
Q 031020            5 ITDFLISLDDRFLYFSN-----WLH---GDIRQYNIED   34 (167)
Q Consensus         5 ~tdI~IS~DdRfLYVSn-----w~h---g~I~qyDIsd   34 (167)
                      +++..+|||+|+|+++.     |.|   +.+..|||..
T Consensus        63 ~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             cceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            35678999999987763     433   6788888874

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.92  E-value=0.28  Score=33.73  Aligned_cols=32  Identities=9%  Similarity=0.088  Sum_probs=23.2

Q ss_pred             EEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEE
Q 031020            9 LISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQI   44 (167)
Q Consensus         9 ~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v   44 (167)
                      .+|+|+++|..++ ..|.|++||+..   .+++..+
T Consensus        20 c~~~d~~~l~sgs-~Dg~i~vWd~~~---~~~~~~l   51 (293)
T d1p22a2          20 CLQYDDQKIVSGL-RDNTIKIWDKNT---LECKRIL   51 (293)
T ss_dssp             EEECCSSEEEEEE-SSSCEEEEESSS---CCEEEEE
T ss_pred             EEEEcCCEEEEEe-CCCeEEEEECCC---CcEEEEE
Confidence            4789999986555 579999999864   4444433

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.59  E-value=0.29  Score=34.43  Aligned_cols=61  Identities=13%  Similarity=0.081  Sum_probs=39.0

Q ss_pred             EEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEE
Q 031020            8 FLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQL   87 (167)
Q Consensus         8 I~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~L   87 (167)
                      ..++.++++|..+. ..|.|+.||+..   .+++.++.....-                        |  ..+.-..+++
T Consensus       264 ~~~~~~~~~~~s~s-~Dg~i~iwd~~t---g~~i~~~~~~~~~------------------------~--~~~~v~~v~~  313 (342)
T d2ovrb2         264 TCLQFNKNFVITSS-DDGTVKLWDLKT---GEFIRNLVTLESG------------------------G--SGGVVWRIRA  313 (342)
T ss_dssp             EEEEECSSEEEEEE-TTSEEEEEETTT---CCEEEEEEECTTG------------------------G--GTCEEEEEEE
T ss_pred             eecccCCCeeEEEc-CCCEEEEEECCC---CCEEEEEecccCC------------------------C--CCCCEEEEEE
Confidence            45677777776555 579999999864   5566555432100                        0  0112456889


Q ss_pred             ccCCCEEEEEe
Q 031020           88 SLDGKRLYVTN   98 (167)
Q Consensus        88 S~DGkrLyVaN   98 (167)
                      |+||+.|.++.
T Consensus       314 s~~~~~la~g~  324 (342)
T d2ovrb2         314 SNTKLVCAVGS  324 (342)
T ss_dssp             CSSEEEEEEEC
T ss_pred             CCCCCEEEEEe
Confidence            99998777776

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.99  E-value=0.047  Score=43.25  Aligned_cols=60  Identities=17%  Similarity=0.201  Sum_probs=36.4

Q ss_pred             EEEEecCCCEEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEE
Q 031020            7 DFLISLDDRFLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQ   86 (167)
Q Consensus         7 dI~IS~DdRfLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~   86 (167)
                      .+.-++|++|+|..   .|.|..||+..   .+.. .+..+-.+                         +....+-...+
T Consensus        21 ~~~W~~d~~~~~~~---~~~~~~~~~~t---~~~~-~~~~~~~~-------------------------~~~~~~i~~~~   68 (470)
T d2bgra1          21 SLRWISDHEYLYKQ---ENNILVFNAEY---GNSS-VFLENSTF-------------------------DEFGHSINDYS   68 (470)
T ss_dssp             CCEECSSSEEEEES---SSCEEEEETTT---CCEE-EEECTTTT-------------------------TTSSSCCCEEE
T ss_pred             CCEeCCCCEEEEEc---CCcEEEEECCC---CCEE-EEEchhhh-------------------------hhccCccceeE
Confidence            34557899999843   58899999774   3322 11111110                         01122357889


Q ss_pred             EccCCCEEEEEe
Q 031020           87 LSLDGKRLYVTN   98 (167)
Q Consensus        87 LS~DGkrLyVaN   98 (167)
                      +||||++|..+.
T Consensus        69 ~SpDg~~i~~~~   80 (470)
T d2bgra1          69 ISPDGQFILLEY   80 (470)
T ss_dssp             ECTTSSEEEEEE
T ss_pred             ECCCCCEEEEEE
Confidence            999999987654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.48  E-value=0.34  Score=34.59  Aligned_cols=17  Identities=24%  Similarity=0.200  Sum_probs=13.1

Q ss_pred             CceEEEccCCCEEEEEe
Q 031020           82 PQMIQLSLDGKRLYVTN   98 (167)
Q Consensus        82 P~~~~LS~DGkrLyVaN   98 (167)
                      ......||||++|+...
T Consensus        85 ~~~~~~spdg~~i~~~~  101 (269)
T d2hqsa1          85 NGAPAFSPDGSKLAFAL  101 (269)
T ss_dssp             EEEEEECTTSSEEEEEE
T ss_pred             cccceecCCCCeeeEee
Confidence            66778899999887643

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.93  E-value=0.41  Score=39.62  Aligned_cols=55  Identities=18%  Similarity=0.176  Sum_probs=39.8

Q ss_pred             EEEEEeCCCCcEEEEeccCCCCCeEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCCCCCceEEEccCCCEEE
Q 031020           16 FLYFSNWLHGDIRQYNIEDPKNPVLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLRGGPQMIQLSLDGKRLY   95 (167)
Q Consensus        16 fLYVSnw~hg~I~qyDIsdp~~pklvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~g~P~~~~LS~DGkrLy   95 (167)
                      -|+|+.|..+.|.++.+++.........+.....                         +.+    |++++..|||..||
T Consensus       370 ~lfvg~l~~~~i~~v~~~~~~~~~~~~~~~~~~~-------------------------~~R----~rdv~~gpDGs~ly  420 (450)
T d1crua_         370 TLLVPSLKRGVIFRIKLDPTYSTTYDDAVPMFKS-------------------------NNR----YRDVIASPDGNVLY  420 (450)
T ss_dssp             EEEEEBSSSCCEEEEEECTTSSSEEEEEEEESCC-------------------------SSC----EEEEEECTTSSCEE
T ss_pred             CEEEEECcCCEEEEEEEcCCCceeeEEEEeccCC-------------------------CCC----ceEEEECCCCCEEE
Confidence            4678999999999999986544444444433221                         113    99999999999999


Q ss_pred             EEeC
Q 031020           96 VTNS   99 (167)
Q Consensus        96 VaNs   99 (167)
                      |+..
T Consensus       421 v~~d  424 (450)
T d1crua_         421 VLTD  424 (450)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9883

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.69  E-value=0.19  Score=36.04  Aligned_cols=31  Identities=16%  Similarity=0.314  Sum_probs=26.5

Q ss_pred             CceeEEEEecCCCEEEEEeCCCCcEEEEeccC
Q 031020            3 GLITDFLISLDDRFLYFSNWLHGDIRQYNIED   34 (167)
Q Consensus         3 ~l~tdI~IS~DdRfLYVSnw~hg~I~qyDIsd   34 (167)
                      +-++.|.+|||+++|.+++ ..|.|+.||+.+
T Consensus       163 ~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~  193 (287)
T d1pgua2         163 AKPSYISISPSETYIAAGD-VMGKILLYDLQS  193 (287)
T ss_dssp             SCEEEEEECTTSSEEEEEE-TTSCEEEEETTT
T ss_pred             CceeEEEeccCcccccccc-ccccccceeecc
Confidence            3478999999999998887 578999999875

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.60  E-value=1.2  Score=31.10  Aligned_cols=29  Identities=14%  Similarity=0.279  Sum_probs=19.8

Q ss_pred             eEEEEecCCCEEEEEeCCCCcEEEEeccCC
Q 031020            6 TDFLISLDDRFLYFSNWLHGDIRQYNIEDP   35 (167)
Q Consensus         6 tdI~IS~DdRfLYVSnw~hg~I~qyDIsdp   35 (167)
                      ..+.++.|+++|..++. .+.|+.||+...
T Consensus       179 ~~~~~~~~~~~l~s~~~-dg~i~~~d~~~~  207 (342)
T d2ovrb2         179 RVYSLQFDGIHVVSGSL-DTSIRVWDVETG  207 (342)
T ss_dssp             CEEEEEECSSEEEEEET-TSCEEEEETTTC
T ss_pred             ccccccCCCCEEEEEeC-CCeEEEeecccc
Confidence            34566777788877774 567777776653

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=82.99  E-value=1.5  Score=35.96  Aligned_cols=77  Identities=13%  Similarity=0.239  Sum_probs=51.5

Q ss_pred             EEEE--ecCCC-EEEEEeCCCCcEEEEeccCCCCC----eEEEEEEeCceeecCCceeEeeCCCCCCCCCCccccCccCC
Q 031020            7 DFLI--SLDDR-FLYFSNWLHGDIRQYNIEDPKNP----VLTGQIWVGGLFRKGSPVVAVTDDGQPYQSDVPEVQGHRLR   79 (167)
Q Consensus         7 dI~I--S~DdR-fLYVSnw~hg~I~qyDIsdp~~p----klvg~v~~GG~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~   79 (167)
                      .|.+  ++++. ...+.++..|.+.||.+....+.    +++.+..++.                            .  
T Consensus       132 Glc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~----------------------------q--  181 (353)
T d1h6la_         132 GFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNS----------------------------Q--  181 (353)
T ss_dssp             CEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSS----------------------------C--
T ss_pred             EEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCC----------------------------c--
Confidence            4455  66544 43466778899999999765544    4455555443                            2  


Q ss_pred             CCCceEEEccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe
Q 031020           80 GGPQMIQLSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM  131 (167)
Q Consensus        80 g~P~~~~LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l  131 (167)
                        ++-+....+.++||++=+                +.-+.+++.|++++..
T Consensus       182 --~EGCVvDde~~~LyisEE----------------~~Giw~~~a~~~~~~~  215 (353)
T d1h6la_         182 --TEGMAADDEYGSLYIAEE----------------DEAIWKFSAEPDGGSN  215 (353)
T ss_dssp             --EEEEEEETTTTEEEEEET----------------TTEEEEEESSTTSCSC
T ss_pred             --cceEEEeCCCCcEEEecC----------------ccceEEEEeccCCCcc
Confidence              788999999999999873                3345667776665543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.73  E-value=1.2  Score=31.35  Aligned_cols=22  Identities=18%  Similarity=0.375  Sum_probs=10.9

Q ss_pred             EecCCCEEEEEeCCCCcEEEEecc
Q 031020           10 ISLDDRFLYFSNWLHGDIRQYNIE   33 (167)
Q Consensus        10 IS~DdRfLYVSnw~hg~I~qyDIs   33 (167)
                      +++++++|..+.  .|.|++||+.
T Consensus       290 ~~~~~~~l~~g~--d~~i~vwd~~  311 (355)
T d1nexb2         290 FYVSDNILVSGS--ENQFNIYNLR  311 (355)
T ss_dssp             EEECSSEEEEEE--TTEEEEEETT
T ss_pred             EcCCCCEEEEEe--CCEEEEEECC
Confidence            445555443332  4556666654

>d1s6la2 d.357.1.2 (A:81-212) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: NosL/MerB-like
superfamily: NosL/MerB-like
family: MerB-like
domain: Alkylmercury lyase MerB
species: Escherichia coli [TaxId: 562]

Probab=82.14  E-value=0.89  Score=32.96  Aligned_cols=70  Identities=21%  Similarity=0.344  Sum_probs=51.7

Q ss_pred             EccCCCEEEEEeCCCccccccccccccccCcEEEEEEeeCCCCCe---eecCceeEeccCCCCCCcceeeeecCCCCcCc
Q 031020           87 LSLDGKRLYVTNSLFSAWDCQFYPELKEKGSHMLQIDVNSEKGGM---AINPNFFVDFEAEPDGPALAHEMRYPGGDCTS  163 (167)
Q Consensus        87 LS~DGkrLyVaNsl~s~wD~Qfyp~~~~~g~~~~~~dvD~~~G~l---~l~~~F~vDf~~~p~gp~~~he~r~pggdcts  163 (167)
                      +.-|||+||.-.    +||.-.+|.|+.+.  +...-.++.+|.-   +++++-.++.  +|.+.++.+=.+...+|+.+
T Consensus         5 f~vdGr~lya~C----AiDALg~pa~lg~~--a~I~S~c~~tg~pI~ltv~~~~v~~~--~P~~~vVs~v~~~~~~~~~~   76 (132)
T d1s6la2           5 FEIDDRRLYAWC----ALDTLIFPALIGRT--ARVSSHCAATGAPVSLTVSPSEIQAV--EPAGMAVSLVLPQEAADVRQ   76 (132)
T ss_dssp             EEETTEEEEESS----TTTTCSCHHHHTSC--EEEEEECTTTCCEEEEEECSSSEEEE--ESTTCEEEECCCCSSSCSSC
T ss_pred             EEECCEEEEeeh----HHHHhhhHHHhCCc--eEEEeeCCCCCCeEEEEEeCCceeec--CCCceEEEEeccccCCCccc
Confidence            556999999876    69999999999444  4445566688864   7888888875  68887777766666776654


Q ss_pred             c
Q 031020          164 D  164 (167)
Q Consensus       164 d  164 (167)
                      .
T Consensus        77 s   77 (132)
T d1s6la2          77 S   77 (132)
T ss_dssp             S
T ss_pred             c
Confidence            3