Citrus Sinensis ID: 031034

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
Protein Sequence
MKESGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQTASLSSHGFGPASPSNSGSPSSKLVASQTKPIYDMDLAHYEESMWTC
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHccccHHHHHHccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHcccccEEccccccccHHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mkesgrkqgapspcaACKLLRRRCAqdcvfapyfpadepqkfanvhKVFGASNVNKMLQelpvhqrgdaVSSMVYEanarvrdpvyGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQtaslsshgfgpaspsnsgspssklvasqtkpiydmdLAHYEESMWTC
Flexible Loop (DISEMBL)
mkesgrkqgapspcAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQTASLSSHgfgpaspsnsgspssKLVASQTKPIYDMDLAHYEESMWTC
Low Complexity Region (SEG)
MKESGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQTASLSSHgfgpaspsnsgspssKLVASQTKPIYDMDLAHYEESMWTC
Disordered region (IsUnstruct)
*************CAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVR************************************************
Disordered Region (DISOPRED)
***************ACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVH****************************************DLAHY**SMWTC
Disordered Region (DISEMBL)
************PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQTA************************SQTKPIYDMDLAHYEESMWTC
Disordered Region (DISPRO)
**********PSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQTASL**************************PIYDMDLAHYEESMWTC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKESGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAxxxxxxxxxxxxxxxxxxxxxVVHLRVRQTASLSSHGFGPASPSNSGSPSSKLVASQTKPIYDMDLAHYEESMWTC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	167	2.2.26 [Sep-21-2011]
Q9SHE9	172	LOB domain-containing pro	yes	no	1.0	0.970	0.790	7e-61
Q8LBW3	193	LOB domain-containing pro	no	no	0.712	0.616	0.727	2e-47
Q9SA51	165	LOB domain-containing pro	no	no	0.958	0.969	0.546	2e-45
Q9FML4	186	Protein LATERAL ORGAN BOU	no	no	0.670	0.602	0.642	5e-38
Q9LQR0	190	LOB domain-containing pro	no	no	0.676	0.594	0.637	2e-37
Q9SK08	232	LOB domain-containing pro	no	no	0.676	0.487	0.628	3e-37
Q9AT61	268	LOB domain-containing pro	no	no	0.730	0.455	0.557	5e-37
Q8L8Q3	159	LOB domain-containing pro	no	no	0.616	0.647	0.650	4e-36
Q32SG3	260	LOB domain-containing pro	N/A	no	0.628	0.403	0.647	9e-35
Q9FKZ3	313	LOB domain-containing pro	no	no	0.610	0.325	0.656	1e-34

>sp|Q9SHE9|LBD4_ARATH LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1

 Score =  232 bits (592), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 136/172 (79%), Positives = 147/172 (85%), Gaps = 5/172 (2%)

Query: 1   MKESGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQE 60
           MKES RKQGA SPCAACKLLRRRCAQDCVF+PYFPADEPQKFANVH+VFGASNVNKMLQE
Sbjct: 1   MKESSRKQGAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQE 60

Query: 61  LPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQ 120
           LP+HQRGDAVSSMVYEANARVRDPVYGCVGAISSLQ QIDVLQ QLALAQAEVVHLRVRQ
Sbjct: 61  LPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQ 120

Query: 121 TASLSSHGFGPASPSNSGSPSSKLVASQ-TKPIYD----MDLAHYEESMWTC 167
           + +   HG  P SPS+SGSPSSK V+ Q  K ++     +D A   ESMW+C
Sbjct: 121 STNFPGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWSC 172

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBW3|LBD12_ARATH LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2

 Score =  187 bits (476), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/121 (72%), Positives = 105/121 (86%), Gaps = 2/121 (1%)

Query: 9   GAP--SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQR 66
           G P  SPCA+CKLLRRRCA+DC+FAPYFP D+P KFA VHKVFGASNV+KMLQELPVHQR
Sbjct: 2   GGPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQR 61

Query: 67  GDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQTASLSS 126
            DAV+S+V+EANARVRDPVYGCVGAIS LQNQ+  LQ QLA+AQAE++ ++++   +L S
Sbjct: 62  ADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQS 121

Query: 127 H 127
           H
Sbjct: 122 H 122

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SA51|LBD3_ARATH LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1

 Score =  181 bits (459), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 94/172 (54%), Positives = 117/172 (68%), Gaps = 12/172 (6%)

Query: 1   MKESGRKQG-APSPCAACKLLRRRCAQD-CVFAPYFPADEPQKFANVHKVFGASNVNKML 58
           M++ G + G   SPCA CKLLRR+C +D CVFAPYFPA EP KFA VHK+FGASNVNKML
Sbjct: 1   MRQKGHRHGRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKML 60

Query: 59  QELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRV 118
           QEL  + R DAV SMVYEANAR++DPVYGCVG ISSL  Q++ LQTQLA AQAE++H+R 
Sbjct: 61  QELSENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRT 120

Query: 119 RQTASLSSHGFGPASPSNSGSPSSKLVASQTKPIYDMDLAHYEES---MWTC 167
                       P + S    PS+K   S      DM +A+ +++   +W+C
Sbjct: 121 LHRIHTKP---PPYTASTVTFPSNKDFYSDI----DMAVAYTDDAGDFLWSC 165

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FML4|LOB_ARATH Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1

 Score =  156 bits (395), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 72/112 (64%), Positives = 86/112 (76%)

Query: 12  SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVS 71
           SPCAACK LRR+C   C+FAPYFP +EP KFANVHK+FGASNV K+L EL  HQR DAV+
Sbjct: 10  SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query: 72  SMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQTAS 123
           S+ YEA ARVRDPVYGCVGAIS LQ Q+  LQ +L  A A++ H  +  +A+
Sbjct: 70  SLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAA 121

Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQR0|LBD1_ARATH LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1

 Score =  154 bits (390), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 72/113 (63%), Positives = 87/113 (76%)

Query: 12  SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVS 71
           SPCAACK+LRRRCA+ CV APYFP  +P KF   H+VFGASN+ K LQELP  QR DAV+
Sbjct: 32  SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query: 72  SMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQTASL 124
           SMVYEA AR+RDPVYGC GAI  LQ Q+  LQ QLA AQ E+V+++ +++  L
Sbjct: 92  SMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSNLL 144

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK08|LBD11_ARATH LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2

 Score =  154 bits (388), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 71/113 (62%), Positives = 86/113 (76%)

Query: 12  SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVS 71
           SPCAACK+LRRRCA  CV APYFP  +P KF   H+VFGASN+ K LQELP  QR DAV+
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 72  SMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQTASL 124
           SMVYEA AR+RDPVYGC GAI  LQ Q+  LQ QLA  Q E+V +++++++ L
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLL 166

Arabidopsis thaliana (taxid: 3702)

>sp|Q9AT61|LBD13_ARATH LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2

 Score =  153 bits (386), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 68/122 (55%), Positives = 92/122 (75%)

Query: 5   GRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVH 64
           G      +PCAACKLLRRRCA++C F+PYF   EP KFA VHKVFGASNV+KML E+   
Sbjct: 44  GTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGES 103

Query: 65  QRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQTASL 124
           QRGDA +S+VYEAN R+RDP+YGC+GAIS+LQ+ I  LQ++L   + E++  + ++  ++
Sbjct: 104 QRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQEATTI 163

Query: 125 SS 126
           +S
Sbjct: 164 TS 165

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L8Q3|LBD25_ARATH LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3

 Score =  150 bits (378), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 67/103 (65%), Positives = 83/103 (80%)

Query: 12  SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVS 71
           SPCAACK LRR+C  DCVFAPYFP +EP KFANVH++FGASNV+K+L E+  HQR DAV+
Sbjct: 38  SPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAVN 97

Query: 72  SMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVV 114
           S+ YEA AR++DPVYGCVGAIS LQ Q+  LQ +L    A+++
Sbjct: 98  SLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLM 140

Arabidopsis thaliana (taxid: 3702)

>sp|Q32SG3|LBD6_MAIZE LOB domain-containing protein 6 OS=Zea mays GN=LBD6 PE=1 SV=1

 Score =  145 bits (367), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 68/105 (64%), Positives = 80/105 (76%)

Query: 9   GAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGD 68
           G  SPCAACK LRR+C  DCVFAPYFP D PQKF +VH+VFGASNV K+L EL   QR D
Sbjct: 29  GTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQRED 88

Query: 69  AVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEV 113
           AV+S+ YEA+ R+RDPVYGCVG IS LQ+ +  LQ  LA A+ E+
Sbjct: 89  AVNSLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYEL 133

Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes.

Zea mays (taxid: 4577)

>sp|Q9FKZ3|LBD36_ARATH LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1

 Score =  145 bits (366), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 81/102 (79%)

Query: 12  SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVS 71
           SPCAACK LRR+C Q+CVFAPYFP D+PQKFA VHKVFGASNV K+L EL  +QR DAV+
Sbjct: 6   SPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAVN 65

Query: 72  SMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEV 113
           S+ YEA AR+RDPVYGCVG IS LQ+++  +   L  A+ E+
Sbjct: 66  SLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKEL 107

Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
224075266	170	predicted protein [Populus trichocarpa]	1.0	0.982	0.864	1e-74
224053699	170	predicted protein [Populus trichocarpa]	1.0	0.982	0.864	2e-74
356532995	170	PREDICTED: LOB domain-containing protein	0.994	0.976	0.8	3e-72
356558043	170	PREDICTED: LOB domain-containing protein	0.994	0.976	0.794	4e-72
356521600	159	PREDICTED: LOB domain-containing protein	0.928	0.974	0.804	2e-71
351722989	159	uncharacterized protein LOC100306560 [Gl	0.928	0.974	0.798	8e-71
357475151	174	LOB domain-containing protein [Medicago	0.988	0.948	0.793	6e-70
225465115	175	PREDICTED: LOB domain-containing protein	0.988	0.942	0.784	4e-69
449455443	170	PREDICTED: LOB domain-containing protein	0.976	0.958	0.784	6e-65
356525770	177	PREDICTED: LOB domain-containing protein	0.994	0.937	0.715	3e-63

>gi|224075266|ref|XP_002304584.1| predicted protein [Populus trichocarpa] gi|222842016|gb|EEE79563.1| predicted protein [Populus trichocarpa]

 Score =  284 bits (726), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 147/170 (86%), Positives = 156/170 (91%), Gaps = 3/170 (1%)

Query: 1   MKESGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQE 60
           MKE  RKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQE
Sbjct: 1   MKEGSRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQE 60

Query: 61  LPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQ 120
           LPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQ QIDVLQTQLALAQAEVVHLRVRQ
Sbjct: 61  LPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAEVVHLRVRQ 120

Query: 121 TASLSSHGFGPASPSNSGSPSSKLVASQTKPIYDMDLAHYE---ESMWTC 167
           TA+LS+HG  PASP NSGSPSS+L+ SQ KPI+DM++  +    ESMW+C
Sbjct: 121 TATLSNHGPPPASPGNSGSPSSRLMGSQMKPIFDMEMVDHTSLGESMWSC 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053699|ref|XP_002297935.1| predicted protein [Populus trichocarpa] gi|222845193|gb|EEE82740.1| predicted protein [Populus trichocarpa]

 Score =  283 bits (723), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/170 (86%), Positives = 157/170 (92%), Gaps = 3/170 (1%)

Query: 1   MKESGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQE 60
           MKE GRKQGAP+PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQE
Sbjct: 1   MKEGGRKQGAPAPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQE 60

Query: 61  LPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQ 120
           LPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQ QID LQTQLALAQAEVVHLRVRQ
Sbjct: 61  LPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVRQ 120

Query: 121 TASLSSHGFGPASPSNSGSPSSKLVASQTKPIYDMDLAHYE---ESMWTC 167
           TA+LS+HG  PASPSNSGSPSS+L+ SQ KP++DMD+  +    ESMW+C
Sbjct: 121 TATLSNHGLSPASPSNSGSPSSRLMGSQMKPMFDMDMVDHTSLGESMWSC 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532995|ref|XP_003535054.1| PREDICTED: LOB domain-containing protein 4-like [Glycine max]

 Score =  276 bits (705), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 136/170 (80%), Positives = 146/170 (85%), Gaps = 4/170 (2%)

Query: 1   MKESG-RKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQ 59
           MKE G RKQGA SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQ
Sbjct: 1   MKEGGGRKQGAASPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQ 60

Query: 60  ELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVR 119
           +LP+HQRGDAVSSMVYEANARVRDPVYGCVGAISSLQ QIDVLQTQLA AQAEV HLRVR
Sbjct: 61  DLPMHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLARAQAEVAHLRVR 120

Query: 120 QTASLSSHGFGPASPSNSGSPSSKLVASQTKPIYDMDL---AHYEESMWT 166
           Q    S+HG  P SP++SG PSSK + S  KPI+D+D+   A Y  SMW+
Sbjct: 121 QNRCFSNHGLRPTSPTHSGFPSSKTLDSHAKPIFDIDMVDQASYGGSMWS 170

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558043|ref|XP_003547318.1| PREDICTED: LOB domain-containing protein 4-like [Glycine max]

 Score =  275 bits (704), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 135/170 (79%), Positives = 143/170 (84%), Gaps = 4/170 (2%)

Query: 1   MKESG-RKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQ 59
           MKE G RKQGA SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQ
Sbjct: 1   MKEGGGRKQGAASPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQ 60

Query: 60  ELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVR 119
           +LP+HQRGDAVSSMVYEANARVRDPVYGCVGAISSLQ QIDVLQTQLALAQAEV HLR R
Sbjct: 61  DLPMHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAEVAHLRAR 120

Query: 120 QTASLSSHGFGPASPSNSGSPSSKLVASQTKPIYDMDL---AHYEESMWT 166
           Q    S HG  P SP+ SG PSSK + S  KPI+D+D+     Y  SMW+
Sbjct: 121 QNRCFSHHGLRPTSPTTSGFPSSKTLDSHAKPIFDIDMVDQVRYGASMWS 170

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521600|ref|XP_003529442.1| PREDICTED: LOB domain-containing protein 4-like [Glycine max]

 Score =  273 bits (697), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 136/169 (80%), Positives = 144/169 (85%), Gaps = 14/169 (8%)

Query: 1   MKESGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQE 60
           MK+ GRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQ+
Sbjct: 1   MKDGGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQD 60

Query: 61  LPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQ 120
           L  HQRGDAVSSMVYEANARVRDPVYGCVGAISSLQ QIDVLQTQLA+AQAE VHLRVRQ
Sbjct: 61  LAEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQ 120

Query: 121 TASLSSHGFGPASPSNSGSPSSKLVASQTKPIYDMDLA----HYEESMW 165
           TASL    + P SP+NSGSP      SQ KPI+DMD+      Y +SMW
Sbjct: 121 TASL----YSPTSPTNSGSP------SQAKPIFDMDMVVDQNSYGDSMW 159

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722989|ref|NP_001236751.1| uncharacterized protein LOC100306560 [Glycine max] gi|255628883|gb|ACU14786.1| unknown [Glycine max]

 Score =  271 bits (692), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 135/169 (79%), Positives = 144/169 (85%), Gaps = 14/169 (8%)

Query: 1   MKESGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQE 60
           MK+ GRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQ+
Sbjct: 1   MKDGGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQD 60

Query: 61  LPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQ 120
           LP HQRGDAVSSMVYEANARVRDPVYGCVGAISSLQ QIDVLQTQLA+AQAE VHLRVRQ
Sbjct: 61  LPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQ 120

Query: 121 TASLSSHGFGPASPSNSGSPSSKLVASQTKPIYDMDL----AHYEESMW 165
            ASL    + P SP+NSGSP      SQ KPI+DMD+      Y +S+W
Sbjct: 121 AASL----YSPTSPTNSGSP------SQAKPIFDMDMVVDQTPYGDSIW 159

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475151|ref|XP_003607861.1| LOB domain-containing protein [Medicago truncatula] gi|355508916|gb|AES90058.1| LOB domain-containing protein [Medicago truncatula]

 Score =  268 bits (685), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 138/174 (79%), Positives = 148/174 (85%), Gaps = 9/174 (5%)

Query: 1   MKESG--RKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKML 58
           MKESG  +KQGA SPCAACKLLRRRCAQDC+FAPYFPADEP KFANVHKVFGASNVNKML
Sbjct: 1   MKESGGNKKQGAASPCAACKLLRRRCAQDCLFAPYFPADEPHKFANVHKVFGASNVNKML 60

Query: 59  QELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRV 118
           Q+LP HQRGDAVSSMVYEANARVRDPVYGCVGAISSLQ QIDVLQTQLA+AQAE VHLRV
Sbjct: 61  QDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRV 120

Query: 119 RQTAS--LSSHGFGPASPSNSGSPSSKLVAS-QTKPIYDMDL----AHYEESMW 165
           RQTAS   +S G  P SP+ SGSPSSK+  S Q K I+DMD+    A Y +SMW
Sbjct: 121 RQTASSFWNSAGHSPTSPTYSGSPSSKINESQQAKNIFDMDMVVDQAAYGDSMW 174

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465115|ref|XP_002270650.1| PREDICTED: LOB domain-containing protein 4 [Vitis vinifera] gi|302143255|emb|CBI20550.3| unnamed protein product [Vitis vinifera]

 Score =  265 bits (678), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 135/172 (78%), Positives = 145/172 (84%), Gaps = 7/172 (4%)

Query: 1   MKESGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQE 60
           MKES RKQGA SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQE
Sbjct: 1   MKESSRKQGAASPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQE 60

Query: 61  LPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQ 120
           LPV QRGDAVSSMVYEANARVRDPVYGCVGAISSLQ QID+LQTQLALAQAEVVHLRVRQ
Sbjct: 61  LPVEQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLALAQAEVVHLRVRQ 120

Query: 121 TASLSS--HGFGPASPSNSGSPSSKLV-ASQTKPIYDMDLA----HYEESMW 165
            ASLS+  H   P++ + S SPSS  +  S TKP ++MD+        ES+W
Sbjct: 121 AASLSTTRHPISPSNSTASPSPSSNFMPPSHTKPFFEMDMVVDHDSLGESVW 172

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455443|ref|XP_004145462.1| PREDICTED: LOB domain-containing protein 4-like [Cucumis sativus] gi|449513057|ref|XP_004164216.1| PREDICTED: LOB domain-containing protein 4-like [Cucumis sativus]

 Score =  251 bits (641), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 131/167 (78%), Positives = 149/167 (89%), Gaps = 4/167 (2%)

Query: 3   ESGRKQGA-PSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQEL 61
           E+GRKQG   +PCAACKLLRRRC ++CVFAPYFPAD+P KFANVHKVFGASNVNKMLQEL
Sbjct: 4   ENGRKQGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQEL 63

Query: 62  PVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQT 121
           P+HQRGDAVSS+VYEANARVRDPVYGCVGAISSLQ+QID LQTQLALAQAEVVHLRVRQT
Sbjct: 64  PIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRVRQT 123

Query: 122 ASLSSHGFGPASPSNSGSPSSKLVASQTKPIYDMDLA---HYEESMW 165
           AS S++G  P SPSNSGSPSS+L+ SQ++ +++MD+      EESMW
Sbjct: 124 ASFSNYGLSPTSPSNSGSPSSRLMGSQSRTMFEMDMVVDQAMEESMW 170

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525770|ref|XP_003531496.1| PREDICTED: LOB domain-containing protein 4-like [Glycine max]

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 126/176 (71%), Positives = 142/176 (80%), Gaps = 10/176 (5%)

Query: 1   MKESGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQE 60
           MKESGRKQG  SPCAACKLLRRRC +DCVFAPYFPADEPQKF +VHKVFGASNVNKMLQE
Sbjct: 1   MKESGRKQGTMSPCAACKLLRRRCTRDCVFAPYFPADEPQKFGSVHKVFGASNVNKMLQE 60

Query: 61  LPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQ 120
           LP HQR DAVSSMVYEANARVRDPVYGCVGAISSLQ Q+DVLQTQLALAQAEVVH+R+RQ
Sbjct: 61  LPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLALAQAEVVHMRMRQ 120

Query: 121 TASLSSHGFGPASP--SNSGSP----SSKLVASQTKPIYDMDL----AHYEESMWT 166
            +  S        P  SNS S     SS+L++SQTK ++ MD+    A+  +S+W+
Sbjct: 121 FSPPSEQQQPSVLPEASNSSSENLYHSSRLLSSQTKSLFGMDMVVDQANMGQSLWS 176

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
TAIR|locus:2197500	172	LBD4 "LOB domain-containing pr	1.0	0.970	0.732	7.1e-61
TAIR|locus:2060842	193	ASL5 [Arabidopsis thaliana (ta	0.712	0.616	0.727	1.2e-44
TAIR|locus:2032931	165	ASL9 "ASYMMETRIC LEAVES 2-like	0.700	0.709	0.697	1.7e-41
TAIR|locus:2061828	224	LBD15 "LOB domain-containing p	0.670	0.5	0.616	5.7e-36
TAIR|locus:2161982	186	LOB "LATERAL ORGAN BOUNDARIES"	0.670	0.602	0.642	7.2e-36
TAIR|locus:2026611	190	LBD1 "LOB domain-containing pr	0.658	0.578	0.645	4e-35
TAIR|locus:2056578	232	LBD11 "LOB domain-containing p	0.676	0.487	0.628	1.3e-34
TAIR|locus:2065769	268	LBD13 "AT2G30340" [Arabidopsis	0.688	0.429	0.582	2.2e-34
TAIR|locus:2034163	199	AS2 "ASYMMETRIC LEAVES 2" [Ara	0.610	0.512	0.676	3.6e-34
TAIR|locus:2089184	159	LBD25 "LOB domain-containing p	0.616	0.647	0.650	5.8e-34

TAIR|locus:2197500 LBD4 "LOB domain-containing protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 126/172 (73%), Positives = 136/172 (79%)

Query:     1 MKESGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQE 60
             MKES RKQGA SPCAACKLLRRRCAQDCVF+PYFPADEPQKFANVH+VFGASNVNKMLQE
Sbjct:     1 MKESSRKQGAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQE 60

Query:    61 LPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQ 120
             LP+HQRGDAVSSMVYEANARVRDPVYGCVGAISSLQ QIDVLQ QLALAQAEVVHLRVRQ
Sbjct:    61 LPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQ 120

Query:   121 TASLSSHXXXXXXXXXXXXXXXKLVASQ-TKPIYD-MDL---AHYEESMWTC 167
             + +   H               K V+ Q  K ++  MD+   A   ESMW+C
Sbjct:   121 STNFPGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWSC 172

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2060842 ASL5 [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 88/121 (72%), Positives = 105/121 (86%)

Query:     9 GAP--SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQR 66
             G P  SPCA+CKLLRRRCA+DC+FAPYFP D+P KFA VHKVFGASNV+KMLQELPVHQR
Sbjct:     2 GGPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQR 61

Query:    67 GDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQTASLSS 126
              DAV+S+V+EANARVRDPVYGCVGAIS LQNQ+  LQ QLA+AQAE++ ++++   +L S
Sbjct:    62 ADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQS 121

Query:   127 H 127
             H
Sbjct:   122 H 122

GO:0005634 "nucleus" evidence=ISM

GO:0003677 "DNA binding" evidence=TAS

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0010016 "shoot system morphogenesis" evidence=IMP

TAIR|locus:2032931 ASL9 "ASYMMETRIC LEAVES 2-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 83/119 (69%), Positives = 97/119 (81%)

Query:     1 MKESGRKQGAP-SPCAACKLLRRRCAQD-CVFAPYFPADEPQKFANVHKVFGASNVNKML 58
             M++ G + G   SPCA CKLLRR+C +D CVFAPYFPA EP KFA VHK+FGASNVNKML
Sbjct:     1 MRQKGHRHGRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKML 60

Query:    59 QELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLR 117
             QEL  + R DAV SMVYEANAR++DPVYGCVG ISSL  Q++ LQTQLA AQAE++H+R
Sbjct:    61 QELSENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIR 119

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2061828 LBD15 "LOB domain-containing protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 69/112 (61%), Positives = 89/112 (79%)

Query:    12 SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVS 71
             +PCAACKLLRRRCAQ+C F+PYF   EP KFA+VHKVFGASNV+KML E+P  QR DA +
Sbjct:    44 TPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAAN 103

Query:    72 SMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQTAS 123
             S+VYEAN R+RDPVYGC+GAIS+LQ Q+  LQ +L   ++E++  + R+  +
Sbjct:   104 SLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREAVA 155

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2161982 LOB "LATERAL ORGAN BOUNDARIES" [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 72/112 (64%), Positives = 86/112 (76%)

Query:    12 SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVS 71
             SPCAACK LRR+C   C+FAPYFP +EP KFANVHK+FGASNV K+L EL  HQR DAV+
Sbjct:    10 SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query:    72 SMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQTAS 123
             S+ YEA ARVRDPVYGCVGAIS LQ Q+  LQ +L  A A++ H  +  +A+
Sbjct:    70 SLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAA 121

GO:0005634 "nucleus" evidence=ISM

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IMP

TAIR|locus:2026611 LBD1 "LOB domain-containing protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 71/110 (64%), Positives = 86/110 (78%)

Query:    12 SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVS 71
             SPCAACK+LRRRCA+ CV APYFP  +P KF   H+VFGASN+ K LQELP  QR DAV+
Sbjct:    32 SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query:    72 SMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQT 121
             SMVYEA AR+RDPVYGC GAI  LQ Q+  LQ QLA AQ E+V+++ +++
Sbjct:    92 SMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRS 141

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2056578 LBD11 "LOB domain-containing protein 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 71/113 (62%), Positives = 86/113 (76%)

Query:    12 SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVS 71
             SPCAACK+LRRRCA  CV APYFP  +P KF   H+VFGASN+ K LQELP  QR DAV+
Sbjct:    54 SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query:    72 SMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQTASL 124
             SMVYEA AR+RDPVYGC GAI  LQ Q+  LQ QLA  Q E+V +++++++ L
Sbjct:   114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLL 166

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2065769 LBD13 "AT2G30340" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 67/115 (58%), Positives = 91/115 (79%)

Query:    12 SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVS 71
             +PCAACKLLRRRCA++C F+PYF   EP KFA VHKVFGASNV+KML E+   QRGDA +
Sbjct:    51 TPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAAN 110

Query:    72 SMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVRQTASLSS 126
             S+VYEAN R+RDP+YGC+GAIS+LQ+ I  LQ++L   + E++  + ++  +++S
Sbjct:   111 SLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQEATTITS 165

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2034163 AS2 "ASYMMETRIC LEAVES 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 69/102 (67%), Positives = 83/102 (81%)

Query:    12 SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVS 71
             SPCAACK LRR+C  +CVFAPYFP D+PQKFANVHKVFGASNV K+L EL   QR DAV+
Sbjct:     8 SPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDAVN 67

Query:    72 SMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEV 113
             S+ YEA+ R+RDPVYGCVG IS LQ+Q+  LQ  L+ A++E+
Sbjct:    68 SLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSEL 109

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009799 "specification of symmetry" evidence=IMP

GO:0009954 "proximal/distal pattern formation" evidence=IGI

GO:0048441 "petal development" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0005654 "nucleoplasm" evidence=IDA

GO:0009943 "adaxial/abaxial axis specification" evidence=IMP

TAIR|locus:2089184 LBD25 "LOB domain-containing protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 67/103 (65%), Positives = 83/103 (80%)

Query:    12 SPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVS 71
             SPCAACK LRR+C  DCVFAPYFP +EP KFANVH++FGASNV+K+L E+  HQR DAV+
Sbjct:    38 SPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAVN 97

Query:    72 SMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVV 114
             S+ YEA AR++DPVYGCVGAIS LQ Q+  LQ +L    A+++
Sbjct:    98 SLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLM 140

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SHE9	LBD4_ARATH	No assigned EC number	0.7906	1.0	0.9709	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	167
pfam03195	101	pfam03195, DUF260, Protein of unknown function DUF	6e-58

>gnl|CDD|190559 pfam03195, DUF260, Protein of unknown function DUF260

 Score =  175 bits (447), Expect = 6e-58
 Identities = 66/100 (66%), Positives = 82/100 (82%)

Query: 13  PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSS 72
           PCAACK LRR+C  DCV APYFPA++P +FANVHK+FGASNV K+L+ LP  QR DA+ S
Sbjct: 1   PCAACKHLRRKCPPDCVLAPYFPAEQPARFANVHKLFGASNVTKLLKALPPEQRDDAMRS 60

Query: 73  MVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAE 112
           ++YEA+AR RDPVYGCVG I SLQ Q++ LQ +LAL +A+
Sbjct: 61  LLYEADARARDPVYGCVGVIWSLQQQLEQLQAELALVKAQ 100

Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	167
PF03195	101	DUF260: Protein of unknown function DUF260; InterP	100.0
COG3416	233	Uncharacterized protein conserved in bacteria [Fun	90.96
PF09849	247	DUF2076: Uncharacterized protein conserved in bact	85.87

>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function

Probab=100.00  E-value=8.5e-52  Score=311.08  Aligned_cols=101  Identities=72%  Similarity=1.230  Sum_probs=99.6

Q ss_pred             CChhhHHhhhCCCCCCccCCCCCCCchHHHHHHHHHhchhhHHHHhhcCCCcchhHHHHHHHHHHhcccCCCCcchhHHH
Q 031034           13 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAI   92 (167)
Q Consensus        13 ~CAACK~lRRrC~~~C~lAPYFPa~~~~~F~~vhkvFG~snv~kmL~~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I   92 (167)
                      +|||||||||||+++|+||||||++++++|++||||||++||+|||+++|+++|+++|+||+|||++|.+||||||+|+|
T Consensus         1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~i   80 (101)
T PF03195_consen    1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGII   80 (101)
T ss_pred             CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 031034           93 SSLQNQIDVLQTQLALAQAEV  113 (167)
Q Consensus        93 ~~Lq~qi~~lq~eLa~~~~el  113 (167)
                      +.||+||+.+++||+.+++||
T Consensus        81 ~~L~~ql~~~~~el~~~~~~l  101 (101)
T PF03195_consen   81 SQLQQQLQQLQAELALVRAQL  101 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHccC
Confidence            999999999999999999875

The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].

>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.96  E-value=3.2  Score=36.03  Aligned_cols=67  Identities=16%  Similarity=0.211  Sum_probs=58.6

Q ss_pred             hHHHHhhcCCCcchhHHHHHHHHHHhcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031034           53 NVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVHLRVR  119 (167)
Q Consensus        53 nv~kmL~~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~~r~~  119 (167)
                      |+..-|+......|+..+..||-||-++.-|--|=-+-.|..+++-|..+++||+.++.+|+.++.-
T Consensus        11 ~lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~~   77 (233)
T COG3416          11 NLFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQAG   77 (233)
T ss_pred             HHHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3445566677789999999999999999999999999999999999999999999999999866553

>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins

Probab=85.87  E-value=6.9  Score=34.02  Aligned_cols=63  Identities=14%  Similarity=0.203  Sum_probs=57.1

Q ss_pred             hHHHHhhcCCCcchhHHHHHHHHHHhcccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031034           53 NVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQNQIDVLQTQLALAQAEVVH  115 (167)
Q Consensus        53 nv~kmL~~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~~el~~  115 (167)
                      ++..-|+.++...|+.-++.||-|+-+|.=|-+|=-+=.|...++=|+.++++|+.++++|..
T Consensus        11 ~lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q   73 (247)
T PF09849_consen   11 DLFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQ   73 (247)
T ss_pred             HHHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344567778888999999999999999999999999999999999999999999999999965

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	167
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	89.19
2er8_A	72	Regulatory protein Leu3; Zn(2)Cys(6) binuclear clu	81.66

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=89.19  E-value=0.65  Score=27.90  Aligned_cols=29  Identities=28%  Similarity=0.538  Sum_probs=25.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031034           89 VGAISSLQNQIDVLQTQLALAQAEVVHLR  117 (167)
Q Consensus        89 vG~I~~Lq~qi~~lq~eLa~~~~el~~~r  117 (167)
                      .|.|-.|+++|..|+.|++.++-||+.+.
T Consensus         1 ~geiaalkqeiaalkkeiaalkfeiaalk   29 (33)
T 4dzn_A            1 XGEIAALKQEIAALKKEIAALKFEIAALK   29 (33)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37889999999999999999999998664

>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A

Probab=81.66  E-value=2.8  Score=27.32  Aligned_cols=21  Identities=10%  Similarity=0.145  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 031034           90 GAISSLQNQIDVLQTQLALAQ  110 (167)
Q Consensus        90 G~I~~Lq~qi~~lq~eLa~~~  110 (167)
                      +.|..|+++|+.|+..|..+.
T Consensus        49 ~~~~~Le~ri~~Le~~l~~l~   69 (72)
T 2er8_A           49 ARNEAIEKRFKELTRTLTNLT   69 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            667777777777777776544

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00