Citrus Sinensis ID: 031079

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160------
Protein Sequence
MVFHFPCHNIDSDGFDRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLVFQ
Secondary Structure (PSIPRED)
cEEEEccccccccHHHEEccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEcc
Coil and Loop (DISEMBL)
mvfhfpchnidsdgfdreNLCLSITATVLSASLLVGLTTSLILFCSHFhqvegdrnvgkmsplvrlgtergsVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTkhipklvfq
Flexible Loop (DISEMBL)
MVFHFPCHNIDSDGFDRENLCLSITATVLSASLLVGLTTSLILFCSHFHqvegdrnvgkmSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLVFQ
Low Complexity Region (SEG)
MVFHFPCHNIDSDGFDRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLVFQ
Disordered region (IsUnstruct)
**FHFPCHNIDSDGFDRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLV**
Disordered Region (DISOPRED)
MVFHFPCHNIDSDGFDRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLVFQ
Disordered Region (DISEMBL)
MVFHFPCHNIDSDGFDRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLVFQ
Disordered Region (DISPRO)
*VFHFPCHNIDSDGFDRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLVFQ
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVFHFPCHNIDSDGFDRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLVFQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	166	2.2.26 [Sep-21-2011]
Q0WUA3	382	1,4-dihydroxy-2-naphthoat	no	no	0.740	0.321	0.634	5e-41
P73962	307	Probable 1,4-dihydroxy-2-	N/A	no	0.746	0.403	0.385	4e-15

>sp|Q0WUA3|MENA_ARATH 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic OS=Arabidopsis thaliana GN=ABC4 PE=1 SV=2

 Score =  166 bits (421), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 78/123 (63%), Positives = 96/123 (78%)

Query: 14  GFDRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSV 73
           G   E   L ++  VLS+S+LVG TTSLILFCSHFHQV+GD  VGK SPLVRLGTE+G+ 
Sbjct: 243 GSSSEMRHLPLSGRVLSSSVLVGFTTSLILFCSHFHQVDGDLAVGKYSPLVRLGTEKGAF 302

Query: 74  VVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYY 133
           VV+W + +LYS+L  +GL+R LPL C  +C +T P+G LV SYVE++HKD GKIFMAKYY
Sbjct: 303 VVRWTIRLLYSMLLVLGLTRILPLPCTLMCFLTLPVGNLVSSYVEKHHKDNGKIFMAKYY 362

Query: 134 CVR 136
           CVR
Sbjct: 363 CVR 365

Involved in the synthesis of phylloquinone (vitamin K1). Catalyzes the transfer of a prenyl chain to 1,4-dihydroxy-2-naphthoate (DHNA).
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 7EC: 4

>sp|P73962|MENA_SYNY3 Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=menA PE=3 SV=1

 Score = 80.9 bits (198), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 74/127 (58%), Gaps = 3/127 (2%)

Query: 23  SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMIL 82
           S +  +L+ S+ VG++T++ILFCSHFHQVE D   GK SP+VRLGT+ GS V+  +V+ L
Sbjct: 176 SFSWNLLTPSVFVGISTAIILFCSHFHQVEDDLAAGKKSPIVRLGTKLGSQVLTLSVVSL 235

Query: 83  YSLLFAIG-LSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALF 141
           Y L+ AIG L    P   + + A + P    ++ +V + H    ++   K+  V  H   
Sbjct: 236 Y-LITAIGVLCHQAPWQTLLIIA-SLPWAVQLIRHVGQYHDQPEQVSNCKFIAVNLHFFS 293

Query: 142 GAALVAG 148
           G  + AG
Sbjct: 294 GMLMAAG 300

Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to dimethylmenaquinone (DMK). Attaches octaprenylpyrophosphate, a membrane-bound 40-carbon side chain to DHNA. The conversion of DHNA to DMK proceeds in three stages: the removal of the carboxyl group of DHNA as CO(2), the attachment of the isoprenoid side chain, and a quinol-to-quinone oxidation, which is thought to be spontaneous.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
449438213	404	PREDICTED: 1,4-dihydroxy-2-naphthoate po	0.891	0.366	0.689	1e-52
224141217	401	predicted protein [Populus trichocarpa]	0.855	0.354	0.725	7e-52
357476309	359	hypothetical protein MTR_4g094100 [Medic	0.813	0.376	0.718	4e-50
356533332	483	PREDICTED: uncharacterized protein LOC10	0.783	0.269	0.723	4e-49
388518453	203	unknown [Lotus japonicus]	0.807	0.660	0.694	9e-49
356577827	416	PREDICTED: uncharacterized protein LOC10	0.783	0.312	0.715	2e-48
356528024	398	PREDICTED: 1,4-dihydroxy-2-naphthoate po	0.783	0.326	0.715	2e-47
297837449	287	hypothetical protein ARALYDRAFT_475272 [	0.843	0.487	0.671	2e-47
356551124	397	PREDICTED: 1,4-dihydroxy-2-naphthoate po	0.783	0.327	0.692	9e-46
296087485	386	unnamed protein product [Vitis vinifera]	0.680	0.292	0.761	1e-43

>gi|449438213|ref|XP_004136884.1| PREDICTED: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic-like [Cucumis sativus] gi|449478849|ref|XP_004155434.1| PREDICTED: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic-like [Cucumis sativus]

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 102/148 (68%), Positives = 122/148 (82%)

Query: 17  RENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVK 76
           RE   L I+ T+LSAS+LVG TT+LILFCSHFHQVEGDR VGKMSPLVRLGTERGS VVK
Sbjct: 255 REMRYLPISNTILSASILVGTTTTLILFCSHFHQVEGDRAVGKMSPLVRLGTERGSKVVK 314

Query: 77  WAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVR 136
            AV++LY LLFA+GLS+ LP +CI  C +T P+GKLVVS+VEENHKDK KIFMAKY+CVR
Sbjct: 315 VAVIMLYVLLFALGLSKNLPFTCILFCGLTIPVGKLVVSFVEENHKDKQKIFMAKYFCVR 374

Query: 137 FHALFGAALVAGLITARILVTKHIPKLV 164
            HA+FG AL AGL+ AR++ T +  + +
Sbjct: 375 LHAIFGLALAAGLVVARLISTINTSRTI 402

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141217|ref|XP_002323971.1| predicted protein [Populus trichocarpa] gi|118485902|gb|ABK94797.1| unknown [Populus trichocarpa] gi|222866973|gb|EEF04104.1| predicted protein [Populus trichocarpa]

 Score =  208 bits (529), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 103/142 (72%), Positives = 118/142 (83%)

Query: 14  GFDRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSV 73
           G   E   L +T T+LSASLLVG TT+LILFCSHFHQVE D+ VGK SPLVRLGTERGS 
Sbjct: 255 GSTSEMSILPLTGTILSASLLVGFTTTLILFCSHFHQVEEDKAVGKFSPLVRLGTERGSG 314

Query: 74  VVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYY 133
           VVK AV +LYSLLFA GLSR LPL+CI LC++T P+GKLVV +VEEN+KDKGKIFMAKY+
Sbjct: 315 VVKVAVAMLYSLLFASGLSRTLPLACILLCSLTLPMGKLVVGFVEENYKDKGKIFMAKYF 374

Query: 134 CVRFHALFGAALVAGLITARIL 155
           CVR HALFGAAL +GL+ AR+ 
Sbjct: 375 CVRLHALFGAALASGLVAARVF 396

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476309|ref|XP_003608440.1| hypothetical protein MTR_4g094100 [Medicago truncatula] gi|355509495|gb|AES90637.1| hypothetical protein MTR_4g094100 [Medicago truncatula]

 Score =  202 bits (514), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 97/135 (71%), Positives = 117/135 (86%)

Query: 24  ITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILY 83
           ++ TVLSAS+LVG TTSLILFCSHFHQV+GD  VGK+SPLVRLGTERG+ VVK AV+ LY
Sbjct: 221 LSGTVLSASVLVGFTTSLILFCSHFHQVDGDEEVGKLSPLVRLGTERGAEVVKAAVLSLY 280

Query: 84  SLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGA 143
           +LL A GLS+ALPL+CIFLCA+T PIG LV+ +V++NHKDK KIFMAKY+CVR HALFGA
Sbjct: 281 ALLVAFGLSKALPLTCIFLCALTLPIGNLVIKFVQDNHKDKDKIFMAKYFCVRLHALFGA 340

Query: 144 ALVAGLITARILVTK 158
           AL  GL+ AR++ +K
Sbjct: 341 ALAFGLVLARMVNSK 355

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533332|ref|XP_003535219.1| PREDICTED: uncharacterized protein LOC100788238 [Glycine max]

 Score =  199 bits (505), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 94/130 (72%), Positives = 112/130 (86%)

Query: 24  ITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILY 83
           ++ TVLSAS+LVG TTSLILFCSHFHQVEGDR VGKMSPLVRLGT++G+ VVK A+ +LY
Sbjct: 308 LSGTVLSASILVGFTTSLILFCSHFHQVEGDREVGKMSPLVRLGTKKGAEVVKGAIFMLY 367

Query: 84  SLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGA 143
           +LL A GL +ALPL+CIFLCA+T P+G LVV +VE+N+KDK KIFMAKY+CVR HALFG 
Sbjct: 368 ALLVAFGLIKALPLTCIFLCALTLPMGNLVVRFVEDNYKDKNKIFMAKYFCVRLHALFGV 427

Query: 144 ALVAGLITAR 153
           AL  GL+ AR
Sbjct: 428 ALALGLVLAR 437

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518453|gb|AFK47288.1| unknown [Lotus japonicus]

 Score =  197 bits (502), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 93/134 (69%), Positives = 113/134 (84%)

Query: 24  ITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILY 83
           ++ TVLSAS+LVG TTSLILFCSHFHQVEGD+ VGKMSPLVRLGT RG+ VV+  V++LY
Sbjct: 61  LSGTVLSASILVGFTTSLILFCSHFHQVEGDKEVGKMSPLVRLGTNRGAEVVQVVVLMLY 120

Query: 84  SLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGA 143
           +LLF  GLS+ALPL+CI LC +T P+G LVV +V+ENHKDK KIFMAKY+CVR HALFG 
Sbjct: 121 ALLFTFGLSKALPLTCILLCTLTLPMGNLVVRFVQENHKDKSKIFMAKYFCVRLHALFGT 180

Query: 144 ALVAGLITARILVT 157
           AL  G++ AR++ T
Sbjct: 181 ALAFGMVLARVVNT 194

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577827|ref|XP_003557023.1| PREDICTED: uncharacterized protein LOC100813101, partial [Glycine max]

 Score =  196 bits (498), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/130 (71%), Positives = 111/130 (85%)

Query: 24  ITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILY 83
           ++ TVLSAS+LVG TTSLILFCSHFHQVEGDR VGKMSPLVRLGT++G+ VVK A+ +LY
Sbjct: 246 LSGTVLSASILVGFTTSLILFCSHFHQVEGDREVGKMSPLVRLGTKKGAEVVKGAIFMLY 305

Query: 84  SLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGA 143
           +LL A GL +ALPL+CIFLCA+T P+G LVV +VE+N+KDK KIFMAKY+CVR HALFG 
Sbjct: 306 ALLVAFGLIKALPLTCIFLCALTLPMGNLVVRFVEDNYKDKNKIFMAKYFCVRLHALFGV 365

Query: 144 ALVAGLITAR 153
            L  GL+ AR
Sbjct: 366 TLALGLVLAR 375

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528024|ref|XP_003532605.1| PREDICTED: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic-like [Glycine max]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 93/130 (71%), Positives = 112/130 (86%)

Query: 24  ITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILY 83
           ++ TVLSAS+LVG TTSLILFCSHFHQVEGD+ VGKMSPLVRLGT++G+ VVK AV +LY
Sbjct: 258 LSGTVLSASILVGFTTSLILFCSHFHQVEGDKEVGKMSPLVRLGTKKGAEVVKGAVFMLY 317

Query: 84  SLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGA 143
           +LL A GL +ALPL+CIFLCA+T P+G LVV +VE+N+K+K KIFMAKY+CVR HALFG 
Sbjct: 318 ALLVAFGLIKALPLTCIFLCALTLPMGNLVVRFVEDNYKNKNKIFMAKYFCVRLHALFGV 377

Query: 144 ALVAGLITAR 153
           AL  GL+ AR
Sbjct: 378 ALALGLVLAR 387

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297837449|ref|XP_002886606.1| hypothetical protein ARALYDRAFT_475272 [Arabidopsis lyrata subsp. lyrata] gi|297332447|gb|EFH62865.1| hypothetical protein ARALYDRAFT_475272 [Arabidopsis lyrata subsp. lyrata]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/140 (67%), Positives = 110/140 (78%)

Query: 14  GFDRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSV 73
           G   E   L ++  VLS+SLLVG TTSLILFCSHFHQV+GD  VGK SPLVRLGTE+G+ 
Sbjct: 148 GSSSEMRHLPLSGRVLSSSLLVGFTTSLILFCSHFHQVDGDLAVGKYSPLVRLGTEKGAF 207

Query: 74  VVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYY 133
           VV+WA+ +LYS+L  +GLSR LPL C  +C +T PIG LV SYVE++HKD GKIFMAKYY
Sbjct: 208 VVRWAIRLLYSMLLVLGLSRILPLPCTLMCFLTLPIGNLVSSYVEKHHKDNGKIFMAKYY 267

Query: 134 CVRFHALFGAALVAGLITAR 153
           CVR HALFGAAL  GL+ AR
Sbjct: 268 CVRLHALFGAALSLGLVIAR 287

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551124|ref|XP_003543928.1| PREDICTED: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic-like [Glycine max]

 Score =  187 bits (476), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 90/130 (69%), Positives = 109/130 (83%)

Query: 24  ITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILY 83
           ++ TVLSAS+LVG TTSLILFCSHFHQVEGD+ VGKMSPLVRLG ++G+ VVK AV +LY
Sbjct: 257 LSGTVLSASILVGFTTSLILFCSHFHQVEGDKEVGKMSPLVRLGNKKGAEVVKGAVFMLY 316

Query: 84  SLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGA 143
           +LL A GL +ALPL+CI LC +T P+G LVV +VE+N+KDK KIFMAKY+CVR HA+FG 
Sbjct: 317 ALLVAFGLIKALPLTCISLCTLTLPLGNLVVRFVEDNYKDKNKIFMAKYFCVRLHAMFGV 376

Query: 144 ALVAGLITAR 153
           AL  GL+ AR
Sbjct: 377 ALALGLVLAR 386

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087485|emb|CBI34074.3| unnamed protein product [Vitis vinifera]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/113 (76%), Positives = 98/113 (86%)

Query: 24  ITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILY 83
           +TATVLSASLLVG TT+LILFCSHFHQVEGDR VGKMSPLVRL TE+GS +VK A+ +LY
Sbjct: 252 VTATVLSASLLVGFTTTLILFCSHFHQVEGDRAVGKMSPLVRLDTEKGSRIVKMAMAMLY 311

Query: 84  SLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVR 136
           SLL A GL++ LP +CIF CA+T P+ KLVVSYVE+NHKD  KIFMAKYYCVR
Sbjct: 312 SLLLAFGLAKTLPFTCIFSCALTIPMAKLVVSYVEDNHKDNSKIFMAKYYCVR 364

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
TAIR|locus:2036484	382	ABC4 "ABERRANT CHLOROPLAST DEV	0.843	0.366	0.635	9.1e-45

TAIR|locus:2036484 ABC4 "ABERRANT CHLOROPLAST DEVELOPMENT 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 89/140 (63%), Positives = 108/140 (77%)

Query:    14 GFDRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSV 73
             G   E   L ++  VLS+S+LVG TTSLILFCSHFHQV+GD  VGK SPLVRLGTE+G+ 
Sbjct:   243 GSSSEMRHLPLSGRVLSSSVLVGFTTSLILFCSHFHQVDGDLAVGKYSPLVRLGTEKGAF 302

Query:    74 VVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYY 133
             VV+W + +LYS+L  +GL+R LPL C  +C +T P+G LV SYVE++HKD GKIFMAKYY
Sbjct:   303 VVRWTIRLLYSMLLVLGLTRILPLPCTLMCFLTLPVGNLVSSYVEKHHKDNGKIFMAKYY 362

Query:   134 CVRFHALFGAALVAGLITAR 153
             CVR HAL GAAL  GL+ AR
Sbjct:   363 CVRLHALLGAALSLGLVIAR 382


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.330   0.142   0.434    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      166       166   0.00097  107 3  11 22  0.40    31
                                                     30  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  586 (62 KB)
  Total size of DFA:  147 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.56u 0.15s 14.71t   Elapsed:  00:00:01
  Total cpu time:  14.56u 0.15s 14.71t   Elapsed:  00:00:01
  Start:  Fri May 10 10:06:36 2013   End:  Fri May 10 10:06:37 2013

GO:0004659 "prenyltransferase activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009772 "photosynthetic electron transport in photosystem II" evidence=IMP

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0042372 "phylloquinone biosynthetic process" evidence=IMP

GO:0046428 "1,4-dihydroxy-2-naphthoate octaprenyltransferase activity" evidence=ISS

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	166
PLN02922	315	PLN02922, PLN02922, prenyltransferase	2e-72
PRK07419	304	PRK07419, PRK07419, 1,4-dihydroxy-2-naphthoate oct	6e-34
TIGR02235	285	TIGR02235, menA_cyano-plnt, 1,4-dihydroxy-2-naphth	2e-27
COG1575	303	COG1575, MenA, 1,4-dihydroxy-2-naphthoate octapren	1e-07
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	0.002

>gnl|CDD|215499 PLN02922, PLN02922, prenyltransferase

 Score =  219 bits (560), Expect = 2e-72
 Identities = 98/132 (74%), Positives = 114/132 (86%)

Query: 22  LSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMI 81
           L +T TVLSAS+LVGLTT+LILFCSHFHQ++GDR VGKMSPLVRLGTE+GS VV+WAV++
Sbjct: 184 LPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLL 243

Query: 82  LYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALF 141
           LYSLL A+GL +ALPL C  LC +T P+GKLVV +VE+NHKD  KIFMAKYYCVR HALF
Sbjct: 244 LYSLLAALGLLKALPLPCALLCFLTLPLGKLVVDFVEKNHKDNAKIFMAKYYCVRLHALF 303

Query: 142 GAALVAGLITAR 153
           GAAL  GL+ AR
Sbjct: 304 GAALALGLVLAR 315

Length = 315

>gnl|CDD|236015 PRK07419, PRK07419, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

 Score =  120 bits (304), Expect = 6e-34
 Identities = 57/133 (42%), Positives = 80/133 (60%), Gaps = 1/133 (0%)

Query: 23  SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMIL 82
           S +   L+AS+++GL TSLILFCSHFHQVE D   GK SP+VRLGT+RG+ ++ W V ++
Sbjct: 171 SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLI 230

Query: 83  YSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFG 142
           Y+L     L    P + + L  ++ P    ++  V ENH    K+  +K+  VRFH   G
Sbjct: 231 YALELLPVLLGFWPWTTL-LSLLSLPFAIKLIRLVRENHDQPEKVSNSKFIAVRFHFWSG 289

Query: 143 AALVAGLITARIL 155
             L  GLI A +L
Sbjct: 290 LLLSLGLILAYLL 302

Length = 304

>gnl|CDD|131289 TIGR02235, menA_cyano-plnt, 1,4-dihydroxy-2-naphthoate phytyltransferase

 Score =  103 bits (258), Expect = 2e-27
 Identities = 53/128 (41%), Positives = 72/128 (56%), Gaps = 1/128 (0%)

Query: 23  SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMIL 82
           S +     AS+LVGL T+LILFCSHFHQVE D   GK SP+VRLGT+  + +V W + + 
Sbjct: 158 SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLS 217

Query: 83  YSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFG 142
           Y +L    +   LP + +   A      KL +  V +NH +  +I   K+  VRFH L G
Sbjct: 218 YVVLLIAVIGGFLPWTTLLALASIPWAVKL-IRLVRQNHNNPEQISNCKFIAVRFHFLSG 276

Query: 143 AALVAGLI 150
             L  GL+
Sbjct: 277 ILLTLGLL 284

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 285

>gnl|CDD|224491 COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 27  TVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLL 86
            +L  SL VG+  + IL  ++   +E D   GK +  VRLG +    +  +A +++ + L
Sbjct: 177 AILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKL--YAALLVVAYL 234

Query: 87  FAIGLSRALPLSCIFL 102
             +            L
Sbjct: 235 AIVIFVILGLFPVWGL 250

Length = 303

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 25/107 (23%), Positives = 43/107 (40%)

Query: 24  ITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILY 83
           I + +L  +L V L +  IL  +    VEGDR  G  +  VRLG +R   +    +    
Sbjct: 144 IPSPLLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPVRLGRKRALALYALLLAAAL 203

Query: 84  SLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMA 130
            LL  + L  A  L  + +  +   +          N ++  + F+ 
Sbjct: 204 LLLLLLLLLLAPLLLLLAVLLLALALLVAARLLRRRNPEEPARTFLF 250

Length = 259

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	166
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.97
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.97
PLN02922	315	prenyltransferase	99.96
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.96
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.96
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.96
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.91
PRK05951	296	ubiA prenyltransferase; Reviewed	99.91
PRK13105	282	ubiA prenyltransferase; Reviewed	99.85
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	99.82
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	99.81
PLN00012	375	chlorophyll synthetase; Provisional	99.69
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	99.67
PRK12872	285	ubiA prenyltransferase; Reviewed	99.56
KOG4581	359	consensus Predicted membrane protein [Function unk	99.53
PRK13591	307	ubiA prenyltransferase; Provisional	99.48
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.45
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	99.4
PRK12888	284	ubiA prenyltransferase; Reviewed	99.38
PRK12884	279	ubiA prenyltransferase; Reviewed	99.36
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	99.35
PRK12392	331	bacteriochlorophyll c synthase; Provisional	99.34
PRK12875	282	ubiA prenyltransferase; Reviewed	99.25
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	99.23
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.23
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	99.2
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.2
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.19
PRK12871	297	ubiA prenyltransferase; Reviewed	99.19
PRK12886	291	ubiA prenyltransferase; Reviewed	99.17
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.16
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	99.11
PRK12874	291	ubiA prenyltransferase; Reviewed	99.1
PLN02878	280	homogentisate phytyltransferase	99.04
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	99.0
PRK12882	276	ubiA prenyltransferase; Reviewed	98.96
PRK13106	300	ubiA prenyltransferase; Reviewed	98.91
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	98.87
PRK04375	296	protoheme IX farnesyltransferase; Provisional	98.85
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	98.4
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	98.37
PRK12895	286	ubiA prenyltransferase; Reviewed	98.37
PRK12876	300	ubiA prenyltransferase; Reviewed	98.18
PRK13595	292	ubiA prenyltransferase; Provisional	98.1
PRK13362	306	protoheme IX farnesyltransferase; Provisional	98.03
PRK12873	294	ubiA prenyltransferase; Reviewed	97.58
PRK13592	299	ubiA prenyltransferase; Provisional	96.61
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	95.55
PLN02776	341	prenyltransferase	94.88
PRK12884	279	ubiA prenyltransferase; Reviewed	94.75
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	94.5
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	94.16
PRK12873	294	ubiA prenyltransferase; Reviewed	94.1
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	94.05
PRK08238	479	hypothetical protein; Validated	93.3
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	92.97
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	92.9
PRK12872	285	ubiA prenyltransferase; Reviewed	92.5
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	92.29
PRK12882	276	ubiA prenyltransferase; Reviewed	91.96
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	91.8
PRK12895	286	ubiA prenyltransferase; Reviewed	91.78
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	91.45
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	91.3
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	91.18
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	89.99
PLN02776	341	prenyltransferase	89.87
PRK12886	291	ubiA prenyltransferase; Reviewed	89.54
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	89.2
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	88.85
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	88.8
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	88.05
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	87.71
PRK12875	282	ubiA prenyltransferase; Reviewed	87.48
PRK13106	300	ubiA prenyltransferase; Reviewed	87.17
PRK12392	331	bacteriochlorophyll c synthase; Provisional	87.13
PRK12876	300	ubiA prenyltransferase; Reviewed	87.1
PRK12874	291	ubiA prenyltransferase; Reviewed	86.53
PLN00012	375	chlorophyll synthetase; Provisional	86.25
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	85.04
PRK04375	296	protoheme IX farnesyltransferase; Provisional	84.88
PRK13595	292	ubiA prenyltransferase; Provisional	84.68
PRK13592	299	ubiA prenyltransferase; Provisional	84.57
PRK13362	306	protoheme IX farnesyltransferase; Provisional	83.7
PRK12871	297	ubiA prenyltransferase; Reviewed	80.19

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.97  E-value=3.9e-31  Score=226.55  Aligned_cols=134  Identities=43%  Similarity=0.662  Sum_probs=127.0

Q ss_pred             eeeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Q 031079           21 CLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCI  100 (166)
Q Consensus        21 ~~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l  100 (166)
                      ..+++++.+++|+|+|+++++||++||+||+|+||++||||++||+|+++|+++|.++...+|++++.++..|..|+|++
T Consensus       169 t~~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~g~~p~~~L  248 (304)
T PRK07419        169 TPSWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLGFWPWTTL  248 (304)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031079          101 FLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARIL  155 (166)
Q Consensus       101 ~l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~~~  155 (166)
                       ++++++|++++.+|.++++.++++++++.++.|++.+++||+++++|++++..+
T Consensus       249 -l~ll~lPl~~~~~~~~~~~~~~~~~l~~~l~~t~~~~~l~g~l~~l~~~l~~~~  302 (304)
T PRK07419        249 -LSLLSLPFAIKLIRLVRENHDQPEKVSNSKFIAVRFHFWSGLLLSLGLILAYLL  302 (304)
T ss_pred             -HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence             999999999999999987766788999999999999999999999999997764

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.97  E-value=1.8e-30  Score=220.48  Aligned_cols=128  Identities=41%  Similarity=0.661  Sum_probs=122.3

Q ss_pred             eeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Q 031079           22 LSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIF  101 (166)
Q Consensus        22 ~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~  101 (166)
                      .+++++++++|+|+|+++++||++||+||+|+||++||||++||+|+++|+++|..+...+|++++.++..|..|++++ 
T Consensus       157 ~~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~~~l-  235 (285)
T TIGR02235       157 QSFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGFLPWTTL-  235 (285)
T ss_pred             CcCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-
Confidence            4789999999999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             HHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079          102 LCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLI  150 (166)
Q Consensus       102 l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lgll  150 (166)
                      +.++++|++++.+|.++++.++++++++.++.|++.+++||+++++|++
T Consensus       236 l~ll~lPl~~~~~~~~~~~~~~~~~l~~~l~~t~~~~~~~g~l~~~g~~  284 (285)
T TIGR02235       236 LALASIPWAVKLIRLVRQNHNNPEQISNCKFIAVRFHFLSGILLTLGLL  284 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999877667889999999999999999999999986

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PLN02922 prenyltransferase

Probab=99.96  E-value=5.2e-29  Score=214.29  Aligned_cols=130  Identities=74%  Similarity=1.236  Sum_probs=120.7

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 031079           23 SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFL  102 (166)
Q Consensus        23 ~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l  102 (166)
                      +++++.+++|+|+|+++++||++||+||+|+||++||||++||+|+++|+++|.+++..+|++++.++..+..|+|++++
T Consensus       185 ~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~~~~l~  264 (315)
T PLN02922        185 PLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLKALPLPCALL  264 (315)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999899886437


Q ss_pred             HHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079          103 CAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITA  152 (166)
Q Consensus       103 ~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~  152 (166)
                      .++++|++.+..+.++++.++++++.+.++.|++.+++||+++++|++++
T Consensus       265 ~ll~lpl~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l~g~ll~~g~~l~  314 (315)
T PLN02922        265 CFLTLPLGKLVVDFVEKNHKDNAKIFMAKYYCVRLHALFGAALALGLVLA  314 (315)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            88889999999998877666688999999999999999999999999875

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.96  E-value=9.6e-29  Score=211.02  Aligned_cols=135  Identities=19%  Similarity=0.267  Sum_probs=125.3

Q ss_pred             ccceeeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhH
Q 031079           18 ENLCLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPL   97 (166)
Q Consensus        18 ~~~~~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~   97 (166)
                      +.--..++|..+++|+|+|+++++||++||+||+|+|+++||||||||+|+++|+++|.+++..+|+++++++..+..++
T Consensus       168 yiqt~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~~~~~~  247 (303)
T COG1575         168 YIQTGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGLFPV  247 (303)
T ss_pred             HHhcccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence            33356789999999999999999999999999999999999999999999999999999999999999999988888888


Q ss_pred             HHHHHHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079           98 SCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI  154 (166)
Q Consensus        98 ~~l~l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~~  154 (166)
                      |.+ +.++++|+++|..|.+++++. |.++.+.++.+++...++++++.+|++++.+
T Consensus       248 ~~l-l~ll~~Pl~ir~~r~v~~~~~-~~~~~p~l~~~~~~~~~~~~l~~~~i~~~~l  302 (303)
T COG1575         248 WGL-LFLLALPLAIRAARPVRQNQV-PATLVPMLKNTVKANLLWNLLLAVGILLSQL  302 (303)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHhccC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            887 999999999999999988754 5689999999999999999999999998754

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.96  E-value=5.8e-29  Score=211.22  Aligned_cols=126  Identities=15%  Similarity=0.180  Sum_probs=118.0

Q ss_pred             eeeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Q 031079           21 CLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCI  100 (166)
Q Consensus        21 ~~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l  100 (166)
                      ..+++++.++.|+|+|+++++||++||+||+|+|+++||||++||+|+++|+++|.+++..+|++++.++..+..|+|++
T Consensus       159 ~~~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~~~~p~~~l  238 (284)
T TIGR00751       159 AHRVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLATPISWWCV  238 (284)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence            34789999999999999999999999999999999999999999999999999999999999999988888888899998


Q ss_pred             HHHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 031079          101 FLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAG  148 (166)
Q Consensus       101 ~l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lg  148 (166)
                       +.++++|++++.+|.++++ ++++++++.++.|++.+++|++++++|
T Consensus       239 -l~ll~lPl~~~~~~~~~~~-~~~~~l~~~l~~t~~~~~l~~~l~~ig  284 (284)
T TIGR00751       239 -LFLLAAPLLLKAAGPVRSG-RGPRELRPVLRDTGLAMLLWNLLFALG  284 (284)
T ss_pred             -HHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence             9999999999999999774 457899999999999999999999875

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.96  E-value=2.1e-28  Score=210.57  Aligned_cols=124  Identities=19%  Similarity=0.194  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhhHHh
Q 031079           30 SASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPI  109 (166)
Q Consensus        30 l~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l~ll~lPl  109 (166)
                      ++|+|+|+++++||++||+||+|+||++||||+|||+|+|+|+++|.++...+|++++..+..|..|++++ ++++++|+
T Consensus       193 l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~~g~lp~~~l-l~ll~lP~  271 (317)
T PRK13387        193 VISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVLMGYISPWAL-LSFLTLRK  271 (317)
T ss_pred             HHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHH
Confidence            39999999999999999999999999999999999999999999999999999999999999999999998 99999999


Q ss_pred             HHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079          110 GKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI  154 (166)
Q Consensus       110 a~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~~  154 (166)
                      +++.+|.++++.++++++++.+++|++.++.+++++++|++++.+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~ll~~~  316 (317)
T PRK13387        272 PISNLQSFQKEAKDPKYFVIAIRNTVLTNTTFGFLLSASLLIQYL  316 (317)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999998776778899999999999999999999999998653

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.91  E-value=1.3e-23  Score=177.43  Aligned_cols=129  Identities=19%  Similarity=0.268  Sum_probs=120.4

Q ss_pred             eeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Q 031079           22 LSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIF  101 (166)
Q Consensus        22 ~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~  101 (166)
                      ..+++++++.++|.++++++++++||+||+|+||++||||+|||+|+++++++|..+..++|++.+..+..|..|++.+ 
T Consensus       164 ~~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~l-  242 (293)
T PRK06080        164 GTVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLGLASPWGL-  242 (293)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-
Confidence            3578999999999999999999999999999999999999999999999999999999999999999999898999998 


Q ss_pred             HHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079          102 LCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITA  152 (166)
Q Consensus       102 l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~  152 (166)
                      +.++++|.+.+..+.+++++ ++++..+..+.+++.+..+++++++|++++
T Consensus       243 l~ll~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (293)
T PRK06080        243 LFLLSLPLAVKAARPVLRKQ-KPETLIPALKATGKTNLLFGLLFAIGLLLS  292 (293)
T ss_pred             HHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999887664 567888999999999999999999999874

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.91  E-value=1.9e-23  Score=177.88  Aligned_cols=126  Identities=16%  Similarity=0.263  Sum_probs=112.1

Q ss_pred             eeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Q 031079           22 LSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIF  101 (166)
Q Consensus        22 ~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~  101 (166)
                      .++++++++.|+|+|++++++|++||+||+|+||++||||+|||+|++++ ++|..+...+|++++.++..|..|++++ 
T Consensus       167 ~~~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l-  244 (296)
T PRK05951        167 GNLSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISL-  244 (296)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHH-
Confidence            35788999999999999999999999999999999999999999999999 8999999999999999999999999998 


Q ss_pred             HHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079          102 LCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI  154 (166)
Q Consensus       102 l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~~  154 (166)
                      +.++++|++.+..+...+..+ .++    ...|++.++++|+++++|++++..
T Consensus       245 ~~ll~lp~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~g~l~~~~~~l~~~  292 (296)
T PRK05951        245 WALLSLLVAYALCLWQLRKFP-PDP----DEATVQLFMLFGYLYILATLLSAL  292 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhhCc-ccc----cHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999988887765432 222    347999999999999999998754

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.85  E-value=1.6e-20  Score=159.73  Aligned_cols=121  Identities=16%  Similarity=0.048  Sum_probs=105.9

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 031079           23 SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFL  102 (166)
Q Consensus        23 ~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l  102 (166)
                      .+++..++.+.++|+++++++.+||+||+|+||++||||+|||+|+++|.+++..+..+++++.+.   .+. +. .+ +
T Consensus       157 ~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~---~~~-~~-~~-l  230 (282)
T PRK13105        157 PFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLA---LPW-PG-WL-A  230 (282)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHH---HHh-HH-HH-H
Confidence            467788999999999999999999999999999999999999999999999999999999877762   232 22 44 7


Q ss_pred             HHhhHHhHHHHHHHHH-hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079          103 CAMTSPIGKLVVSYVE-ENHKDKGKIFMAKYYCVRFHALFGAALVAGLI  150 (166)
Q Consensus       103 ~ll~lPla~~~~~~~~-~~~~~~~~l~~~l~~t~~~~ll~glLl~lgll  150 (166)
                      .++++|++++..|.+. ++ ++|+++++.++.|++.++++|++++++.+
T Consensus       231 ~ll~~p~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~l~~~~~~  278 (282)
T PRK13105        231 AVLALPYVVNTARFWSVTD-ADCERANRGWRRFLWLNYVSGFLVTMLLI  278 (282)
T ss_pred             HHHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999998886 44 46889999999999999999999999554

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=99.82  E-value=1.6e-19  Score=152.29  Aligned_cols=120  Identities=17%  Similarity=0.210  Sum_probs=101.1

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 031079           23 SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFL  102 (166)
Q Consensus        23 ~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l  102 (166)
                      .++++.++.++++|+++.+++.+||+||+|+||++||||+||++|+++++++|..++..+|++.+........|++..++
T Consensus       158 ~~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~  237 (283)
T TIGR01476       158 PLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLIWGQPWVATIV  237 (283)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence            47888999999999999999999999999999999999999999999999999999988887776544444456553326


Q ss_pred             HHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHH
Q 031079          103 CAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAAL  145 (166)
Q Consensus       103 ~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl  145 (166)
                      .++..|..++..+.+++   ++++.++.++.|++.++.+|.+.
T Consensus       238 ~ll~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  277 (283)
T TIGR01476       238 FLLLVAQIYNQIKLFLR---DPQQNYVRYNATANPFYVLGMLA  277 (283)
T ss_pred             HHHHHHHHHHHHHHHHh---ChHHhhHHhhhhcHHHHHHHHHH
Confidence            67777888888887754   35678889999999999999776

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=99.81  E-value=2e-19  Score=153.97  Aligned_cols=118  Identities=21%  Similarity=0.198  Sum_probs=100.4

Q ss_pred             eeeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHh-cchhHHH
Q 031079           21 CLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLS-RALPLSC   99 (166)
Q Consensus        21 ~~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~-g~~p~~~   99 (166)
                      +.+++++.++.++++++++.+++++||+||+|+|+++||||+||++|++++++++..++..+|.+.+.+... +..|++.
T Consensus       178 ~g~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  257 (306)
T TIGR02056       178 FGELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAYLLAIGENLYAA  257 (306)
T ss_pred             hCCCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            357889999999999999999999999999999999999999999999999999999988888776665544 4455555


Q ss_pred             HHHHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHH
Q 031079          100 IFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFG  142 (166)
Q Consensus       100 l~l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~g  142 (166)
                      + +.++++|...+..|.+++   ++++.++.++.|++.....|
T Consensus       258 l-l~ll~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  296 (306)
T TIGR02056       258 A-LVALIIPQITFQDKYFLK---DPLKNDVKYQASAQPFLVLG  296 (306)
T ss_pred             H-HHHHHHHHHHHHHHHHHh---ChHhhCcchhhhhhHHHHHH
Confidence            6 889999999999998865   46778888889888655555

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PLN00012 chlorophyll synthetase; Provisional

Probab=99.69  E-value=5.7e-16  Score=136.42  Aligned_cols=122  Identities=20%  Similarity=0.160  Sum_probs=97.0

Q ss_pred             eeeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHh-cchhHHH
Q 031079           21 CLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLS-RALPLSC   99 (166)
Q Consensus        21 ~~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~-g~~p~~~   99 (166)
                      +..++++.++.+++.++++.+++++||+||+|+|+++||||+||++|++++++++..++.+.+.+.+..... +..++..
T Consensus       247 ~g~~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~~~l~~~~~~~y~~  326 (375)
T PLN00012        247 FGTLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVAGYLLAIGKPYYAL  326 (375)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            357888999999999999999999999999999999999999999999999999876666665544433322 2233334


Q ss_pred             HHHHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHH
Q 031079          100 IFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALV  146 (166)
Q Consensus       100 l~l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~  146 (166)
                      + +.++.+|......+.+.+   +|.+.++.+..|++..+++|++..
T Consensus       327 ~-~~~l~l~~l~~~~~~~~~---~p~~~~~~~~~~a~~~~~~~~l~~  369 (375)
T PLN00012        327 A-LLGLIIPQIFFQFKYFLP---DPVKNDVKYQASAQPFLVFGLLVT  369 (375)
T ss_pred             H-HHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 566777888777776653   688899999999999999997654

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=99.67  E-value=7.5e-16  Score=132.32  Aligned_cols=124  Identities=19%  Similarity=0.175  Sum_probs=92.3

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 031079           23 SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFL  102 (166)
Q Consensus        23 ~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l  102 (166)
                      ..++..++.+++.++.+.+++.+||+||+|+||++||||+||++|++++++++..++..+|++++.+......+++..+.
T Consensus       186 ~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~  265 (314)
T PRK07566        186 LPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVIALLLAWGQPLYAAIV  265 (314)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999988765443332233333215


Q ss_pred             HHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079          103 CAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLIT  151 (166)
Q Consensus       103 ~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll  151 (166)
                      .++..|+.....+..+    ++++.+.....+.+...+++++ ..|+++
T Consensus       266 ~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ll-~~~~~~  309 (314)
T PRK07566        266 GLLLIPQITLQDRLLR----DPLERDVWYNASAQPFYVLGML-VTALAI  309 (314)
T ss_pred             HHHHHHHHHHHHHHhh----ChhhcChhhhhhhhHHHHHHHH-HHHHHh
Confidence            5667777766655532    2334556667777776666544 344444

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.56  E-value=1.1e-13  Score=116.14  Aligned_cols=97  Identities=18%  Similarity=0.172  Sum_probs=83.2

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 031079           23 SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFL  102 (166)
Q Consensus        23 ~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l  102 (166)
                      .++++.++.++...+++.+....||+||+|+||++|+||+|+++|++++++++..+..+++++.+..+..|..|++.+ +
T Consensus       158 ~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  236 (285)
T PRK12872        158 TIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPLLLL-V  236 (285)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHH-H
Confidence            357788899999999999999999999999999999999999999999999999999999999988888888888877 6


Q ss_pred             HHhhHHhHHHHHHHHHhh
Q 031079          103 CAMTSPIGKLVVSYVEEN  120 (166)
Q Consensus       103 ~ll~lPla~~~~~~~~~~  120 (166)
                      .++..|..+...+.+.++
T Consensus       237 ~~~~~~~~~~~~~~~~~~  254 (285)
T PRK12872        237 LLLLLAYVLYYIIKLFAA  254 (285)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            666666666555555444

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=99.53  E-value=1.7e-14  Score=120.39  Aligned_cols=132  Identities=18%  Similarity=0.268  Sum_probs=107.9

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Q 031079           24 ITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLC  103 (166)
Q Consensus        24 ~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l~  103 (166)
                      +.|..+.-++|..+-+-+||+.||.||.|+||++|.-|+++.+|+..+-.+|..++.++|.+..++..-  -..|-. +.
T Consensus       227 l~~~~l~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~--~si~~~-lp  303 (359)
T KOG4581|consen  227 LAIFPLGYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALH--CSISFA-LP  303 (359)
T ss_pred             eeEEeehheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-hH
Confidence            344445567889999999999999999999999999999999999999999999999999876655432  345555 78


Q ss_pred             HhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 031079          104 AMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPK  162 (166)
Q Consensus       104 ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~~~~~~~~~~  162 (166)
                      ++++|.+.+.-|.++.+    +.++.+-.+|+|+.+.+|++...+.+.+.-+-+-..||
T Consensus       304 lltip~afqiek~frne----qa~~~lp~qtakln~~~gi~yv~~~~~ahqlpa~~l~k  358 (359)
T KOG4581|consen  304 LLTIPMAFQIEKQFRNE----QAFHKLPQQTAKLNFFFGIFYVFACCCAHQLPAFGLPK  358 (359)
T ss_pred             HhhchhHHhHHHHhhhH----hhhhhcchhhhhHHHHHHHHHHHHHHHhccCCcCCCCC
Confidence            99999999988888643    35777788999999999999999998875444444444

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.48  E-value=1.3e-13  Score=118.70  Aligned_cols=89  Identities=17%  Similarity=0.124  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHH----HhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q 031079           29 LSASLLVGLTTSLIL----FCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCA  104 (166)
Q Consensus        29 ll~sl~~Gll~~aIL----~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l~l  104 (166)
                      +..++++++.+..++    .+||+||+|+||++||||+||++|+++|++++..+.+++|+++++++..|..|+... +.+
T Consensus       178 ~~~~~~i~l~~~~~l~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~-~~~  256 (307)
T PRK13591        178 LIPVGLIFLFFGVKLFINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPI-ILL  256 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch-hhH
Confidence            455667778876666    899999999999999999999999999999999999999999999999898876554 444


Q ss_pred             hhHHhHHHHHHHHH
Q 031079          105 MTSPIGKLVVSYVE  118 (166)
Q Consensus       105 l~lPla~~~~~~~~  118 (166)
                      -+++.-+-.++...
T Consensus       257 ~s~~~~l~~~~~~~  270 (307)
T PRK13591        257 YSFVCGLICIQVYS  270 (307)
T ss_pred             HHHHHHHHHHHHHc
Confidence            45555444444443

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.45  E-value=1.5e-12  Score=110.14  Aligned_cols=124  Identities=10%  Similarity=0.060  Sum_probs=89.8

Q ss_pred             eeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Q 031079           22 LSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIF  101 (166)
Q Consensus        22 ~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~  101 (166)
                      .++++++++.++++.+++.+...+|+++|+|+|+++|+||+||++|++++.+.+.......+.+.+..+..|..+++.+ 
T Consensus       161 g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~-  239 (285)
T PRK12847        161 NQLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSLHNIFYL-  239 (285)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH-
Confidence            3578899999999999999999999999999999999999999999999999998888888888877777776555543 


Q ss_pred             HHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079          102 LCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITA  152 (166)
Q Consensus       102 l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~  152 (166)
                      ...+..-.........  ..+++++..+..    +....++.++.+|++++
T Consensus       240 ~~~~~~~~l~~~~~~~--~~~~~~~~~~~f----~~~~~~~~l~~~~~~~~  284 (285)
T PRK12847        240 AILAAAGIFYYQYKLL--DFDNPANCMYAF----KANHYVGLLLFLGAVLG  284 (285)
T ss_pred             HHHHHHHHHHHHHHHh--CCCCHHHHHHHH----HHhHHHHHHHHHHHHhC
Confidence            2222221111122222  223344444333    33467788887777764

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=99.40  E-value=1.9e-12  Score=111.30  Aligned_cols=76  Identities=25%  Similarity=0.293  Sum_probs=68.3

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHH
Q 031079           23 SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLS   98 (166)
Q Consensus        23 ~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~   98 (166)
                      .++.++++.++++.+++.++...||++|+|+||+.||||+||++|++++.+++..++..+|+..+.....+..++.
T Consensus       179 ~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~~  254 (308)
T PRK12887        179 LIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVN  254 (308)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            5678889999999999999999999999999999999999999999999999999999999988877665544433

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=99.38  E-value=1.5e-11  Score=104.69  Aligned_cols=127  Identities=17%  Similarity=0.150  Sum_probs=84.1

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 031079           23 SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFL  102 (166)
Q Consensus        23 ~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l  102 (166)
                      +++++.++.++++++++.....+|+++|+|.|+++|+||+|+++|++++++.+..+...++++.......+...++-+ +
T Consensus       156 ~~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~y~-~  234 (284)
T PRK12888        156 TWSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGALWW-I  234 (284)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH-H
Confidence            568899999999999999999999999999999999999999999999998777666666555444333332222222 2


Q ss_pred             H-HhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031079          103 C-AMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARIL  155 (166)
Q Consensus       103 ~-ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~~~  155 (166)
                      + .++....  .++...-..+++++.+..-.   +.+...|+++.+|++++.++
T Consensus       235 ~~~~~~~~l--~~~~~~~~~~~~~~~~~~ff---~~n~~ig~~~~~~~~~~~~~  283 (284)
T PRK12888        235 GLAITAGAF--AYEHAIVSPTDLSRVNRAFF---TANGFVGIALFGFALLDLLV  283 (284)
T ss_pred             HHHHHHHHH--HHHHHHcCccCHHHHHHHHH---HHhhHHHHHHHHHHHHHHHh
Confidence            2 1222222  22222112234555553321   22345788888888887654

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=99.36  E-value=1.8e-11  Score=102.75  Aligned_cols=115  Identities=17%  Similarity=0.075  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHh
Q 031079           26 ATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAM  105 (166)
Q Consensus        26 ~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l~ll  105 (166)
                      +.+++.+..+.+++.....+||+||+|+||++|+||+||++|++++++.+..+...++++.......|..+++-+...++
T Consensus       155 ~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~  234 (279)
T PRK12884        155 EAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIFNILYLAPVLV  234 (279)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            36778888888888888999999999999999999999999999999999888888887666655555444443313334


Q ss_pred             hHHhHHHH-HHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHH
Q 031079          106 TSPIGKLV-VSYVEENHKDKGKIFMAKYYCVRFHALFGAALVA  147 (166)
Q Consensus       106 ~lPla~~~-~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~l  147 (166)
                      +.+..+.. ++..+ . +++++...     .+....++.++++
T Consensus       235 ~~~~~l~~~~~~~~-~-~~~~~~~~-----~~~~~~~~~~~~~  270 (279)
T PRK12884        235 ADLIFLYSAYSLLR-S-QDRETIRK-----VRKITLTAMLLAL  270 (279)
T ss_pred             HHHHHHHHHHHHhc-C-CCHHHHHH-----HHHHHHHHHHHHH
Confidence            44444433 34443 2 22333222     2444555555553

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=99.35  E-value=1.6e-11  Score=103.70  Aligned_cols=124  Identities=16%  Similarity=0.150  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHh
Q 031079           26 ATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAM  105 (166)
Q Consensus        26 ~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l~ll  105 (166)
                      +..++.++++.+++.+...+|++||+|+|+++|+||+||++|++++++.+..+..+++++.......+...++.+....+
T Consensus       158 ~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~y~~~~~~  237 (282)
T TIGR01475       158 LVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGYIALLALIL  237 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence            77888999999999999999999999999999999999999999999998887777776655444333222222201222


Q ss_pred             hHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079          106 TSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI  154 (166)
Q Consensus       106 ~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~~  154 (166)
                      .........+..+ . +++++...   .--..+...++++.+|++++++
T Consensus       238 ~~~~l~~~~~~~~-~-~~~~~~~~---~ff~~~~~l~~~~~~g~~~~~~  281 (282)
T TIGR01475       238 IGLILAYEHYIVD-P-GDQSKIQR---AFFYANGFLSITFLIGVIIDVL  281 (282)
T ss_pred             HHHHHHHHHHHcC-C-CCHHHHHH---HHHHHhHHHHHHHHHHHHHHHh
Confidence            2233333344332 1 22332222   1122345677888888887654

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=99.34  E-value=1.1e-11  Score=107.64  Aligned_cols=65  Identities=20%  Similarity=0.272  Sum_probs=55.0

Q ss_pred             eeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHH
Q 031079           22 LSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLL   86 (166)
Q Consensus        22 ~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~   86 (166)
                      .++++++++.+++.++++.+...+||++|+|+|++.|+||+||++|++++.++-......+.++.
T Consensus       176 g~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~  240 (331)
T PRK12392        176 SDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVF  240 (331)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHH
Confidence            35778889999999999999999999999999999999999999999999876555543444433

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.25  E-value=1.1e-10  Score=99.46  Aligned_cols=60  Identities=18%  Similarity=0.106  Sum_probs=49.1

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHH
Q 031079           23 SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYS   84 (166)
Q Consensus        23 ~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~   84 (166)
                      ++++..+.++  .+++++++...||+||+|+|+++||||+||++|+++++++...+..++.+
T Consensus       164 ~~~~~~l~~a--~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~  223 (282)
T PRK12875        164 SLPPLLAVAG--GWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAA  223 (282)
T ss_pred             CCcHHHHHHH--HHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHH
Confidence            3455554444  57999999999999999999999999999999999999877766555543

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=99.23  E-value=1.8e-10  Score=97.51  Aligned_cols=124  Identities=15%  Similarity=0.091  Sum_probs=78.3

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 031079           23 SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFL  102 (166)
Q Consensus        23 ~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l  102 (166)
                      ++++..++..+...+++..-..+|+++|+|+|+++|+||+||++|+++++..........+.+.+.....+..+++.. .
T Consensus       157 ~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-~  235 (281)
T TIGR01474       157 DLSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLLALAGLIAGLGPVYYL-G  235 (281)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH-H
Confidence            577888888888999999999999999999999999999999999998876655444444444444333333333322 2


Q ss_pred             HHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079          103 CAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITAR  153 (166)
Q Consensus       103 ~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~  153 (166)
                      ..+...........++  .+++++.+    +.-+....++.++.+|++++.
T Consensus       236 ~~~~~~~~~~~~~~~~--~~~~~~~~----~~F~~~~~~~~~l~~~~~~~~  280 (281)
T TIGR01474       236 LAAAALLLIRQIATLD--IRDPENCL----KLFKANNYVGLLLFAGIALGW  280 (281)
T ss_pred             HHHHHHHHHHHHHHhC--CCCHHHHH----HHHHHhhHHHHHHHHHHHHHh
Confidence            2222222222233332  12333322    333445677777777777653

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.23  E-value=2.2e-10  Score=98.83  Aligned_cols=125  Identities=14%  Similarity=0.056  Sum_probs=82.9

Q ss_pred             eeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Q 031079           22 LSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIF  101 (166)
Q Consensus        22 ~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~  101 (166)
                      .+++++.++..+..-++...--.++|+||+|+|+++|+||+||++|++++++.+.......+.+.+.....+ .+++.+ 
T Consensus       188 g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~-  265 (314)
T PRK12878        188 GSLSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLLMGLAFWLAG-VPLLAL-  265 (314)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHHHHHHHHHhc-CcHHHH-
Confidence            356777777777676777777777899999999999999999999999999988666666655555444445 355555 


Q ss_pred             HHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079          102 LCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITAR  153 (166)
Q Consensus       102 l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~  153 (166)
                      ++.+..+.. ..++..+-..++++.    -++.-+.+..++.++.+|++++.
T Consensus       266 ~~~~~~~~~-l~~~~~~~~~~~~~~----~~~~F~~n~~~~~ll~~~l~~~~  312 (314)
T PRK12878        266 LGLLAAAAH-LAWQIARLDIDDPDQ----CLRLFKSNRDAGLLIFLGLVVGG  312 (314)
T ss_pred             HHHHHHHHH-HHHHHHHcccCChHH----HHHHHHHhHHHHHHHHHHHHHHh
Confidence            555554443 223322211222222    12444556788888888888764

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=99.20  E-value=3.1e-10  Score=96.10  Aligned_cols=124  Identities=15%  Similarity=0.011  Sum_probs=78.4

Q ss_pred             eeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Q 031079           22 LSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIF  101 (166)
Q Consensus        22 ~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~  101 (166)
                      .++++++++.+++..+++.....+|++||+|+|+++|+||+||++|++++...........+.+.......+..+++.. 
T Consensus       158 ~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-  236 (282)
T PRK12848        158 GSVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLALLAWAGWLLGLGWAYYW-  236 (282)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH-
Confidence            3577889999999999999999999999999999999999999999998877654433333333333334443333322 


Q ss_pred             HHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079          102 LCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITA  152 (166)
Q Consensus       102 l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~  152 (166)
                      ...+.........+..+  .+++++.....+.    +...|.++.+|++++
T Consensus       237 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~F~~----n~~~g~~l~~~~~~~  281 (282)
T PRK12848        237 GLLVAAALFVYQQKLIR--DREREACFKAFLN----NNWVGLVLFAGIAAS  281 (282)
T ss_pred             HHHHHHHHHHHHHHHcC--CCCHHHHHHHHHh----CcHHHHHHHHHHHHh
Confidence            22222222222233221  1234444433333    345777777777654

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.20  E-value=3.3e-10  Score=95.35  Aligned_cols=56  Identities=16%  Similarity=0.119  Sum_probs=44.9

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHH
Q 031079           23 SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAV   79 (166)
Q Consensus        23 ~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll   79 (166)
                      .+++..+++.. ..++..++..+||+||+|+||++|+||+||++|++++++......
T Consensus       152 ~~~~~~~~~~~-~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~  207 (277)
T PRK12883        152 RIGLAGYLAIC-AFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFG  207 (277)
T ss_pred             cccHHHHHHHH-HHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHH
Confidence            34555555443 566667888999999999999999999999999999998775543

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.19  E-value=1.5e-10  Score=94.20  Aligned_cols=50  Identities=22%  Similarity=0.357  Sum_probs=47.7

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHH
Q 031079           24 ITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSV   73 (166)
Q Consensus        24 ~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~   73 (166)
                      .+...++.+...++++.++...||+||+|+|+++||||+++++|+++++.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  144 PPPPPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence            37889999999999999999999999999999999999999999999987

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.19  E-value=4.8e-10  Score=96.06  Aligned_cols=66  Identities=20%  Similarity=0.027  Sum_probs=57.1

Q ss_pred             eeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHH
Q 031079           22 LSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLF   87 (166)
Q Consensus        22 ~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~   87 (166)
                      .++++.+++.+++.++++.+...+||+||+|+|+++|+||+||++|++++++....+..+.+...+
T Consensus       171 g~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~  236 (297)
T PRK12871        171 GQPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAI  236 (297)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHH
Confidence            467888899999999999999999999999999999999999999999999777666555554433

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=99.17  E-value=9.3e-10  Score=93.89  Aligned_cols=72  Identities=21%  Similarity=0.252  Sum_probs=60.6

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcc
Q 031079           23 SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRA   94 (166)
Q Consensus        23 ~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~   94 (166)
                      +++++.++.++++++++..--..|+++|+|+|+++|+||+||++|++++++.........+.+.+.....+.
T Consensus       159 ~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (291)
T PRK12886        159 TIELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAG  230 (291)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            567889999999999999987889999999999999999999999999998887776666665555554443

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.16  E-value=6.1e-10  Score=94.92  Aligned_cols=129  Identities=12%  Similarity=-0.043  Sum_probs=80.9

Q ss_pred             eeeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Q 031079           21 CLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCI  100 (166)
Q Consensus        21 ~~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l  100 (166)
                      ..++++++++.++++.+++.+--.+|+++|+|.|+++|.||+|+++|++.+..+..........+.......|..+++..
T Consensus       161 ~g~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~  240 (290)
T PRK12870        161 TGHLDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALTVGFLAILGVLLELHLPFWI  240 (290)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            34677888999999999999999999999999999999999999999998886655333333333333344443333322


Q ss_pred             HHHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079          101 FLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI  154 (166)
Q Consensus       101 ~l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~~  154 (166)
                       ...+...........+++..++ ++...   ..-+.+..+|.++.+|++++.+
T Consensus       241 -~~~~~~~~l~~~~~~~~~~~~~-~~~~~---~~F~~n~~~g~~~~~~~~~~~~  289 (290)
T PRK12870        241 -GLAIAAVLWARQYRRLRQANLP-PLAYG---QLFLQNVWIGFLLLAGMILGSL  289 (290)
T ss_pred             -HHHHHHHHHHHHHHHhcccCCC-hHHHH---HHHHHhhHHHHHHHHHHHHHhh
Confidence             2222222222222333222122 22222   2223456788888888887654

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=99.11  E-value=1.6e-09  Score=91.60  Aligned_cols=63  Identities=14%  Similarity=0.091  Sum_probs=55.4

Q ss_pred             eeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHH
Q 031079           22 LSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYS   84 (166)
Q Consensus        22 ~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~   84 (166)
                      .+++++.++.++++++++.+.+++|+++|+|+|+++|+||+||+.|++++++....+..+...
T Consensus       155 g~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~  217 (279)
T PRK12869        155 GSLDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIP  217 (279)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHH
Confidence            367889999999999999999999999999999999999999999999999877655544333

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=99.10  E-value=2.9e-09  Score=90.93  Aligned_cols=126  Identities=13%  Similarity=0.062  Sum_probs=77.7

Q ss_pred             eehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 031079           23 SITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFL  102 (166)
Q Consensus        23 ~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l  102 (166)
                      .++++.++.++++.+++.....+|++||+|.|+++|+||+||++|++++++........+.++...........++.+ +
T Consensus       164 ~~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  242 (291)
T PRK12874        164 EIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHLGLFAY-L  242 (291)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcchHHHH-H
Confidence            567778888999999999999999999999999999999999999999987654444433333222221111222222 2


Q ss_pred             H-HhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031079          103 C-AMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARIL  155 (166)
Q Consensus       103 ~-ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~~~  155 (166)
                      + .+.........+..+  .++++ ......   ......|+++.++++++.++
T Consensus       243 ~~~~~~~~l~~~~~~~~--~~~~~-~~~~ff---~sn~~l~~l~~~~~~~~~~~  290 (291)
T PRK12874        243 GVIVSALILLYEHYLVR--KDFKK-IDKAFF---TLNGYLGIVFFIFIVLDVLF  290 (291)
T ss_pred             HHHHHHHHHHHHHHHhc--CCChH-HHHHHH---HHHHHHHHHHHHHHHHHHhh
Confidence            2 222222333333332  12222 222222   22455778888888877654

>PLN02878 homogentisate phytyltransferase

Probab=99.04  E-value=5.2e-09  Score=89.26  Aligned_cols=65  Identities=25%  Similarity=0.281  Sum_probs=56.1

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHH
Q 031079           24 ITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFA   88 (166)
Q Consensus        24 ~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~   88 (166)
                      .+...+.+.+-+.+...++..+|++||+|+||+.|+||+|||+|++++.++...++..+|+..+.
T Consensus       154 ~~~~~~~~~~f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~  218 (280)
T PLN02878        154 FTRPLIFATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAIL  218 (280)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHH
Confidence            44555666656777888999999999999999999999999999999999999999999985443

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=99.00  E-value=7.7e-09  Score=87.20  Aligned_cols=92  Identities=9%  Similarity=0.051  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHH-HHHHh
Q 031079           27 TVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCI-FLCAM  105 (166)
Q Consensus        27 ~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l-~l~ll  105 (166)
                      ..++..+..-+++.+...+|+++|+|+|+++|+||+||++|++++++..........++.......+...++-+ ....+
T Consensus       155 ~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~  234 (279)
T PRK09573        155 RIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLGIFGIYYLIVVIIC  234 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555556666788889999999999999999999999999998887666665555444443332222221 02233


Q ss_pred             hHHhHHHHHHHHH
Q 031079          106 TSPIGKLVVSYVE  118 (166)
Q Consensus       106 ~lPla~~~~~~~~  118 (166)
                      ..+......+..+
T Consensus       235 ~~~~l~~~~~~~~  247 (279)
T PRK09573        235 DILFIIAMLILLK  247 (279)
T ss_pred             hHHHHHHHHHHHc
Confidence            4455555555554

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=98.96  E-value=1.4e-08  Score=85.40  Aligned_cols=62  Identities=18%  Similarity=0.180  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHH
Q 031079           26 ATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLF   87 (166)
Q Consensus        26 ~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~   87 (166)
                      ...++.++...+.+.+...+||+||+|+|+++|+||+||++|+++++++.........++..
T Consensus       157 ~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~  218 (276)
T PRK12882        157 LALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASP  218 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            34566667677777788899999999999999999999999999999877666555544443

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=98.91  E-value=1.7e-08  Score=86.68  Aligned_cols=117  Identities=18%  Similarity=0.102  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHHHHh------cCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHh-cchhHHHHH
Q 031079           29 LSASLLVGLTTSLILFC------SHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLS-RALPLSCIF  101 (166)
Q Consensus        29 ll~sl~~Gll~~aIL~v------NN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~-g~~p~~~l~  101 (166)
                      .+.+.|..+..++++.+      |+++|+|.|+++|.||+|+++| +++++....+..++.++....... +..+++...
T Consensus       174 ~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~lg~~y~~~  252 (300)
T PRK13106        174 VLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGLGPIAIAA  252 (300)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            33445566666667744      9999999999999999999999 889887766666655544433322 222222110


Q ss_pred             HHHhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031079          102 LCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARIL  155 (166)
Q Consensus       102 l~ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~~~  155 (166)
                      +.....-+..+ .+.+.   .+ ++.+...    +.+...|+++.+|++++.++
T Consensus       253 ~~~~~~~l~~~-~~~~~---~~-~~~~~~F----~~n~~ig~~~~~~~~~~~~~  297 (300)
T PRK13106        253 TILHGLIMAYA-YYLAS---KK-GDFGRAF----YYNIYSSIVLGLGIIIDVLL  297 (300)
T ss_pred             HHHHHHHHHHH-HHHhC---Cc-hHHHHHH----HHccHHHHHHHHHHHHHHHH
Confidence            11111112211 12221   11 3333332    44567888888888887764

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=98.87  E-value=4.7e-08  Score=82.49  Aligned_cols=59  Identities=12%  Similarity=-0.045  Sum_probs=48.6

Q ss_pred             eeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHH
Q 031079           22 LSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVM   80 (166)
Q Consensus        22 ~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~   80 (166)
                      .+++++.++.++++.++...-.....++|+|+||++|+||+|+++|+++++..-....+
T Consensus       154 g~~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~  212 (280)
T TIGR01473       154 GSISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTA  212 (280)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHH
Confidence            46778888889988888888776777899999999999999999999988765443333

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=98.85  E-value=7.7e-08  Score=82.09  Aligned_cols=127  Identities=12%  Similarity=0.020  Sum_probs=76.3

Q ss_pred             eeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Q 031079           22 LSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIF  101 (166)
Q Consensus        22 ~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~  101 (166)
                      ..+++++++.+++..++...-..+++++|+|+|+++|.||+|+++|++++++.-...........++....|...++-+.
T Consensus       163 g~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~  242 (296)
T PRK04375        163 GSLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLPVLLGMAGLLYLV  242 (296)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence            35788899999999999999999999999999999999999999999988765443333333333333343432333220


Q ss_pred             HH-HhhHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079          102 LC-AMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI  154 (166)
Q Consensus       102 l~-ll~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~~  154 (166)
                      .. .+.........+..++  ++++......    +....++.++.++++++.+
T Consensus       243 ~~~~~~~~~l~~~~~~~~~--~~~~~~~~~F----~~s~~~~~~i~~~~~~~~~  290 (296)
T PRK04375        243 VALLLGAWFLYYAWRLYRK--DDRKWARKLF----RYSINYLTLLFVALLVDHL  290 (296)
T ss_pred             HHHHHHHHHHHHHHHHhcC--cCHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            11 1222222333344432  2233333222    3334555555566666544

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=98.40  E-value=7.4e-06  Score=69.44  Aligned_cols=72  Identities=19%  Similarity=0.098  Sum_probs=57.9

Q ss_pred             ehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcch
Q 031079           24 ITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRAL   95 (166)
Q Consensus        24 ~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~   95 (166)
                      .+...++..+...+.+.+.=..+.+.|+|.||+.|.||+|+++|++++..+-......+.+...+....+..
T Consensus       165 ~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~  236 (289)
T COG0382         165 LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLLASALLVLLGLLAGLL  236 (289)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            578888899999999999999999999999999999999999999999987766664443344444444433

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=98.37  E-value=7.1e-06  Score=70.17  Aligned_cols=104  Identities=16%  Similarity=0.115  Sum_probs=55.5

Q ss_pred             HHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHH-HhcchhHHHHHHHHhhHHhHHHHHHHHHhh
Q 031079           42 ILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIG-LSRALPLSCIFLCAMTSPIGKLVVSYVEEN  120 (166)
Q Consensus        42 IL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v-~~g~~p~~~l~l~ll~lPla~~~~~~~~~~  120 (166)
                      +.+++  .|+|.||++|.||+|+++|++.+..+ ..+....+.+..... ..+..+++.......+. ....-.+.+  .
T Consensus       184 ~~ya~--~D~e~D~~~Gi~sl~v~~G~~~~~~i-~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~-~l~~~~~~v--~  257 (289)
T PLN02809        184 TIYAH--QDKEDDLKVGVKSTALRFGDDTKLWL-TGFGAASIGGLALSGYNAGLGWPYYAGLAAAAG-HLAWQIQTV--D  257 (289)
T ss_pred             HHHHH--hchhhHHhCCCcccchhhcHHHHHHH-HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-HHHHHHHHc--C
Confidence            44444  59999999999999999999844433 345555555443322 22322222110111111 111112222  1


Q ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031079          121 HKDKGKIFMAKYYCVRFHALFGAALVAGLITARIL  155 (166)
Q Consensus       121 ~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~~~  155 (166)
                      .+++++.+..    -+.+...|+++.+|+++++.+
T Consensus       258 ~~~~~~~~~~----F~~n~~~g~~~~~~~~~~~~~  288 (289)
T PLN02809        258 LSSRADCNRK----FVSNKWFGAIVFAGIVLGKLF  288 (289)
T ss_pred             CCCHHHHHHH----HHhCCHHHHHHHHHHHHHHhh
Confidence            2334544433    233456888888888887654

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=98.37  E-value=8.9e-06  Score=69.62  Aligned_cols=124  Identities=10%  Similarity=0.058  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHh
Q 031079           26 ATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAM  105 (166)
Q Consensus        26 ~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l~ll  105 (166)
                      +.+++..+.+.+++..==.+..+.|+|.|++.|-||+|+++|++.+.++-..+..++.++..........+++ + ++++
T Consensus       159 ~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~y-~-~~~~  236 (286)
T PRK12895        159 LLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIRTLWY-L-AALI  236 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHhhHHH-H-HHHH
Confidence            3445667777777777677889999999999999999999999988755433433333322222221112211 1 2211


Q ss_pred             hHHhHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031079          106 TSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARIL  155 (166)
Q Consensus       106 ~lPla~~~~~~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lglll~~~~  155 (166)
                       .....-.++...-..+++++.+....   +.+...|+++.+|.+++..+
T Consensus       237 -~~~~~l~~q~~~~~~~~~~~~~~~~F---~~N~~ig~~~~~~~~~~~~~  282 (286)
T PRK12895        237 -IIYTLVIYQHLIIDPRNPINKRMSFF---NANSFIGFVFLIGIILSLRF  282 (286)
T ss_pred             -HHHHHHHHHHHHhcCCCHHHHHHHHH---HHcCHHHHHHHHHHHHHhcc
Confidence             11111112211111233444433222   23456788888888887654

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=98.18  E-value=5e-05  Score=65.59  Aligned_cols=35  Identities=20%  Similarity=0.297  Sum_probs=27.9

Q ss_pred             CCCCchhhHhcCCcccceecCcccHHHHHHHHHHH
Q 031079           47 HFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMI   81 (166)
Q Consensus        47 N~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~   81 (166)
                      -..|+|.||+.|.||+|+++|++.+...-..+..+
T Consensus       193 a~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l  227 (300)
T PRK12876        193 AIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIA  227 (300)
T ss_pred             HHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHH
Confidence            39999999999999999999999885444333333

>PRK13595 ubiA prenyltransferase; Provisional

Probab=98.10  E-value=6e-05  Score=64.91  Aligned_cols=105  Identities=10%  Similarity=-0.016  Sum_probs=62.8

Q ss_pred             HHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhhHHhHHHHHH
Q 031079           36 GLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVS  115 (166)
Q Consensus        36 Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~~~~v~~g~~p~~~l~l~ll~lPla~~~~~  115 (166)
                      .+.+.+-=..-.+.|+|.||+.|.||+|+++|++++.++-..+.+++-++.   ...   ++... +. +.+|......+
T Consensus       179 ~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~---~~~---~~~~~-~~-~~~~~~~~~~~  250 (292)
T PRK13595        179 MAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALL---WPV---SRLTA-LA-LWLICGGMALA  250 (292)
T ss_pred             HHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHH---HHh---cchHH-HH-HHHHHHHHHHH
Confidence            344455555677899999999999999999999999877555444442221   221   22222 22 44454544445


Q ss_pred             HHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031079          116 YVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLI  150 (166)
Q Consensus       116 ~~~~~~~~~~~l~~~l~~t~~~~ll~glLl~lgll  150 (166)
                       +++ .+++|+-+...+.-.-+..+.|.+.+.-++
T Consensus       251 -~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  283 (292)
T PRK13595        251 -LWR-RPTPETAHRLYPLSIVTPWIVGTVAGVLLV  283 (292)
T ss_pred             -Hhc-CCCHHHHhccchHHHHHhHHHHHHHHHHHH
Confidence             443 345677777666655556666655444333

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=98.03  E-value=0.00017  Score=62.14  Aligned_cols=53  Identities=13%  Similarity=0.030  Sum_probs=45.8

Q ss_pred             eeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHH
Q 031079           22 LSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVV   74 (166)
Q Consensus        22 ~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~l   74 (166)
                      .++++..++....+.++...=..+-.+.|+|+|+++|.||+||+.|++++++.
T Consensus       166 g~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~  218 (306)
T PRK13362        166 GQFDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLH  218 (306)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHH
Confidence            35678888888888888888777778889999999999999999999988864

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=97.58  E-value=0.0014  Score=56.38  Aligned_cols=41  Identities=20%  Similarity=0.075  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcccHHHH
Q 031079           33 LLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTERGSVV   74 (166)
Q Consensus        33 l~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~l   74 (166)
                      +.+-+++..==.+=-+.|+|.|+++|-|++|++.|+ ++...
T Consensus       177 ~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~-~~~~~  217 (294)
T PRK12873        177 LATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGS-NALKT  217 (294)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcCh-hhHHH
Confidence            444444433212334559999999999999999997 44443

>PRK13592 ubiA prenyltransferase; Provisional

Probab=96.61  E-value=0.071  Score=46.24  Aligned_cols=41  Identities=7%  Similarity=0.128  Sum_probs=32.3

Q ss_pred             HhcCCCCchhhHhcCCcccceecCcccHHHHHHHHHHHHHHHH
Q 031079           44 FCSHFHQVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLL   86 (166)
Q Consensus        44 ~vNN~RDie~Dr~aGKrTLaVrLG~~~A~~ly~~ll~~ay~~~   86 (166)
                      .+-.+|| |+|++ |-+|+|+++|.++|.++-..+.+++.+..
T Consensus       193 I~KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~~s  233 (299)
T PRK13592        193 VCRKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDILTN  233 (299)
T ss_pred             HHHhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHHHh
Confidence            4678999 87775 68999999999999988777766665543

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=95.55  E-value=0.49  Score=40.03  Aligned_cols=39  Identities=21%  Similarity=-0.012  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCC---cccce
Q 031079           26 ATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGK---MSPLV   64 (166)
Q Consensus        26 ~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGK---rTLaV   64 (166)
                      +..++..+...+..++....|++.|+|-||+.-+   |-+|-
T Consensus        47 ~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~s   88 (289)
T COG0382          47 KLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPS   88 (289)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCC
Confidence            4677778888888999999999999999998766   44544

>PLN02776 prenyltransferase

Probab=94.88  E-value=1  Score=39.70  Aligned_cols=56  Identities=7%  Similarity=-0.042  Sum_probs=36.8

Q ss_pred             eeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCccccee--cCcccHHHHHHH
Q 031079           22 LSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVR--LGTERGSVVVKW   77 (166)
Q Consensus        22 ~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVr--LG~~~A~~ly~~   77 (166)
                      .++++++++....+-++...==+.==+.|.|+|+++|.+.++|-  .|++.++.....
T Consensus       147 g~~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~  204 (341)
T PLN02776        147 GQLDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRN  204 (341)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHH
Confidence            46677788777777777652111112457779999999999884  456666655433

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=94.75  E-value=1.4  Score=36.92  Aligned_cols=43  Identities=14%  Similarity=0.033  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCcc
Q 031079           26 ATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGTE   69 (166)
Q Consensus        26 ~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~~   69 (166)
                      +..++..+..-+..++....||+=|+|.|++. |+.=|.-=|+-
T Consensus        37 ~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~i   79 (279)
T PRK12884         37 DEALLGFLTAFFASGSANALNDYFDYEVDRIN-RPDRPIPSGRI   79 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCC
Confidence            44555666666777888899999999999988 66666656653

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=94.50  E-value=0.2  Score=43.02  Aligned_cols=50  Identities=10%  Similarity=-0.091  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHhcCCCCchhhHhcCCcccceecCc---ccHHHHHHHHHHHHH
Q 031079           33 LLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLGT---ERGSVVVKWAVMILY   83 (166)
Q Consensus        33 l~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG~---~~A~~ly~~ll~~ay   83 (166)
                      +...+..++.-..||+-|.|.|++.+++ =++.=|+   +.+......+..++.
T Consensus        61 l~~~l~~~~~n~~NDy~D~d~D~~~~~~-Rpi~~G~is~~~a~~~~~~l~~~~~  113 (306)
T TIGR02056        61 LSGPCLTGYTQTINDFYDRDIDAINEPY-RPIPSGAISEPEVITQIVLLFIAGI  113 (306)
T ss_pred             HHHHHHHHHHHHHHhHhhhhhhccCCCC-CCCCCCccCHHHHHHHHHHHHHHHH
Confidence            3445666778899999999999987643 3333344   444433333333333

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=94.16  E-value=0.39  Score=41.41  Aligned_cols=55  Identities=20%  Similarity=0.167  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchhhHhc-CC--cccc-eecCcccHHHHHHHHHHHH
Q 031079           28 VLSASLLVGLTTSLILFCSHFHQVEGDRNV-GK--MSPL-VRLGTERGSVVVKWAVMIL   82 (166)
Q Consensus        28 ~ll~sl~~Gll~~aIL~vNN~RDie~Dr~a-GK--rTLa-VrLG~~~A~~ly~~ll~~a   82 (166)
                      .+++-+...+.+++.-..||+-|+|.||+. .|  |-+| =++..+.|..+...+..++
T Consensus        48 ~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~  106 (295)
T PRK12324         48 VLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVAS  106 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHH
Confidence            445555556667889999999999999995 22  3332 2344444444433333333

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=94.10  E-value=1.6  Score=37.62  Aligned_cols=43  Identities=14%  Similarity=-0.007  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCC-cccceecCcc
Q 031079           27 TVLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGTE   69 (166)
Q Consensus        27 ~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGK-rTLaVrLG~~   69 (166)
                      ..++..+...+..++-...||+-|+|-|++.-| |.=|.-=|+-
T Consensus        45 ~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~i   88 (294)
T PRK12873         45 LLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKI   88 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCC
Confidence            355677777888899999999999999998776 4555544543

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=94.05  E-value=1.2  Score=37.71  Aligned_cols=45  Identities=11%  Similarity=-0.005  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchhhHhcCC-cccceecCcccHH
Q 031079           28 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGTERGS   72 (166)
Q Consensus        28 ~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGK-rTLaVrLG~~~A~   72 (166)
                      .++..+...+..++....||+-|+|-|++..| ++=|+-=|+-..+
T Consensus        47 ~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~   92 (285)
T PRK12847         47 LVLFIIGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVK   92 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHH
Confidence            45566666778889999999999999987443 2233333543333

>PRK08238 hypothetical protein; Validated

Probab=93.30  E-value=1.3  Score=40.65  Aligned_cols=56  Identities=20%  Similarity=0.147  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhhHhcC-Cccccee---cCcccHHHHHHHHHHHH
Q 031079           27 TVLSASLLVGLTTSLILFCSHFHQVEGDRNVG-KMSPLVR---LGTERGSVVVKWAVMIL   82 (166)
Q Consensus        27 ~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aG-KrTLaVr---LG~~~A~~ly~~ll~~a   82 (166)
                      ..+++.+..++.++++-..||+-|+|.||+.- ||.=|.-   +..+.|..+...++.++
T Consensus       227 ~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~  286 (479)
T PRK08238        227 AALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAG  286 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            45566777888999999999999999999973 3333433   34444444434444444

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=92.97  E-value=2.8  Score=35.25  Aligned_cols=31  Identities=6%  Similarity=-0.052  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhhHhc
Q 031079           27 TVLSASLLVGLTTSLILFCSHFHQVEGDRNV   57 (166)
Q Consensus        27 ~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~a   57 (166)
                      ..++..+...+..++.-..||+-|+|.|++.
T Consensus        37 ~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~   67 (282)
T TIGR01475        37 TLILILIAAVSARTAAMAFNRIIDRAIDARN   67 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence            4567777788888999999999999999987

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=92.90  E-value=4.1  Score=34.24  Aligned_cols=56  Identities=13%  Similarity=0.033  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchhhHhcCC-cccce-ecCcccHHHHHHHHHHHHH
Q 031079           28 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLV-RLGTERGSVVVKWAVMILY   83 (166)
Q Consensus        28 ~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGK-rTLaV-rLG~~~A~~ly~~ll~~ay   83 (166)
                      .++..+...+..++....||+-|+|.|++..+ |.+|- ++-++.|..+...+..++.
T Consensus        39 ~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~   96 (279)
T PRK09573         39 IILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGL   96 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHHHHHHHHHHHHHHHH
Confidence            55666777788899999999999999997543 33322 4445555544444444443

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=92.50  E-value=3.4  Score=34.55  Aligned_cols=32  Identities=13%  Similarity=0.033  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchhhHhcCC
Q 031079           28 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK   59 (166)
Q Consensus        28 ~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGK   59 (166)
                      .+...+..-+..++.-..||+-|+|.|+...+
T Consensus        38 ~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~   69 (285)
T PRK12872         38 SWLLLLITFLIAAAVYIINYLTDLEEDIINKP   69 (285)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCC
Confidence            45566667788888999999999999987544

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=92.29  E-value=5.3  Score=34.21  Aligned_cols=48  Identities=10%  Similarity=-0.116  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchhhHhcCC-cccceecCcccHHHHH
Q 031079           28 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGTERGSVVV   75 (166)
Q Consensus        28 ~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGK-rTLaVrLG~~~A~~ly   75 (166)
                      .++..+..-+..++-...||+=|+|-|++.-| ++-|.-=|+-..+...
T Consensus        47 l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~A~   95 (289)
T PLN02809         47 LALFGCGALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPFQGV   95 (289)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCHHHHH
Confidence            44566666678889999999999999998765 4556656765444333

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=91.96  E-value=2.1  Score=35.90  Aligned_cols=54  Identities=15%  Similarity=-0.115  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCcccceecC---cccHHHHHHHHHHHH
Q 031079           28 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVRLG---TERGSVVVKWAVMIL   82 (166)
Q Consensus        28 ~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVrLG---~~~A~~ly~~ll~~a   82 (166)
                      .++.-+...+..++....||+=|+|.|+... ++=|.-=|   ++.|..+...+.+++
T Consensus        40 ~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l~~~g   96 (276)
T PRK12882         40 TGLAFAAVFLATGAGNAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILLFAAG   96 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHHHHHH
Confidence            4566666777788899999999999999643 44444444   344443333333333

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=91.80  E-value=5  Score=33.93  Aligned_cols=32  Identities=9%  Similarity=-0.095  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchhhHhcCC
Q 031079           28 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK   59 (166)
Q Consensus        28 ~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGK   59 (166)
                      .++..+..-+..++-...||+-|+|-|++..|
T Consensus        42 ~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~R   73 (281)
T TIGR01474        42 LGLFTVGAILMRGAGCVINDIWDRDFDPQVER   73 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhcccccCCc
Confidence            44455555667788889999999999986543

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=91.78  E-value=2.9  Score=35.91  Aligned_cols=31  Identities=6%  Similarity=-0.056  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhhHhc
Q 031079           27 TVLSASLLVGLTTSLILFCSHFHQVEGDRNV   57 (166)
Q Consensus        27 ~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~a   57 (166)
                      ..++..+...+..++-...||+=|+|-|++.
T Consensus        38 ~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~   68 (286)
T PRK12895         38 KILLILIAAVSARTSAMSINRIEGLRYDMIN   68 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhcccCCC
Confidence            3445555666778889999999999999887

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=91.45  E-value=1.1  Score=38.55  Aligned_cols=46  Identities=7%  Similarity=-0.075  Sum_probs=29.0

Q ss_pred             HHHHHHHhcCCCCchhhHhcCCccc-c-eecCcccHHHHHHHHHHHHH
Q 031079           38 TTSLILFCSHFHQVEGDRNVGKMSP-L-VRLGTERGSVVVKWAVMILY   83 (166)
Q Consensus        38 l~~aIL~vNN~RDie~Dr~aGKrTL-a-VrLG~~~A~~ly~~ll~~ay   83 (166)
                      ..++.-..||+-|.|.|++.+++-. + =++.++.+..+...+..++.
T Consensus        77 ~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~  124 (314)
T PRK07566         77 LCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGL  124 (314)
T ss_pred             HHHHHHHHhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHH
Confidence            4577889999999999997654322 2 14455555555544444443

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=91.30  E-value=3.8  Score=32.95  Aligned_cols=35  Identities=17%  Similarity=0.167  Sum_probs=24.0

Q ss_pred             eehHHHH-HHHHHHHHHHHHHHHhcCCCCchhhHhc
Q 031079           23 SITATVL-SASLLVGLTTSLILFCSHFHQVEGDRNV   57 (166)
Q Consensus        23 ~~~~~~l-l~sl~~Gll~~aIL~vNN~RDie~Dr~a   57 (166)
                      ..++..+ ...+.+-+...++-..|++-|.|.|+..
T Consensus        19 ~~~~~~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~   54 (257)
T PF01040_consen   19 PFNWPIFLLGLLAVFLLQLAVYLLNDYFDYEEDRIH   54 (257)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhChhhhhcCccc
Confidence            3444333 3333334667788888999999999995

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=91.18  E-value=2.4  Score=36.57  Aligned_cols=25  Identities=20%  Similarity=0.121  Sum_probs=17.9

Q ss_pred             HHhcCCCCchhhHhcCCcccceecCc
Q 031079           43 LFCSHFHQVEGDRNVGKMSPLVRLGT   68 (166)
Q Consensus        43 L~vNN~RDie~Dr~aGKrTLaVrLG~   68 (166)
                      .-.||+-|+|.|+.. |++.|+-=|+
T Consensus        70 ~~iNd~~D~~iD~in-kp~rPiasG~   94 (308)
T PRK12887         70 VGLNQLTDIEIDRIN-KPHLPLAAGE   94 (308)
T ss_pred             HHHhhhhhHHHHhcC-CCCCCcCCcc
Confidence            448999999999964 5666653343

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=89.99  E-value=11  Score=31.87  Aligned_cols=29  Identities=17%  Similarity=-0.011  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCchhhHhcC
Q 031079           30 SASLLVGLTTSLILFCSHFHQVEGDRNVG   58 (166)
Q Consensus        30 l~sl~~Gll~~aIL~vNN~RDie~Dr~aG   58 (166)
                      +..+..-+..++-...||+-|+|-|++..
T Consensus        46 l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~   74 (282)
T PRK12848         46 VFVLGVFLMRAAGCVINDYADRDFDGHVK   74 (282)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHhccCCCCC
Confidence            33344446678889999999999998544

>PLN02776 prenyltransferase

Probab=89.87  E-value=9.3  Score=33.78  Aligned_cols=33  Identities=9%  Similarity=-0.023  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCC
Q 031079           27 TVLSASLLVGLTTSLILFCSHFHQVEGDRNVGK   59 (166)
Q Consensus        27 ~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGK   59 (166)
                      ..++..+...+..++=...||+-|+|-|++.-|
T Consensus        30 ~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~R   62 (341)
T PLN02776         30 GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKR   62 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCC
Confidence            355667778888899999999999999987543

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=89.54  E-value=11  Score=32.19  Aligned_cols=32  Identities=6%  Similarity=-0.145  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhhHhcC
Q 031079           27 TVLSASLLVGLTTSLILFCSHFHQVEGDRNVG   58 (166)
Q Consensus        27 ~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aG   58 (166)
                      ..++..+..-+..++-...||+-|+|-|++.-
T Consensus        43 ~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~   74 (291)
T PRK12886         43 QLDWILMAMVGARTAAMGFNRLIDAEIDARNP   74 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCC
Confidence            35566677777778888899999999998764

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=89.20  E-value=6.5  Score=33.21  Aligned_cols=47  Identities=11%  Similarity=0.018  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchhhHhcCC---cccce-ecCcccHHHH
Q 031079           28 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK---MSPLV-RLGTERGSVV   74 (166)
Q Consensus        28 ~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGK---rTLaV-rLG~~~A~~l   74 (166)
                      .++..+...+..++-...||+-|+|-|++.-|   |.+|- |+.++.|..+
T Consensus        38 ~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~   88 (279)
T PRK12869         38 LIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAV   88 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHH
Confidence            44556666677889999999999999998543   44432 3344444433

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=88.85  E-value=3.9  Score=34.30  Aligned_cols=47  Identities=13%  Similarity=-0.057  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHhcCCCCchhhHhcCCccccee---cCcccHHHHHHHHHH
Q 031079           33 LLVGLTTSLILFCSHFHQVEGDRNVGKMSPLVR---LGTERGSVVVKWAVM   80 (166)
Q Consensus        33 l~~Gll~~aIL~vNN~RDie~Dr~aGKrTLaVr---LG~~~A~~ly~~ll~   80 (166)
                      +..-+..++.-..||+-|+|.|+... ++=|+-   +-++.|......+..
T Consensus        44 ~~~~~~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~~   93 (277)
T PRK12883         44 LVVYLGCSGGNTINDYFDYEIDKINR-PNRPLPRGAMSRKAALYYSLLLFA   93 (277)
T ss_pred             HHHHHHHHHHhHHHhhhhHhccccCC-CCCCCCCCccCHHHHHHHHHHHHH
Confidence            33334447788999999999999754 333333   444455444433333

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=88.80  E-value=13  Score=31.19  Aligned_cols=54  Identities=9%  Similarity=0.043  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchhhHhcC---Ccccce-ecCcccHHHHHHHHHHH
Q 031079           28 VLSASLLVGLTTSLILFCSHFHQVEGDRNVG---KMSPLV-RLGTERGSVVVKWAVMI   81 (166)
Q Consensus        28 ~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aG---KrTLaV-rLG~~~A~~ly~~ll~~   81 (166)
                      .++..+..-+..++....||+-|+|-|++.-   +|.+|- ++-++.|..+...+..+
T Consensus        37 ~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~   94 (280)
T TIGR01473        37 LLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVL   94 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence            4556666667789999999999999999743   243332 33444444443333333

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=88.05  E-value=15  Score=31.72  Aligned_cols=32  Identities=6%  Similarity=-0.206  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCchhhHhc
Q 031079           26 ATVLSASLLVGLTTSLILFCSHFHQVEGDRNV   57 (166)
Q Consensus        26 ~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~a   57 (166)
                      +..++..+..-+..++-...||+-|+|-|++.
T Consensus        72 ~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~  103 (314)
T PRK12878         72 WHLFLFFVGAIAMRGAGCTYNDIVDRDIDAKV  103 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            34556666666778888999999999999864

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=87.71  E-value=3.5  Score=34.64  Aligned_cols=47  Identities=9%  Similarity=-0.079  Sum_probs=28.0

Q ss_pred             HHHHHHHHHhcCCCCchhhHhcCCcccce--ecCcccHHHHHHHHHHHH
Q 031079           36 GLTTSLILFCSHFHQVEGDRNVGKMSPLV--RLGTERGSVVVKWAVMIL   82 (166)
Q Consensus        36 Gll~~aIL~vNN~RDie~Dr~aGKrTLaV--rLG~~~A~~ly~~ll~~a   82 (166)
                      -+..++.-.+||+-|.|.|++.+++-...  ++-++.++.+...+..++
T Consensus        48 ~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~is~~~a~~~~~~~~~~~   96 (283)
T TIGR01476        48 PLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAG   96 (283)
T ss_pred             HHHHHHHHHHHhHhhhCcccCCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence            34556677899999999999876433222  233444444444433333

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=87.48  E-value=4.2  Score=34.72  Aligned_cols=19  Identities=11%  Similarity=-0.025  Sum_probs=15.8

Q ss_pred             HhcCCCCchhhHhcCCccc
Q 031079           44 FCSHFHQVEGDRNVGKMSP   62 (166)
Q Consensus        44 ~vNN~RDie~Dr~aGKrTL   62 (166)
                      .+||+-|+|.||+.-||..
T Consensus        63 ~iND~~D~D~Dr~~prk~~   81 (282)
T PRK12875         63 GVNDVFDADTDELNPKKDR   81 (282)
T ss_pred             cchhhhhhhccccCCCccC
Confidence            3799999999998777753

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=87.17  E-value=19  Score=31.09  Aligned_cols=30  Identities=10%  Similarity=0.011  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchhhHhc
Q 031079           28 VLSASLLVGLTTSLILFCSHFHQVEGDRNV   57 (166)
Q Consensus        28 ~ll~sl~~Gll~~aIL~vNN~RDie~Dr~a   57 (166)
                      .++..+...+..++-...||+=|+|-|++.
T Consensus        51 l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~   80 (300)
T PRK13106         51 LILIFLALFFLRTAGMTNDNLADLEIDAKN   80 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhccccCC
Confidence            456667777888888999999999999876

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=87.13  E-value=4.1  Score=35.67  Aligned_cols=46  Identities=15%  Similarity=0.143  Sum_probs=28.6

Q ss_pred             HHHHHHhcCCCCchhhHhcCCcccce---ecCcccHHHHHHHHHHHHHHH
Q 031079           39 TSLILFCSHFHQVEGDRNVGKMSPLV---RLGTERGSVVVKWAVMILYSL   85 (166)
Q Consensus        39 ~~aIL~vNN~RDie~Dr~aGKrTLaV---rLG~~~A~~ly~~ll~~ay~~   85 (166)
                      +++--.+||+=|+|.|+..+ ||=|+   ++-++.+..++..+..++.++
T Consensus        63 ~~a~~~iND~~D~~~D~~n~-rtRpl~~G~is~~~al~~~~~l~~la~~l  111 (331)
T PRK12392         63 TGFSQSVNDYFDLELDRVNE-PTRPIPSGRLSEKEALWNSIIVLLLAIGL  111 (331)
T ss_pred             HHHHhHHhcceeecccccCC-CCCCCCcCCcCHHHHHHHHHHHHHHHHHH
Confidence            34556799999999998754 44433   334555555555555555433

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=87.10  E-value=18  Score=31.39  Aligned_cols=42  Identities=5%  Similarity=-0.049  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchhhHhcCC-cccceecCcc
Q 031079           28 VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK-MSPLVRLGTE   69 (166)
Q Consensus        28 ~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGK-rTLaVrLG~~   69 (166)
                      .++..+.+-+.-++=...||+-|+|-|++.-| +.=|.-=|+=
T Consensus        49 ~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~i   91 (300)
T PRK12876         49 ISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKLL   91 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCCC
Confidence            45777777777888899999999999988764 2333333553

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=86.53  E-value=19  Score=30.69  Aligned_cols=35  Identities=6%  Similarity=0.031  Sum_probs=24.9

Q ss_pred             ehHH-HHHHHHHHHHHHHHHHHhcCCCCchhhHhcC
Q 031079           24 ITAT-VLSASLLVGLTTSLILFCSHFHQVEGDRNVG   58 (166)
Q Consensus        24 ~~~~-~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aG   58 (166)
                      .++. .++..+...+..++-...||+=|+|-|++.-
T Consensus        44 ~~~~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~   79 (291)
T PRK12874         44 FGFKLLILGILAAVSARNFAMAFNRLVDRDIDKDNP   79 (291)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCC
Confidence            3444 3444555556667778899999999998874

>PLN00012 chlorophyll synthetase; Provisional

Probab=86.25  E-value=6.1  Score=35.22  Aligned_cols=29  Identities=14%  Similarity=-0.031  Sum_probs=21.1

Q ss_pred             HHHHH-HHHHHHHHHHhcCCCCchhhHhcC
Q 031079           30 SASLL-VGLTTSLILFCSHFHQVEGDRNVG   58 (166)
Q Consensus        30 l~sl~-~Gll~~aIL~vNN~RDie~Dr~aG   58 (166)
                      ++.+. ..++.++.-.+||+-|.|.|++.+
T Consensus       126 l~~ll~~~L~~~~an~iNDy~D~~iD~~~~  155 (375)
T PLN00012        126 VCMLMSGPFLTGYTQTINDWYDREIDAINE  155 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHCeecHhhhccCC
Confidence            33443 445556688899999999998875

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=85.04  E-value=12  Score=31.79  Aligned_cols=31  Identities=16%  Similarity=-0.068  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchhhHhcC
Q 031079           28 VLSASLLVGLTTSLILFCSHFHQVEGDRNVG   58 (166)
Q Consensus        28 ~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aG   58 (166)
                      .++..+..-+..++-...||+-|+|-|++..
T Consensus        48 ~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~   78 (290)
T PRK12870         48 VGIIILGALATSAAGCVVNDLWDRDIDPQVE   78 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhccCCCCC
Confidence            3444555556788889999999999997643

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=84.88  E-value=23  Score=30.09  Aligned_cols=55  Identities=9%  Similarity=0.012  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchhhHhcC---Ccccc-eecCcccHHHHHHHHHHHH
Q 031079           28 VLSASLLVGLTTSLILFCSHFHQVEGDRNVG---KMSPL-VRLGTERGSVVVKWAVMIL   82 (166)
Q Consensus        28 ~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aG---KrTLa-VrLG~~~A~~ly~~ll~~a   82 (166)
                      .++..+..-+..++-...||+-|+|-|++.-   .|.+| =|+.++.|..+...+..++
T Consensus        46 ~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~g  104 (296)
T PRK04375         46 LLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGVLG  104 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence            4455566667788889999999999999753   23332 2344455544444444333

>PRK13595 ubiA prenyltransferase; Provisional

Probab=84.68  E-value=8.7  Score=33.25  Aligned_cols=30  Identities=17%  Similarity=-0.003  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHhcCCCCchhhHhcCCcc
Q 031079           32 SLLVGLTTSLILFCSHFHQVEGDRNVGKMS   61 (166)
Q Consensus        32 sl~~Gll~~aIL~vNN~RDie~Dr~aGKrT   61 (166)
                      ..-.+.+...+--+|++-|+|.|++.-|+-
T Consensus        53 ~~~~~p~n~~~~giND~fD~eiDa~Npr~~   82 (292)
T PRK13595         53 LYLTLPFNLLIYGLNDLADRETDAASPRKG   82 (292)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhccCCCCC
Confidence            334444455677899999999998776664

>PRK13592 ubiA prenyltransferase; Provisional

Probab=84.57  E-value=11  Score=32.78  Aligned_cols=64  Identities=13%  Similarity=0.087  Sum_probs=40.2

Q ss_pred             eeeehHHHHHHHHHHHHHHHHHHHhcCCCCchhhHhcCCccc--ceecCcccHHHHHHHHHHHHHH
Q 031079           21 CLSITATVLSASLLVGLTTSLILFCSHFHQVEGDRNVGKMSP--LVRLGTERGSVVVKWAVMILYS   84 (166)
Q Consensus        21 ~~~~~~~~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGKrTL--aVrLG~~~A~~ly~~ll~~ay~   84 (166)
                      .+....+.+++.+.+-+.+++-..+|++-|+|-||..--.-.  .=|+-++.|+.+-..+.+.+..
T Consensus        41 ~~~~~~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~  106 (299)
T PRK13592         41 SFRIGIQEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVL  106 (299)
T ss_pred             CCCCchHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Confidence            344555566767766677788899999999999986543222  1244555565444455444444

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=83.70  E-value=28  Score=30.03  Aligned_cols=36  Identities=11%  Similarity=0.092  Sum_probs=26.1

Q ss_pred             ehHH-HHHHHHHHHHHHHHHHHhcCCCCchhhHhcCC
Q 031079           24 ITAT-VLSASLLVGLTTSLILFCSHFHQVEGDRNVGK   59 (166)
Q Consensus        24 ~~~~-~ll~sl~~Gll~~aIL~vNN~RDie~Dr~aGK   59 (166)
                      .++. .++..+...+..++....||+-|+|-|++.-|
T Consensus        44 ~~~~~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~R   80 (306)
T PRK13362         44 VDPVLMLAAVIGLSLVVASGCALNNCIDRDIDAKMQR   80 (306)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCC
Confidence            4443 33444566677889999999999999987543

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=80.19  E-value=9.8  Score=32.69  Aligned_cols=34  Identities=12%  Similarity=0.044  Sum_probs=20.6

Q ss_pred             eehHHHHH-HHHHHHHHHHHHHHhcCCCCchhhHh
Q 031079           23 SITATVLS-ASLLVGLTTSLILFCSHFHQVEGDRN   56 (166)
Q Consensus        23 ~~~~~~ll-~sl~~Gll~~aIL~vNN~RDie~Dr~   56 (166)
                      ..++..++ +.+...+..++--..||+-|+|.|+.
T Consensus        37 ~~~~~~~~l~~l~~~l~~~ag~~iND~~D~~~D~~   71 (297)
T PRK12871         37 GFSWELTIKAALIGLFGFEAGFVLNDYVDRKRDRL   71 (297)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCcc
Confidence            34554333 23333333444458999999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00