Citrus Sinensis ID: 031128

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
Protein Sequence
MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL
Secondary Structure (PSIPRED)
cccccEEEEEEEEEEcccccccccccccEEEEEEccEEEEEEEEccccccEEccEEEEEEEcccccEEEEEEEccccccccccccEEEccHHHHHHHHHHHcccccccEEEEEEccccccccccccEEEEccEEEEEEEEEEcccEEEEEEEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEEEccccccccccccccEEEEEEcccEEEEEEEEcccccccccEEEEEEccccccEEEEEEEccccccccccccEEEcHHHHHHHHHccccccccccEEEEEEcccccccccccEEEEEccEEEEEEEEEEEEccccEEEEEEEEEEccccccc
Coil and Loop (DISEMBL)
MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKnnvnpewnedltlsisdsnlpikltvydkdtfslddkmgdaefYITPFLEALKMRleglpngtivtkiqpsrenclaeeshivwtdgkLVQNLFLRLRnvevgevkiqlewidipgsrgl
Flexible Loop (DISEMBL)
MENLMGLLRVHVLRGVNLavrdvvssdpyvvikmgkqklktrvvknnvnpewnedltlsisdsnlpiKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRnvevgevkiqlewidipgsrgl
Low Complexity Region (SEG)
MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL
Disordered region (IsUnstruct)
***LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDI******
Disordered Region (DISOPRED)
**NLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGS***
Disordered Region (DISEMBL)
MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL
Disordered Region (DISPRO)
*ENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPG****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	165	2.2.26 [Sep-21-2011]
Q8L7A4	385	Probable ADP-ribosylation	no	no	0.939	0.402	0.475	1e-34
Q8LFN9	336	Probable ADP-ribosylation	no	no	0.951	0.467	0.443	6e-32
Q9FVJ3	337	ADP-ribosylation factor G	no	no	0.951	0.465	0.430	7e-31
Q9ZVT9	1020	C2 and GRAM domain-contai	no	no	0.654	0.105	0.330	3e-11
Q9NZM3	1697	Intersectin-2 OS=Homo sap	yes	no	0.624	0.060	0.324	4e-09
Q28BX9	1014	C2 domain-containing prot	no	no	0.539	0.087	0.347	5e-09
Q6DN14	999	Multiple C2 and transmemb	no	no	0.484	0.080	0.382	6e-09
Q7XA06	540	Synaptotagmin-3 OS=Arabid	no	no	0.484	0.148	0.411	6e-09
Q6DN12	878	Multiple C2 and transmemb	no	no	0.484	0.091	0.358	1e-08
Q5RJH2	878	Multiple C2 and transmemb	no	no	0.484	0.091	0.345	2e-08

>sp|Q8L7A4|AGD11_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1

 Score =  145 bits (366), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 78/164 (47%), Positives = 111/164 (67%), Gaps = 9/164 (5%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSI 60
           M   +GL++V+V++G NLAVRDV++SDPYV++ +G+Q +KTRV+KNN+NP WNE L LSI
Sbjct: 224 MVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGQQSVKTRVIKNNLNPVWNETLMLSI 283

Query: 61  SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQ-----P 115
            +   P+K+ VYDKDTFS DD MG+AE  I P + A K         +I   +Q      
Sbjct: 284 PEPMPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVSAAK----AYETSSIKEPMQLGSWVA 339

Query: 116 SRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDI 159
           S+EN L  +  I+  DGK+ Q++ LRL+NVE G ++IQLE + +
Sbjct: 340 SKENTLVSDGIILLEDGKVKQDISLRLQNVERGVLEIQLECLPL 383

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LFN9|AGD13_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1

 Score =  136 bits (342), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 70/158 (44%), Positives = 108/158 (68%), Gaps = 1/158 (0%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSI 60
           M   +GLL+V + +G NLA+RD++SSDPYVV+ +GKQKL+T V+ +N+NP WN++L LS+
Sbjct: 175 MVEFIGLLKVTIKKGTNLAIRDMMSSDPYVVLNLGKQKLQTTVMNSNLNPVWNQELMLSV 234

Query: 61  SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFL-EALKMRLEGLPNGTIVTKIQPSREN 119
            +S  P+KL VYD DTFS DD MG+A+  I P +  A+      +     + K   S +N
Sbjct: 235 PESYGPVKLQVYDYDTFSADDIMGEADIDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDN 294

Query: 120 CLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWI 157
            L ++S I   DGK+ Q + ++L+NVE GE+++++EW+
Sbjct: 295 PLIDDSIINIVDGKVKQEVQIKLQNVESGELELEMEWL 332

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FVJ3|AGD12_ARATH ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1

 Score =  132 bits (333), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 106/158 (67%), Gaps = 1/158 (0%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSI 60
           M   +GLL+V + +G N+A+RD++SSDPYVV+ +G+QK ++ VVK+N+NP WNE+L LS+
Sbjct: 176 MVEFIGLLKVTIKKGTNMAIRDMMSSDPYVVLTLGQQKAQSTVVKSNLNPVWNEELMLSV 235

Query: 61  SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFL-EALKMRLEGLPNGTIVTKIQPSREN 119
             +   +KL V+D DTFS DD MG+AE  I P +  A+      +     + K   S +N
Sbjct: 236 PHNYGSVKLQVFDYDTFSADDIMGEAEIDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDN 295

Query: 120 CLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWI 157
            L E+S I   DGK+ Q + ++L+NVE GE+++++EW+
Sbjct: 296 ALIEDSIINIADGKVKQEVQIKLQNVESGELELEMEWL 333

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF). Binds phosphatidylinositol 3-monophosohate (PI-3-P) and anionic phospholipids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 66/118 (55%), Gaps = 10/118 (8%)

Query: 8   LRVHVLRGVNLAVRDVVS-SDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLP 66
           L+V V+   NL   D+   SDPYV +++GKQ+ +T+VVK N+NP+W ED +  + D N  
Sbjct: 3   LQVRVVEARNLPAMDLNGFSDPYVRLQLGKQRSRTKVVKKNLNPKWTEDFSFGVDDLNDE 62

Query: 67  IKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQP----SRENC 120
           + ++V D+D +  DD +G     ++   +A    L     GT+   + P    S+++C
Sbjct: 63  LVVSVLDEDKYFNDDFVGQVRVSVSLVFDAENQSL-----GTVWYPLNPKKKGSKKDC 115

Arabidopsis thaliana (taxid: 3702)

>sp|Q9NZM3|ITSN2_HUMAN Intersectin-2 OS=Homo sapiens GN=ITSN2 PE=1 SV=3

 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 8/111 (7%)

Query: 5    MGLLRVHVLRGVNL-AVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDS 63
            +G L VHV+    L A +    S+PY  I MG Q   TR +++ +NP+WN +    I D 
Sbjct: 1568 IGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDL 1627

Query: 64   NLPI-KLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKI 113
               +  LT++D+D FS DD +G  E  +       K+R E    G +  ++
Sbjct: 1628 YQDVLCLTLFDRDQFSPDDFLGRTEIPVA------KIRTEQESKGPMTRRL 1672

Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles.

Homo sapiens (taxid: 9606)

>sp|Q28BX9|C2CD5_XENTR C2 domain-containing protein 5 OS=Xenopus tropicalis GN=c2cd5 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 6/95 (6%)

Query: 6  GLLRVHVLRGVNLAVRDVVS--SDPYVVIKMGKQKLKTRVVKNNVNPEWNED-LTLSISD 62
          G L+V ++ G +L V D  S  +D +V +K G    KT V   ++NP+WN +     + D
Sbjct: 3  GKLKVKIVAGRHLPVMDRASDLTDAFVEVKFGNTTFKTDVYHKSLNPQWNSEWFKFEVDD 62

Query: 63 SNL---PIKLTVYDKDTFSLDDKMGDAEFYITPFL 94
           +L   P+++TV D DT+S +D +G     I P L
Sbjct: 63 EDLQDEPLQITVLDHDTYSANDAIGKVYIDIDPLL 97

Xenopus tropicalis (taxid: 8364)

>sp|Q6DN14|MCTP1_HUMAN Multiple C2 and transmembrane domain-containing protein 1 OS=Homo sapiens GN=MCTP1 PE=2 SV=2

 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 5   MGLLRVHVLRGVNLAVRDVVS-SDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDS 63
           +G L+V V+R   L   DV   SDP+ V+++   +L T  V  N+NPEWN+  T +I D 
Sbjct: 625 VGFLQVKVIRAEGLMAADVTGKSDPFCVVELNNDRLLTHTVYKNLNPEWNKVFTFNIKDI 684

Query: 64  NLPIKLTVYDKDTFSLDDKMG 84
           +  +++TVYD+D     D +G
Sbjct: 685 HSVLEVTVYDEDRDRSADFLG 705

Homo sapiens (taxid: 9606)

>sp|Q7XA06|SYT3_ARATH Synaptotagmin-3 OS=Arabidopsis thaliana GN=SYT3 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 5/85 (5%)

Query: 5   MGLLRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQKL---KTRVVKNNVNPEWNEDLTLSI 60
           +GLL V +LR  NL  +D++ +SDPYV + +  +KL   KT + K N+NPEWNE   L +
Sbjct: 260 VGLLHVSILRARNLLKKDLLGTSDPYVKLSLTGEKLPAKKTTIKKRNLNPEWNEHFKLIV 319

Query: 61  SDSNLPI-KLTVYDKDTFSLDDKMG 84
            D N  + +L V+D D     D++G
Sbjct: 320 KDPNSQVLQLEVFDWDKVGGHDRLG 344

May be involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DN12|MCTP2_HUMAN Multiple C2 and transmembrane domain-containing protein 2 OS=Homo sapiens GN=MCTP2 PE=1 SV=3

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 50/81 (61%), Gaps = 1/81 (1%)

Query: 5   MGLLRVHVLRGVNLAVRDVVS-SDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDS 63
           +G+L+V VL+  +L   D    SDP+ ++++G  +L+T  V  N+NPEWN+  T  I D 
Sbjct: 508 VGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI 567

Query: 64  NLPIKLTVYDKDTFSLDDKMG 84
           +  +++TV+D+D     D +G
Sbjct: 568 HDVLEVTVFDEDGDKPPDFLG 588

Homo sapiens (taxid: 9606)

>sp|Q5RJH2|MCTP2_MOUSE Multiple C2 and transmembrane domain-containing protein 2 OS=Mus musculus GN=Mctp2 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 50/81 (61%), Gaps = 1/81 (1%)

Query: 5   MGLLRVHVLRGVNLAVRDVVS-SDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDS 63
           +G+L+V VL+  +L   D    SDP+ ++++G  +L+T  +  N+NPEWN+  T  I D 
Sbjct: 508 VGILQVKVLKASDLLAADFSGKSDPFCLLELGNDRLQTHTIYKNLNPEWNKVFTFPIKDI 567

Query: 64  NLPIKLTVYDKDTFSLDDKMG 84
           +  +++TV+D+D     D +G
Sbjct: 568 HDVLEVTVFDEDGDKAPDFLG 588

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
255586787	169	ARF GTPase activator, putative [Ricinus	1.0	0.976	0.787	4e-75
225456169	181	PREDICTED: probable ADP-ribosylation fac	1.0	0.911	0.793	3e-73
147805778	165	hypothetical protein VITISV_014376 [Viti	1.0	1.0	0.793	4e-73
224077286	165	predicted protein [Populus trichocarpa]	1.0	1.0	0.793	1e-72
356569576	165	PREDICTED: probable ADP-ribosylation fac	1.0	1.0	0.787	3e-72
217071206	165	unknown [Medicago truncatula] gi|3885097	0.987	0.987	0.791	4e-72
225453173	165	PREDICTED: probable ADP-ribosylation fac	1.0	1.0	0.769	7e-72
351724231	165	uncharacterized protein LOC100306214 [Gl	1.0	1.0	0.787	8e-72
449456194	165	PREDICTED: probable ADP-ribosylation fac	1.0	1.0	0.757	5e-71
224069412	165	predicted protein [Populus trichocarpa]	1.0	1.0	0.745	3e-70

>gi|255586787|ref|XP_002534010.1| ARF GTPase activator, putative [Ricinus communis] gi|223525988|gb|EEF28372.1| ARF GTPase activator, putative [Ricinus communis]

 Score =  285 bits (729), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 130/165 (78%), Positives = 155/165 (93%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSI 60
           +E+LMGLLR+HV RGVNLA+RDV++SDPY+V+K+GKQKLKTRVVK N+NPEWNEDLTLSI
Sbjct: 5   IESLMGLLRIHVHRGVNLAIRDVLTSDPYIVVKLGKQKLKTRVVKKNINPEWNEDLTLSI 64

Query: 61  SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 120
           S+ NLP+K+ VYD+DTFS DDKMGDAEF I PFLEALKM L+GLP+GTI+T+IQPSRENC
Sbjct: 65  SNPNLPVKIGVYDRDTFSRDDKMGDAEFDIHPFLEALKMHLQGLPSGTIITRIQPSRENC 124

Query: 121 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 165
           LAEESH++W DGK+VQNLFLRLRNVE GE+++QL+WIDIPGSRGL
Sbjct: 125 LAEESHVLWVDGKVVQNLFLRLRNVECGEIELQLQWIDIPGSRGL 169

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456169|ref|XP_002282569.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11-like [Vitis vinifera]

 Score =  279 bits (713), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 131/165 (79%), Positives = 151/165 (91%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSI 60
           MENL+GLLRV V RG+NLAVRDV SSDPY VIKMGKQKLKTRV+K NVNPEWNEDLTLSI
Sbjct: 17  MENLLGLLRVRVKRGINLAVRDVRSSDPYAVIKMGKQKLKTRVMKKNVNPEWNEDLTLSI 76

Query: 61  SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 120
           SD NLPIKLTVYD DTFS DDKMGDAEF I P+LEAL+M LEGLP+GTI++++QPSR+NC
Sbjct: 77  SDPNLPIKLTVYDHDTFSKDDKMGDAEFTINPYLEALRMHLEGLPSGTIISRVQPSRQNC 136

Query: 121 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 165
           LAEES IVWTDG++VQ++ LRLRNVE GEV++QL+WID+PGS+GL
Sbjct: 137 LAEESCIVWTDGRVVQDICLRLRNVECGEVELQLQWIDLPGSKGL 181

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805778|emb|CAN69475.1| hypothetical protein VITISV_014376 [Vitis vinifera] gi|297734335|emb|CBI15582.3| unnamed protein product [Vitis vinifera]

 Score =  278 bits (712), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 131/165 (79%), Positives = 151/165 (91%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSI 60
           MENL+GLLRV V RG+NLAVRDV SSDPY VIKMGKQKLKTRV+K NVNPEWNEDLTLSI
Sbjct: 1   MENLLGLLRVRVKRGINLAVRDVRSSDPYAVIKMGKQKLKTRVMKKNVNPEWNEDLTLSI 60

Query: 61  SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 120
           SD NLPIKLTVYD DTFS DDKMGDAEF I P+LEAL+M LEGLP+GTI++++QPSR+NC
Sbjct: 61  SDPNLPIKLTVYDHDTFSKDDKMGDAEFTINPYLEALRMHLEGLPSGTIISRVQPSRQNC 120

Query: 121 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 165
           LAEES IVWTDG++VQ++ LRLRNVE GEV++QL+WID+PGS+GL
Sbjct: 121 LAEESCIVWTDGRVVQDICLRLRNVECGEVELQLQWIDLPGSKGL 165

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077286|ref|XP_002305199.1| predicted protein [Populus trichocarpa] gi|118481958|gb|ABK92911.1| unknown [Populus trichocarpa] gi|222848163|gb|EEE85710.1| predicted protein [Populus trichocarpa]

 Score =  277 bits (708), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 131/165 (79%), Positives = 149/165 (90%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSI 60
           MENLMGLLR+HV+RGVNLAVRDV SSDPYVV+KMGKQKLKTRV+K N+NPEWN+DLTLSI
Sbjct: 1   MENLMGLLRIHVIRGVNLAVRDVCSSDPYVVVKMGKQKLKTRVIKQNINPEWNDDLTLSI 60

Query: 61  SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 120
            D  LP+ + VYDKDTFSLDDKMGDAEF I+ F+E +KMRL+ LP+GTI+ KIQPSRENC
Sbjct: 61  VDPKLPVLIRVYDKDTFSLDDKMGDAEFDISQFIEVVKMRLDNLPSGTIIRKIQPSRENC 120

Query: 121 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 165
           LAEES IVW  GKLVQNLFLRL++VE GEV++QLEWIDIPGSRGL
Sbjct: 121 LAEESCIVWATGKLVQNLFLRLKHVETGEVELQLEWIDIPGSRGL 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569576|ref|XP_003552975.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11-like isoform 1 [Glycine max]

 Score =  275 bits (704), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 130/165 (78%), Positives = 149/165 (90%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSI 60
           MENL+GLLR+HV +GVNLA+RDVVSSDPYVVIKMG+QKLKTRVVK N+NPEWN+DLTLSI
Sbjct: 1   MENLLGLLRIHVEKGVNLAIRDVVSSDPYVVIKMGRQKLKTRVVKKNLNPEWNDDLTLSI 60

Query: 61  SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 120
           SD + PI L VYDKDTFS+DDKMGDAEF+I PF+EA+KMRL GLPN TIVTK+ PSR+NC
Sbjct: 61  SDPHAPIHLHVYDKDTFSMDDKMGDAEFFIGPFIEAVKMRLSGLPNNTIVTKVLPSRQNC 120

Query: 121 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 165
           LAEESHI+  DGK+VQN+ LRLRNVE GEV++QL WIDIPGSR L
Sbjct: 121 LAEESHIMLKDGKVVQNMVLRLRNVESGEVELQLHWIDIPGSRHL 165

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071206|gb|ACJ83963.1| unknown [Medicago truncatula] gi|388509716|gb|AFK42924.1| unknown [Medicago truncatula]

 Score =  275 bits (703), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 129/163 (79%), Positives = 145/163 (88%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSI 60
           MENL+GLL++HV RGVNLA+RDVVSSDPYVVIKM KQKLKTRVVK N+NPEWNEDLTLSI
Sbjct: 1   MENLLGLLKIHVQRGVNLAIRDVVSSDPYVVIKMAKQKLKTRVVKKNLNPEWNEDLTLSI 60

Query: 61  SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 120
           SD + PI L VYDKDTFSLDDKMGDAEF I PF EA+KMRL GLPN  IVT++QPSR+NC
Sbjct: 61  SDPHTPIHLYVYDKDTFSLDDKMGDAEFDIGPFFEAVKMRLAGLPNEAIVTRVQPSRQNC 120

Query: 121 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSR 163
           LAEESHIVW DGK+ QN+ LRLRNVE GEV++QL W+DIPGS+
Sbjct: 121 LAEESHIVWKDGKIFQNMVLRLRNVECGEVELQLHWVDIPGSK 163

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453173|ref|XP_002275235.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Vitis vinifera] gi|296087148|emb|CBI33522.3| unnamed protein product [Vitis vinifera]

 Score =  275 bits (702), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 127/165 (76%), Positives = 151/165 (91%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSI 60
           ME+L GLLR+HV RGVNLA RDV+SSDPYV+++MGKQKLKTRVV  NVNPEWNEDLTLS+
Sbjct: 1   MEHLHGLLRIHVHRGVNLAKRDVLSSDPYVIVRMGKQKLKTRVVNKNVNPEWNEDLTLSV 60

Query: 61  SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 120
            D+NLP+K+ VYD+DTFSLDDKMGDAEF I PF+EAL+M L GLP+GTI+T++QP+RENC
Sbjct: 61  DDTNLPVKIFVYDRDTFSLDDKMGDAEFQIGPFVEALRMELNGLPSGTIITRVQPNRENC 120

Query: 121 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 165
           LAEES I+WT+GK+VQNL LRLRNVE GEV++QL+WIDIPGSRGL
Sbjct: 121 LAEESCIIWTEGKVVQNLVLRLRNVESGEVELQLQWIDIPGSRGL 165

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724231|ref|NP_001235515.1| uncharacterized protein LOC100306214 [Glycine max] gi|255627881|gb|ACU14285.1| unknown [Glycine max]

 Score =  274 bits (701), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 130/165 (78%), Positives = 147/165 (89%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSI 60
           MENL+GLLR+HV +GVNLA+RDVVSSDPYVVIKMGKQKLKTRVV  N+NPEWN+DLTLSI
Sbjct: 1   MENLLGLLRIHVEKGVNLAIRDVVSSDPYVVIKMGKQKLKTRVVNKNLNPEWNDDLTLSI 60

Query: 61  SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 120
           SD + PI L VYDKDTFS+DDKMGDAEF+I PF+EA+KMRL  LPN TIVTK+ PSR+N 
Sbjct: 61  SDPHAPIHLHVYDKDTFSMDDKMGDAEFFIGPFIEAVKMRLSSLPNNTIVTKVLPSRQNS 120

Query: 121 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 165
           LAEESHIVW DGK+VQN+ LRLRNVE GEV++QL WIDIPGSR L
Sbjct: 121 LAEESHIVWKDGKVVQNMVLRLRNVETGEVELQLHWIDIPGSRHL 165

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456194|ref|XP_004145835.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11-like [Cucumis sativus]

 Score =  271 bits (694), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 125/165 (75%), Positives = 147/165 (89%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSI 60
           MENLMGLLR+HV RGVNLAVRDV SSDPYV+ KMGKQKLKTRVVK N+NPEWNEDLTLSI
Sbjct: 1   MENLMGLLRIHVFRGVNLAVRDVSSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSI 60

Query: 61  SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 120
            D +LP+ + VYDKD FSLDDKMGDAEF + PF+EA+KMRL  LP+GTI+ KIQPSRENC
Sbjct: 61  QDPSLPVNVLVYDKDLFSLDDKMGDAEFDVRPFVEAVKMRLNNLPSGTIIRKIQPSRENC 120

Query: 121 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 165
           L+EES I+W +G+++Q +FLRLRNVE GE+++QL+WIDIPGSRGL
Sbjct: 121 LSEESCIIWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL 165

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069412|ref|XP_002302974.1| predicted protein [Populus trichocarpa] gi|222844700|gb|EEE82247.1| predicted protein [Populus trichocarpa]

 Score =  269 bits (687), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 123/165 (74%), Positives = 148/165 (89%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSI 60
           MENL+GLLR+HV RG++LA+RD+ SSDPYVV+KMGKQKLKTRV+K N+NPEWN+DLTLS+
Sbjct: 1   MENLLGLLRIHVTRGIDLAIRDIRSSDPYVVVKMGKQKLKTRVIKQNINPEWNDDLTLSV 60

Query: 61  SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 120
            D NLP+ + VYDKDTFSLDDKMGDAEF I  F+E +KM+L+ LPNGTI+ KIQPSRENC
Sbjct: 61  VDPNLPVLIKVYDKDTFSLDDKMGDAEFDIRQFIEVVKMQLDNLPNGTIIRKIQPSRENC 120

Query: 121 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 165
           LAEES IVW  GK++QN+FLRLR+VE GEV++QLEWIDIPGSRG+
Sbjct: 121 LAEESCIVWASGKVIQNMFLRLRHVESGEVELQLEWIDIPGSRGM 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
TAIR|locus:2088505	177	C2 "AT3G17980" [Arabidopsis th	1.0	0.932	0.715	1.6e-63
TAIR|locus:2201497	174	AT1G66360 "AT1G66360" [Arabido	0.981	0.931	0.658	9.3e-59
TAIR|locus:2035042	168	AT1G73580 "AT1G73580" [Arabido	1.0	0.982	0.660	8.4e-58
TAIR|locus:2014020	165	AT1G70810 "AT1G70810" [Arabido	1.0	1.0	0.660	1.3e-54
TAIR|locus:2013905	185	AT1G70790 "AT1G70790" [Arabido	0.975	0.870	0.625	5.6e-52
TAIR|locus:2049602	180	AT2G01540 "AT2G01540" [Arabido	0.975	0.894	0.582	8.5e-49
TAIR|locus:2014015	174	EHB1 "AT1G70800" [Arabidopsis	1.0	0.948	0.581	3.7e-48
TAIR|locus:2201190	165	AT1G23140 "AT1G23140" [Arabido	0.981	0.981	0.561	1.1e-46
TAIR|locus:2077367	385	AT3G07940 [Arabidopsis thalian	0.963	0.412	0.475	1.7e-34
TAIR|locus:2115904	336	AGD13 "ARF-GAP domain 13" [Ara	0.951	0.467	0.450	2.9e-32

TAIR|locus:2088505 C2 "AT3G17980" [Arabidopsis thaliana (taxid:3702)]

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 118/165 (71%), Positives = 145/165 (87%)

Query:     1 MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSI 60
             M++L+GLLR+ + RGVNLAVRD+ SSDPYVV+KMGKQKLKTRV+  +VNPEWNEDLTLS+
Sbjct:    13 MDDLLGLLRIRIKRGVNLAVRDISSSDPYVVVKMGKQKLKTRVINKDVNPEWNEDLTLSV 72

Query:    61 SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 120
             +DSNL + LTVYD D FS DDKMGDAEF I P++EAL+M+L+GLP+GTIVT ++PSR NC
Sbjct:    73 TDSNLTVLLTVYDHDMFSKDDKMGDAEFEIKPYIEALRMQLDGLPSGTIVTTVKPSRRNC 132

Query:   121 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 165
             LAEES + W DGKLVQ+L LRLR+VE GEV+ QL+WID+PGS+GL
Sbjct:   133 LAEESRVTWVDGKLVQDLVLRLRHVECGEVEAQLQWIDLPGSKGL 177

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2201497 AT1G66360 "AT1G66360" [Arabidopsis thaliana (taxid:3702)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 108/164 (65%), Positives = 142/164 (86%)

Query:     1 MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSI 60
             MEN++GLLR+HV+RGVNLA+RD  SSDPYV+++MGKQKL+TRV+K N+N EWNEDLTLS+
Sbjct:     1 MENMLGLLRLHVIRGVNLAIRDSQSSDPYVIVRMGKQKLRTRVMKKNLNTEWNEDLTLSV 60

Query:    61 SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMR--LEGLPNGTIVTKIQPSRE 118
             +D  LP+K+ VYD+D FS DDKMGDA F+I PFLEA++++  L GLP GT++ KIQ SR+
Sbjct:    61 TDPTLPVKIMVYDRDRFSRDDKMGDAIFHIDPFLEAIRIQNQLGGLPEGTVIMKIQASRQ 120

Query:   119 NCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGS 162
             NCL+EES IVW  GK+VQN+FL+L+NVE GE+++QLEWID+ G+
Sbjct:   121 NCLSEESKIVWHKGKIVQNMFLKLQNVERGEIELQLEWIDVSGA 164

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2035042 AT1G73580 "AT1G73580" [Arabidopsis thaliana (taxid:3702)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 109/165 (66%), Positives = 140/165 (84%)

Query:     1 MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSI 60
             M+NL+G+LRV V RGVNLAVRDV SSDPYVV+K+G+QKLKT+VVK NVNP+W EDL+ ++
Sbjct:     4 MDNLLGILRVRVQRGVNLAVRDVSSSDPYVVLKLGRQKLKTKVVKQNVNPQWQEDLSFTV 63

Query:    61 SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 120
             +D NLP+ L VYD D FS DDKMGDAE  + P++EAL+M L GLP+GTI++ I PSR NC
Sbjct:    64 TDPNLPLTLIVYDHDFFSKDDKMGDAEIDLKPYIEALRMELSGLPDGTIISTIGPSRGNC 123

Query:   121 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 165
             LAEES+I W + ++VQ++ LRLRNVE GEV+I+L+WID+PGS+GL
Sbjct:   124 LAEESYIRWINDRIVQHICLRLRNVERGEVEIELQWIDLPGSKGL 168

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2014020 AT1G70810 "AT1G70810" [Arabidopsis thaliana (taxid:3702)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 109/165 (66%), Positives = 132/165 (80%)

Query:     1 MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSI 60
             ME L+GLLR+ V RG+NLA RD +SSDP+VVI MG QKLKTRVV+NN NPEWNE+LTL++
Sbjct:     1 MEELVGLLRIRVKRGINLAQRDTLSSDPFVVITMGSQKLKTRVVENNCNPEWNEELTLAL 60

Query:    61 SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 120
                + P+ L VYDKDTF+  DKMGDA+  I PFLE  KM L+ LP+GT + ++ P+RENC
Sbjct:    61 RHPDEPVNLIVYDKDTFTSHDKMGDAKIDIKPFLEVHKMGLQELPDGTEIKRVVPNRENC 120

Query:   121 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 165
             LAE S IV  +GK+VQN+ L LRNVE GEV+IQLEWIDIPGSRGL
Sbjct:   121 LAEASSIVSNNGKIVQNMILLLRNVECGEVEIQLEWIDIPGSRGL 165

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2013905 AT1G70790 "AT1G70790" [Arabidopsis thaliana (taxid:3702)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 102/163 (62%), Positives = 125/163 (76%)

Query:     5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSN 64
             +G+LRVHV RG+NLA+RD  +SDPYVVI +  QKLKTRV+ NN NP WNE LTLSI D N
Sbjct:     6 LGILRVHVKRGINLAIRDATTSDPYVVITLANQKLKTRVINNNCNPVWNEQLTLSIKDVN 65

Query:    65 LPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLE--GLPNGTIVTKIQPSRENCLA 122
              PI+LTV+DKD FS DDKMGDAE    PFLEA +M L+   LPNG  + +I+P R NCLA
Sbjct:    66 DPIRLTVFDKDRFSGDDKMGDAEIDFRPFLEAHQMELDFQKLPNGCAIKRIRPGRTNCLA 125

Query:   123 EESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 165
             EES I W++GK++Q + LRL+NVE GEV++ LEW D PG +GL
Sbjct:   126 EESSITWSNGKIMQEMILRLKNVECGEVELMLEWTDGPGCKGL 168

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2049602 AT2G01540 "AT2G01540" [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 95/163 (58%), Positives = 124/163 (76%)

Query:     5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSN 64
             +GLL +HV RG+NLA+RD  SSDPY+V+ +  Q LKTRVVK N NP WNE++T++I D N
Sbjct:     6 LGLLTIHVKRGINLAIRDHRSSDPYIVLNVADQTLKTRVVKKNCNPVWNEEMTVAIKDPN 65

Query:    65 LPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLE--GLPNGTIVTKIQPSRENCLA 122
             +PI+LTV+D D F+ DDKMGDA   I P+LEALKM +E   LPNG  + ++QPSR NCL+
Sbjct:    66 VPIRLTVFDWDKFTGDDKMGDANIDIQPYLEALKMGMELLRLPNGCAIKRVQPSRHNCLS 125

Query:   123 EESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 165
             +ES IVW +GK+ Q+L LRL NVE GE++I LEW +  G RG+
Sbjct:   126 DESSIVWNNGKITQDLILRLNNVECGEIEIMLEWHEGAGCRGI 168

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2014015 EHB1 "AT1G70800" [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 96/165 (58%), Positives = 129/165 (78%)

Query:     1 MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSI 60
             M+ L+GL+R+ V RG++LA RD +SSDP+VVI MG QKLK+  VKNN NPEWNE+LTL+I
Sbjct:    10 MKELVGLVRILVKRGIDLARRDALSSDPFVVITMGPQKLKSFTVKNNCNPEWNEELTLAI 69

Query:    61 SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 120
              D N P+KL VYDKDTF+ DDKMGDA+  + PFL+  K+ L+ LP+G  + +I P+R+NC
Sbjct:    70 EDPNEPVKLMVYDKDTFTADDKMGDAQIDMKPFLDVHKLGLKELPHGKELKRIVPTRDNC 129

Query:   121 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGSRGL 165
             L+E+S IV  +GK+VQ++ L L+NVE G+V+IQLEW+  PG  GL
Sbjct:   130 LSEDSIIVSDNGKIVQDMILLLKNVECGKVEIQLEWLKNPGGSGL 174

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009637 "response to blue light" evidence=IMP

GO:0009638 "phototropism" evidence=IMP

TAIR|locus:2201190 AT1G23140 "AT1G23140" [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 91/162 (56%), Positives = 125/162 (77%)

Query:     1 MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSI 60
             MENL+GLLR+ V RG+NL  RD  +SDP+VV+ MG QKLKTR V+N+ NPEW+++LTL I
Sbjct:     1 MENLVGLLRIRVKRGINLVSRDSNTSDPFVVVTMGSQKLKTRGVENSCNPEWDDELTLGI 60

Query:    61 SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC 120
             +D N  + L VYDKDTF+  D MGDAE  I PF E     ++ L NGT + +++PS +NC
Sbjct:    61 NDPNQHVTLEVYDKDTFTSHDPMGDAEIDIKPFFEVQGTDIQELTNGTEIRRVKPSGDNC 120

Query:   121 LAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDIPGS 162
             LAEES I++++GK++Q++ L+LRNVE GEV+IQ+EWI++ GS
Sbjct:   121 LAEESRIIFSNGKILQDMILQLRNVESGEVEIQIEWINVTGS 162

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

TAIR|locus:2077367 AT3G07940 [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 76/160 (47%), Positives = 109/160 (68%)

Query:     1 MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSI 60
             M   +GL++V+V++G NLAVRDV++SDPYV++ +G+Q +KTRV+KNN+NP WNE L LSI
Sbjct:   224 MVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGQQSVKTRVIKNNLNPVWNETLMLSI 283

Query:    61 SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKM-RLEGLPNGTIVTKIQPSREN 119
              +   P+K+ VYDKDTFS DD MG+AE  I P + A K      +     +     S+EN
Sbjct:   284 PEPMPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVSAAKAYETSSIKEPMQLGSWVASKEN 343

Query:   120 CLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDI 159
              L  +  I+  DGK+ Q++ LRL+NVE G ++IQLE + +
Sbjct:   344 TLVSDGIILLEDGKVKQDISLRLQNVERGVLEIQLECLPL 383

GO:0005634 "nucleus" evidence=ISM

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

TAIR|locus:2115904 AGD13 "ARF-GAP domain 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 73/162 (45%), Positives = 112/162 (69%)

Query:     1 MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSI 60
             M   +GLL+V + +G NLA+RD++SSDPYVV+ +GKQKL+T V+ +N+NP WN++L LS+
Sbjct:   175 MVEFIGLLKVTIKKGTNLAIRDMMSSDPYVVLNLGKQKLQTTVMNSNLNPVWNQELMLSV 234

Query:    61 SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPN--GTI-VTKIQPSR 117
              +S  P+KL VYD DTFS DD MG+A+  I P + +  M   G P   G + + K   S 
Sbjct:   235 PESYGPVKLQVYDYDTFSADDIMGEADIDIQPLITSA-MAF-GDPEMFGDMQIGKWLKSH 292

Query:   118 ENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDI 159
             +N L ++S I   DGK+ Q + ++L+NVE GE+++++EW+ +
Sbjct:   293 DNPLIDDSIINIVDGKVKQEVQIKLQNVESGELELEMEWLPL 334

GO:0005634 "nucleus" evidence=ISM

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0009555 "pollen development" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017844001 SubName- Full=Putative uncharacterized protein (Chromosome chr17 scaffold_16, whole genome shotgun sequence); (165 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	165
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	7e-72
pfam00168	85	pfam00168, C2, C2 domain	9e-24
cd00030	102	cd00030, C2, C2 domain	7e-23
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	9e-21
smart00239	101	smart00239, C2, Protein kinase C conserved region	3e-20
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	5e-19
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	2e-15
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	7e-15
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	1e-14
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	1e-14
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	2e-14
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	2e-13
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	3e-13
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	5e-13
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	1e-12
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	2e-11
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	3e-11
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	4e-11
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	7e-11
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	1e-10
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	2e-10
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	3e-10
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	3e-10
cd04018	151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	3e-10
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	4e-10
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	5e-10
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	5e-10
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	5e-10
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	1e-09
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	2e-09
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	3e-09
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	4e-09
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	6e-09
cd04032	127	cd04032, C2_Perforin, C2 domain of Perforin	1e-08
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	5e-08
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	6e-08
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	1e-07
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	1e-07
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	1e-07
cd08379	126	cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe	2e-07
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	2e-07
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	2e-07
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	3e-07
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	3e-07
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	5e-07
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	5e-07
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	5e-07
cd08678	126	cd08678, C2_C21orf25-like, C2 domain found in the	7e-07
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	8e-07
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	2e-06
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	2e-06
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	2e-06
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	3e-06
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	3e-06
PLN03008	868	PLN03008, PLN03008, Phospholipase D delta	3e-06
cd04015	158	cd04015, C2_plant_PLD, C2 domain present in plant	3e-06
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	4e-06
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	1e-05
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	1e-05
cd08378	121	cd08378, C2B_MCTP_PRT_plant, C2 domain second repe	2e-05
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	3e-05
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	3e-05
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	4e-05
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	1e-04
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	1e-04
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	1e-04
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	1e-04
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	2e-04
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	3e-04
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	7e-04
cd08380	156	cd08380, C2_PI3K_like, C2 domain present in phosph	7e-04
cd08690	155	cd08690, C2_Freud-1, C2 domain found in 5' repress	0.002

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score =  212 bits (542), Expect = 7e-72
 Identities = 88/144 (61%), Positives = 109/144 (75%), Gaps = 1/144 (0%)

Query: 6   GLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNL 65
           GLL+V V+RG NLAVRD  SSDPYVV+ +G QK+KTRV+K N+NP WNE+LTLS+ +   
Sbjct: 2   GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMA 61

Query: 66  PIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMR-LEGLPNGTIVTKIQPSRENCLAEE 124
           P+KL V+DKDTFS DD MG+AE  + P +EA K+  L   P GT + K+ PS ENCLA E
Sbjct: 62  PLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAKLDHLRDTPGGTQIKKVLPSVENCLASE 121

Query: 125 SHIVWTDGKLVQNLFLRLRNVEVG 148
           SHI W DGK+VQ+L L+LRNVE G
Sbjct: 122 SHITWKDGKIVQDLVLKLRNVESG 145

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 88.5 bits (220), Expect = 9e-24
 Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 5/85 (5%)

Query: 8  LRVHVLRGVNLAVRDVVS-SDPYVVIKMGKQK---LKTRVVKNNVNPEWNEDLTLSISDS 63
          LRV V+   NL  +D+   SDPYV + +G QK    KT+VVKN +NP WNE  T  ++  
Sbjct: 1  LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 64 NLP-IKLTVYDKDTFSLDDKMGDAE 87
           L  +++ VYD D F  DD +G+  
Sbjct: 61 ELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 86.7 bits (215), Expect = 7e-23
 Identities = 40/94 (42%), Positives = 57/94 (60%), Gaps = 3/94 (3%)

Query: 8  LRVHVLRGVNLAVRDVV-SSDPYVVIKMG-KQKLKTRVVKNNVNPEWNEDLTLSISDSNL 65
          LRV V+   NL  +D+   SDPYV + +G KQK KT+VVKN +NP WNE     + D   
Sbjct: 1  LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60

Query: 66 P-IKLTVYDKDTFSLDDKMGDAEFYITPFLEALK 98
            + + V+DKD FS DD +G+ E  ++  L++ K
Sbjct: 61 DTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGK 94

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 81.9 bits (203), Expect = 9e-21
 Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 7  LLRVHVLRGVNLAVRDVV-SSDPYVVIKM-GKQKLKTRVVKNNVNPEWNEDLTLSISDSN 64
           L +H+  G NLA RD   +SDPYV  K  GK   K++ +  N+NP W+E  TL I D  
Sbjct: 1  QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVT 60

Query: 65 LPIKLTVYDKDTFSLDDKMGDAEF 88
           P+ + V+D D    DD MG A  
Sbjct: 61 QPLYIKVFDYDRGLTDDFMGSAFV 84

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 79.8 bits (197), Expect = 3e-20
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 5/87 (5%)

Query: 7  LLRVHVLRGVNLAVRDVV-SSDPYVVIKMG---KQKLKTRVVKNNVNPEWNEDLTLSISD 62
           L V ++   NL  +D    SDPYV + +    K+K KT+VVKN +NP WNE     +  
Sbjct: 1  TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 63 SNL-PIKLTVYDKDTFSLDDKMGDAEF 88
            L  +++ VYDKD F  DD +G    
Sbjct: 61 PELAELEIEVYDKDRFGRDDFIGQVTI 87

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 77.5 bits (191), Expect = 5e-19
 Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 4/87 (4%)

Query: 6  GLLRVHVLRGVNLAVRDVVS---SDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSI-S 61
          G+LRVHV+   +LA +D      SDPY ++ +G Q+ KT+ + N +NP+WN      I S
Sbjct: 1  GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFS 60

Query: 62 DSNLPIKLTVYDKDTFSLDDKMGDAEF 88
            N  +KL ++DKD F+  D +G+ + 
Sbjct: 61 AQNQLLKLILWDKDRFAGKDYLGEFDI 87

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 68.1 bits (167), Expect = 2e-15
 Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 19/119 (15%)

Query: 6   GLLRVHVLRGVNLAVRDVV-------SSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTL 58
           G+LR+HV+   +L  +D          SDPYV++++G Q  K++V+K N+NP+WNE    
Sbjct: 1   GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEA 60

Query: 59  SISD-SNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMR-------LEGLPNGTI 109
            + +     +++ ++D+D    DD +G     +       K         LE + +G +
Sbjct: 61  VVDEVPGQELEIELFDEDPDK-DDFLGRLSIDLG---SVEKKGFIDEWLPLEDVKSGRL 115

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 66.1 bits (162), Expect = 7e-15
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 27 DPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSI--SDSNLPIKLTVYDKDTFSLDDKMG 84
          DP+V+I  G++  +T   ++ +NP +NE L   +   + N  I+  V DKD FS +D + 
Sbjct: 27 DPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVA 86

Query: 85 DAEFYITPFLEA 96
               +   L A
Sbjct: 87 TGSLSVQELLNA 98

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 66.1 bits (162), Expect = 1e-14
 Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 8/88 (9%)

Query: 7  LLRVHVLRGVNLAVRDVVS-SDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSISD 62
          LL V VLR  N+   D++S  D YV + +     +K +T+ +KN++NP WNE     I  
Sbjct: 1  LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRI-Q 59

Query: 63 SNLPIKL--TVYDKDTFSLDDKMGDAEF 88
          S +   L  TV D+D    DD +G   F
Sbjct: 60 SQVKNVLELTVMDEDYVM-DDHLGTVLF 86

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 65.7 bits (161), Expect = 1e-14
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 6  GLLRVHVLRGVNLAVRDVV--SSDPYVVI---KMGKQKLKTRVVKNNVNPEWNEDLTLSI 60
          G+L V + R  +L   D    SSDPYV     K GK    TR+++ ++NP W E   + +
Sbjct: 1  GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLV 60

Query: 61 S----DSNLPIKLTVYDKDTFSLDDKMGDAEFYI 90
          +     +   +   ++D D F+ DD++G  E  +
Sbjct: 61 TPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDL 94

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 65.4 bits (160), Expect = 2e-14
 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 14/124 (11%)

Query: 6   GLLRVHVLRGVNLAVRDVVSS-DPYVVIKMGKQKLKTRVVKN-NVNPEWNEDLTLSISDS 63
           G L V ++    L   D +   DPYV+I+   Q+ K++V K    NPEWNE    ++   
Sbjct: 1   GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYP 60

Query: 64  NLP----IKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSREN 119
                  + L + DKD FS DD +G+A  ++    E      EG+  GT   ++ P++ N
Sbjct: 61  GWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFE------EGVEPGTA--ELVPAKYN 112

Query: 120 CLAE 123
            + E
Sbjct: 113 VVLE 116

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 62.6 bits (153), Expect = 2e-13
 Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 10/85 (11%)

Query: 7  LLRVHVLRGVNLAVRDVVS-SDPYVVIKMGKQKLKTR--VVKNNVNPEWNEDLTLSISDS 63
          L+RV+V+R  NL  +D    SDPY+ IK+GK+K+  R   + N +NP + +   L  +  
Sbjct: 1  LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEAT-- 58

Query: 64 NLPI----KLTVYDKDTFSLDDKMG 84
           LP     K++V D D    DD +G
Sbjct: 59 -LPGNSILKISVMDYDLLGSDDLIG 82

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 62.8 bits (153), Expect = 3e-13
 Identities = 44/152 (28%), Positives = 66/152 (43%), Gaps = 34/152 (22%)

Query: 6   GLLRVHVLRGVNLAVRDVVS-SDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSN 64
           G L V ++ G +L   +    SDPY  + MG Q+ KT+VV + +NP+WN  +   + D  
Sbjct: 15  GRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLE 74

Query: 65  LPIK-LTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAE 123
             +  +TV+D+D FS DD +G  E           +R         V  I         +
Sbjct: 75  QDVLCITVFDRDFFSPDDFLGRTE-----------IR---------VADILKET-----K 109

Query: 124 ESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLE 155
           ES    T         L L  V  GEV ++L+
Sbjct: 110 ESKGPITKR-------LLLHEVPTGEVVVKLD 134

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 61.5 bits (150), Expect = 5e-13
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 7/84 (8%)

Query: 6  GLLRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSN 64
          G L+V V+R   LA  D+   SDP+ V+++   +L+T  +   +NPEWN+  T  I D +
Sbjct: 1  GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIH 60

Query: 65 LPIKLTVYDKDTFSLDDKMGDAEF 88
            +++TVYD      +DK    EF
Sbjct: 61 DVLEVTVYD------EDKDKKPEF 78

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 60.8 bits (148), Expect = 1e-12
 Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 8/89 (8%)

Query: 7  LLRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQK-------LKTRVVKNNVNPEWNEDLTL 58
          +LRV VL G++LA +D+  +SDPYV I +           ++T+ +K  +NP+WNE+   
Sbjct: 1  ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF 60

Query: 59 SISDSNLPIKLTVYDKDTFSLDDKMGDAE 87
           ++     +   V+D++  + DD +G  E
Sbjct: 61 RVNPREHRLLFEVFDENRLTRDDFLGQVE 89

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 57.3 bits (139), Expect = 2e-11
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 9  RVHVLRGVNLAVRDV-VSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPI 67
          +VHV     L+ +D    +DPYV+IK   + +++ V K+ ++PE++            PI
Sbjct: 6  QVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPI 65

Query: 68 KLTVYDKDTFSLDDKMGDAEFYITP 92
          K+ V++ +    D+ +G A     P
Sbjct: 66 KIQVWNSNLLC-DEFLGQATLSADP 89

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 60.5 bits (147), Expect = 3e-11
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 5   MGLLRVHVLRGVNLAVRDVV---SSDPYVVIKM-GKQKLKTRVVKNNVNPEWNEDLTLSI 60
           +G++ V +     L   D     + DPY+ +    +   KTRV KN +NP WNE   + +
Sbjct: 435 IGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILL 494

Query: 61  SDSNLPIKLTVYDKDTFSLDDKMGDAEF 88
           +    P+ L++YD ++F  D  +G  + 
Sbjct: 495 NSFTDPLNLSLYDFNSFKSDKVVGSTQL 522

Length = 1227

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 57.0 bits (138), Expect = 4e-11
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 16/92 (17%)

Query: 8   LRVHVLRGVNLAVRDVV-SSDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSISDS 63
           L + +L+ V L  +D   +SDP+V I +    K KL+T+V + N+NP WNE         
Sbjct: 18  LTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF----E 73

Query: 64  NLPIK--------LTVYDKDTFSLDDKMGDAE 87
             P +        L V D D FS +D +G+  
Sbjct: 74  GFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVS 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 56.1 bits (136), Expect = 7e-11
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 11/106 (10%)

Query: 6   GLLRVHVLRGVNLAVRDVVS-SDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLTLS 59
             L V V    NL   D    SDPYV +K+      + K KT+ +K  +NP WNE  T  
Sbjct: 13  NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFD 72

Query: 60  ISDSNLPIKLT--VYDKDTFSLDDKMGDAEFYITPFLEALKMRLEG 103
           +  ++   +L+  V+D D  + +D MG   F ++   E +KM ++G
Sbjct: 73  LKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVS---ELIKMPVDG 115

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 55.3 bits (134), Expect = 1e-10
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)

Query: 6  GLLRVHVLRGVNLAVRDVVSS--DPYVVIKMGKQK--LKTRVVKNNVNPEWNEDLTLSIS 61
          G+L V +     L   D++    DPYV   +  ++   +T+V K+  NP WNE   + ++
Sbjct: 2  GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN 61

Query: 62 DSNLPIKLTVYDKDTFSLDDKMGDAEF 88
              P+ LTVYD +    D  +G AEF
Sbjct: 62 SLTEPLNLTVYDFNDKRKDKLIGTAEF 88

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 55.0 bits (133), Expect = 2e-10
 Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 7  LLRVHVLRGVNLAVRDVVS-SDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSI-SDSN 64
          ++ + ++ G NL   D    SDPYV  ++G +K K++V    +NP+W E   L +  D +
Sbjct: 1  VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQS 60

Query: 65 LPIKLTVYDKDTFSLDDKMG 84
            +++ V+DKDT   D+ +G
Sbjct: 61 QILEIEVWDKDTGKKDEFIG 80

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 54.9 bits (133), Expect = 3e-10
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 9/88 (10%)

Query: 6   GLLRVHVLRGVNL-AVRDVVSSDPYVVIKM--GKQKL---KTRVVKNNVNPEWNEDLTLS 59
             L V VL+  NL        SDPYV + +  G +KL   KT V K  +NP +NE  +  
Sbjct: 14  ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFD 73

Query: 60  ISDSNLP---IKLTVYDKDTFSLDDKMG 84
           +    L    + +TV DKD+   ++ +G
Sbjct: 74  VPAEQLEEVSLVITVVDKDSVGRNEVIG 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 54.7 bits (132), Expect = 3e-10
 Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 9/106 (8%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVI-----KMGKQKLKTRVVKNNVNPEWNEDLTLS 59
             L V ++R VNLA  D    SDP+V +        K K KT+V K  +NPE+NE+    
Sbjct: 13  RGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD 72

Query: 60  ISDSNLPIK---LTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLE 102
           I  S+L  K   +TV+DKD    +D +G  +  I    E L+  L+
Sbjct: 73  IKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINAKGERLRHWLD 118

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin

 Score = 54.9 bits (133), Expect = 3e-10
 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 8/63 (12%)

Query: 27 DPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLP-----IKLTVYDKDTFSLDD 81
          DPYV +    QK+KT V KN+ NPEWNE +         P     IK+ + D D    DD
Sbjct: 36 DPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEM---FPPLCERIKIQIRDWDRVGNDD 92

Query: 82 KMG 84
           +G
Sbjct: 93 VIG 95

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 54.1 bits (130), Expect = 4e-10
 Identities = 21/51 (41%), Positives = 34/51 (66%)

Query: 25 SSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKD 75
          +SDPYV +++GK K +T+ +  N+NP WNE       +S+  IK+ V+D+D
Sbjct: 21 TSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDED 71

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 53.9 bits (130), Expect = 5e-10
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 6/94 (6%)

Query: 8  LRVHVLRGVNLAVRDVVS--SDPYVVIKMGKQKLKTRVVKNNVNPEWN-EDLTLSISDSN 64
          L+V V+   +L V D  S  +D +V +K G    KT VVK ++NP WN E     + D  
Sbjct: 1  LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEE 60

Query: 65 L---PIKLTVYDKDTFSLDDKMGDAEFYITPFLE 95
          L   P+++ V D DT+S +D +G     + P L 
Sbjct: 61 LQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLL 94

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 53.7 bits (130), Expect = 5e-10
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 8  LRVHVLRGVNLAVRDVVS-SDPYVVIKM-GKQKLKTRVVKNNVNPEWNEDLTLSI-SDSN 64
          L V V+   NL   D    SDP+V   + G++  KT+ +K  +NP WNE   + + S   
Sbjct: 1  LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVR 60

Query: 65 LPIKLTVYDKDTFSLDDKMGDAE 87
            +K+ VYD D    DD +G A 
Sbjct: 61 AVLKVEVYDWDRGGKDDLLGSAY 83

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 54.6 bits (132), Expect = 5e-10
 Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 10/91 (10%)

Query: 4   LMGLLRVHVLRGVNL-AVRDVVSSDPYVVI-----KMGKQKLKTRVVKNNVNPEWNEDLT 57
             G L V V    NL A++   +SD +V       K  K K KT VVK +VNP WN    
Sbjct: 25  STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFV 84

Query: 58  LS-ISDSNLP---IKLTVYDKDTFSLDDKMG 84
              +S  +L    ++LTV+D D  S +D +G
Sbjct: 85  YDGVSPEDLSQACLELTVWDHDKLSSNDFLG 115

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 52.6 bits (127), Expect = 1e-09
 Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 2   ENLMGLLRVHVLRGVNLAVRDVV--SSDPYVVI-----KMGKQKLKTRVVKNNVNPEWNE 54
               G L VH+    NLA  D     S+PYV +     K  + K KT V KN  NP +NE
Sbjct: 10  NYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNE 69

Query: 55  DLTLSISDSNL---PIKLTVYDKDTFSLDDKMGDAE 87
            L   IS S L    ++L+V+  D F  +  +G+ E
Sbjct: 70  TLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVE 105

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 52.1 bits (125), Expect = 2e-09
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query: 8  LRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISD-SNL 65
          LR HVL   +LA +D   +SDP+V +    Q L+T VVK +  P WNE     + + ++ 
Sbjct: 2  LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADS 61

Query: 66 PIKLTVYDKDTFSLDDKMGDAEFYITPFLEAL 97
          P+ + V+D D  S +D +G   F I    +A 
Sbjct: 62 PLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAK 93

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 51.9 bits (125), Expect = 3e-09
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 13/92 (14%)

Query: 8   LRVHVLRGVNLAVRDVV-SSDPYVVIKM-------GKQKLKTRVVKNNVNPEWNEDLTLS 59
           LRV +L   NL   D   SSDP+V +++            KT+V K  + P ++E    +
Sbjct: 18  LRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFN 77

Query: 60  ISDSNLPIK-----LTVYDKDTFSLDDKMGDA 86
           +      ++      TV D D    +D  G+A
Sbjct: 78  VPPEQCSVEGALLLFTVKDYDLLGSNDFEGEA 109

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 51.6 bits (124), Expect = 4e-09
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 8  LRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISD---- 62
          L V V+   +L  +D   SS  YV +    QK +TR    ++NP WNE L  ++SD    
Sbjct: 2  LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRL 61

Query: 63 SNLPIKLTVYDKDTFS 78
          SNL +++ VY+     
Sbjct: 62 SNLVLEVYVYNDRRSG 77

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 51.1 bits (123), Expect = 6e-09
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 7/87 (8%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSIS 61
             L V +++  +L   D+  +SDPYV + +    K+K +T+V +  +NP +NE  T  + 
Sbjct: 16  NQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVP 75

Query: 62  DSNL---PIKLTVYDKDTFSLDDKMGD 85
            S L    +  +VYD D FS  D +G+
Sbjct: 76  YSELGNKTLVFSVYDFDRFSKHDLIGE 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 5   MGLLRVHVLRGVNLAVRDVVSS-DPYVVIKMGKQKLKTRVVKNNVNPEWNEDL-----TL 58
           +  L V VLR   L   D  +S D YV +  G Q+ +T V+ NN NP WN         L
Sbjct: 27  LATLTVTVLRATGLW-GDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVEL 85

Query: 59  SISDSNLPIKLTVYDKDTFSLDDKMG 84
           S       ++  V+D+D    DD +G
Sbjct: 86  SPGG---KLRFEVWDRDNGWDDDLLG 108

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 48.4 bits (116), Expect = 5e-08
 Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 6  GLLRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQKLKTRVV-KNNVNPEWNEDLTLSISDS 63
          G L V VL+  NL  +  +   DPY V+++G    KT+   +   +PEW+E+L   I++ 
Sbjct: 1  GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED 60

Query: 64 NLPI-KLTVYDKDTFSLDDKMGDAEFYITPFLE 95
            PI K+ V+D D     D +GD E  ++P L+
Sbjct: 61 KKPILKVAVFD-DDKRKPDLIGDTEVDLSPALK 92

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 48.0 bits (115), Expect = 6e-08
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 12/87 (13%)

Query: 9  RVHVLRGVNLAVRDVVSS--DPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNL- 65
          RV V+       R +V    DP V +++G QK  T V K    P +NE    +  +S   
Sbjct: 7  RVRVIEA-----RQLVGGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDE 61

Query: 66 ----PIKLTVYDKDTFSLDDKMGDAEF 88
               IK++VYD  +   D  +G  + 
Sbjct: 62 LFDKIIKISVYDSRSLRSDTLIGSFKL 88

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 8/73 (10%)

Query: 6  GLLRVHVLRGVNL----AVRDVVSSDPYV-VIKMGKQKLKTRVVKNNVNPEWNEDLTLSI 60
          G+LR+H+ +  +L     V  +   DPYV V+  G  K +T  + N +NP W+E L + +
Sbjct: 1  GVLRLHIRKANDLKNLEGVGKI---DPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPV 57

Query: 61 SDSNLPIKLTVYD 73
          +  N  I L V D
Sbjct: 58 TSPNQKITLEVMD 70

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 47.8 bits (114), Expect = 1e-07
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 7/90 (7%)

Query: 5   MGLLRVHVLRGVNLAVRDVVS-SDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSI 60
           MG+L V +++  NL  RD    +DPY  +++        ++++ K  +NPE++E     +
Sbjct: 15  MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEV 74

Query: 61  SDSNLP---IKLTVYDKDTFSLDDKMGDAE 87
               LP   +++ +YD D FS D+ +G  E
Sbjct: 75  PPQELPKRTLEVLLYDFDQFSRDECIGVVE 104

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 7/71 (9%)

Query: 8  LRVHVLRGVNLAVRDVVSS-DPYVVIKM-GKQKLKTRVVKNNVNPEWNE--DLTLSISDS 63
          +R+ VL    LA RD+    DP+ VI + G Q   T V K  ++P+WNE  DLT+  S  
Sbjct: 2  VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGPSSI 61

Query: 64 NLPIKLTVYDK 74
             I + V+D+
Sbjct: 62 ---ITIQVFDQ 69

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 7/88 (7%)

Query: 25  SSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYD-KDTFSLDDKM 83
           S+D Y V K G + ++TR V+++ NP WNE  T  + D    + + V+D   +   +   
Sbjct: 23  STDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAVQ 82

Query: 84  GDAEFYITPFLEALKMRLEGLPNGTIVT 111
            D        +  +++RL  L +  +  
Sbjct: 83  PDV------LIGKVRIRLSTLEDDRVYA 104

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 13/88 (14%)

Query: 13 LRGVNLAVRDVVS-SDPYVVI-KM---GKQKL--KTRVVKNNVNPEWNEDLTLSIS---- 61
            G  L  +D    SDP++ I +    G   L  +T V+KN +NP W    T+ +     
Sbjct: 7  FSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKP-FTIPLQKLCN 65

Query: 62 -DSNLPIKLTVYDKDTFSLDDKMGDAEF 88
           D + PIK+ VYD D+    D +G+ E 
Sbjct: 66 GDYDRPIKIEVYDYDSSGKHDLIGEFET 93

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 5/88 (5%)

Query: 10 VHVLRGVNL-AVRDVVSSDPYVVI--KMGKQKL-KTRVVKNNVNPEWNEDLTLSISDSN- 64
          + ++R  NL A      SDPYV +    GK+++ KTR + + +NP W+E+  L +     
Sbjct: 5  IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEP 64

Query: 65 LPIKLTVYDKDTFSLDDKMGDAEFYITP 92
          L I  TV+D+      D  G A   + P
Sbjct: 65 LWISATVWDRSFVGKHDLCGRASLKLDP 92

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 10/87 (11%)

Query: 8   LRVHVLRGVNLAVRDVVS-SDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLTLS-I 60
           L V VL+  +L  RD  S  +PYV + +      K K +T+ VK  +NPEWN+    S +
Sbjct: 18  LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNV 77

Query: 61  SDSNL---PIKLTVYDKDTFSLDDKMG 84
               L    +++TV+D D    +D +G
Sbjct: 78  RRETLKERTLEVTVWDYDRDGENDFLG 104

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 46.4 bits (111), Expect = 3e-07
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 8/60 (13%)

Query: 27 DPYVVIKM------GKQKLKTRVVKNN-VNPEWNEDLTLSISDSNLP-IKLTVYDKDTFS 78
          DPYV +++         K KT+VVKNN  NP WNE     ++   L  ++  VYD+D+  
Sbjct: 26 DPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDEDSGD 85

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 45.9 bits (109), Expect = 5e-07
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 14/92 (15%)

Query: 8   LRVHVLRGVNLAVRDV--VSSDPYVVI-------KMGKQKLKTRVVKNNVNPEWNEDLTL 58
           L VHV++  +LA  D     SDPYV           GK+K  T V K  +NP +NE L  
Sbjct: 17  LHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRK--TSVKKKTLNPVFNETLRY 74

Query: 59  SISDSNLPIK---LTVYDKDTFSLDDKMGDAE 87
            +    LP +   L+V+ +D+   +  +G+ E
Sbjct: 75  KVEREELPTRVLNLSVWHRDSLGRNSFLGEVE 106

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 46.3 bits (110), Expect = 5e-07
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 9/88 (10%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYV-VIKMGK----QKLKTRVVKNNVNPEWNEDLTLS 59
             + V++++  NL   D+  +SDPYV V  M K    +K KT + K  +NP +NE    +
Sbjct: 15  NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN 74

Query: 60  ISDSNL---PIKLTVYDKDTFSLDDKMG 84
           I    L    + +TV DKD  S +D +G
Sbjct: 75  IPLERLRETTLIITVMDKDRLSRNDLIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 46.0 bits (109), Expect = 5e-07
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 8  LRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQKL-KTRVVKNNVNPEWNEDLTLSISDSNL 65
          L + ++ G NL  +D+  SSDPY ++K+  + + +T  V   +NP W E+ T+ +     
Sbjct: 2  LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFH 61

Query: 66 PIKLTVYDKDTFSLDDKMG 84
           +   V D+DT S DD +G
Sbjct: 62 TVSFYVLDEDTLSRDDVIG 80

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

 Score = 45.4 bits (108), Expect = 7e-07
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 25  SSDPYVVIKMGK--QKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDK 82
           SS+PY V++M +  QK ++   KN  NP W+E     +S ++  +   VYD    S    
Sbjct: 17  SSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKF 76

Query: 83  MGDAEFYITPFLEALKMR 100
           +G A   I PF E  K  
Sbjct: 77  LGLA---IVPFDELRKNP 91

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 45.7 bits (109), Expect = 8e-07
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 12/57 (21%)

Query: 8  LRVHVLRGVNLAVRDVVSSDP------YVVIKMGKQKLKTRVVKN-NVNPEWNEDLT 57
          LRV V+       +D+V SD       +V  ++G Q L+TR  +  N NP WNE+L 
Sbjct: 2  LRVTVI-----EAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELM 53

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 5    MGLLRVHVLRGVNLAVRDVVS-SDPYVVIKM-GKQKLKTRVVKNNVNPEWNEDLTLSI-S 61
             G L + +  G NL   D    SDP+V + +  K   KT+VVK  +NP WNE+ T+ + +
Sbjct: 1039 SGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLN 1098

Query: 62   DSNLPIKLTVYDKDTFSLDDKMGDAEF 88
                 + + V D D+   +D +G AE 
Sbjct: 1099 RVKDVLTINVNDWDSGEKNDLLGTAEI 1125

Length = 1227

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 19/88 (21%)

Query: 17 NLAVRDVVS-SDPYVVIKM---GKQKL----KTRVVKNNVNPEWNEDLTLSISDSNL--- 65
          NL  +DV+S SDP+VV+ +   G  +     +T V+KNN+NP++    T+   D      
Sbjct: 11 NLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTV---DYYFEEV 67

Query: 66 -PIKLTVYDKDTFSLDDK----MGDAEF 88
            ++  VYD D+ S D      +G+AE 
Sbjct: 68 QKLRFEVYDVDSKSKDLSDHDFLGEAEC 95

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 11/91 (12%)

Query: 8   LRVHVLRGVNLAVRDVV-SSDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLT-LSI 60
           L   ++R   L   D    SDPYV + +        KL+T+ V    NPE+NE LT   I
Sbjct: 17  LHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGI 76

Query: 61  SDSNL---PIKLTVYDKDTFSLDDKMGDAEF 88
           ++ ++    ++L V D+D F  +D +G+   
Sbjct: 77  TEEDIQRKTLRLLVLDEDRFG-NDFLGETRI 106

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 27/152 (17%), Positives = 47/152 (30%), Gaps = 52/152 (34%)

Query: 8   LRVHVLRGVNLAVRDVVSSDPYVVIKM---GKQKLK-TRVVKNNVNPEWNEDLTLSISDS 63
           L V VL   +LA++   + DP+  + +    K   K T+V K   NP ++E         
Sbjct: 1   LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDE--------- 51

Query: 64  NLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAE 123
                        F  +                    L    +    +      +   +E
Sbjct: 52  ------------AFYFE--------------------LTIGFSYEKKSFKVEEEDLEKSE 79

Query: 124 ESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLE 155
               +W    +  + FL       GEV+I L+
Sbjct: 80  LRVELWHASMVSGDDFL-------GEVRIPLQ 104

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 2   ENLMGLLRVHVLRGVNLAVRDVVS--SDPYVVI-----KMGKQKLKTRVVKNNVNPEWNE 54
           +     L VHV    NLA  D     S+PYV       K  + K KT + +N  NP +NE
Sbjct: 11  DYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNE 70

Query: 55  DLTLSISDSNL---PIKLTVYDKDTFSLDDKMGDAE 87
            L  SIS S L    ++L+V+  D F  +  +G+ E
Sbjct: 71  TLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVE 106

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|178585 PLN03008, PLN03008, Phospholipase D delta

 Score = 45.5 bits (107), Expect = 3e-06
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 21  RDVVSSDPYVVIKMGKQKL-KTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTF 77
           R V++SDPYV + + +  L +TRV+KN+  P W+E   +SI+     ++  V D D F
Sbjct: 72  RKVITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVF 129

Length = 868

>gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD)

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 12  VLRGVNLAVRDVVSSDPYVVIKMGKQKL-KTRVVKNNVNPEWNEDLTLSISDSNLPIKLT 70
           + R  +      ++SDPY  + +   ++ +TRV++N+ NP WNE   +  +     ++ T
Sbjct: 44  LKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWNESFHIYCAHYASHVEFT 103

Query: 71  VYDKDTF 77
           V D D  
Sbjct: 104 VKDNDVV 110

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 43.6 bits (103), Expect = 4e-06
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 7/86 (8%)

Query: 9  RVHVLRGVNLAVRDVV-SSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLP- 66
          +V VL+   L  +    ++D YV+I++GK+K  T V +   +P W E+ +  +       
Sbjct: 2  QVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGN 61

Query: 67 -----IKLTVYDKDTFSLDDKMGDAE 87
               ++LTV  ++   LD  +G   
Sbjct: 62 GNRATLQLTVMHRNLLGLDKFLGQVS 87

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 9/90 (10%)

Query: 8   LRVHVLRGVNLAVRD--VVSSDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTL-SIS 61
           L V+++   +L   D    +SDPYV +++    + K+KTRV++   NP ++E  T   I 
Sbjct: 18  LLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIP 77

Query: 62  DSNLP---IKLTVYDKDTFSLDDKMGDAEF 88
            + L    +   V   D +S DD +G+   
Sbjct: 78  YNQLQDLSLHFAVLSFDRYSRDDVIGEVVC 107

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 8   LRVHVLRGVNLAVR--DVVSSDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSISD 62
           L V +++  NL  R  DV   DP+V + +    ++ L+++V +   NP ++E     +S 
Sbjct: 16  LTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSF 75

Query: 63  SNLP---IKLTVYDKDTFSLDDKMGDAEF 88
             L    ++L+VYD D FS    +G   F
Sbjct: 76  KELQRRTLRLSVYDVDRFSRHCIIGHVLF 104

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 9/84 (10%)

Query: 8  LRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLP- 66
          L V V++   L      S+DP V +K+G  K  T+ ++   NPEWN+    + S   L  
Sbjct: 2  LYVRVVKARGLPA---NSNDPVVEVKLGNYKGSTKAIERTSNPEWNQ--VFAFSKDRLQG 56

Query: 67 --IKLTVYDKDTFSLDDKMGDAEF 88
            ++++V+DKD  + DD +G   F
Sbjct: 57 STLEVSVWDKDK-AKDDFLGGVCF 79

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 9/88 (10%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVIKM---GK--QKLKTRVVKNNVNPEWNEDLTLS 59
           G L V +L   NL   DV   SDPYV I +   GK  +K KT + K  +NP +NE  +  
Sbjct: 15  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE 74

Query: 60  ISD---SNLPIKLTVYDKDTFSLDDKMG 84
           +       + + +TV D D    +D +G
Sbjct: 75  VPFEQIQKVHLIVTVLDYDRIGKNDPIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 27  DPYV-VIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGD 85
           DPYV V   G+   KT V K   NP+WNE  T+ ++  +  ++  V+   T   D  +G+
Sbjct: 23  DPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTPQST-LEFKVWSHHTLKADVLLGE 81

Query: 86  AEFYITPFLEALKMRLE 102
           A   ++  L+    +LE
Sbjct: 82  ASLDLSDILKNHNGKLE 98

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 40.6 bits (96), Expect = 4e-05
 Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 11/88 (12%)

Query: 8  LRVHVLRGVNLAVRDV-VSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLT---LSISDS 63
          LR ++ +  +L   D    SDP+  +    Q  +T V+K  ++P W++ L    + +  S
Sbjct: 3  LRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGS 62

Query: 64 ------NLP-IKLTVYDKDTFSLDDKMG 84
                N P + + ++D+D+   D+ +G
Sbjct: 63 PEEIAQNPPLVVVELFDQDSVGKDEFLG 90

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 27 DPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLP-IKLTVYDKDT 76
           PYV + +GK   K++V +   NP W E  T  + +     +++ V D  T
Sbjct: 22 SPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT 72

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 11/79 (13%)

Query: 6  GLLRVHVLRGVNLAVRDVVS-SDPYVVIKM---GK--QKLKTRVVKNNVNPEWNEDLTL- 58
          G L + +++  NL   D+   SDPYV + +   G+  +K KT V KN +NP +NE L   
Sbjct: 14 GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD 73

Query: 59 ----SISDSNLPIKLTVYD 73
              ++ + +L I +  YD
Sbjct: 74 VPPENVDNVSLIIAVVDYD 92

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 9/88 (10%)

Query: 6   GLLRVHVLRGVNLAVRDVVSSDPYVVI-----KMGKQKLKTRVVKNNVNPEWNEDLTLS- 59
           G L V V+   NL + D    DPYV            K KT+VV+   NP +NE L    
Sbjct: 13  GTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDG 72

Query: 60  ISDSNLP---IKLTVYDKDTFSLDDKMG 84
           +   +L    ++++V+  D+   ++ +G
Sbjct: 73  LPVEDLQQRVLQVSVWSHDSLVENEFLG 100

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 13 LRGVNLAVRDVVSSDPYVVIKM-GKQKLKTRVVKN-NVNPEWNEDLTLSISDSNL 65
          L+ VNL  +       Y V+ +    K  T V ++   NP WNE L   + +  L
Sbjct: 12 LKNVNLFGK----MKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLL 62

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 9/88 (10%)

Query: 6   GLLRVHVLRGVNLAVRDVVS-SDPYVVIKM-GKQKL----KTRVVKNNVNPEWNEDLTLS 59
           G L V ++R   L   D+   SDP+V I++    KL    KT  ++  ++P +NE  +  
Sbjct: 14  GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFK 73

Query: 60  ISDS---NLPIKLTVYDKDTFSLDDKMG 84
           +      N+ +  TVY  +  S +D +G
Sbjct: 74  VPQEELENVSLVFTVYGHNVKSSNDFIG 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 8   LRVHVLRGVNLAVRDVV-SSDPYVVIKM--GKQ---KLKTRVVKNNVNPEWNEDLTLSIS 61
           L V VL+  +L   DV   +DPYV + +  GK+   K KT V K  +NP +NE     I 
Sbjct: 17  LTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIP 76

Query: 62  DSNLP---IKLTVYDKDTFSLDDKMGDAE 87
              L    ++  V D D  + ++ +G   
Sbjct: 77  SEELEDISVEFLVLDSDRVTKNEVIGRLV 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 37.3 bits (87), Expect = 7e-04
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 8  LRVHVLRGVNL-AVRDVVSSDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLTLSIS 61
          L V V +  NL         DPYV + +        + KT V K+N+NP ++E     +S
Sbjct: 18 LIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVS 77

Query: 62 DSNLP 66
             L 
Sbjct: 78 LEELK 82

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|176026 cd08380, C2_PI3K_like, C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 4  LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKM---GKQKLK---TRVVKNNVNPEWNEDLT 57
          +   LR+ +    N+ + D      YV +++   G+       T+ V  + +  WNE LT
Sbjct: 6  INFNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLT 65

Query: 58 LSISDSNLP----IKLTVYDKDT 76
            I  S+LP    + L++Y    
Sbjct: 66 FDILISDLPREARLCLSIYAVSE 88

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains members with the first C2 repeat, C2A, and a type-I topology, as well as some with a single C2 repeat. Length = 156

>gnl|CDD|176072 cd08690, C2_Freud-1, C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 9/55 (16%)

Query: 37 QKLKTRVVKNNVNPEWNEDLTLSISDSNL---------PIKLTVYDKDTFSLDDK 82
          Q  KT  +K+  +PE+NE   L+I+  +           +K  VY K  F   DK
Sbjct: 41 QSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDK 95

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 155

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	165
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	100.0
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	100.0
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.96
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.94
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.93
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.93
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.93
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.93
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.93
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.93
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.92
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.92
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.92
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.92
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.92
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.91
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.91
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.91
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.9
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.9
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.9
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.9
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.9
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.9
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.9
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.9
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.9
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.89
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.89
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.89
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.89
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.88
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.88
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.88
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.88
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.88
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.87
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.87
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.87
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.87
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.87
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.87
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.87
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.87
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.86
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.86
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.86
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.86
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.86
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.86
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.85
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.85
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.85
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.85
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.85
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.85
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.85
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.84
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.84
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.84
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.84
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.84
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.83
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.83
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.83
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.83
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.83
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.83
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.83
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.83
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.82
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.82
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.82
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.81
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.81
PLN03008	868	Phospholipase D delta	99.81
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.81
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.8
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.8
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.8
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.8
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.79
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.79
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.78
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.78
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.78
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.78
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.78
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.78
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.77
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.77
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.76
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.75
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.75
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.73
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.72
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.71
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.71
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.61
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.6
PLN02223	537	phosphoinositide phospholipase C	99.57
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.57
PLN02270	808	phospholipase D alpha	99.55
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.49
KOG0169	746	consensus Phosphoinositide-specific phospholipase	99.47
PLN02230	598	phosphoinositide phospholipase C 4	99.46
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.45
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.45
PLN02952	599	phosphoinositide phospholipase C	99.45
PLN02222	581	phosphoinositide phospholipase C 2	99.45
PLN02228	567	Phosphoinositide phospholipase C	99.41
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	99.4
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	99.36
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	99.34
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	99.15
PLN02352	758	phospholipase D epsilon	99.13
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	99.09
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.95
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	98.94
PLN02964	644	phosphatidylserine decarboxylase	98.72
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.65
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	98.57
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.38
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.33
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	98.11
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	98.08
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	97.97
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	97.91
KOG1327	529	consensus Copine [Signal transduction mechanisms]	97.89
KOG3837	523	consensus Uncharacterized conserved protein, conta	97.84
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	97.82
PF15627	156	CEP76-C2: CEP76 C2 domain	97.53
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	97.51
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	97.48
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	97.37
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	97.35
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	97.24
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	97.06
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	97.02
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	96.9
KOG1452	442	consensus Predicted Rho GTPase-activating protein	96.77
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	96.74
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	96.22
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	96.1
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	95.89
KOG1327	529	consensus Copine [Signal transduction mechanisms]	95.0
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	94.98
PF07162	168	B9-C2: Ciliary basal body-associated, B9 protein;	94.77
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	94.76
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	94.36
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	93.48
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	93.13
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	91.37
KOG1329	887	consensus Phospholipase D1 [Lipid transport and me	90.8
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	90.49
PTZ00447	508	apical membrane antigen 1-like protein; Provisiona	89.27
KOG0694	694	consensus Serine/threonine protein kinase [Signal	88.92
KOG0904	1076	consensus Phosphatidylinositol 3-kinase catalytic	88.56
KOG2419	975	consensus Phosphatidylserine decarboxylase [Lipid	85.06
PF06219	460	DUF1005: Protein of unknown function (DUF1005); In	80.05

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=100.00  E-value=1.9e-36  Score=206.54  Aligned_cols=165  Identities=61%  Similarity=0.951  Sum_probs=157.2

Q ss_pred             CCcccEEEEEEEEEeeCCCCCCC-CCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCC
Q 031128            1 MENLMGLLRVHVLRGVNLAVRDV-VSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSL   79 (165)
Q Consensus         1 ~~~~~g~L~V~v~~a~~L~~~~~-~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~   79 (165)
                      |..+.|.|+|+|++|.+|...|. +++||||++.+++++.+|+++.++.||+|||.|.|.+.++...|+++|||+|.+++
T Consensus         1 m~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~   80 (168)
T KOG1030|consen    1 MEMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSS   80 (168)
T ss_pred             CCccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCc
Confidence            67899999999999999999995 99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEEEechhhhhhhccc--ccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccceeeeEEEEEEEE
Q 031128           80 DDKMGDAEFYITPFLEALKMR--LEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWI  157 (165)
Q Consensus        80 d~~iG~~~i~l~~l~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~  157 (165)
                      ||++|.+.|+|..+.....+.  ..+.+.|..+..+.+...++..+++.+.+..|++.++.+.++++.++|+++.+++|+
T Consensus        81 dD~mG~A~I~l~p~~~~~~~~~l~~~~~~gt~~~~v~~s~dn~~~~es~i~~s~~~~~q~~~l~l~~ve~g~~e~~~~~~  160 (168)
T KOG1030|consen   81 DDFMGEATIPLKPLLEAQKMDYLKLELLTGTAIGKVLLSRDNCLNEESAIIRSFGKIVQDYILRLQNVECGELEIQLEWI  160 (168)
T ss_pred             ccccceeeeccHHHHHHhhhhccccccCCCcEeeEEEeccccccccceEEEecCChhhhhhccchhhcCcceeeeeeeEe
Confidence            999999999999999887765  247888999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCC
Q 031128          158 DIPGSRGL  165 (165)
Q Consensus       158 ~~~~~~~~  165 (165)
                      +.++..|+
T Consensus       161 ~~~~~~~~  168 (168)
T KOG1030|consen  161 KLPGSVGL  168 (168)
T ss_pred             cCcccccC
Confidence            99998875

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=100.00  E-value=3e-32  Score=186.91  Aligned_cols=144  Identities=61%  Similarity=1.024  Sum_probs=136.1

Q ss_pred             cEEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeE
Q 031128            5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMG   84 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG   84 (165)
                      .|.|.|+|++|++|+..+.+.+||||+++++++.++|++++++.||.|||+|.|.+.++...|.|+|||++.+++|++||
T Consensus         1 ~G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG   80 (145)
T cd04038           1 LGLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG   80 (145)
T ss_pred             CeEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence            48999999999999887777899999999999999999999999999999999999888777999999999999999999


Q ss_pred             EEEEechhhhhhhccc-ccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccceee
Q 031128           85 DAEFYITPFLEALKMR-LEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVG  148 (165)
Q Consensus        85 ~~~i~l~~l~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G  148 (165)
                      ++.+++.++.....+. +...+.|..+..|.|...|++++++++.+.+|++.++++++|+++++|
T Consensus        81 ~a~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~g  145 (145)
T cd04038          81 EAEIDLEPLVEAAKLDHLRDTPGGTQIKKVLPSVENCLASESHITWKDGKIVQDLVLKLRNVESG  145 (145)
T ss_pred             EEEEEHHHhhhhhhhhccccCCCCEEEEEEecCCCceEeccceEEEECCEEEEEEEEEecccccC
Confidence            9999999999988876 778889999999999999999999999999999999999999999987

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.96  E-value=1.3e-27  Score=159.09  Aligned_cols=115  Identities=18%  Similarity=0.409  Sum_probs=98.9

Q ss_pred             cEEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEecccccC-CCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCee
Q 031128            5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKN-NVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKM   83 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~-~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~i   83 (165)
                      .|.|.|+|++|++++..+.+.+||||++.+++++++|+++.+ +.||.|||+|.|.+......|.|+|||++.+++|++|
T Consensus         1 ~g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~i   80 (121)
T cd04016           1 VGRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERI   80 (121)
T ss_pred             CcEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceE
Confidence            379999999999887666789999999999999999999876 6999999999999976666799999999999999999


Q ss_pred             EEEEEechh-hhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeecc----ceeeeEEEEEEE
Q 031128           84 GDAEFYITP-FLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRN----VEVGEVKIQLEW  156 (165)
Q Consensus        84 G~~~i~l~~-l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~----~~~G~l~l~l~~  156 (165)
                      |.+.+++.. +..+..                                     .+.|++|..    ...|+|+|.|+|
T Consensus        81 G~~~i~l~~~~~~g~~-------------------------------------~~~W~~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          81 AWTHITIPESVFNGET-------------------------------------LDDWYSLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             EEEEEECchhccCCCC-------------------------------------ccccEeCcCccCCCCceEEEEEEeC
Confidence            999999963 444321                                     288998876    457999999986

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.94  E-value=9.3e-26  Score=151.80  Aligned_cols=88  Identities=26%  Similarity=0.528  Sum_probs=80.5

Q ss_pred             EEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeC------CCCcEEEEEEeCCCCCCC
Q 031128            8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISD------SNLPIKLTVYDKDTFSLD   80 (165)
Q Consensus         8 L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~------~~~~l~i~v~d~~~~~~d   80 (165)
                      ++|+|++|+||+..+ .+.+||||++.+++++++|++++++.||.|||.|.|.+..      ....|.|+|||++.+++|
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d   80 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD   80 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence            579999999999888 7889999999999999999999999999999999999876      245699999999999899


Q ss_pred             CeeEEEEEechhhhh
Q 031128           81 DKMGDAEFYITPFLE   95 (165)
Q Consensus        81 ~~iG~~~i~l~~l~~   95 (165)
                      ++||++.++++++..
T Consensus        81 ~~iG~~~i~l~~l~~   95 (126)
T cd08682          81 KFLGQVSIPLNDLDE   95 (126)
T ss_pred             ceeEEEEEEHHHhhc
Confidence            999999999998863

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.93  E-value=7.2e-25  Score=149.16  Aligned_cols=122  Identities=34%  Similarity=0.543  Sum_probs=104.6

Q ss_pred             cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCC
Q 031128            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLD   80 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~-~~l~i~v~d~~~~~~d   80 (165)
                      ..+|.|.|+|++|++|+..+ .+.+||||++.++++.++|++++++.||.|||.|.|.+.... ..|.|+|||++.+++|
T Consensus        12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d   91 (136)
T cd08375          12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPD   91 (136)
T ss_pred             CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCC
Confidence            46899999999999999988 889999999999999999999999999999999999997654 4599999999999899


Q ss_pred             CeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccceeeeEEEEEEE
Q 031128           81 DKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEW  156 (165)
Q Consensus        81 ~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~  156 (165)
                      ++||++.+++.++......                              ..+.  ...|+.+..+..|+|+|++++
T Consensus        92 ~~lG~~~i~l~~l~~~~~~------------------------------~~~~--~~~~~~~~~~~~g~i~l~~~~  135 (136)
T cd08375          92 DFLGRTEIRVADILKETKE------------------------------SKGP--ITKRLLLHEVPTGEVVVKLDL  135 (136)
T ss_pred             CeeEEEEEEHHHhcccccc------------------------------CCCc--EEEEeccccccceeEEEEEEe
Confidence            9999999999998763221                              0111  155777888889999999875

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.93  E-value=5.1e-25  Score=147.22  Aligned_cols=115  Identities=32%  Similarity=0.508  Sum_probs=100.9

Q ss_pred             EEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-eEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeE
Q 031128            7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-QKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMG   84 (165)
Q Consensus         7 ~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG   84 (165)
                      .|+|+|++|++|+..+ .+.+||||++.+++ ..++|+++.++.||.|||.|.|.+......|.|+|||++.+++|++||
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG   80 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG   80 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence            3789999999999888 78999999999987 578999999999999999999999776677999999999999999999


Q ss_pred             EEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccc----eeeeEEEEEEEEe
Q 031128           85 DAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNV----EVGEVKIQLEWID  158 (165)
Q Consensus        85 ~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~----~~G~l~l~l~~~~  158 (165)
                      ++.+++.++..+...                                     +.|++|.+.    ..|+|+|.+++.|
T Consensus        81 ~~~~~l~~l~~~~~~-------------------------------------~~~~~L~~~~~~~~~G~l~l~~~~~~  121 (121)
T cd04042          81 SAFVDLSTLELNKPT-------------------------------------EVKLKLEDPNSDEDLGYISLVVTLTP  121 (121)
T ss_pred             EEEEEHHHcCCCCCe-------------------------------------EEEEECCCCCCccCceEEEEEEEECC
Confidence            999999998865433                                     677887643    3799999999876

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.93  E-value=6.8e-25  Score=145.50  Aligned_cols=113  Identities=28%  Similarity=0.487  Sum_probs=100.5

Q ss_pred             EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCCeeE
Q 031128            7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDDKMG   84 (165)
Q Consensus         7 ~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~-~~~l~i~v~d~~~~~~d~~iG   84 (165)
                      .|+|+|++|++|+..+ .+.+||||+++++++.++|++++++.||.|||.|.|.+..+ ...|.|+|||++.++++++||
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG   80 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG   80 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence            3789999999999988 78899999999999999999999999999999999998765 456999999999998999999


Q ss_pred             EEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccceeeeEEEEEEEE
Q 031128           85 DAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWI  157 (165)
Q Consensus        85 ~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~  157 (165)
                      ++.++++++..+...                                     +.|++|... .|+++++++|+
T Consensus        81 ~~~~~l~~l~~~~~~-------------------------------------~~w~~L~~~-~G~~~~~~~~~  115 (116)
T cd08376          81 RCEIDLSALPREQTH-------------------------------------SLELELEDG-EGSLLLLLTLT  115 (116)
T ss_pred             EEEEeHHHCCCCCce-------------------------------------EEEEEccCC-CcEEEEEEEec
Confidence            999999987764332                                     899999864 69999999885

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.93  E-value=6.1e-25  Score=146.60  Aligned_cols=113  Identities=31%  Similarity=0.652  Sum_probs=100.4

Q ss_pred             EEEEEEEEEeeCCCCCCC-------CCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCC
Q 031128            6 GLLRVHVLRGVNLAVRDV-------VSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTF   77 (165)
Q Consensus         6 g~L~V~v~~a~~L~~~~~-------~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~-~~~l~i~v~d~~~~   77 (165)
                      |.|.|+|++|++|+..+.       +.+||||+++++++.++|++++++.+|.|||.|.|.+... ...|.|+|||++..
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~   80 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD   80 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence            679999999999998762       5789999999999999999999999999999999998753 45699999999988


Q ss_pred             CCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccceeeeEEEEEEE
Q 031128           78 SLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEW  156 (165)
Q Consensus        78 ~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~  156 (165)
                       ++++||.+.+++.++..+...                                     +.|++|.+..+|+|+++++|
T Consensus        81 -~~~~iG~~~i~l~~l~~~~~~-------------------------------------~~w~~L~~~~~G~~~~~~~~  121 (121)
T cd08391          81 -KDDFLGRLSIDLGSVEKKGFI-------------------------------------DEWLPLEDVKSGRLHLKLEW  121 (121)
T ss_pred             -CCCcEEEEEEEHHHhcccCcc-------------------------------------ceEEECcCCCCceEEEEEeC
Confidence             899999999999988764322                                     89999998889999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.93  E-value=7.2e-25  Score=146.84  Aligned_cols=91  Identities=27%  Similarity=0.471  Sum_probs=82.9

Q ss_pred             EEEEEEEEeeC---CCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCC----
Q 031128            7 LLRVHVLRGVN---LAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFS----   78 (165)
Q Consensus         7 ~L~V~v~~a~~---L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~----   78 (165)
                      .|.|+|++|+|   |+.++ .|.+||||++++++++.+|++++++.||+|||+|.|.+.++...|.|+|||++.++    
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~   80 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA   80 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence            38999999999   77777 88999999999999999999999999999999999999877778999999998874    


Q ss_pred             --CCCeeEEEEEechhhhhhh
Q 031128           79 --LDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        79 --~d~~iG~~~i~l~~l~~~~   97 (165)
                        +|++||++.+++..+..+.
T Consensus        81 ~~~dd~lG~~~i~l~~l~~~~  101 (126)
T cd08379          81 VQPDVLIGKVRIRLSTLEDDR  101 (126)
T ss_pred             CCCCceEEEEEEEHHHccCCC
Confidence              8999999999999887644

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.93  E-value=7.3e-25  Score=145.76  Aligned_cols=113  Identities=31%  Similarity=0.537  Sum_probs=96.9

Q ss_pred             EEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccC-CCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCCCe
Q 031128            6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKN-NVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLDDK   82 (165)
Q Consensus         6 g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~-~~~P~w~e~f~f~~~~~~-~~l~i~v~d~~~~~~d~~   82 (165)
                      |.|.|+|++|++|+..+ .+.+||||++.+++..++|+++.+ +.||.|||.|.|.+..+. ..|.|+|||++..+ |++
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~   79 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL   79 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence            68999999999999988 788999999999999999998765 689999999999997643 55999999999875 999


Q ss_pred             eEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccc--eeeeEEEEEEE
Q 031128           83 MGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNV--EVGEVKIQLEW  156 (165)
Q Consensus        83 iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~--~~G~l~l~l~~  156 (165)
                      ||++.+++.++..+...                                     +.|++|...  .+|+|+|+++|
T Consensus        80 iG~~~~~l~~~~~~~~~-------------------------------------~~w~~L~~~~~~~G~i~l~l~f  118 (118)
T cd08681          80 IGDTEVDLSPALKEGEF-------------------------------------DDWYELTLKGRYAGEVYLELTF  118 (118)
T ss_pred             eEEEEEecHHHhhcCCC-------------------------------------CCcEEeccCCcEeeEEEEEEEC
Confidence            99999999998764322                                     677777643  58999999986

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.92  E-value=2.5e-24  Score=144.99  Aligned_cols=88  Identities=31%  Similarity=0.478  Sum_probs=80.1

Q ss_pred             EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCC----CcEEEEEEeCCCCC-CC
Q 031128            7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSN----LPIKLTVYDKDTFS-LD   80 (165)
Q Consensus         7 ~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~----~~l~i~v~d~~~~~-~d   80 (165)
                      +|.|+|++|++|+..+ .+.+||||++.+++++++|+++.++.||.|||.|.|.+..+.    ..|.|+|||++.++ ++
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d   80 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR   80 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence            4899999999999888 788999999999999999999999999999999999987542    35999999999886 89


Q ss_pred             CeeEEEEEechhhh
Q 031128           81 DKMGDAEFYITPFL   94 (165)
Q Consensus        81 ~~iG~~~i~l~~l~   94 (165)
                      ++||++.++++++.
T Consensus        81 ~~lG~v~i~l~~l~   94 (127)
T cd04022          81 SFLGRVRISGTSFV   94 (127)
T ss_pred             CeeeEEEEcHHHcC
Confidence            99999999999886

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.92  E-value=6.3e-24  Score=142.87  Aligned_cols=115  Identities=23%  Similarity=0.354  Sum_probs=98.2

Q ss_pred             EEEEEEEeeCCCCCCCCCCCcEEEEEEC--CeEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeEE
Q 031128            8 LRVHVLRGVNLAVRDVVSSDPYVVIKMG--KQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGD   85 (165)
Q Consensus         8 L~V~v~~a~~L~~~~~~~~dpyv~v~~~--~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG~   85 (165)
                      |.|+|++|++|+. ..+.+||||++.++  .++++|++++++.||.|||.|.|.+......|.|+|||++..++|++||+
T Consensus         1 l~v~v~~A~~L~~-~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~   79 (126)
T cd08678           1 LLVKNIKANGLSE-AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGL   79 (126)
T ss_pred             CEEEEEEecCCCC-CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEE
Confidence            5799999999988 66889999999997  35789999999999999999999996555679999999999989999999


Q ss_pred             EEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeecc------ceeeeEEEEEEEEeC
Q 031128           86 AEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRN------VEVGEVKIQLEWIDI  159 (165)
Q Consensus        86 ~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~------~~~G~l~l~l~~~~~  159 (165)
                      +.+++.++......                                     ..|++|..      ...|+|+++++|.+.
T Consensus        80 ~~i~l~~l~~~~~~-------------------------------------~~~~~L~~~~~~~~~~~G~l~l~~~~~~~  122 (126)
T cd08678          80 AIVPFDELRKNPSG-------------------------------------RQIFPLQGRPYEGDSVSGSITVEFLFMEP  122 (126)
T ss_pred             EEEeHHHhccCCce-------------------------------------eEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence            99999998875432                                     45566653      258999999999876


Q ss_pred             C
Q 031128          160 P  160 (165)
Q Consensus       160 ~  160 (165)
                      +
T Consensus       123 ~  123 (126)
T cd08678         123 A  123 (126)
T ss_pred             c
Confidence            5

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.92  E-value=5.4e-24  Score=143.40  Aligned_cols=117  Identities=33%  Similarity=0.647  Sum_probs=98.8

Q ss_pred             EEEEEEEEEeeCCCCCC---CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeC-CCCcEEEEEEeCCCCCCCC
Q 031128            6 GLLRVHVLRGVNLAVRD---VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISD-SNLPIKLTVYDKDTFSLDD   81 (165)
Q Consensus         6 g~L~V~v~~a~~L~~~~---~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~-~~~~l~i~v~d~~~~~~d~   81 (165)
                      |.|+|+|++|++|+..+   .+.+||||++.++.+.++|++++++.||.|||.|.|.+.. ....|.|+|||++.+++++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~   80 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD   80 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            68999999999999876   4689999999999999999999999999999999999986 3566999999999998999


Q ss_pred             eeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccc-------eeeeEEEEE
Q 031128           82 KMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNV-------EVGEVKIQL  154 (165)
Q Consensus        82 ~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~-------~~G~l~l~l  154 (165)
                      +||++.+++.++......                                +  ..+.|++|...       .+|+|+|++
T Consensus        81 ~lG~~~i~l~~~~~~~~~--------------------------------~--~~~~w~~L~~~~~~~~~~~~G~i~l~~  126 (128)
T cd04024          81 YLGEFDIALEEVFADGKT--------------------------------G--QSDKWITLKSTRPGKTSVVSGEIHLQF  126 (128)
T ss_pred             cceEEEEEHHHhhccccc--------------------------------C--ccceeEEccCcccCccccccceEEEEE
Confidence            999999999998742110                                0  12567777654       489999999


Q ss_pred             EE
Q 031128          155 EW  156 (165)
Q Consensus       155 ~~  156 (165)
                      +|
T Consensus       127 ~~  128 (128)
T cd04024         127 SW  128 (128)
T ss_pred             EC
Confidence            87

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.92  E-value=6.7e-24  Score=141.75  Aligned_cols=89  Identities=19%  Similarity=0.374  Sum_probs=79.7

Q ss_pred             EEEEEEEeeCCCCCC--CCCCCcEEEEEECCe-EEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeE
Q 031128            8 LRVHVLRGVNLAVRD--VVSSDPYVVIKMGKQ-KLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMG   84 (165)
Q Consensus         8 L~V~v~~a~~L~~~~--~~~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG   84 (165)
                      |.|+|++|+||+..+  .+.+||||.+.++++ .++|++++++.||.|||+|.|.+......|.|.|||++.+++|++||
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG   81 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG   81 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence            789999999999874  578899999999865 57999999999999999999999765567999999999999999999


Q ss_pred             EEEEechhhhhh
Q 031128           85 DAEFYITPFLEA   96 (165)
Q Consensus        85 ~~~i~l~~l~~~   96 (165)
                      .+.++++++...
T Consensus        82 ~~~i~l~~l~~~   93 (121)
T cd08401          82 KVAIKKEDLHKY   93 (121)
T ss_pred             EEEEEHHHccCC
Confidence            999999988753

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.92  E-value=6.3e-24  Score=141.51  Aligned_cols=111  Identities=29%  Similarity=0.486  Sum_probs=97.1

Q ss_pred             EEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEecccccCCCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCCCe
Q 031128            8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMG---KQKLKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLDDK   82 (165)
Q Consensus         8 L~V~v~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~~~~~~-~~l~i~v~d~~~~~~d~~   82 (165)
                      |.|+|++|++|+..+ .+.+||||++.+.   ...++|++++++.||.|||+|.|.+.... ..|.|+|||++.+ +|++
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~   80 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH   80 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence            789999999999888 7889999999986   35789999999999999999999987543 3489999999998 8999


Q ss_pred             eEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccceeeeEEEEEEE
Q 031128           83 MGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEW  156 (165)
Q Consensus        83 iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~  156 (165)
                      ||++.+++.++..+...                                     +.|++|...++|+++++++.
T Consensus        81 iG~~~~~l~~l~~g~~~-------------------------------------~~~~~L~~~~~g~l~~~~~~  117 (119)
T cd04036          81 LGTVLFDVSKLKLGEKV-------------------------------------RVTFSLNPQGKEELEVEFLL  117 (119)
T ss_pred             cEEEEEEHHHCCCCCcE-------------------------------------EEEEECCCCCCceEEEEEEe
Confidence            99999999988765433                                     88999998889999998864

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.91  E-value=1.4e-23  Score=140.59  Aligned_cols=120  Identities=28%  Similarity=0.450  Sum_probs=99.5

Q ss_pred             cEEEEEEEEEeeCCCCCC--CCCCCcEEEEEECC--eEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCC
Q 031128            5 MGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMGK--QKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLD   80 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~--~~~~dpyv~v~~~~--~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d   80 (165)
                      +|.|.|+|++|++|+..+  .+.+||||++.+++  ..++|+++.++.+|.|||.|.|.+......|.|+|||++..++|
T Consensus         1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d   80 (124)
T cd04044           1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKD   80 (124)
T ss_pred             CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCC
Confidence            589999999999999655  45789999999987  78899999999999999999999885566799999999998899


Q ss_pred             CeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccceeeeEEEEEEEEe
Q 031128           81 DKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWID  158 (165)
Q Consensus        81 ~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~~  158 (165)
                      ++||.+.+++.++..+....                               .   ....+...+...|+|++.++|.|
T Consensus        81 ~~iG~~~~~l~~l~~~~~~~-------------------------------~---~~~~~~~~~k~~G~i~~~l~~~p  124 (124)
T cd04044          81 KLIGTAEFDLSSLLQNPEQE-------------------------------N---LTKNLLRNGKPVGELNYDLRFFP  124 (124)
T ss_pred             ceeEEEEEEHHHhccCcccc-------------------------------C---cchhhhcCCccceEEEEEEEeCC
Confidence            99999999999988754320                               0   01112334556899999999987

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.91  E-value=1.8e-23  Score=144.35  Aligned_cols=89  Identities=28%  Similarity=0.417  Sum_probs=80.6

Q ss_pred             EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccC-CCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCCCee
Q 031128            7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKN-NVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLDDKM   83 (165)
Q Consensus         7 ~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~-~~~P~w~e~f~f~~~~~~-~~l~i~v~d~~~~~~d~~i   83 (165)
                      .|.|+|++|++|+..+ .+.+||||++.++++.++|+++.+ +.||.|||.|.|.+.++. ..+.|+|||++..++|++|
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l   80 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL   80 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence            3889999999999988 789999999999999999999977 599999999999997654 4699999999988889999


Q ss_pred             EEEEEechhhhh
Q 031128           84 GDAEFYITPFLE   95 (165)
Q Consensus        84 G~~~i~l~~l~~   95 (165)
                      |++.++|+++..
T Consensus        81 G~v~i~L~~l~~   92 (150)
T cd04019          81 GRAVIPLNDIER   92 (150)
T ss_pred             EEEEEEHHHCcc
Confidence            999999998865

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.91  E-value=3.2e-23  Score=137.97  Aligned_cols=90  Identities=31%  Similarity=0.546  Sum_probs=82.8

Q ss_pred             EEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeE
Q 031128            6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMG   84 (165)
Q Consensus         6 g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG   84 (165)
                      |.|.|+|++|++|+..+ .+.+||||++++++..++|++++++.||.|||+|.|.+......|.|+|||++..+++++||
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG   80 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence            68999999999999888 77899999999999889999999999999999999998765677999999999988999999


Q ss_pred             EEEEechhhhh
Q 031128           85 DAEFYITPFLE   95 (165)
Q Consensus        85 ~~~i~l~~l~~   95 (165)
                      ++.+++.++..
T Consensus        81 ~~~~~l~~~~~   91 (119)
T cd08377          81 KVAIPLLSIKN   91 (119)
T ss_pred             EEEEEHHHCCC
Confidence            99999988754

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.90  E-value=7.6e-23  Score=136.70  Aligned_cols=88  Identities=30%  Similarity=0.529  Sum_probs=79.8

Q ss_pred             EEEEEEEeeCCCCCC-CCCCCcEEEEEECCe-EEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeEE
Q 031128            8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-KLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGD   85 (165)
Q Consensus         8 L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG~   85 (165)
                      |.|+|++|++|+..+ .+.+||||++.+++. ..+|+++.++.||.|||.|.|.+......|.|+|||++.+++|++||+
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~   81 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK   81 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence            789999999999988 889999999999875 469999999999999999999987666679999999999999999999


Q ss_pred             EEEechhhhh
Q 031128           86 AEFYITPFLE   95 (165)
Q Consensus        86 ~~i~l~~l~~   95 (165)
                      +.++++.+..
T Consensus        82 ~~~~~~~~~~   91 (121)
T cd04054          82 VSLTREVISA   91 (121)
T ss_pred             EEEcHHHhcc
Confidence            9999887754

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.90  E-value=8.8e-23  Score=142.18  Aligned_cols=115  Identities=24%  Similarity=0.440  Sum_probs=97.0

Q ss_pred             cEEEEEEEEEeeCCCCCC-------------------------------CCCCCcEEEEEECCeE-EecccccCCCCCeE
Q 031128            5 MGLLRVHVLRGVNLAVRD-------------------------------VVSSDPYVVIKMGKQK-LKTRVVKNNVNPEW   52 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~-------------------------------~~~~dpyv~v~~~~~~-~~T~~~~~~~~P~w   52 (165)
                      .|.|.|+|.+|++|+.++                               .+.+||||++++++.. .+|++++++.||.|
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W   85 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW   85 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence            589999999999999865                               3457999999999755 59999999999999


Q ss_pred             ecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCC
Q 031128           53 NEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDG  132 (165)
Q Consensus        53 ~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  132 (165)
                      ||+|.|.+......|.|+|||++.+ ++++||++.++++++..+...                                 
T Consensus        86 nE~F~~~~~~~~~~l~~~V~d~d~~-~~~~IG~~~i~l~~l~~g~~~---------------------------------  131 (158)
T cd04015          86 NESFHIYCAHYASHVEFTVKDNDVV-GAQLIGRAYIPVEDLLSGEPV---------------------------------  131 (158)
T ss_pred             ceEEEEEccCCCCEEEEEEEeCCCc-CCcEEEEEEEEhHHccCCCCc---------------------------------
Confidence            9999999877667799999999988 468999999999988764322                                 


Q ss_pred             cEEeeeeeeeccc------eeeeEEEEEEEE
Q 031128          133 KLVQNLFLRLRNV------EVGEVKIQLEWI  157 (165)
Q Consensus       133 ~~~~~~~~~l~~~------~~G~l~l~l~~~  157 (165)
                          +.|++|.+.      ..|+|+|+++|.
T Consensus       132 ----~~w~~L~~~~~~~~~~~~~l~v~~~f~  158 (158)
T cd04015         132 ----EGWLPILDSNGKPPKPGAKIRVSLQFT  158 (158)
T ss_pred             ----ceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence                778887542      268999999984

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.90  E-value=1.6e-22  Score=136.02  Aligned_cols=114  Identities=19%  Similarity=0.394  Sum_probs=93.7

Q ss_pred             cEEEEEEEEEeeCCCCCCCCCCCcEEEEEECCe-EEecccccCCCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCCCe
Q 031128            5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-KLKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLDDK   82 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~~~~~~-~~l~i~v~d~~~~~~d~~   82 (165)
                      ...|+|+|++|++|+..+  .+||||++.+++. ..+|++. ++.||.|||.|.|.+..+. ..+.|.|||++.+++|++
T Consensus         3 ~~~L~V~Vi~A~~L~~~~--~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~   79 (126)
T cd08400           3 VRSLQLNVLEAHKLPVKH--VPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSE   79 (126)
T ss_pred             eeEEEEEEEEeeCCCCCC--CCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCe
Confidence            467999999999998754  6899999999874 4688874 5899999999999876554 458999999999999999


Q ss_pred             eEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccc------eeeeEEEEEEE
Q 031128           83 MGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNV------EVGEVKIQLEW  156 (165)
Q Consensus        83 iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~------~~G~l~l~l~~  156 (165)
                      ||.+.++|+++..+...                                     +.|++|...      ..|+|+|.++|
T Consensus        80 iG~v~i~l~~l~~~~~~-------------------------------------~~W~~L~~~~~~~~~~~G~i~l~l~~  122 (126)
T cd08400          80 IAEVTVQLSKLQNGQET-------------------------------------DEWYPLSSASPLKGGEWGSLRIRARY  122 (126)
T ss_pred             EEEEEEEHhHccCCCcc-------------------------------------cEeEEcccCCCCCCCcCcEEEEEEEE
Confidence            99999999987663322                                     677777543      35999999999


Q ss_pred             Ee
Q 031128          157 ID  158 (165)
Q Consensus       157 ~~  158 (165)
                      .+
T Consensus       123 ~~  124 (126)
T cd08400         123 SH  124 (126)
T ss_pred             Ec
Confidence            75

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.90  E-value=1.9e-22  Score=135.80  Aligned_cols=116  Identities=20%  Similarity=0.282  Sum_probs=99.6

Q ss_pred             EEEeeCCCCCCCCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCCCCCCCeeEEEEE
Q 031128           12 VLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDTFSLDDKMGDAEF   88 (165)
Q Consensus        12 v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~~~~~d~~iG~~~i   88 (165)
                      |++|++|+. ..+.+||||++.+++.+++|++++++.||.|||.|.|.+...   ...|.|+|||++..++|++||++.+
T Consensus         2 vi~a~~L~~-~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~   80 (127)
T cd08373           2 VVSLKNLPG-LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATV   80 (127)
T ss_pred             eEEeeCCcc-cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEE
Confidence            689999988 667899999999999999999999999999999999999653   4569999999999989999999999


Q ss_pred             echhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccc----eeeeEEEEEEEEeCCCCCC
Q 031128           89 YITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNV----EVGEVKIQLEWIDIPGSRG  164 (165)
Q Consensus        89 ~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~----~~G~l~l~l~~~~~~~~~~  164 (165)
                      ++.++..+...                                     ..|++|.+.    ..|+|++.++|.|.++..|
T Consensus        81 ~l~~l~~~~~~-------------------------------------~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~~~  123 (127)
T cd08373          81 SLQDLVSEGLL-------------------------------------EVTEPLLDSNGRPTGATISLEVSYQPPDGAVG  123 (127)
T ss_pred             EhhHcccCCce-------------------------------------EEEEeCcCCCCCcccEEEEEEEEEeCCCCccC
Confidence            99988764332                                     667777533    2689999999999998876


Q ss_pred             C
Q 031128          165 L  165 (165)
Q Consensus       165 ~  165 (165)
                      +
T Consensus       124 ~  124 (127)
T cd08373         124 G  124 (127)
T ss_pred             C
Confidence            4

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.90  E-value=1.4e-22  Score=135.76  Aligned_cols=90  Identities=36%  Similarity=0.565  Sum_probs=82.0

Q ss_pred             EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCCCeeE
Q 031128            7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLDDKMG   84 (165)
Q Consensus         7 ~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~-~~l~i~v~d~~~~~~d~~iG   84 (165)
                      +|+|+|++|++|+..+ .+.+||||++++++..++|++++++.||.|||+|.|.+.... ..|.|+|||++.++++++||
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG   80 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence            4899999999999888 678999999999999999999999999999999999997654 45999999999998999999


Q ss_pred             EEEEechhhhhh
Q 031128           85 DAEFYITPFLEA   96 (165)
Q Consensus        85 ~~~i~l~~l~~~   96 (165)
                      ++.++++++...
T Consensus        81 ~~~~~l~~l~~~   92 (123)
T cd04025          81 KVVFSIQTLQQA   92 (123)
T ss_pred             EEEEEHHHcccC
Confidence            999999988653

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.90  E-value=9.5e-23  Score=138.27  Aligned_cols=120  Identities=26%  Similarity=0.486  Sum_probs=98.1

Q ss_pred             EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCe-------EEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCC
Q 031128            7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-------KLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFS   78 (165)
Q Consensus         7 ~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~-------~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~   78 (165)
                      .|+|+|++|++|+..+ .+.+||||++.+.+.       .++|++++++.||.|||+|.|.+......|.|+|||++.++
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~   80 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT   80 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence            4899999999999988 788999999999754       57899999999999999999998765667999999999999


Q ss_pred             CCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccc-----eeeeEEEE
Q 031128           79 LDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNV-----EVGEVKIQ  153 (165)
Q Consensus        79 ~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~-----~~G~l~l~  153 (165)
                      ++++||++.+++.++.......                               .......|++|+..     ..|+|++.
T Consensus        81 ~~~~iG~~~i~l~~l~~~~~~~-------------------------------~~~~~~~~~~l~~~~~~~~~~G~l~~~  129 (133)
T cd04033          81 RDDFLGQVEVPLNNLPTETPGN-------------------------------ERRYTFKDYLLRPRSSKSRVKGHLRLY  129 (133)
T ss_pred             CCCeeEEEEEEHHHCCCcCccc-------------------------------cccccchheeeeecCCCCcceeEEEEE
Confidence            9999999999999887643210                               00123667777642     48999999


Q ss_pred             EEEE
Q 031128          154 LEWI  157 (165)
Q Consensus       154 l~~~  157 (165)
                      ++|+
T Consensus       130 ~~~~  133 (133)
T cd04033         130 MAYL  133 (133)
T ss_pred             EeeC
Confidence            9874

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.90  E-value=2e-22  Score=136.55  Aligned_cols=116  Identities=22%  Similarity=0.402  Sum_probs=98.9

Q ss_pred             cEEEEEEEEEeeCCCCCCC-----------CCCCcEEEEEECCeE-EecccccCCCCCeEecEEEEEEeCCCCcEEEEEE
Q 031128            5 MGLLRVHVLRGVNLAVRDV-----------VSSDPYVVIKMGKQK-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVY   72 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~~-----------~~~dpyv~v~~~~~~-~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~   72 (165)
                      .|.|+|+|++|++|...+.           +.+||||++.++++. .+|+++.++.+|.|||+|.|.+. ....|.|.||
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~   81 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVF   81 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEE
Confidence            5899999999999987773           578999999999765 58999999999999999999996 4566999999


Q ss_pred             eCCCCCCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccceeeeEEE
Q 031128           73 DKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKI  152 (165)
Q Consensus        73 d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l  152 (165)
                      |++.++++++||++.++|+++.....                                   -..+.|++|.  +.|+|+|
T Consensus        82 d~~~~~~~~~iG~~~i~l~~l~~~~~-----------------------------------~~~~~w~~L~--~~G~l~l  124 (132)
T cd04014          82 HDAAIGPDDFVANCTISFEDLIQRGS-----------------------------------GSFDLWVDLE--PQGKLHV  124 (132)
T ss_pred             eCCCCCCCceEEEEEEEhHHhcccCC-----------------------------------CcccEEEEcc--CCcEEEE
Confidence            99988899999999999998876310                                   0128899997  7899999


Q ss_pred             EEEEEe
Q 031128          153 QLEWID  158 (165)
Q Consensus       153 ~l~~~~  158 (165)
                      +++|..
T Consensus       125 ~~~~~~  130 (132)
T cd04014         125 KIELKG  130 (132)
T ss_pred             EEEEec
Confidence            999864

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.90  E-value=7.7e-23  Score=135.92  Aligned_cols=91  Identities=19%  Similarity=0.262  Sum_probs=78.6

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCcEEEEEEC-----C--eEEecccccCCCCCeEecEEEEEEeCCC----CcEEEEEEeCC
Q 031128            7 LLRVHVLRGVNLAVRDVVSSDPYVVIKMG-----K--QKLKTRVVKNNVNPEWNEDLTLSISDSN----LPIKLTVYDKD   75 (165)
Q Consensus         7 ~L~V~v~~a~~L~~~~~~~~dpyv~v~~~-----~--~~~~T~~~~~~~~P~w~e~f~f~~~~~~----~~l~i~v~d~~   75 (165)
                      .|+|+|++|++|+..+.|.+||||++++.     .  ++++|+++.++.||+|||+|.|.+....    ..|.|.|||++
T Consensus         1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d   80 (120)
T cd08395           1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC   80 (120)
T ss_pred             CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence            48999999999988778889999999973     2  3568999999999999999999997432    24899999999


Q ss_pred             CCCCCCeeEEEEEechhhhhhh
Q 031128           76 TFSLDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        76 ~~~~d~~iG~~~i~l~~l~~~~   97 (165)
                      ..+++++||++.+++.++..+.
T Consensus        81 ~~~~dd~IG~~~l~l~~~~~~~  102 (120)
T cd08395          81 FARDDRLVGVTVLQLRDIAQAG  102 (120)
T ss_pred             ccCCCCEEEEEEEEHHHCcCCC
Confidence            8888999999999999888654

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.90  E-value=3.1e-22  Score=134.60  Aligned_cols=89  Identities=26%  Similarity=0.451  Sum_probs=81.6

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCe
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDK   82 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~   82 (165)
                      |...|+|+|++|++|...+ .+.+||||++.++++.++|++++++.||.|||.|.|.+......|.|+|||++.+ +|++
T Consensus         1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~   79 (126)
T cd04046           1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEF   79 (126)
T ss_pred             CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCc
Confidence            4578999999999999888 7899999999999999999999999999999999999877777799999999987 5899


Q ss_pred             eEEEEEechhh
Q 031128           83 MGDAEFYITPF   93 (165)
Q Consensus        83 iG~~~i~l~~l   93 (165)
                      ||.+.+++.+.
T Consensus        80 lG~~~~~l~~~   90 (126)
T cd04046          80 LGQATLSADPN   90 (126)
T ss_pred             eEEEEEecccC
Confidence            99999999764

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.89  E-value=9.3e-23  Score=136.39  Aligned_cols=92  Identities=26%  Similarity=0.346  Sum_probs=80.8

Q ss_pred             cEEEEEEEEEeeCCCCCCCCCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEeC----CCCcEEEEEEeCC
Q 031128            5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSISD----SNLPIKLTVYDKD   75 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~~----~~~~l~i~v~d~~   75 (165)
                      .+.|.|+|++|++|+..+.+.+||||++++.     ..+++|++++++.||.|||+|.|.+..    ....|.|+|||++
T Consensus        12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d   91 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD   91 (122)
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence            4789999999999998887789999999996     347899999999999999999998722    2345999999999


Q ss_pred             CCCCCCeeEEEEEechhhhhh
Q 031128           76 TFSLDDKMGDAEFYITPFLEA   96 (165)
Q Consensus        76 ~~~~d~~iG~~~i~l~~l~~~   96 (165)
                      .++++++||++.++|.++...
T Consensus        92 ~~~~~~~lG~~~i~l~~l~~~  112 (122)
T cd08381          92 SLVENEFLGGVCIPLKKLDLS  112 (122)
T ss_pred             CCcCCcEEEEEEEeccccccC
Confidence            999999999999999988754

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.89  E-value=1.1e-22  Score=133.93  Aligned_cols=92  Identities=17%  Similarity=0.303  Sum_probs=79.4

Q ss_pred             cccEEEEEEEEEeeCCCCCCCCCCCcEEEEEECC----eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCC
Q 031128            3 NLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK----QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKD   75 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~----~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~   75 (165)
                      ...+.|.|+|++|++|+ . .+.+||||++++..    .+.+|++.+++.||+|||+|.|.+...   ...|.|+|||+|
T Consensus        11 ~~~~~L~V~vikA~~L~-~-~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~D   88 (118)
T cd08677          11 KQKAELHVNILEAENIS-V-DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCD   88 (118)
T ss_pred             CcCCEEEEEEEEecCCC-C-CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCC
Confidence            35689999999999998 3 35689999999963    577999999999999999999998653   245999999999


Q ss_pred             CCCCCCeeEEEEEechhhhhh
Q 031128           76 TFSLDDKMGDAEFYITPFLEA   96 (165)
Q Consensus        76 ~~~~d~~iG~~~i~l~~l~~~   96 (165)
                      +++++++||++.++++++...
T Consensus        89 rfs~~d~IG~v~l~l~~~~~~  109 (118)
T cd08677          89 RFSRHSTLGELRLKLADVSMM  109 (118)
T ss_pred             CCCCCceEEEEEEccccccCC
Confidence            999999999999999876443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.89  E-value=2.1e-22  Score=134.53  Aligned_cols=113  Identities=27%  Similarity=0.456  Sum_probs=93.6

Q ss_pred             EEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCCeeEEE
Q 031128            8 LRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDDKMGDA   86 (165)
Q Consensus         8 L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~-~~~l~i~v~d~~~~~~d~~iG~~   86 (165)
                      |.|+|++|++|+..   .+||||++.+++...+|++++++.||.|||+|.|.+... ...|.|+|||++.. ++++||++
T Consensus         2 L~V~Vi~a~~L~~~---~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~~   77 (121)
T cd08378           2 LYVRVVKARGLPAN---SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGGV   77 (121)
T ss_pred             EEEEEEEecCCCcc---cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeeeE
Confidence            78999999999887   689999999999999999999999999999999998764 45599999999987 89999999


Q ss_pred             EEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccce----eeeEEEEEEE
Q 031128           87 EFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVE----VGEVKIQLEW  156 (165)
Q Consensus        87 ~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~----~G~l~l~l~~  156 (165)
                      .++++++......      .+                          -..+.|++|....    +|+|+|.+.|
T Consensus        78 ~i~l~~l~~~~~~------~~--------------------------~~~~~W~~L~~~~~~~~~G~i~l~~~~  119 (121)
T cd08378          78 CFDLSEVPTRVPP------DS--------------------------PLAPQWYRLEDKKGGRVGGELMLAVWF  119 (121)
T ss_pred             EEEhHhCcCCCCC------CC--------------------------CCCcceEEccCCCCCccceEEEEEEEe
Confidence            9999987642210      00                          0126788887654    6999999976

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.89  E-value=3.6e-22  Score=130.74  Aligned_cols=94  Identities=24%  Similarity=0.489  Sum_probs=83.5

Q ss_pred             EEEEEEEEEeeCCCCCC-C----CCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCC--CcEEEEEEeCCCCC
Q 031128            6 GLLRVHVLRGVNLAVRD-V----VSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSN--LPIKLTVYDKDTFS   78 (165)
Q Consensus         6 g~L~V~v~~a~~L~~~~-~----~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~--~~l~i~v~d~~~~~   78 (165)
                      |.|.|+|++|++|+..+ .    +.+||||+++++++.++|++++++.||+|||.|.|.+....  ..|.|+|||++.++
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~   80 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS   80 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence            68999999999999875 1    35899999999999999999999999999999999986543  35899999999999


Q ss_pred             CCCeeEEEEEechhhhhhhcc
Q 031128           79 LDDKMGDAEFYITPFLEALKM   99 (165)
Q Consensus        79 ~d~~iG~~~i~l~~l~~~~~~   99 (165)
                      +|++||++.++|+++..+...
T Consensus        81 ~dd~IG~~~l~L~~l~~~~~~  101 (108)
T cd04039          81 FNDYVATGSLSVQELLNAAPQ  101 (108)
T ss_pred             CCcceEEEEEEHHHHHhhCCC
Confidence            999999999999999886543

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.88  E-value=4e-22  Score=136.53  Aligned_cols=91  Identities=23%  Similarity=0.395  Sum_probs=79.8

Q ss_pred             cEEEEEEEEEeeCCCCCC--CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEE-eCCC
Q 031128            5 MGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVY-DKDT   76 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~--~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~-d~~~   76 (165)
                      .|.|.|+|++|+||++.+  .+.+||||++++..     .+++|++++++.||+|||+|.|.+...+..|.|+|| |++.
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~  107 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGR  107 (146)
T ss_pred             CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCC
Confidence            478999999999998864  67899999999952     377999999999999999999999855567999999 6888


Q ss_pred             CCCCCeeEEEEEechhhhh
Q 031128           77 FSLDDKMGDAEFYITPFLE   95 (165)
Q Consensus        77 ~~~d~~iG~~~i~l~~l~~   95 (165)
                      ++++++||++.|+|+++..
T Consensus       108 ~~~~~~iG~~~i~L~~l~~  126 (146)
T cd04028         108 MDKKVFMGVAQILLDDLDL  126 (146)
T ss_pred             CCCCceEEEEEEEcccccC
Confidence            8899999999999998754

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.88  E-value=1.1e-21  Score=132.09  Aligned_cols=89  Identities=30%  Similarity=0.545  Sum_probs=79.2

Q ss_pred             EEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCC-------
Q 031128            6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTF-------   77 (165)
Q Consensus         6 g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~-------   77 (165)
                      +.|+|+|++|++|+..+ .+.+||||++.+++..++|+++.++.+|.|||.|.|.+..+...|.|+|||++..       
T Consensus         1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~   80 (127)
T cd04027           1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQ   80 (127)
T ss_pred             CeEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccccce
Confidence            36899999999999988 7889999999999889999999999999999999999876666799999999852       


Q ss_pred             ----CCCCeeEEEEEechhhh
Q 031128           78 ----SLDDKMGDAEFYITPFL   94 (165)
Q Consensus        78 ----~~d~~iG~~~i~l~~l~   94 (165)
                          +++++||.+.+++.++.
T Consensus        81 ~~~~~~~~~iG~~~i~l~~~~  101 (127)
T cd04027          81 KFTRESDDFLGQTIIEVRTLS  101 (127)
T ss_pred             eccccCCCcceEEEEEhHHcc
Confidence                47999999999998753

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.88  E-value=1.5e-21  Score=127.35  Aligned_cols=87  Identities=25%  Similarity=0.471  Sum_probs=79.2

Q ss_pred             EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCCCeeE
Q 031128            7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLDDKMG   84 (165)
Q Consensus         7 ~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~-~~l~i~v~d~~~~~~d~~iG   84 (165)
                      .|.|+|++|++|+..+ .+.+||||+++++++.++|+++.++.||.|||.|.|.+..+. ..|.|+|||++.   +++||
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG   77 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG   77 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence            3889999999999887 788999999999999999999999999999999999998754 459999999885   88999


Q ss_pred             EEEEechhhhhh
Q 031128           85 DAEFYITPFLEA   96 (165)
Q Consensus        85 ~~~i~l~~l~~~   96 (165)
                      ++.++|.++...
T Consensus        78 ~~~i~l~~l~~~   89 (105)
T cd04050          78 SLTLPLSELLKE   89 (105)
T ss_pred             EEEEEHHHhhcc
Confidence            999999998764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.88  E-value=5.4e-22  Score=133.24  Aligned_cols=96  Identities=32%  Similarity=0.417  Sum_probs=82.7

Q ss_pred             CcccEEEEEEEEEeeCCCCCC--CCCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEE
Q 031128            2 ENLMGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTV   71 (165)
Q Consensus         2 ~~~~g~L~V~v~~a~~L~~~~--~~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v   71 (165)
                      +...+.|.|+|++|+||+..+  .+.+||||++++.     ..+++|++++++.||.|||+|.|.+...   ...|.|+|
T Consensus        11 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V   90 (125)
T cd04029          11 DYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSV   90 (125)
T ss_pred             ECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence            346789999999999999876  4789999999985     2357999999999999999999998653   34599999


Q ss_pred             EeCCCCCCCCeeEEEEEechhhhhhh
Q 031128           72 YDKDTFSLDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        72 ~d~~~~~~d~~iG~~~i~l~~l~~~~   97 (165)
                      ||++.++++++||++.+++.++....
T Consensus        91 ~d~~~~~~~~~lG~~~i~l~~~~~~~  116 (125)
T cd04029          91 WHYDRFGRNTFLGEVEIPLDSWNFDS  116 (125)
T ss_pred             EECCCCCCCcEEEEEEEeCCcccccC
Confidence            99999999999999999999876643

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.88  E-value=3.8e-21  Score=129.23  Aligned_cols=115  Identities=27%  Similarity=0.454  Sum_probs=95.7

Q ss_pred             EEEEEEEEeeCCCCCC-CCCCCcEEEEEECC---eEEecccccCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCC
Q 031128            7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK---QKLKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDD   81 (165)
Q Consensus         7 ~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~---~~~~T~~~~~~~~P~w~e~f~f~~~~~-~~~l~i~v~d~~~~~~d~   81 (165)
                      .|+|+|++|++|+..+ .+.+||||++.+.+   ..++|++++++.||.|||+|.|.+... ...|.|+|||++.+++++
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~   81 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD   81 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            5899999999999988 78899999999764   367999999999999999999999764 355999999999988999


Q ss_pred             eeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccceeeeEEEEEEEE
Q 031128           82 KMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWI  157 (165)
Q Consensus        82 ~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~  157 (165)
                      +||++.++|.++.....                                 | ...+.|++|.  ++|++++++.+.
T Consensus        82 ~iG~~~i~l~~~~~~~~---------------------------------~-~~~~~w~~l~--~~g~i~l~~~~~  121 (126)
T cd04043          82 LCGRASLKLDPKRFGDD---------------------------------G-LPREIWLDLD--TQGRLLLRVSME  121 (126)
T ss_pred             eEEEEEEecCHHHcCCC---------------------------------C-CCceEEEEcC--CCCeEEEEEEEe
Confidence            99999999987654210                                 0 1137899997  489999998764

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.87  E-value=9.6e-22  Score=129.25  Aligned_cols=88  Identities=34%  Similarity=0.623  Sum_probs=80.4

Q ss_pred             EEEEEEEeeCCCCCC--CCCCCcEEEEEECCeEEecccccCCCCCeE-ecEEEEEEeCC---CCcEEEEEEeCCCCCCCC
Q 031128            8 LRVHVLRGVNLAVRD--VVSSDPYVVIKMGKQKLKTRVVKNNVNPEW-NEDLTLSISDS---NLPIKLTVYDKDTFSLDD   81 (165)
Q Consensus         8 L~V~v~~a~~L~~~~--~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w-~e~f~f~~~~~---~~~l~i~v~d~~~~~~d~   81 (165)
                      |.|+|++|++|+..+  .+.+||||+++++++.++|++++++.||.| ||.|.|.+...   +..|.|+|||++.+++++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~   80 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND   80 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence            689999999999876  578999999999999999999999999999 99999998754   256999999999999999


Q ss_pred             eeEEEEEechhhhh
Q 031128           82 KMGDAEFYITPFLE   95 (165)
Q Consensus        82 ~iG~~~i~l~~l~~   95 (165)
                      +||++.+++.++..
T Consensus        81 ~iG~~~~~l~~l~~   94 (110)
T cd08688          81 AIGKVYIDLNPLLL   94 (110)
T ss_pred             ceEEEEEeHHHhcc
Confidence            99999999999877

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.87  E-value=9.3e-22  Score=135.33  Aligned_cols=89  Identities=19%  Similarity=0.319  Sum_probs=77.5

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeC-----------C-----CC
Q 031128            7 LLRVHVLRGVNLAVRDVVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISD-----------S-----NL   65 (165)
Q Consensus         7 ~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~-----------~-----~~   65 (165)
                      .|.|+|++|++|+. ..|.+||||++.+..     .+.+|++++++.||+|||.|.|.+..           +     ..
T Consensus         1 kL~V~Vi~ArnL~~-~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~   79 (148)
T cd04010           1 KLSVRVIECSDLAL-KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL   79 (148)
T ss_pred             CEEEEEEeCcCCCC-CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence            48999999999988 557899999999975     57799999999999999999999851           1     13


Q ss_pred             cEEEEEEeCCCCCCCCeeEEEEEechhhhhh
Q 031128           66 PIKLTVYDKDTFSLDDKMGDAEFYITPFLEA   96 (165)
Q Consensus        66 ~l~i~v~d~~~~~~d~~iG~~~i~l~~l~~~   96 (165)
                      .|.|.|||++.+++|+|||++.|++..+..+
T Consensus        80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~  110 (148)
T cd04010          80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQ  110 (148)
T ss_pred             EEEEEEEcCCCCCCCceeEEEEEeccccccc
Confidence            4899999999988999999999999988764

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.87  E-value=2.4e-21  Score=128.72  Aligned_cols=88  Identities=23%  Similarity=0.373  Sum_probs=78.8

Q ss_pred             cEEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeE
Q 031128            5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMG   84 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG   84 (165)
                      ++.|.|+|++|++|+..+  ..||||++++++++.+|++.++ .||.|||.|.|.+.+.+..|.|+|||++.+ +|++||
T Consensus         1 m~~L~V~Vv~Ar~L~~~~--~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG   76 (127)
T cd08394           1 MSLLCVLVKKAKLDGAPD--KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVG   76 (127)
T ss_pred             CceEEEEEEEeeCCCCCC--CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceE
Confidence            468999999999997654  4589999999999999999987 499999999999987777799999999976 999999


Q ss_pred             EEEEechhhhhh
Q 031128           85 DAEFYITPFLEA   96 (165)
Q Consensus        85 ~~~i~l~~l~~~   96 (165)
                      ++.|+|+++..+
T Consensus        77 ~v~i~L~~v~~~   88 (127)
T cd08394          77 TVWIPLSTIRQS   88 (127)
T ss_pred             EEEEEhHHcccC
Confidence            999999998764

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.87  E-value=4.4e-21  Score=130.50  Aligned_cols=119  Identities=18%  Similarity=0.315  Sum_probs=94.8

Q ss_pred             EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCC----------CCcEEEEEEeCC
Q 031128            7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDS----------NLPIKLTVYDKD   75 (165)
Q Consensus         7 ~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~----------~~~l~i~v~d~~   75 (165)
                      .|+|+|++|++|+..+ .+.+||||++.++++.++|++++++.||.|||.|.|.+...          ...|.|+|||++
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d   81 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD   81 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence            5899999999999988 78999999999999999999999999999999999975321          134899999999


Q ss_pred             CCCCCCeeEEEEEe-chhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccc--eeeeEEE
Q 031128           76 TFSLDDKMGDAEFY-ITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNV--EVGEVKI  152 (165)
Q Consensus        76 ~~~~d~~iG~~~i~-l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~--~~G~l~l  152 (165)
                      ..++|++||++.+. +..+....        .+                          -....|++|...  ..|+|.|
T Consensus        82 ~~~~d~~iG~~~i~~~~~~~~~~--------~~--------------------------~~~~~W~~L~~~~~~~Geil~  127 (135)
T cd04017          82 SVGKDEFLGRSVAKPLVKLDLEE--------DF--------------------------PPKLQWFPIYKGGQSAGELLA  127 (135)
T ss_pred             CCCCCccceEEEeeeeeecccCC--------CC--------------------------CCCceEEEeecCCCchhheeE
Confidence            99899999999874 32222110        00                          112678887643  4899999


Q ss_pred             EEEEEeC
Q 031128          153 QLEWIDI  159 (165)
Q Consensus       153 ~l~~~~~  159 (165)
                      .++++++
T Consensus       128 ~~~~~~~  134 (135)
T cd04017         128 AFELIEV  134 (135)
T ss_pred             EeEEEEe
Confidence            9999875

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.87  E-value=3.9e-21  Score=128.76  Aligned_cols=89  Identities=29%  Similarity=0.491  Sum_probs=79.9

Q ss_pred             EEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-CeEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCC--CCe
Q 031128            7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMG-KQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSL--DDK   82 (165)
Q Consensus         7 ~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~-~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~--d~~   82 (165)
                      .|+|+|++|++|+..+ .+.+||||++.++ .+.++|++++++.||.|||.|.|.+.. ...|.|+|||++.+++  |++
T Consensus         1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~   79 (123)
T cd08382           1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGF   79 (123)
T ss_pred             CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCce
Confidence            3789999999999888 7899999999996 678899999999999999999999965 6679999999998865  589


Q ss_pred             eEEEEEechhhhhh
Q 031128           83 MGDAEFYITPFLEA   96 (165)
Q Consensus        83 iG~~~i~l~~l~~~   96 (165)
                      ||++.+++.++...
T Consensus        80 lG~~~i~l~~l~~~   93 (123)
T cd08382          80 LGCVRIRANAVLPL   93 (123)
T ss_pred             EeEEEEEHHHcccc
Confidence            99999999998763

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.87  E-value=1.8e-21  Score=130.53  Aligned_cols=95  Identities=25%  Similarity=0.483  Sum_probs=83.5

Q ss_pred             cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCC
Q 031128            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG---KQKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKD   75 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~   75 (165)
                      ...|.|.|+|++|++|+..+ .+.+||||++.+.   ...++|++++++.||.|||.|.|.+...   ...|.|+|||++
T Consensus        13 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~   92 (124)
T cd08387          13 KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFD   92 (124)
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECC
Confidence            45789999999999999888 7889999999984   3568999999999999999999998653   346999999999


Q ss_pred             CCCCCCeeEEEEEechhhhhhh
Q 031128           76 TFSLDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        76 ~~~~d~~iG~~~i~l~~l~~~~   97 (165)
                      .++++++||++.++++++..+.
T Consensus        93 ~~~~~~~iG~~~i~l~~~~~~~  114 (124)
T cd08387          93 QFSRDECIGVVELPLAEVDLSE  114 (124)
T ss_pred             CCCCCceeEEEEEecccccCCC
Confidence            9989999999999999887543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.87  E-value=8.4e-22  Score=132.34  Aligned_cols=93  Identities=29%  Similarity=0.437  Sum_probs=81.1

Q ss_pred             ccEEEEEEEEEeeCCCCCC-C-CCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEe
Q 031128            4 LMGLLRVHVLRGVNLAVRD-V-VSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYD   73 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~-~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d   73 (165)
                      ..+.|.|+|++|+||++.+ . +.+||||++++.     ..+++|++++++.||.|||.|.|.+...   ...|.|+|||
T Consensus        13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d   92 (125)
T cd08393          13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWH   92 (125)
T ss_pred             CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEe
Confidence            4578999999999999988 4 789999999985     2457999999999999999999998642   3469999999


Q ss_pred             CCCCCCCCeeEEEEEechhhhhh
Q 031128           74 KDTFSLDDKMGDAEFYITPFLEA   96 (165)
Q Consensus        74 ~~~~~~d~~iG~~~i~l~~l~~~   96 (165)
                      ++.++++++||++.++|.++...
T Consensus        93 ~~~~~~~~~iG~~~i~L~~~~~~  115 (125)
T cd08393          93 RDSLGRNSFLGEVEVDLGSWDWS  115 (125)
T ss_pred             CCCCCCCcEeEEEEEecCccccC
Confidence            99999999999999999987553

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.87  E-value=2e-21  Score=127.94  Aligned_cols=91  Identities=30%  Similarity=0.575  Sum_probs=81.0

Q ss_pred             EEEEEEEEEeeCCCCCC-C-CCCCcEEEEEEC---CeEEecccccCCCCCeEecEEEEEEeCC----CCcEEEEEEeCCC
Q 031128            6 GLLRVHVLRGVNLAVRD-V-VSSDPYVVIKMG---KQKLKTRVVKNNVNPEWNEDLTLSISDS----NLPIKLTVYDKDT   76 (165)
Q Consensus         6 g~L~V~v~~a~~L~~~~-~-~~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~~~~~----~~~l~i~v~d~~~   76 (165)
                      |.|.|+|++|++|+..+ . +.+||||++++.   ...++|++++++.||.|||.|.|.+...    ...|.|+|||++.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            68999999999999888 5 899999999985   3467999999999999999999988653    3469999999999


Q ss_pred             CCCCCeeEEEEEechhhhhh
Q 031128           77 FSLDDKMGDAEFYITPFLEA   96 (165)
Q Consensus        77 ~~~d~~iG~~~i~l~~l~~~   96 (165)
                      +++|++||++.+++.++...
T Consensus        81 ~~~dd~lG~~~i~l~~l~~~  100 (111)
T cd04041          81 FTADDRLGRVEIDLKELIED  100 (111)
T ss_pred             CCCCCcceEEEEEHHHHhcC
Confidence            99999999999999999853

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.86  E-value=4.3e-21  Score=128.66  Aligned_cols=95  Identities=29%  Similarity=0.437  Sum_probs=82.4

Q ss_pred             cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCC
Q 031128            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG---KQKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKD   75 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~   75 (165)
                      ...+.|.|+|++|++|+..+ .+.+||||++.+.   ...++|++++++.||.|||.|.|.+...   ...|.|+|||++
T Consensus        13 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d   92 (124)
T cd08385          13 FQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFD   92 (124)
T ss_pred             CCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence            35689999999999999888 7789999999985   3467999999999999999999998642   346999999999


Q ss_pred             CCCCCCeeEEEEEechhhhhhh
Q 031128           76 TFSLDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        76 ~~~~d~~iG~~~i~l~~l~~~~   97 (165)
                      .++++++||++.++++++..+.
T Consensus        93 ~~~~~~~lG~~~i~l~~~~~~~  114 (124)
T cd08385          93 RFSKHDLIGEVRVPLLTVDLGH  114 (124)
T ss_pred             CCCCCceeEEEEEecCcccCCC
Confidence            9989999999999999875533

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.86  E-value=7.5e-21  Score=125.19  Aligned_cols=100  Identities=20%  Similarity=0.388  Sum_probs=86.9

Q ss_pred             CCCCCcEEEEEECCe-EEecccccCCCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCCCeeEEEEEechhhhhhhccc
Q 031128           23 VVSSDPYVVIKMGKQ-KLKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMR  100 (165)
Q Consensus        23 ~~~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~~~~~~-~~l~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~  100 (165)
                      .|.+||||++.++++ ..+|++++++.||.|||.|.|.+.++. ..|.|+|||++.+ ++++||.+.++|+++...... 
T Consensus        10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~-   87 (111)
T cd04052          10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSV-   87 (111)
T ss_pred             CCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhc-
Confidence            678999999999874 579999999999999999999997654 4599999999999 999999999999998653211 


Q ss_pred             ccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccceeeeEEEEEEEEeC
Q 031128          101 LEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWIDI  159 (165)
Q Consensus       101 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~~~  159 (165)
                                                         .+.|++|.+.+.|+|+++++|.|.
T Consensus        88 -----------------------------------~~~w~~L~~~~~G~i~~~~~~~p~  111 (111)
T cd04052          88 -----------------------------------GQQWFPLSGNGQGRIRISALWKPV  111 (111)
T ss_pred             -----------------------------------cceeEECCCCCCCEEEEEEEEecC
Confidence                                               278999998889999999999985

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.86  E-value=1.5e-20  Score=125.34  Aligned_cols=91  Identities=29%  Similarity=0.523  Sum_probs=83.4

Q ss_pred             EEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-eEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCee
Q 031128            6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-QKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKM   83 (165)
Q Consensus         6 g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~i   83 (165)
                      |.|.|+|++|++|+..+ .+.+||||++.+++ ..++|+++.++.||.|||.|.|.+..+...|.|+|||++.+++|++|
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I   80 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL   80 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence            68999999999999988 78999999999976 56899999999999999999999877767899999999999999999


Q ss_pred             EEEEEechhhhhh
Q 031128           84 GDAEFYITPFLEA   96 (165)
Q Consensus        84 G~~~i~l~~l~~~   96 (165)
                      |++.+++.++..+
T Consensus        81 G~~~~~l~~l~~~   93 (120)
T cd04045          81 GSVEINVSDLIKK   93 (120)
T ss_pred             eEEEEeHHHhhCC
Confidence            9999999998875

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.86  E-value=2.1e-20  Score=125.35  Aligned_cols=92  Identities=34%  Similarity=0.562  Sum_probs=83.2

Q ss_pred             EEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccC-CCCCeEecEEEEEEeCC----CCcEEEEEEeCCCCCC
Q 031128            6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKN-NVNPEWNEDLTLSISDS----NLPIKLTVYDKDTFSL   79 (165)
Q Consensus         6 g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~-~~~P~w~e~f~f~~~~~----~~~l~i~v~d~~~~~~   79 (165)
                      |.|.|+|++|++|+..+ .+.+||||+++++++.++|++..+ +.||.|||.|.|.+..+    ...|.|+|||.+.+++
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   80 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD   80 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence            68999999999999887 778999999999998899998875 89999999999999876    3569999999999989


Q ss_pred             CCeeEEEEEechhhhhhh
Q 031128           80 DDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        80 d~~iG~~~i~l~~l~~~~   97 (165)
                      +++||++.+++.++..+.
T Consensus        81 d~~iG~~~i~l~~l~~~~   98 (124)
T cd04049          81 DDFIGEATIHLKGLFEEG   98 (124)
T ss_pred             CCeEEEEEEEhHHhhhCC
Confidence            999999999999998744

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.86  E-value=6.2e-21  Score=127.97  Aligned_cols=92  Identities=28%  Similarity=0.387  Sum_probs=81.0

Q ss_pred             cccEEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeC--CCCcEEEEEEeCCCCCCC
Q 031128            3 NLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISD--SNLPIKLTVYDKDTFSLD   80 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~--~~~~l~i~v~d~~~~~~d   80 (165)
                      ..+|.|.|+|++|++|+....+.+||||+++++++.++|++++++.||+|||+|.|....  ....|.|+|||++.+++|
T Consensus        25 ~~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~d  104 (127)
T cd04032          25 RGLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDD  104 (127)
T ss_pred             CCcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCC
Confidence            456999999999999985337789999999999999999999999999999999997533  345699999999999999


Q ss_pred             CeeEEEEEechhhh
Q 031128           81 DKMGDAEFYITPFL   94 (165)
Q Consensus        81 ~~iG~~~i~l~~l~   94 (165)
                      ++||++.++|....
T Consensus       105 d~IG~~~i~l~~~~  118 (127)
T cd04032         105 DLLGTCSVVPEAGV  118 (127)
T ss_pred             CeeEEEEEEecCCc
Confidence            99999999998554

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.86  E-value=7.6e-21  Score=127.54  Aligned_cols=90  Identities=29%  Similarity=0.452  Sum_probs=79.3

Q ss_pred             cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeC----CCCcEEEEEE
Q 031128            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISD----SNLPIKLTVY   72 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~----~~~~l~i~v~   72 (165)
                      ...+.|.|+|++|++|+..+ .+.+||||++.+..     ..++|++++++.||.|||+|.|.+..    ....|.|+||
T Consensus        13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~   92 (125)
T cd04031          13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW   92 (125)
T ss_pred             CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence            34688999999999999888 77899999999864     57799999999999999999998644    2356999999


Q ss_pred             eCCCCCCCCeeEEEEEechh
Q 031128           73 DKDTFSLDDKMGDAEFYITP   92 (165)
Q Consensus        73 d~~~~~~d~~iG~~~i~l~~   92 (165)
                      |++.++++++||++.++|.+
T Consensus        93 d~~~~~~~~~iG~~~i~l~~  112 (125)
T cd04031          93 DYDRDGENDFLGEVVIDLAD  112 (125)
T ss_pred             eCCCCCCCcEeeEEEEeccc
Confidence            99999899999999999987

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.85  E-value=4.3e-21  Score=127.74  Aligned_cols=93  Identities=22%  Similarity=0.344  Sum_probs=79.6

Q ss_pred             ccEEEEEEEEEeeCCCCCCCCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCCC--CcEEEEEEeCCC
Q 031128            4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDSN--LPIKLTVYDKDT   76 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~~--~~l~i~v~d~~~   76 (165)
                      ..+.|.|+|++|+||+..+.+.+||||++++..     .+.+|++++++.||.|||+|.|.+....  ..|.|+|||.+.
T Consensus        10 ~~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~   89 (119)
T cd08685          10 QNRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS   89 (119)
T ss_pred             cCCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence            357899999999999988877899999999863     3668999999999999999999986532  458999999988


Q ss_pred             CC-CCCeeEEEEEechhhhhh
Q 031128           77 FS-LDDKMGDAEFYITPFLEA   96 (165)
Q Consensus        77 ~~-~d~~iG~~~i~l~~l~~~   96 (165)
                      .+ ++++||.+.+++.++..+
T Consensus        90 ~~~~~~~lG~~~i~l~~~~~~  110 (119)
T cd08685          90 KSRDSGLLGCMSFGVKSIVNQ  110 (119)
T ss_pred             CcCCCEEEEEEEecHHHhccC
Confidence            75 478999999999988643

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.85  E-value=6.6e-21  Score=128.35  Aligned_cols=92  Identities=24%  Similarity=0.307  Sum_probs=80.8

Q ss_pred             ccEEEEEEEEEeeCCCCCC-C-CCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEe
Q 031128            4 LMGLLRVHVLRGVNLAVRD-V-VSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYD   73 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~-~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d   73 (165)
                      ..+.|.|+|++|+||++.+ . +.+||||++++.     ..++||++++++.||+|||+|.|.+...   ...|.+.|||
T Consensus        13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~   92 (128)
T cd08392          13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWH   92 (128)
T ss_pred             CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEe
Confidence            4578999999999999887 4 889999999986     2367999999999999999999998653   3469999999


Q ss_pred             CCCCCCCCeeEEEEEechhhhh
Q 031128           74 KDTFSLDDKMGDAEFYITPFLE   95 (165)
Q Consensus        74 ~~~~~~d~~iG~~~i~l~~l~~   95 (165)
                      .+.++++++||++.|+|.++.-
T Consensus        93 ~~~~~~~~~lG~~~i~L~~~~~  114 (128)
T cd08392          93 SRTLKRRVFLGEVLIPLADWDF  114 (128)
T ss_pred             CCCCcCcceEEEEEEEcCCccc
Confidence            9999999999999999988754

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.85  E-value=1.2e-20  Score=126.93  Aligned_cols=95  Identities=23%  Similarity=0.293  Sum_probs=82.1

Q ss_pred             cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEe
Q 031128            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYD   73 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d   73 (165)
                      ...+.|.|+|++|+||+..+ .+.+||||++.+.     ...++|++++++.||.|||+|.|.+...   ...|.+.|||
T Consensus        13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~   92 (127)
T cd04030          13 SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKN   92 (127)
T ss_pred             CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEE
Confidence            34688999999999999988 7899999999986     3578999999999999999999998643   2469999999


Q ss_pred             CCCC--CCCCeeEEEEEechhhhhhh
Q 031128           74 KDTF--SLDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        74 ~~~~--~~d~~iG~~~i~l~~l~~~~   97 (165)
                      .+.+  +++++||++.+++.++..+.
T Consensus        93 ~~~~~~~~~~~iG~~~i~l~~l~~~~  118 (127)
T cd04030          93 SKSFLSREKKLLGQVLIDLSDLDLSK  118 (127)
T ss_pred             CCcccCCCCceEEEEEEecccccccC
Confidence            9875  68999999999999886543

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.85  E-value=1e-20  Score=126.98  Aligned_cols=92  Identities=21%  Similarity=0.389  Sum_probs=82.0

Q ss_pred             EEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-eEEeccccc-CCCCCeEecEEEEEEeCC-----CCcEEEEEEeCCCCC
Q 031128            7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-QKLKTRVVK-NNVNPEWNEDLTLSISDS-----NLPIKLTVYDKDTFS   78 (165)
Q Consensus         7 ~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-~~~~T~~~~-~~~~P~w~e~f~f~~~~~-----~~~l~i~v~d~~~~~   78 (165)
                      .|+|+|++|++|+..+ .+.+||||++++++ +.++|++.. ++.||.|||.|.|.+..+     ...|.|+|||++.++
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~   80 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL   80 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence            4899999999999888 78999999999988 888999876 479999999999999776     356999999999988


Q ss_pred             CCCeeEEEEEechhhhhhhc
Q 031128           79 LDDKMGDAEFYITPFLEALK   98 (165)
Q Consensus        79 ~d~~iG~~~i~l~~l~~~~~   98 (165)
                      +|++||++.+++.++..+..
T Consensus        81 ~~~~lG~~~i~l~~l~~~~~  100 (125)
T cd04051          81 GDKLIGEVRVPLKDLLDGAS  100 (125)
T ss_pred             CCCcEEEEEEEHHHhhcccC
Confidence            99999999999999987543

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.85  E-value=1.2e-20  Score=124.16  Aligned_cols=89  Identities=27%  Similarity=0.348  Sum_probs=79.4

Q ss_pred             EEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCC-----CcEEEEEEeCCCCCCC
Q 031128            6 GLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSN-----LPIKLTVYDKDTFSLD   80 (165)
Q Consensus         6 g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~-----~~l~i~v~d~~~~~~d   80 (165)
                      -.|+|+|++|++|+   .+.+||||++++++++++|++++++.||.|||.|.|.+..+.     ..|.|+|||++.++++
T Consensus         4 ~~l~V~v~~a~~L~---~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~   80 (111)
T cd04011           4 FQVRVRVIEARQLV---GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSD   80 (111)
T ss_pred             EEEEEEEEEcccCC---CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccC
Confidence            46899999999998   467999999999999999999999999999999999985433     4599999999999889


Q ss_pred             CeeEEEEEechhhhhhh
Q 031128           81 DKMGDAEFYITPFLEAL   97 (165)
Q Consensus        81 ~~iG~~~i~l~~l~~~~   97 (165)
                      ++||++.++|+++..+.
T Consensus        81 ~~iG~~~i~l~~v~~~~   97 (111)
T cd04011          81 TLIGSFKLDVGTVYDQP   97 (111)
T ss_pred             CccEEEEECCccccCCC
Confidence            99999999999887653

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.85  E-value=8.4e-21  Score=132.72  Aligned_cols=92  Identities=32%  Similarity=0.375  Sum_probs=80.9

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEeCC----CCcEEEEEEe
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSISDS----NLPIKLTVYD   73 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~~~----~~~l~i~v~d   73 (165)
                      ..|.|.|+|++|+||+..+ .+.+||||++.+.     ...++|++++++.||.|||.|.|.+...    +..|.|+|||
T Consensus        25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d  104 (162)
T cd04020          25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD  104 (162)
T ss_pred             CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence            5689999999999999988 7889999999883     3578999999999999999999986422    2459999999


Q ss_pred             CCCCCCCCeeEEEEEechhhhh
Q 031128           74 KDTFSLDDKMGDAEFYITPFLE   95 (165)
Q Consensus        74 ~~~~~~d~~iG~~~i~l~~l~~   95 (165)
                      ++.++++++||++.+++.++..
T Consensus       105 ~d~~~~d~~lG~v~i~l~~~~~  126 (162)
T cd04020         105 HDKLSSNDFLGGVRLGLGTGKS  126 (162)
T ss_pred             CCCCCCCceEEEEEEeCCcccc
Confidence            9999899999999999988765

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.85  E-value=1.6e-20  Score=125.63  Aligned_cols=93  Identities=18%  Similarity=0.241  Sum_probs=81.4

Q ss_pred             cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC--C----eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEE
Q 031128            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG--K----QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVY   72 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~--~----~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~   72 (165)
                      ...+.|.|+|++|+||+..+ .+.+||||++++.  .    .+++|++.+++.||+|||+|.|.+...   +..|.|+||
T Consensus        11 ~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~   90 (124)
T cd08680          11 SGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVC   90 (124)
T ss_pred             CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEE
Confidence            34678999999999999887 7789999999975  1    368999999999999999999998653   356999999


Q ss_pred             eCCCCCCCCeeEEEEEechhhhh
Q 031128           73 DKDTFSLDDKMGDAEFYITPFLE   95 (165)
Q Consensus        73 d~~~~~~d~~iG~~~i~l~~l~~   95 (165)
                      |.+.++++++||++.++|+++..
T Consensus        91 ~~~~~~~~~~lG~~~i~L~~~~~  113 (124)
T cd08680          91 SVGPDQQEECLGGAQISLADFES  113 (124)
T ss_pred             eCCCCCceeEEEEEEEEhhhccC
Confidence            99999999999999999998854

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.84  E-value=7.7e-20  Score=126.09  Aligned_cols=90  Identities=30%  Similarity=0.409  Sum_probs=80.4

Q ss_pred             EEEEEEEEeeCCCCCC-C--------------CCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCC--CCcEEE
Q 031128            7 LLRVHVLRGVNLAVRD-V--------------VSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDS--NLPIKL   69 (165)
Q Consensus         7 ~L~V~v~~a~~L~~~~-~--------------~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~--~~~l~i   69 (165)
                      .|.|+|++|++|+.++ .              +.+||||++.+++++.+|++++++.||+|||+|.|.+..+  ...|.|
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~   80 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI   80 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence            3789999999999987 3              2589999999999999999999999999999999997543  356999


Q ss_pred             EEEeCCCCCCCCeeEEEEEechhhhhh
Q 031128           70 TVYDKDTFSLDDKMGDAEFYITPFLEA   96 (165)
Q Consensus        70 ~v~d~~~~~~d~~iG~~~i~l~~l~~~   96 (165)
                      +|||++..++|++||++.+++.++...
T Consensus        81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~  107 (151)
T cd04018          81 QIRDWDRVGNDDVIGTHFIDLSKISNS  107 (151)
T ss_pred             EEEECCCCCCCCEEEEEEEeHHHhccC
Confidence            999999999999999999999988764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.84  E-value=4.4e-20  Score=124.46  Aligned_cols=92  Identities=28%  Similarity=0.419  Sum_probs=78.9

Q ss_pred             ccEEEEEEEEEeeCCCCCC-C-CCCCcEEEEEEC---CeEEecccccCCCCCeEecEEEEE-EeC---CCCcEEEEEEeC
Q 031128            4 LMGLLRVHVLRGVNLAVRD-V-VSSDPYVVIKMG---KQKLKTRVVKNNVNPEWNEDLTLS-ISD---SNLPIKLTVYDK   74 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~-~~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~-~~~---~~~~l~i~v~d~   74 (165)
                      ..+.|.|+|++|++|+..+ . +.+||||++.+.   .++.+|++++++.||.|||+|.|. +..   ....|.|+|||+
T Consensus        14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~   93 (128)
T cd08388          14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSF   93 (128)
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEc
Confidence            4578999999999999887 4 889999999985   456799999999999999999994 432   123599999999


Q ss_pred             CCCCCCCeeEEEEEechhhhh
Q 031128           75 DTFSLDDKMGDAEFYITPFLE   95 (165)
Q Consensus        75 ~~~~~d~~iG~~~i~l~~l~~   95 (165)
                      +.++++++||++.++|+++.-
T Consensus        94 d~~~~d~~lG~~~i~L~~l~~  114 (128)
T cd08388          94 DRYSRDDVIGEVVCPLAGADL  114 (128)
T ss_pred             CCCCCCceeEEEEEeccccCC
Confidence            999999999999999988754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.84  E-value=9.1e-20  Score=124.68  Aligned_cols=90  Identities=13%  Similarity=0.177  Sum_probs=76.5

Q ss_pred             ccEEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEE-ecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCC-C---C
Q 031128            4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKL-KTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDT-F---S   78 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~~~-~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~-~---~   78 (165)
                      ....|.|.|++|++|+.++    +|||.+.+++... ||+++.++.||.|+|.|.|.+..+...+.|.||..+. .   .
T Consensus         9 ~~~sL~v~V~EAk~Lp~~~----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~   84 (146)
T cd04013           9 TENSLKLWIIEAKGLPPKK----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKD   84 (146)
T ss_pred             EEEEEEEEEEEccCCCCcC----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccccc
Confidence            4567999999999998865    8999999999875 9999999999999999999876666779999986543 2   2


Q ss_pred             CCCeeEEEEEechhhhhhh
Q 031128           79 LDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        79 ~d~~iG~~~i~l~~l~~~~   97 (165)
                      ++++||.+.|++.++..+.
T Consensus        85 ~~~~IG~V~Ip~~~l~~~~  103 (146)
T cd04013          85 KSQLIGTVNIPVTDVSSRQ  103 (146)
T ss_pred             CCcEEEEEEEEHHHhcCCC
Confidence            6799999999999988643

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.84  E-value=3.5e-20  Score=124.35  Aligned_cols=94  Identities=31%  Similarity=0.469  Sum_probs=81.1

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEecccccCCCCCeEecEEEEEEeCC----CCcEEEEEEeCC
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG---KQKLKTRVVKNNVNPEWNEDLTLSISDS----NLPIKLTVYDKD   75 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~~~~~----~~~l~i~v~d~~   75 (165)
                      ..+.|.|+|++|++|+..+ .+.+||||++.+.   ....+|++++++.||.|||.|.|.+...    ...|.|+|||++
T Consensus        14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d   93 (125)
T cd08386          14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD   93 (125)
T ss_pred             CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCC
Confidence            4678999999999999888 7789999999983   4678999999999999999999975322    245999999999


Q ss_pred             CCCCCCeeEEEEEechhhhhhh
Q 031128           76 TFSLDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        76 ~~~~d~~iG~~~i~l~~l~~~~   97 (165)
                      .++++++||++.+++.++..+.
T Consensus        94 ~~~~~~~iG~~~i~l~~l~~~~  115 (125)
T cd08386          94 RFSRNDPIGEVSLPLNKVDLTE  115 (125)
T ss_pred             CCcCCcEeeEEEEecccccCCC
Confidence            9989999999999999877543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.84  E-value=3.9e-20  Score=123.71  Aligned_cols=94  Identities=34%  Similarity=0.460  Sum_probs=81.2

Q ss_pred             cccEEEEEEEEEeeCCCCCC--CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEE
Q 031128            3 NLMGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVY   72 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~--~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~   72 (165)
                      ...+.|.|+|++|+||+..+  .+.+||||++++..     .+.+|++++++.||.|||+|.|.+...   ...|.|+||
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~   90 (123)
T cd08521          11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW   90 (123)
T ss_pred             CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence            45789999999999999876  56899999999841     467999999999999999999998653   346999999


Q ss_pred             eCCCCCCCCeeEEEEEechhhhhh
Q 031128           73 DKDTFSLDDKMGDAEFYITPFLEA   96 (165)
Q Consensus        73 d~~~~~~d~~iG~~~i~l~~l~~~   96 (165)
                      |++.++++++||++.++|+++..+
T Consensus        91 d~~~~~~~~~iG~~~i~l~~l~~~  114 (123)
T cd08521          91 HHDRFGRNTFLGEVEIPLDSWDLD  114 (123)
T ss_pred             eCCCCcCCceeeEEEEeccccccc
Confidence            999998999999999999988543

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.83  E-value=5.4e-20  Score=123.09  Aligned_cols=98  Identities=24%  Similarity=0.389  Sum_probs=83.7

Q ss_pred             CcccEEEEEEEEEeeCCCCCC--CCCCCcEEEEEEC---CeEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEe
Q 031128            2 ENLMGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMG---KQKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYD   73 (165)
Q Consensus         2 ~~~~g~L~V~v~~a~~L~~~~--~~~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d   73 (165)
                      +...+.|.|+|++|++|+..+  .+.+||||++++.   ....+|++++++.||.|||.|.|.+...   ...|.|+|||
T Consensus        10 ~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d   89 (123)
T cd08390          10 DLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYD   89 (123)
T ss_pred             CCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEE
Confidence            345788999999999999886  6789999999984   3567899999999999999999998653   2459999999


Q ss_pred             CCCCCCCCeeEEEEEechhhhhhhcc
Q 031128           74 KDTFSLDDKMGDAEFYITPFLEALKM   99 (165)
Q Consensus        74 ~~~~~~d~~iG~~~i~l~~l~~~~~~   99 (165)
                      ++..+++++||++.++|+++......
T Consensus        90 ~~~~~~~~~iG~~~i~L~~l~~~~~~  115 (123)
T cd08390          90 VDRFSRHCIIGHVLFPLKDLDLVKGG  115 (123)
T ss_pred             CCcCCCCcEEEEEEEeccceecCCCc
Confidence            99988899999999999988775543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.83  E-value=3.2e-19  Score=119.77  Aligned_cols=89  Identities=27%  Similarity=0.482  Sum_probs=78.8

Q ss_pred             EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCe-EEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeE
Q 031128            7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-KLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMG   84 (165)
Q Consensus         7 ~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG   84 (165)
                      .|.|+|.+|+ |...+ .+.+||||+++++++ .++|++++++.+|.|||.|.|.+. ....|.|+|||++..+++++||
T Consensus         3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~~~~~iG   80 (125)
T cd04021           3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLKADVLLG   80 (125)
T ss_pred             eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCCCCcEEE
Confidence            6899999998 54444 778999999999977 889999999999999999999985 3567999999999998999999


Q ss_pred             EEEEechhhhhhh
Q 031128           85 DAEFYITPFLEAL   97 (165)
Q Consensus        85 ~~~i~l~~l~~~~   97 (165)
                      ++.++|.++....
T Consensus        81 ~~~i~l~~l~~~~   93 (125)
T cd04021          81 EASLDLSDILKNH   93 (125)
T ss_pred             EEEEEHHHhHhhc
Confidence            9999999988754

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.83  E-value=7.6e-20  Score=126.32  Aligned_cols=89  Identities=28%  Similarity=0.458  Sum_probs=78.7

Q ss_pred             CcccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----------------------------eEEecccccCCCCCe
Q 031128            2 ENLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----------------------------QKLKTRVVKNNVNPE   51 (165)
Q Consensus         2 ~~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----------------------------~~~~T~~~~~~~~P~   51 (165)
                      +.+.+.|.|+|++|++|...+ .+.+||||++.+..                             ..++|+++.++.||.
T Consensus        24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~  103 (153)
T cd08676          24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV  103 (153)
T ss_pred             CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence            457899999999999999988 88999999999863                             236899999999999


Q ss_pred             EecEEEEEEeCC-CCcEEEEEEeCCCCCCCCeeEEEEEechhhh
Q 031128           52 WNEDLTLSISDS-NLPIKLTVYDKDTFSLDDKMGDAEFYITPFL   94 (165)
Q Consensus        52 w~e~f~f~~~~~-~~~l~i~v~d~~~~~~d~~iG~~~i~l~~l~   94 (165)
                      |||+|.|.+... ...|.|+|||++    +++||++.++++++.
T Consensus       104 WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~  143 (153)
T cd08676         104 WNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLP  143 (153)
T ss_pred             cccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhC
Confidence            999999999764 356999999987    899999999999887

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.83  E-value=7.2e-20  Score=124.19  Aligned_cols=92  Identities=27%  Similarity=0.321  Sum_probs=81.4

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-------CeEEecccccCCCCCeEecEEEEEEeCC-----CCcEEEE
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG-------KQKLKTRVVKNNVNPEWNEDLTLSISDS-----NLPIKLT   70 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~-------~~~~~T~~~~~~~~P~w~e~f~f~~~~~-----~~~l~i~   70 (165)
                      ..+.|.|+|++|++|+..+ .+.+||||++++.       ...++|++++++.||+|||+|.|.+...     ...|.|+
T Consensus        14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~   93 (133)
T cd04009          14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFT   93 (133)
T ss_pred             CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence            4578999999999999887 7889999999986       3468999999999999999999998652     3459999


Q ss_pred             EEeCCCCCCCCeeEEEEEechhhhh
Q 031128           71 VYDKDTFSLDDKMGDAEFYITPFLE   95 (165)
Q Consensus        71 v~d~~~~~~d~~iG~~~i~l~~l~~   95 (165)
                      |||++.++++++||++.++|+++..
T Consensus        94 V~d~d~~~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          94 VKDYDLLGSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             EEecCCCCCCcEeEEEEEeHHHCCc
Confidence            9999999889999999999998875

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.83  E-value=8.6e-20  Score=122.40  Aligned_cols=93  Identities=23%  Similarity=0.346  Sum_probs=79.1

Q ss_pred             cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEecccccCCCCCeEecEEEEE-EeCC---CCcEEEEEEeC
Q 031128            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG---KQKLKTRVVKNNVNPEWNEDLTLS-ISDS---NLPIKLTVYDK   74 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~-~~~~---~~~l~i~v~d~   74 (165)
                      ...+.|.|+|++|+||++.+ .+.+||||++.+.   .++++|++.++ .||+|||+|.|. +...   +..|.|+|||+
T Consensus        13 ~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~   91 (124)
T cd08389          13 PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGV   91 (124)
T ss_pred             CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEEC
Confidence            34578999999999999988 7788999998774   35779999887 999999999998 5432   34599999999


Q ss_pred             CCCCCCCeeEEEEEechhhhhh
Q 031128           75 DTFSLDDKMGDAEFYITPFLEA   96 (165)
Q Consensus        75 ~~~~~d~~iG~~~i~l~~l~~~   96 (165)
                      +.++++++||++.++|+++...
T Consensus        92 ~~~~~~~~lG~~~i~L~~l~~~  113 (124)
T cd08389          92 ERMRKERLIGEKVVPLSQLNLE  113 (124)
T ss_pred             CCcccCceEEEEEEeccccCCC
Confidence            9999999999999999988553

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.83  E-value=2.9e-20  Score=165.54  Aligned_cols=119  Identities=22%  Similarity=0.440  Sum_probs=104.4

Q ss_pred             CCcccEEEEEEEEEeeCCCCCCCCCCCcEEEEEECCe-EEecccccCCCCCeEecEEEEEEeCCC--CcEEEEEEeCCCC
Q 031128            1 MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-KLKTRVVKNNVNPEWNEDLTLSISDSN--LPIKLTVYDKDTF   77 (165)
Q Consensus         1 ~~~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~~~~~~--~~l~i~v~d~~~~   77 (165)
                      |+...|.|.|+|++|+||. .+.+.+||||++.++++ +.||++++++.||.|||+|.|.+.++.  ..|+|+|||+|.+
T Consensus      1975 ~~~~~G~L~V~V~~a~nl~-~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f 2053 (2102)
T PLN03200       1975 LQCLPGSLTVTIKRGNNLK-QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF 2053 (2102)
T ss_pred             HhhCCcceEEEEeeccccc-cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc
Confidence            6778999999999999998 44789999999999965 789999999999999999998887754  6699999999999


Q ss_pred             CCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeecc--ceeee---EEE
Q 031128           78 SLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRN--VEVGE---VKI  152 (165)
Q Consensus        78 ~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~--~~~G~---l~l  152 (165)
                      + ++.+|.+.|++.++..+...                                     ..||.|.+  .+.|+   |++
T Consensus      2054 ~-kd~~G~~~i~l~~vv~~~~~-------------------------------------~~~~~L~~~~~k~G~~~~~~~ 2095 (2102)
T PLN03200       2054 G-KSSLGKVTIQIDRVVMEGTY-------------------------------------SGEYSLNPESNKDGSSRTLEI 2095 (2102)
T ss_pred             C-CCCCceEEEEHHHHhcCcee-------------------------------------eeeeecCcccccCCCcceEEE
Confidence            5 55999999999999875543                                     88899987  56899   999


Q ss_pred             EEEEEe
Q 031128          153 QLEWID  158 (165)
Q Consensus       153 ~l~~~~  158 (165)
                      +++|.+
T Consensus      2096 e~~w~~ 2101 (2102)
T PLN03200       2096 EFQWSN 2101 (2102)
T ss_pred             EEEecC
Confidence            999964

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.83  E-value=4.7e-19  Score=122.33  Aligned_cols=90  Identities=27%  Similarity=0.429  Sum_probs=73.4

Q ss_pred             EEEEEEEeeC--CCCCC-CCCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEeCC---------CCcEEEE
Q 031128            8 LRVHVLRGVN--LAVRD-VVSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSISDS---------NLPIKLT   70 (165)
Q Consensus         8 L~V~v~~a~~--L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~~~---------~~~l~i~   70 (165)
                      ..++|..|++  |+... .+..||||++++.     .++.+|++++++.||+|||+|.|.+...         ...|.|+
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~   83 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE   83 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence            3455666666  56655 6789999999972     4688999999999999999999999654         2459999


Q ss_pred             EEeCCCC-CCCCeeEEEEEechhhhhhh
Q 031128           71 VYDKDTF-SLDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        71 v~d~~~~-~~d~~iG~~~i~l~~l~~~~   97 (165)
                      |||++.+ ++|++||++.++|+.+..+.
T Consensus        84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~  111 (155)
T cd08690          84 VYHKGGFLRSDKLLGTAQVKLEPLETKC  111 (155)
T ss_pred             EEeCCCcccCCCeeEEEEEEcccccccC
Confidence            9999886 57999999999999886654

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.83  E-value=8.3e-20  Score=123.53  Aligned_cols=90  Identities=32%  Similarity=0.517  Sum_probs=80.4

Q ss_pred             EEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEeCC--CCcEEEEEEeCCCC
Q 031128            6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSISDS--NLPIKLTVYDKDTF   77 (165)
Q Consensus         6 g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~~~--~~~l~i~v~d~~~~   77 (165)
                      +.|.|+|++|++|+..+ .+.+||||.+.+.     ...++|++++++.+|.|||+|.|.+...  ...|.|+|||++.+
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~   92 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT   92 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence            78999999999999887 7789999999986     3678999999999999999999998754  34599999999988


Q ss_pred             CCCCeeEEEEEechhhhh
Q 031128           78 SLDDKMGDAEFYITPFLE   95 (165)
Q Consensus        78 ~~d~~iG~~~i~l~~l~~   95 (165)
                      +++++||++.+++.++..
T Consensus        93 ~~~~~iG~~~~~l~~l~~  110 (131)
T cd04026          93 TRNDFMGSLSFGVSELIK  110 (131)
T ss_pred             CCcceeEEEEEeHHHhCc
Confidence            899999999999998875

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.82  E-value=1.7e-19  Score=119.28  Aligned_cols=90  Identities=30%  Similarity=0.479  Sum_probs=79.4

Q ss_pred             EEEEEEEeeCCCCCC-CCCCCcEEEEEECC-eEEecccccCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCCeeE
Q 031128            8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-QKLKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDDKMG   84 (165)
Q Consensus         8 L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-~~~~T~~~~~~~~P~w~e~f~f~~~~~-~~~l~i~v~d~~~~~~d~~iG   84 (165)
                      |+|+|++|++|+..+ .+.+||||++.+.+ ..++|+++.++.+|.|||+|.|.+... ...+.|+|||++..+++++||
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG   80 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence            579999999999887 77899999999975 457999999999999999999998764 456999999999988999999


Q ss_pred             EEEEechhhhhhh
Q 031128           85 DAEFYITPFLEAL   97 (165)
Q Consensus        85 ~~~i~l~~l~~~~   97 (165)
                      ++.+++.++..+.
T Consensus        81 ~~~~~l~~l~~~~   93 (115)
T cd04040          81 SAYIDLSDLEPEE   93 (115)
T ss_pred             EEEEEHHHcCCCC
Confidence            9999999887643

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.82  E-value=4.9e-19  Score=120.32  Aligned_cols=89  Identities=26%  Similarity=0.390  Sum_probs=75.7

Q ss_pred             EEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-------------eEEecccccCCCCCeE-ecEEEEEEeCCCCcEEEEE
Q 031128            7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-------------QKLKTRVVKNNVNPEW-NEDLTLSISDSNLPIKLTV   71 (165)
Q Consensus         7 ~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-------------~~~~T~~~~~~~~P~w-~e~f~f~~~~~~~~l~i~v   71 (165)
                      .+.|++++|++|+ .+ .+.+||||++++..             +.++|++++++.||.| ||.|.|.+. ..+.|.|+|
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~v~V   79 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVLEIEV   79 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEEEEEE
Confidence            3679999999998 56 88999999999852             3689999999999999 999999985 345799999


Q ss_pred             EeCCCCCC---CCeeEEEEEechhhhhhh
Q 031128           72 YDKDTFSL---DDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        72 ~d~~~~~~---d~~iG~~~i~l~~l~~~~   97 (165)
                      ||++..++   +++||++.+++.++..+.
T Consensus        80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~  108 (137)
T cd08691          80 KDKFAKSRPIIRRFLGKLSIPVQRLLERH  108 (137)
T ss_pred             EecCCCCCccCCceEEEEEEEHHHhcccc
Confidence            99865433   799999999999997754

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.82  E-value=1.2e-19  Score=123.69  Aligned_cols=89  Identities=21%  Similarity=0.412  Sum_probs=78.8

Q ss_pred             EEEEEEEeeCCCCCCCCCCCcEEEEEEC----CeEEecccccCCCCCeEecEEEEEEeCC----------------CCcE
Q 031128            8 LRVHVLRGVNLAVRDVVSSDPYVVIKMG----KQKLKTRVVKNNVNPEWNEDLTLSISDS----------------NLPI   67 (165)
Q Consensus         8 L~V~v~~a~~L~~~~~~~~dpyv~v~~~----~~~~~T~~~~~~~~P~w~e~f~f~~~~~----------------~~~l   67 (165)
                      |.|+|++|++|+....+.+||||+++++    ...++|+++.++.+|.|||.|.|.+...                ...|
T Consensus         1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l   80 (137)
T cd08675           1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL   80 (137)
T ss_pred             CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence            5799999999987756789999999998    6789999999999999999999998664                2459


Q ss_pred             EEEEEeCCCCCCCCeeEEEEEechhhhhh
Q 031128           68 KLTVYDKDTFSLDDKMGDAEFYITPFLEA   96 (165)
Q Consensus        68 ~i~v~d~~~~~~d~~iG~~~i~l~~l~~~   96 (165)
                      .|+|||++.++++++||++.+++.++...
T Consensus        81 ~i~V~d~~~~~~~~~IG~~~i~l~~l~~~  109 (137)
T cd08675          81 RVELWHASMVSGDDFLGEVRIPLQGLQQA  109 (137)
T ss_pred             EEEEEcCCcCcCCcEEEEEEEehhhccCC
Confidence            99999999988999999999999987743

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.81  E-value=4.9e-19  Score=117.37  Aligned_cols=80  Identities=23%  Similarity=0.446  Sum_probs=65.8

Q ss_pred             EEEEEEEeeCCCCCCCCCCCcEEEEEECCe-EEecccccCCCCCeEecEEEEEEeCCC---CcEEEEEEeCCCCCCCCee
Q 031128            8 LRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-KLKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYDKDTFSLDDKM   83 (165)
Q Consensus         8 L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~~~~~~---~~l~i~v~d~~~~~~d~~i   83 (165)
                      |.|+|++|++|+..  +.+||||.++++++ .++|+++++ .+|.|||+|.|.+....   ..|.+.+||.+...++.++
T Consensus         2 L~v~vi~a~~l~~~--~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~   78 (117)
T cd08383           2 LRLRILEAKNLPSK--GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVI   78 (117)
T ss_pred             eEEEEEEecCCCcC--CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEE
Confidence            78999999999887  78999999999975 479999988 99999999999987632   3478889998876666667


Q ss_pred             EEEEEec
Q 031128           84 GDAEFYI   90 (165)
Q Consensus        84 G~~~i~l   90 (165)
                      |.+.+..
T Consensus        79 g~v~l~~   85 (117)
T cd08383          79 GKVALSK   85 (117)
T ss_pred             EEEEecC
Confidence            7655543

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.81  E-value=4.4e-19  Score=118.97  Aligned_cols=89  Identities=31%  Similarity=0.468  Sum_probs=78.6

Q ss_pred             EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeE--EecccccCCCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCCCe
Q 031128            7 LLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQK--LKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLDDK   82 (165)
Q Consensus         7 ~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~--~~T~~~~~~~~P~w~e~f~f~~~~~~-~~l~i~v~d~~~~~~d~~   82 (165)
                      .|+|+|++|++|+..+ .+.+||||++.+++..  .+|++++++.||.|||+|.|.+..+. ..|.|+|||++.+++|++
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~   80 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL   80 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence            3789999999999988 7899999999998765  57888889999999999999986554 459999999999999999


Q ss_pred             eEEEEEechhhhh
Q 031128           83 MGDAEFYITPFLE   95 (165)
Q Consensus        83 iG~~~i~l~~l~~   95 (165)
                      ||++.+++++..-
T Consensus        81 iG~~~i~l~~~~~   93 (124)
T cd04037          81 IGETVIDLEDRFF   93 (124)
T ss_pred             eEEEEEeeccccc
Confidence            9999999987653

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PLN03008 Phospholipase D delta

Probab=99.81  E-value=3.9e-19  Score=147.36  Aligned_cols=121  Identities=22%  Similarity=0.420  Sum_probs=101.5

Q ss_pred             cEEEEEEEEEeeCCCCCC-------------------------------------------CCCCCcEEEEEECCe-EEe
Q 031128            5 MGLLRVHVLRGVNLAVRD-------------------------------------------VVSSDPYVVIKMGKQ-KLK   40 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~-------------------------------------------~~~~dpyv~v~~~~~-~~~   40 (165)
                      -|.|.++|.+|++|+.++                                           .+++||||+|.++++ ..+
T Consensus        13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R   92 (868)
T PLN03008         13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR   92 (868)
T ss_pred             ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence            588999999999998511                                           135699999999876 459


Q ss_pred             cccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCcc
Q 031128           41 TRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENC  120 (165)
Q Consensus        41 T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~  120 (165)
                      |++++++.||+|||+|.|.+.++...|.|+|||++.++ +++||++.|++.++..+...                     
T Consensus        93 TrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~v---------------------  150 (868)
T PLN03008         93 TRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERI---------------------  150 (868)
T ss_pred             EEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCce---------------------
Confidence            99999999999999999999887778999999999995 68999999999998775433                     


Q ss_pred             ccccceeEEeCCcEEeeeeeeeccce------eeeEEEEEEEEeCCCCC
Q 031128          121 LAEESHIVWTDGKLVQNLFLRLRNVE------VGEVKIQLEWIDIPGSR  163 (165)
Q Consensus       121 ~~~~~~~~~~~g~~~~~~~~~l~~~~------~G~l~l~l~~~~~~~~~  163 (165)
                                      +.|++|.+..      .++|+|+|+|.|+....
T Consensus       151 ----------------d~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~~~~  183 (868)
T PLN03008        151 ----------------SGWFPVLGASGKPPKAETAIFIDMKFTPFDQIH  183 (868)
T ss_pred             ----------------EEEEEccccCCCCCCCCcEEEEEEEEEEccccc
Confidence                            7777776532      57999999999997653

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.81  E-value=2.7e-19  Score=121.58  Aligned_cols=89  Identities=24%  Similarity=0.350  Sum_probs=77.4

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeC
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDK   74 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~   74 (165)
                      ..+.|.|+|++|+||+..+ .+.+||||++++..     .+.+|++++++.||+|||+|.|.+...   +..|.|+|||+
T Consensus        13 ~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~   92 (136)
T cd08406          13 TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAES   92 (136)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeC
Confidence            4578999999999999988 78899999999852     256899999999999999999998643   34599999999


Q ss_pred             CCCCCCCeeEEEEEechh
Q 031128           75 DTFSLDDKMGDAEFYITP   92 (165)
Q Consensus        75 ~~~~~d~~iG~~~i~l~~   92 (165)
                      +.++++++||++.+....
T Consensus        93 d~~~~~~~iG~v~lg~~~  110 (136)
T cd08406          93 TEDGKTPNVGHVIIGPAA  110 (136)
T ss_pred             CCCCCCCeeEEEEECCCC
Confidence            999999999999997754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.80  E-value=3e-19  Score=121.09  Aligned_cols=90  Identities=36%  Similarity=0.469  Sum_probs=79.3

Q ss_pred             cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEe
Q 031128            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYD   73 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d   73 (165)
                      ...+.|.|+|++|++|+..+ .+.+||||++.+..     ..++|++++++.||.|||+|.|.+...   ...|.|+|||
T Consensus        10 ~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d   89 (133)
T cd08384          10 TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWD   89 (133)
T ss_pred             CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEe
Confidence            45789999999999999988 78899999999852     467999999999999999999998653   3459999999


Q ss_pred             CCCCCCCCeeEEEEEechh
Q 031128           74 KDTFSLDDKMGDAEFYITP   92 (165)
Q Consensus        74 ~~~~~~d~~iG~~~i~l~~   92 (165)
                      ++..+++++||++.+++..
T Consensus        90 ~d~~~~~~~lG~~~i~l~~  108 (133)
T cd08384          90 KDIGKSNDYIGGLQLGINA  108 (133)
T ss_pred             CCCCCCccEEEEEEEecCC
Confidence            9998899999999999975

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.80  E-value=1.7e-19  Score=122.80  Aligned_cols=91  Identities=30%  Similarity=0.401  Sum_probs=78.9

Q ss_pred             cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCCC---CcEEEEEEe
Q 031128            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYD   73 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~~---~~l~i~v~d   73 (165)
                      ...|.|.|+|++|++|+..+ .+.+||||++.+..     ..++|++++++.||.|||+|.|.+....   ..|.|+|||
T Consensus        12 ~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d   91 (136)
T cd08402          12 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLD   91 (136)
T ss_pred             CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEe
Confidence            35689999999999999888 78899999999852     3568999999999999999999986432   358999999


Q ss_pred             CCCCCCCCeeEEEEEechhh
Q 031128           74 KDTFSLDDKMGDAEFYITPF   93 (165)
Q Consensus        74 ~~~~~~d~~iG~~~i~l~~l   93 (165)
                      ++.++++++||++.+++...
T Consensus        92 ~~~~~~~~~iG~~~i~~~~~  111 (136)
T cd08402          92 YDRIGKNDPIGKVVLGCNAT  111 (136)
T ss_pred             CCCCCCCceeEEEEECCccC
Confidence            99999999999999999753

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.80  E-value=4e-20  Score=142.81  Aligned_cols=93  Identities=34%  Similarity=0.493  Sum_probs=83.6

Q ss_pred             cEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEeCCC--CcEEEEEEeCCC
Q 031128            5 MGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSISDSN--LPIKLTVYDKDT   76 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~~~~--~~l~i~v~d~~~   76 (165)
                      ...|.|+|.+|+||.+++ +|.+||||++.+-     ..+++|++++.++||+|||+|+|.+...+  ..|.++|||||+
T Consensus       179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr  258 (683)
T KOG0696|consen  179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR  258 (683)
T ss_pred             CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc
Confidence            356889999999999999 9999999999985     35679999999999999999999997654  459999999999


Q ss_pred             CCCCCeeEEEEEechhhhhhh
Q 031128           77 FSLDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        77 ~~~d~~iG~~~i~l~~l~~~~   97 (165)
                      .++++|+|...+.++++....
T Consensus       259 TsRNDFMGslSFgisEl~K~p  279 (683)
T KOG0696|consen  259 TSRNDFMGSLSFGISELQKAP  279 (683)
T ss_pred             cccccccceecccHHHHhhcc
Confidence            999999999999999998754

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.80  E-value=5.4e-19  Score=120.20  Aligned_cols=89  Identities=21%  Similarity=0.365  Sum_probs=77.4

Q ss_pred             ccEEEEEEEEEeeCCCCCC---CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEE
Q 031128            4 LMGLLRVHVLRGVNLAVRD---VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVY   72 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~---~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~   72 (165)
                      ..+.|.|+|++|+||+..+   .+.+||||++++..     .+.+|++++++.||+|||.|.|.+...   +..|.|+||
T Consensus        13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~   92 (138)
T cd08407          13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVL   92 (138)
T ss_pred             CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEE
Confidence            4688999999999999887   35589999999873     256899999999999999999998753   345999999


Q ss_pred             eCCCCCCCCeeEEEEEechh
Q 031128           73 DKDTFSLDDKMGDAEFYITP   92 (165)
Q Consensus        73 d~~~~~~d~~iG~~~i~l~~   92 (165)
                      |++.++++++||++.+++..
T Consensus        93 d~d~~~~~d~iG~v~lg~~~  112 (138)
T cd08407          93 NQDSPGQSLPLGRCSLGLHT  112 (138)
T ss_pred             eCCCCcCcceeceEEecCcC
Confidence            99999999999999999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.79  E-value=9.3e-19  Score=119.36  Aligned_cols=92  Identities=22%  Similarity=0.360  Sum_probs=79.6

Q ss_pred             cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC------eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEE
Q 031128            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK------QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVY   72 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~------~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~   72 (165)
                      ...+.|.|+|++|+||+..+ .+.+||||++.+..      .+++|++++++.||+|||+|.|.+...   +..|.|+||
T Consensus        12 ~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~   91 (138)
T cd08408          12 ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVY   91 (138)
T ss_pred             CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEE
Confidence            45789999999999999988 77899999999852      256999999999999999999998643   346999999


Q ss_pred             eCCCCCCCCeeEEEEEechhhh
Q 031128           73 DKDTFSLDDKMGDAEFYITPFL   94 (165)
Q Consensus        73 d~~~~~~d~~iG~~~i~l~~l~   94 (165)
                      |.+.++++++||++.+++....
T Consensus        92 ~~~~~~~~~~iG~v~l~~~~~~  113 (138)
T cd08408          92 NKRKMKRKEMIGWFSLGLNSSG  113 (138)
T ss_pred             ECCCCCCCcEEEEEEECCcCCC
Confidence            9999999999999999987543

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.79  E-value=9.8e-19  Score=119.05  Aligned_cols=89  Identities=27%  Similarity=0.394  Sum_probs=78.0

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeC
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDK   74 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~   74 (165)
                      ..+.|.|+|++|++|+..+ .+.+||||++.+..     .+.+|++++++.||.|||+|.|.+...   ...|.|+|||+
T Consensus        13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~   92 (136)
T cd08404          13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDS   92 (136)
T ss_pred             CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEEC
Confidence            4678999999999999988 78999999999842     356899999999999999999998642   34589999999


Q ss_pred             CCCCCCCeeEEEEEechh
Q 031128           75 DTFSLDDKMGDAEFYITP   92 (165)
Q Consensus        75 ~~~~~d~~iG~~~i~l~~   92 (165)
                      +.++++++||++.+++..
T Consensus        93 d~~~~~~~iG~~~~~~~~  110 (136)
T cd08404          93 DRVTKNEVIGRLVLGPKA  110 (136)
T ss_pred             CCCCCCccEEEEEECCcC
Confidence            999999999999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.78  E-value=9.2e-18  Score=112.87  Aligned_cols=88  Identities=32%  Similarity=0.545  Sum_probs=76.5

Q ss_pred             EEEEEEEEeeCCCCCC---CCCCCcEEEEEE------CCeEEecccccCCC-CCeEecEEEEEEeCCC-CcEEEEEEeCC
Q 031128            7 LLRVHVLRGVNLAVRD---VVSSDPYVVIKM------GKQKLKTRVVKNNV-NPEWNEDLTLSISDSN-LPIKLTVYDKD   75 (165)
Q Consensus         7 ~L~V~v~~a~~L~~~~---~~~~dpyv~v~~------~~~~~~T~~~~~~~-~P~w~e~f~f~~~~~~-~~l~i~v~d~~   75 (165)
                      .|+|+|++|++|+..+   .+..||||++++      ...+++|+++.++. ||.|||+|.|.+..+. ..|.|+|||++
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~   82 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED   82 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence            6899999999998776   578899999998      34668999988775 9999999999987655 34899999999


Q ss_pred             CCCCCCeeEEEEEechhhhh
Q 031128           76 TFSLDDKMGDAEFYITPFLE   95 (165)
Q Consensus        76 ~~~~d~~iG~~~i~l~~l~~   95 (165)
                      .. ++++||++.++++++..
T Consensus        83 ~~-~~~~iG~~~~~l~~l~~  101 (128)
T cd00275          83 SG-DDDFLGQACLPLDSLRQ  101 (128)
T ss_pred             CC-CCcEeEEEEEEhHHhcC
Confidence            88 99999999999998854

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.78  E-value=2.4e-18  Score=117.16  Aligned_cols=91  Identities=29%  Similarity=0.385  Sum_probs=78.8

Q ss_pred             cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC--C---eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEe
Q 031128            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG--K---QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYD   73 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~--~---~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d   73 (165)
                      ...+.|.|+|++|++|+..+ .+.+||||++.+.  +   ..++|++++++.||.|||.|.|.+...   ...|.|+|||
T Consensus        12 ~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d   91 (136)
T cd08405          12 PTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMD   91 (136)
T ss_pred             CCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEE
Confidence            35688999999999999887 7889999999983  2   356899999999999999999997532   3459999999


Q ss_pred             CCCCCCCCeeEEEEEechhh
Q 031128           74 KDTFSLDDKMGDAEFYITPF   93 (165)
Q Consensus        74 ~~~~~~d~~iG~~~i~l~~l   93 (165)
                      ++.++++++||++.+++.+.
T Consensus        92 ~~~~~~~~~lG~~~i~~~~~  111 (136)
T cd08405          92 KDRLSRNDLIGKIYLGWKSG  111 (136)
T ss_pred             CCCCCCCcEeEEEEECCccC
Confidence            99999999999999999865

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.78  E-value=2.5e-18  Score=115.80  Aligned_cols=90  Identities=17%  Similarity=0.302  Sum_probs=76.4

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEecccccCCC-CCeEecEEEEEEeCCCC--cEEEEEEeC
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----QKLKTRVVKNNV-NPEWNEDLTLSISDSNL--PIKLTVYDK   74 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~-~P~w~e~f~f~~~~~~~--~l~i~v~d~   74 (165)
                      ..|+|+|+|++|+||++.. .+..||||+|++-.     .+.+|++++++. +|.|||.|.|++.....  .|.++|||+
T Consensus        12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~   91 (135)
T cd08692          12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSR   91 (135)
T ss_pred             cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeC
Confidence            4688999999999999875 56679999998752     467899999995 69999999999975432  388999999


Q ss_pred             CCCCCCCeeEEEEEechhh
Q 031128           75 DTFSLDDKMGDAEFYITPF   93 (165)
Q Consensus        75 ~~~~~d~~iG~~~i~l~~l   93 (165)
                      +..+++++||++.+..+..
T Consensus        92 ~~~~~n~~IG~v~lG~~~~  110 (135)
T cd08692          92 SSVRRKHFLGQVWISSDSS  110 (135)
T ss_pred             CCCcCCceEEEEEECCccC
Confidence            9999999999999999753

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.78  E-value=7.3e-19  Score=119.14  Aligned_cols=89  Identities=30%  Similarity=0.437  Sum_probs=78.9

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeC
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDK   74 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~   74 (165)
                      ..+.|.|+|++|++|+..+ .+.+||||++.+..     ..++|+++.++.+|.|||+|.|.+...   ...|.|+|||.
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~   91 (134)
T cd00276          12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK   91 (134)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence            4578999999999999887 78899999999864     256999999999999999999998654   35699999999


Q ss_pred             CCCCCCCeeEEEEEechh
Q 031128           75 DTFSLDDKMGDAEFYITP   92 (165)
Q Consensus        75 ~~~~~d~~iG~~~i~l~~   92 (165)
                      +..+++++||.+.+++++
T Consensus        92 ~~~~~~~~lG~~~i~l~~  109 (134)
T cd00276          92 DSVGRNEVIGQVVLGPDS  109 (134)
T ss_pred             CCCCCCceeEEEEECCCC
Confidence            988899999999999988

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.78  E-value=3.2e-18  Score=114.11  Aligned_cols=88  Identities=28%  Similarity=0.421  Sum_probs=75.8

Q ss_pred             EEEEeeCCCCCC-CCCCCcEEEEEECCe-------EEecccccCCCCCeEecEEEEEEeC-CCCcEEEEEEeCCC----C
Q 031128           11 HVLRGVNLAVRD-VVSSDPYVVIKMGKQ-------KLKTRVVKNNVNPEWNEDLTLSISD-SNLPIKLTVYDKDT----F   77 (165)
Q Consensus        11 ~v~~a~~L~~~~-~~~~dpyv~v~~~~~-------~~~T~~~~~~~~P~w~e~f~f~~~~-~~~~l~i~v~d~~~----~   77 (165)
                      -.++|++|+..+ .+.+||||++.+...       .++|++++++.||.|||.|.|.+.. ....|.|+|||++.    .
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~   84 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL   84 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence            358899999888 889999999999754       4899999999999999999998653 33569999999997    7


Q ss_pred             CCCCeeEEEEEechhhhhhhc
Q 031128           78 SLDDKMGDAEFYITPFLEALK   98 (165)
Q Consensus        78 ~~d~~iG~~~i~l~~l~~~~~   98 (165)
                      +++++||++.+++.++..+..
T Consensus        85 ~~~d~iG~~~i~l~~l~~~~~  105 (120)
T cd04048          85 SDHDFLGEAECTLGEIVSSPG  105 (120)
T ss_pred             CCCcEEEEEEEEHHHHhcCCC
Confidence            899999999999999987543

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.78  E-value=1.9e-18  Score=117.48  Aligned_cols=89  Identities=25%  Similarity=0.421  Sum_probs=76.0

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC--C---eEEecccccCCCCCeEecEEEEEEeCCC---CcEEEEEEeC
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG--K---QKLKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYDK   74 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~--~---~~~~T~~~~~~~~P~w~e~f~f~~~~~~---~~l~i~v~d~   74 (165)
                      ..|.|.|+|++|++|+..+ .+.+||||++.+.  .   ..++|++++++.||.|||+|.|.+....   ..|.|+|||+
T Consensus        12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~   91 (135)
T cd08410          12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGH   91 (135)
T ss_pred             CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeC
Confidence            4688999999999999988 7889999999973  2   3578999999999999999999985422   3499999999


Q ss_pred             CCCCCCCeeEEEEEechh
Q 031128           75 DTFSLDDKMGDAEFYITP   92 (165)
Q Consensus        75 ~~~~~d~~iG~~~i~l~~   92 (165)
                      +..+++++||++.+....
T Consensus        92 d~~~~~~~iG~~~l~~~~  109 (135)
T cd08410          92 NVKSSNDFIGRIVIGQYS  109 (135)
T ss_pred             CCCCCCcEEEEEEEcCcc
Confidence            999999999999876543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.77  E-value=2.9e-18  Score=116.45  Aligned_cols=90  Identities=29%  Similarity=0.428  Sum_probs=77.7

Q ss_pred             cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCCC---CcEEEEEEe
Q 031128            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYD   73 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~~---~~l~i~v~d   73 (165)
                      ...+.|+|+|++|++|+..+ .+.+||||++.+..     ..++|++++++.||.|||.|.|.+....   ..|.|+|||
T Consensus        11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d   90 (134)
T cd08403          11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVD   90 (134)
T ss_pred             CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence            35689999999999999988 78999999999842     3568999999999999999999985422   348999999


Q ss_pred             CCCCCCCCeeEEEEEechh
Q 031128           74 KDTFSLDDKMGDAEFYITP   92 (165)
Q Consensus        74 ~~~~~~d~~iG~~~i~l~~   92 (165)
                      ++.++++++||++.+++..
T Consensus        91 ~~~~~~~~~IG~~~l~~~~  109 (134)
T cd08403          91 YDRVGHNELIGVCRVGPNA  109 (134)
T ss_pred             CCCCCCCceeEEEEECCCC
Confidence            9999999999999999863

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.77  E-value=7.4e-18  Score=112.77  Aligned_cols=95  Identities=28%  Similarity=0.401  Sum_probs=80.6

Q ss_pred             cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEeCC----CCcEEEEEE
Q 031128            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSISDS----NLPIKLTVY   72 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~~~----~~~l~i~v~   72 (165)
                      ...+.|.|+|++|++|+..+ .+.+||||++.+.     ....+|++++++.||.|||.|.|.....    ...|.|+||
T Consensus        12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~   91 (123)
T cd04035          12 PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVL   91 (123)
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence            34578999999999999887 7789999999974     2468999999999999999999964322    346999999


Q ss_pred             eCCCCCCCCeeEEEEEechhhhhhhc
Q 031128           73 DKDTFSLDDKMGDAEFYITPFLEALK   98 (165)
Q Consensus        73 d~~~~~~d~~iG~~~i~l~~l~~~~~   98 (165)
                      |++.+ ++++||++.++++++..+..
T Consensus        92 d~~~~-~~~~iG~~~i~l~~l~~~~~  116 (123)
T cd04035          92 DEDRF-GNDFLGETRIPLKKLKPNQT  116 (123)
T ss_pred             EcCCc-CCeeEEEEEEEcccCCCCcc
Confidence            99988 89999999999999887543

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=5.3e-18  Score=134.35  Aligned_cols=94  Identities=33%  Similarity=0.480  Sum_probs=82.5

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCC
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG---KQKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDT   76 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~~   76 (165)
                      ....|.|+|++|++|+..+ .+.+||||++++.   +.+.+|++.++++||.|||+|.|.+...   ...|.++|||.|+
T Consensus       165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr  244 (421)
T KOG1028|consen  165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR  244 (421)
T ss_pred             cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence            4567999999999999999 6789999999997   3578999999999999999999997543   3569999999999


Q ss_pred             CCCCCeeEEEEEechhhhhhh
Q 031128           77 FSLDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        77 ~~~d~~iG~~~i~l~~l~~~~   97 (165)
                      ++++++||++.++|..+....
T Consensus       245 fsr~~~iGev~~~l~~~~~~~  265 (421)
T KOG1028|consen  245 FSRHDFIGEVILPLGEVDLLS  265 (421)
T ss_pred             cccccEEEEEEecCccccccc
Confidence            999999999999988766543

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.75  E-value=3.8e-18  Score=116.25  Aligned_cols=90  Identities=21%  Similarity=0.310  Sum_probs=77.0

Q ss_pred             ccEEEEEEEEEeeCCCCCCCCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCC
Q 031128            4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKD   75 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~   75 (165)
                      ..+.|.|+|++|+||+..+.+.+||||++.+..     .+++|++++++.||.|||.|.|.+...   ...|.|+|||.+
T Consensus        13 ~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~   92 (137)
T cd08409          13 TLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSG   92 (137)
T ss_pred             CCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCC
Confidence            467899999999999987767799999999762     366899999999999999999998642   245999999999


Q ss_pred             CCCCCCeeEEEEEechhh
Q 031128           76 TFSLDDKMGDAEFYITPF   93 (165)
Q Consensus        76 ~~~~d~~iG~~~i~l~~l   93 (165)
                      ..+++++||++.+.....
T Consensus        93 ~~~~~~~lG~v~ig~~~~  110 (137)
T cd08409          93 GVRKSKLLGRVVLGPFMY  110 (137)
T ss_pred             CCCCcceEEEEEECCccc
Confidence            988999999999986533

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.75  E-value=1.4e-17  Score=109.40  Aligned_cols=80  Identities=26%  Similarity=0.552  Sum_probs=68.9

Q ss_pred             EEEEEEEeeCCCCCCCCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeC-------C
Q 031128            8 LRVHVLRGVNLAVRDVVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDK-------D   75 (165)
Q Consensus         8 L~V~v~~a~~L~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~-------~   75 (165)
                      |.|+|.+|+||+    +.+||||++.+..     ..++|++++++.||+|||+|.|.+. ....|.+.|||+       +
T Consensus         1 L~V~V~~A~~L~----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~-~s~~L~~~v~d~~~~~~~~d   75 (118)
T cd08686           1 LNVIVHSAQGFK----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE-GSQTLRILCYEKCYSKVKLD   75 (118)
T ss_pred             CEEEEEeCCCCC----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC-CCCEEEEEEEEccccccccc
Confidence            679999999996    4589999998863     4689999999999999999999996 456799999998       4


Q ss_pred             CCCCCCeeEEEEEechh
Q 031128           76 TFSLDDKMGDAEFYITP   92 (165)
Q Consensus        76 ~~~~d~~iG~~~i~l~~   92 (165)
                      ..++|+++|.+.+.|+.
T Consensus        76 ~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          76 GEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             ccCcccEEEEEEEEECH
Confidence            56789999998888864

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.73  E-value=1.3e-17  Score=134.53  Aligned_cols=122  Identities=20%  Similarity=0.322  Sum_probs=108.4

Q ss_pred             EEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCe-EEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCee
Q 031128            6 GLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-KLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKM   83 (165)
Q Consensus         6 g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~i   83 (165)
                      ..|.|+|.+|+||++.+ .|..||||.|.+++. ..||.++.+++.|.|.|+|.|.+...-..|.|.|||.| +++|+.|
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I   83 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII   83 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence            45899999999999999 899999999999965 67999999999999999999999877778999999999 8899999


Q ss_pred             EEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccce-----eeeEEEEEEEEe
Q 031128           84 GDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVE-----VGEVKIQLEWID  158 (165)
Q Consensus        84 G~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~-----~G~l~l~l~~~~  158 (165)
                      |.+.|.=+++......                                     |.||.|+.+.     +|+|+|++++.+
T Consensus        84 GKvai~re~l~~~~~~-------------------------------------d~W~~L~~VD~dsEVQG~v~l~l~~~e  126 (800)
T KOG2059|consen   84 GKVAIKREDLHMYPGK-------------------------------------DTWFSLQPVDPDSEVQGKVHLELALTE  126 (800)
T ss_pred             ceeeeeHHHHhhCCCC-------------------------------------ccceeccccCCChhhceeEEEEEEecc
Confidence            9999998888775533                                     8898888664     799999999999


Q ss_pred             CCCCCCC
Q 031128          159 IPGSRGL  165 (165)
Q Consensus       159 ~~~~~~~  165 (165)
                      .-+++|+
T Consensus       127 ~~~~~~~  133 (800)
T KOG2059|consen  127 AIQSSGL  133 (800)
T ss_pred             ccCCCcc
Confidence            8877764

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.72  E-value=5.2e-17  Score=106.59  Aligned_cols=86  Identities=30%  Similarity=0.542  Sum_probs=72.8

Q ss_pred             EEEEEeeCCCCCC-CCCCCcEEEEEECCe------EEecccccCCCCCeEecEEEEEEeC-----CCCcEEEEEEeCCCC
Q 031128           10 VHVLRGVNLAVRD-VVSSDPYVVIKMGKQ------KLKTRVVKNNVNPEWNEDLTLSISD-----SNLPIKLTVYDKDTF   77 (165)
Q Consensus        10 V~v~~a~~L~~~~-~~~~dpyv~v~~~~~------~~~T~~~~~~~~P~w~e~f~f~~~~-----~~~~l~i~v~d~~~~   77 (165)
                      +-.++|++|+..+ .+.+||||++++.+.      .++|++++++.||.|| +|.|.+..     ....|.|+|||++.+
T Consensus         4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~   82 (110)
T cd04047           4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS   82 (110)
T ss_pred             EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence            3457899999988 789999999997542      5899999999999999 68877532     145699999999999


Q ss_pred             CCCCeeEEEEEechhhhhh
Q 031128           78 SLDDKMGDAEFYITPFLEA   96 (165)
Q Consensus        78 ~~d~~iG~~~i~l~~l~~~   96 (165)
                      ++|++||++.++++++...
T Consensus        83 ~~d~~iG~~~~~l~~l~~~  101 (110)
T cd04047          83 GKHDLIGEFETTLDELLKS  101 (110)
T ss_pred             CCCcEEEEEEEEHHHHhcC
Confidence            9999999999999999843

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.71  E-value=8.9e-17  Score=100.02  Aligned_cols=80  Identities=35%  Similarity=0.652  Sum_probs=71.6

Q ss_pred             EEEEEEEeeCCCCCC-CCCCCcEEEEEECC---eEEecccccCCCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCCCe
Q 031128            8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGK---QKLKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLDDK   82 (165)
Q Consensus         8 L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~---~~~~T~~~~~~~~P~w~e~f~f~~~~~~-~~l~i~v~d~~~~~~d~~   82 (165)
                      |.|+|.+|++|+..+ .+..+|||++.+..   ..++|+++.++.+|.|+|+|.|.+..+. ..|.|+|||++..+++++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            789999999999877 77899999999986   6799999999999999999999976544 449999999999988999


Q ss_pred             eEEEE
Q 031128           83 MGDAE   87 (165)
Q Consensus        83 iG~~~   87 (165)
                      ||++.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=2.3e-17  Score=132.77  Aligned_cols=92  Identities=30%  Similarity=0.504  Sum_probs=83.1

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCC-----
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTF-----   77 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~-----   77 (165)
                      -...++++|++|++|..++ .|++||||.++++..+.+|+++...+||+|||.|.|++.+....|+++|||.|.-     
T Consensus       293 wsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlkskl  372 (1283)
T KOG1011|consen  293 WSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKL  372 (1283)
T ss_pred             cceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHH
Confidence            3568899999999999999 9999999999999999999999999999999999999999888899999998752     


Q ss_pred             ------CCCCeeEEEEEechhhhh
Q 031128           78 ------SLDDKMGDAEFYITPFLE   95 (165)
Q Consensus        78 ------~~d~~iG~~~i~l~~l~~   95 (165)
                            .+|+|+|+..|.+..+..
T Consensus       373 rqkl~resddflgqtvievrtlsg  396 (1283)
T KOG1011|consen  373 RQKLTRESDDFLGQTVIEVRTLSG  396 (1283)
T ss_pred             HHHhhhcccccccceeEEEEeccc
Confidence                  378999999998876543

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.61  E-value=1.5e-14  Score=92.17  Aligned_cols=90  Identities=36%  Similarity=0.602  Sum_probs=79.5

Q ss_pred             EEEEEEEeeCCCCCC-CCCCCcEEEEEECCe---EEecccccCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCCCCCCCe
Q 031128            8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ---KLKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDTFSLDDK   82 (165)
Q Consensus         8 L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~---~~~T~~~~~~~~P~w~e~f~f~~~~~-~~~l~i~v~d~~~~~~d~~   82 (165)
                      |.|.|++|++|.... ....+|||.+.+...   ..+|+++.++.+|.|||.|.|.+... ...|.|+|||.+..+.+.+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   81 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF   81 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence            789999999998877 467899999999864   78999999989999999999999876 5679999999998878999


Q ss_pred             eEEEEEechhhhhhh
Q 031128           83 MGDAEFYITPFLEAL   97 (165)
Q Consensus        83 iG~~~i~l~~l~~~~   97 (165)
                      +|.+.+++.++..+.
T Consensus        82 ~G~~~~~l~~~~~~~   96 (101)
T smart00239       82 IGQVTIPLSDLLLGG   96 (101)
T ss_pred             eEEEEEEHHHcccCc
Confidence            999999998887654

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd00030 C2 C2 domain

Probab=99.60  E-value=2e-14  Score=91.17  Aligned_cols=87  Identities=44%  Similarity=0.745  Sum_probs=78.0

Q ss_pred             EEEEEEEeeCCCCCC-CCCCCcEEEEEECC-eEEecccccCCCCCeEecEEEEEEeC-CCCcEEEEEEeCCCCCCCCeeE
Q 031128            8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-QKLKTRVVKNNVNPEWNEDLTLSISD-SNLPIKLTVYDKDTFSLDDKMG   84 (165)
Q Consensus         8 L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-~~~~T~~~~~~~~P~w~e~f~f~~~~-~~~~l~i~v~d~~~~~~d~~iG   84 (165)
                      |.|.|++|+++.... ....+|||.+.+.. ..++|.+..++.+|.|++.|.|.+.. ....|.|+||+.+..+++.++|
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig   80 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG   80 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence            578999999998755 66899999999997 88899999999999999999999976 4566999999999887899999


Q ss_pred             EEEEechhhh
Q 031128           85 DAEFYITPFL   94 (165)
Q Consensus        85 ~~~i~l~~l~   94 (165)
                      .+.+++.++.
T Consensus        81 ~~~~~l~~l~   90 (102)
T cd00030          81 EVEIPLSELL   90 (102)
T ss_pred             EEEEeHHHhh
Confidence            9999999987

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>PLN02223 phosphoinositide phospholipase C

Probab=99.57  E-value=6.3e-14  Score=112.38  Aligned_cols=94  Identities=26%  Similarity=0.488  Sum_probs=78.8

Q ss_pred             EEEEEEEEEeeCCCCC-----C-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCCCCc-EEEEEEe
Q 031128            6 GLLRVHVLRGVNLAVR-----D-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDSNLP-IKLTVYD   73 (165)
Q Consensus         6 g~L~V~v~~a~~L~~~-----~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~-l~i~v~d   73 (165)
                      ..|.|+|+.|++++..     + ....||||+|.+.+     ..++|.+..++.||.|||+|.|.+..++.. |.|+|+|
T Consensus       409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D  488 (537)
T PLN02223        409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD  488 (537)
T ss_pred             eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence            5799999999987521     2 34679999999863     356777777789999999999999888865 7999999


Q ss_pred             CCCCCCCCeeEEEEEechhhhhhhcc
Q 031128           74 KDTFSLDDKMGDAEFYITPFLEALKM   99 (165)
Q Consensus        74 ~~~~~~d~~iG~~~i~l~~l~~~~~~   99 (165)
                      +|..++++|+|+..+|+..+..+.++
T Consensus       489 ~D~~~~ddfiGQ~~LPv~~Lr~GyR~  514 (537)
T PLN02223        489 YEVSTADAFCGQTCLPVSELIEGIRA  514 (537)
T ss_pred             cCCCCCCcEEEEEecchHHhcCCcee
Confidence            99988999999999999998886654

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.57  E-value=4.3e-14  Score=95.16  Aligned_cols=91  Identities=26%  Similarity=0.283  Sum_probs=76.0

Q ss_pred             EEEEEEEEeeCCCCCC---CC--CCCcEEEEEECC---eEEecccccCCCC--CeEecEEEEEEeCC-------------
Q 031128            7 LLRVHVLRGVNLAVRD---VV--SSDPYVVIKMGK---QKLKTRVVKNNVN--PEWNEDLTLSISDS-------------   63 (165)
Q Consensus         7 ~L~V~v~~a~~L~~~~---~~--~~dpyv~v~~~~---~~~~T~~~~~~~~--P~w~e~f~f~~~~~-------------   63 (165)
                      .|+|.|.+|++++..+   .|  .+||||++.+.+   .+++|.+..++.|  |.||+.|.|++..+             
T Consensus         1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~   80 (133)
T cd08374           1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH   80 (133)
T ss_pred             CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence            3899999999966543   44  499999999874   5689999999988  99999999987541             


Q ss_pred             -----------CCcEEEEEEeCCCCCCCCeeEEEEEechhhhhhh
Q 031128           64 -----------NLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        64 -----------~~~l~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~   97 (165)
                                 ...|.++|||.|.+++|++||.+.++|..+..+.
T Consensus        81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence                       1348999999999999999999999999877643

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PLN02270 phospholipase D alpha

Probab=99.55  E-value=1e-13  Score=115.36  Aligned_cols=121  Identities=19%  Similarity=0.357  Sum_probs=100.9

Q ss_pred             ccEEEEEEEEEeeCCCCC-----------------C--CCCCCcEEEEEECCeE-EecccccCC-CCCeEecEEEEEEeC
Q 031128            4 LMGLLRVHVLRGVNLAVR-----------------D--VVSSDPYVVIKMGKQK-LKTRVVKNN-VNPEWNEDLTLSISD   62 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~-----------------~--~~~~dpyv~v~~~~~~-~~T~~~~~~-~~P~w~e~f~f~~~~   62 (165)
                      .-|.|.|+|.+|++|+..                 .  .+++|||+.|.+++.+ .||+++.+. .||.|+|.|.+++..
T Consensus         6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah   85 (808)
T PLN02270          6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH   85 (808)
T ss_pred             eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc
Confidence            458999999999999852                 1  2467999999999765 599999885 699999999999998


Q ss_pred             CCCcEEEEEEeCCCCCCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeee
Q 031128           63 SNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRL  142 (165)
Q Consensus        63 ~~~~l~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l  142 (165)
                      ....+.|.|.|.+.++ ..+||.+.+|+.++..+...                                     +.||++
T Consensus        86 ~~~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i-------------------------------------~~~~~~  127 (808)
T PLN02270         86 MASNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEV-------------------------------------DRWVEI  127 (808)
T ss_pred             CcceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCcc-------------------------------------ccEEec
Confidence            8888999999999994 56999999999998886544                                     777777


Q ss_pred             ccce------eeeEEEEEEEEeCCCC
Q 031128          143 RNVE------VGEVKIQLEWIDIPGS  162 (165)
Q Consensus       143 ~~~~------~G~l~l~l~~~~~~~~  162 (165)
                      -+..      .-+|+++++|.|+...
T Consensus       128 ~~~~~~p~~~~~~~~~~~~f~~~~~~  153 (808)
T PLN02270        128 LDNDKNPIHGGSKIHVKLQYFEVTKD  153 (808)
T ss_pred             cCCCCCcCCCCCEEEEEEEEEEcccC
Confidence            6543      3499999999998664

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.49  E-value=5.4e-13  Score=113.35  Aligned_cols=97  Identities=26%  Similarity=0.472  Sum_probs=86.6

Q ss_pred             cccEEEEEEEEEeeCCCCCC---CCCCCcEEEEEECC-eEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCC
Q 031128            3 NLMGLLRVHVLRGVNLAVRD---VVSSDPYVVIKMGK-QKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFS   78 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~---~~~~dpyv~v~~~~-~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~   78 (165)
                      .++|.|.|+|.+|++|...+   .+..|||+++.+.. ...+|++.+++.||+|||+|...+..-.+.|.+++||.+...
T Consensus       433 ~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~~~  512 (1227)
T COG5038         433 TAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSFK  512 (1227)
T ss_pred             CeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccccC
Confidence            47899999999999998877   78999999999764 345999999999999999999999877788999999999999


Q ss_pred             CCCeeEEEEEechhhhhhhcc
Q 031128           79 LDDKMGDAEFYITPFLEALKM   99 (165)
Q Consensus        79 ~d~~iG~~~i~l~~l~~~~~~   99 (165)
                      +|+.+|.+.++|..+.+....
T Consensus       513 sd~vvG~~~l~L~~L~~~~~~  533 (1227)
T COG5038         513 SDKVVGSTQLDLALLHQNPVK  533 (1227)
T ss_pred             CcceeeeEEechHHhhhcccc
Confidence            999999999999998876543

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=99.47  E-value=3.8e-13  Score=110.25  Aligned_cols=93  Identities=26%  Similarity=0.450  Sum_probs=79.2

Q ss_pred             EEEEEEEEeeCCCCCC-----CCCCCcEEEEEECC-----eEEecccc-cCCCCCeEecEEEEEEeCCCCc-EEEEEEeC
Q 031128            7 LLRVHVLRGVNLAVRD-----VVSSDPYVVIKMGK-----QKLKTRVV-KNNVNPEWNEDLTLSISDSNLP-IKLTVYDK   74 (165)
Q Consensus         7 ~L~V~v~~a~~L~~~~-----~~~~dpyv~v~~~~-----~~~~T~~~-~~~~~P~w~e~f~f~~~~~~~~-l~i~v~d~   74 (165)
                      +|.|+|+.|+++++..     ....||||.|.+.+     ...+|+++ .++.||.|+|+|.|.+..|+.. |+|.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            6999999999766543     24679999999764     45689844 5569999999999999998876 79999999


Q ss_pred             CCCCCCCeeEEEEEechhhhhhhcc
Q 031128           75 DTFSLDDKMGDAEFYITPFLEALKM   99 (165)
Q Consensus        75 ~~~~~d~~iG~~~i~l~~l~~~~~~   99 (165)
                      +..++|+|+|+..+|+..+..+.++
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~GyRh  721 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQGYRH  721 (746)
T ss_pred             CCCCcccccceeeccHHHhhCceee
Confidence            9999999999999999999987765

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.46  E-value=7.7e-13  Score=107.89  Aligned_cols=95  Identities=19%  Similarity=0.318  Sum_probs=79.5

Q ss_pred             cEEEEEEEEEeeCCCCC------C-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCCCCc-EEEEE
Q 031128            5 MGLLRVHVLRGVNLAVR------D-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDSNLP-IKLTV   71 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~------~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~-l~i~v   71 (165)
                      ...|.|+|+.|.+++..      + ....||||+|.+-+     .+.+|++..++.||.|||+|.|.+..++.. |+|+|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V  547 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV  547 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence            46899999999987421      1 34579999999753     456888888899999999999999888755 79999


Q ss_pred             EeCCCCCCCCeeEEEEEechhhhhhhcc
Q 031128           72 YDKDTFSLDDKMGDAEFYITPFLEALKM   99 (165)
Q Consensus        72 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~   99 (165)
                      +|++..++|+|+|+..+|+..+..+.++
T Consensus       548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR~  575 (598)
T PLN02230        548 HEHDINEKDDFGGQTCLPVSEIRQGIHA  575 (598)
T ss_pred             EECCCCCCCCEEEEEEcchHHhhCccce
Confidence            9999988999999999999999887654

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.45  E-value=3.6e-13  Score=107.01  Aligned_cols=89  Identities=33%  Similarity=0.474  Sum_probs=77.1

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCCC---CcEEEEEEeC
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYDK   74 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~~---~~l~i~v~d~   74 (165)
                      ..|.|+|.|++|++|...+ .+..||||++.+-.     .+.+|.+.+++.||+|||+|.|.+....   ..|.|+|||+
T Consensus       296 ~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~  375 (421)
T KOG1028|consen  296 TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDH  375 (421)
T ss_pred             CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEc
Confidence            4589999999999999988 78899999999752     4678999999999999999999886432   3489999999


Q ss_pred             CCCCCCCeeEEEEEechh
Q 031128           75 DTFSLDDKMGDAEFYITP   92 (165)
Q Consensus        75 ~~~~~d~~iG~~~i~l~~   92 (165)
                      +.++++++||.+.+....
T Consensus       376 d~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  376 DTLGSNDLIGRCILGSDS  393 (421)
T ss_pred             ccccccceeeEEEecCCC
Confidence            999999999998887764

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.45  E-value=3.2e-13  Score=114.66  Aligned_cols=98  Identities=29%  Similarity=0.419  Sum_probs=88.0

Q ss_pred             CcccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCe-EEecccccCCCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCC
Q 031128            2 ENLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ-KLKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFS   78 (165)
Q Consensus         2 ~~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~~~~~~-~~l~i~v~d~~~~~   78 (165)
                      -...|.|.|.+..|.||+..+ ++.+||||++.+.++ .++|+++++++||.|||++..++.... ..+.+.|+||+...
T Consensus      1036 v~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~ 1115 (1227)
T COG5038        1036 VENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGE 1115 (1227)
T ss_pred             ecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCC
Confidence            356899999999999999999 888999999999876 789999999999999999999998544 45899999999999


Q ss_pred             CCCeeEEEEEechhhhhhhcc
Q 031128           79 LDDKMGDAEFYITPFLEALKM   99 (165)
Q Consensus        79 ~d~~iG~~~i~l~~l~~~~~~   99 (165)
                      +++.||.+.++|..+..+...
T Consensus      1116 knd~lg~~~idL~~l~~~~~~ 1136 (1227)
T COG5038        1116 KNDLLGTAEIDLSKLEPGGTT 1136 (1227)
T ss_pred             CccccccccccHhhcCcCCcc
Confidence            999999999999998876654

>PLN02952 phosphoinositide phospholipase C

Probab=99.45  E-value=1.4e-12  Score=106.61  Aligned_cols=94  Identities=21%  Similarity=0.361  Sum_probs=78.6

Q ss_pred             cEEEEEEEEEeeCCCCCC-------CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCCCCc-EEEEE
Q 031128            5 MGLLRVHVLRGVNLAVRD-------VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDSNLP-IKLTV   71 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~-------~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~-l~i~v   71 (165)
                      ...|.|+|+.|++++...       ....||||+|.+-+     .+.+|+++.++.||.|||+|.|.+..++.. +.|+|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            467999999999875321       23459999999753     567899999999999999999999887755 79999


Q ss_pred             EeCCCCCCCCeeEEEEEechhhhhhhc
Q 031128           72 YDKDTFSLDDKMGDAEFYITPFLEALK   98 (165)
Q Consensus        72 ~d~~~~~~d~~iG~~~i~l~~l~~~~~   98 (165)
                      ||+|..+.++++|++.+|+..+..+.+
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~Lr~GyR  575 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSELRPGIR  575 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHhcCCce
Confidence            999998889999999999999888653

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.45  E-value=1.8e-12  Score=105.51  Aligned_cols=95  Identities=21%  Similarity=0.330  Sum_probs=79.2

Q ss_pred             cEEEEEEEEEeeCCC--CC--C---CCCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEeCCCCc-EEEEE
Q 031128            5 MGLLRVHVLRGVNLA--VR--D---VVSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSISDSNLP-IKLTV   71 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~--~~--~---~~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~-l~i~v   71 (165)
                      ...|.|+|+.|.+++  ..  .   ....||||+|.+.     ..+.+|+++.++.||.|||+|.|.+..++-. |+|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            357999999998753  11  1   3467999999985     3467899999989999999999999887755 79999


Q ss_pred             EeCCCCCCCCeeEEEEEechhhhhhhcc
Q 031128           72 YDKDTFSLDDKMGDAEFYITPFLEALKM   99 (165)
Q Consensus        72 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~   99 (165)
                      ||+|..+.++|+|+..+|+..+..+.++
T Consensus       531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR~  558 (581)
T PLN02222        531 HEYDMSEKDDFGGQTCLPVWELSQGIRA  558 (581)
T ss_pred             EECCCCCCCcEEEEEEcchhhhhCccce
Confidence            9999888899999999999999887654

>PLN02228 Phosphoinositide phospholipase C

Probab=99.41  E-value=4.6e-12  Score=102.95  Aligned_cols=94  Identities=17%  Similarity=0.294  Sum_probs=78.2

Q ss_pred             EEEEEEEEEeeCCCC---CC----CCCCCcEEEEEECC-----eEEecccccCCCCCeE-ecEEEEEEeCCCCc-EEEEE
Q 031128            6 GLLRVHVLRGVNLAV---RD----VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEW-NEDLTLSISDSNLP-IKLTV   71 (165)
Q Consensus         6 g~L~V~v~~a~~L~~---~~----~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w-~e~f~f~~~~~~~~-l~i~v   71 (165)
                      ..|.|+|+.|++|+.   ..    ....||||+|.+.+     .+++|+++.++.||.| ||+|.|.+..++-. |+|.|
T Consensus       431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V  510 (567)
T PLN02228        431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV  510 (567)
T ss_pred             ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence            479999999998731   11    23479999999753     4578999988899999 99999999887755 79999


Q ss_pred             EeCCCCCCCCeeEEEEEechhhhhhhcc
Q 031128           72 YDKDTFSLDDKMGDAEFYITPFLEALKM   99 (165)
Q Consensus        72 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~   99 (165)
                      +|++..+.++|+|+..+|++.+..+.++
T Consensus       511 ~D~d~~~~d~figq~~lPv~~Lr~GYR~  538 (567)
T PLN02228        511 QDYDNDTQNDFAGQTCLPLPELKSGVRA  538 (567)
T ss_pred             EeCCCCCCCCEEEEEEcchhHhhCCeeE
Confidence            9999888999999999999999886654

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.40  E-value=1.6e-12  Score=104.24  Aligned_cols=122  Identities=25%  Similarity=0.428  Sum_probs=99.2

Q ss_pred             cEEEEEEEEEeeCCCCCC--CCCCCcEEEEEECCeEEecccccCCCCCeEe-cEEEEEEeCC---CCcEEEEEEeCCCCC
Q 031128            5 MGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWN-EDLTLSISDS---NLPIKLTVYDKDTFS   78 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~--~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~-e~f~f~~~~~---~~~l~i~v~d~~~~~   78 (165)
                      .|.|.|+|..||+||-++  ....|.||.+.+++..++|.+..+++||.|| +.|.|++.+.   +++|++++.|+|..+
T Consensus         2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys   81 (1169)
T KOG1031|consen    2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS   81 (1169)
T ss_pred             CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence            478999999999999998  6678999999999999999999999999998 6899999764   356999999999999


Q ss_pred             CCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCcccccccee
Q 031128           79 LDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHI  127 (165)
Q Consensus        79 ~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  127 (165)
                      .++-||.+.|+++.+.-.... ..-..+|.++-.|.|......+....+
T Consensus        82 andaigkv~i~idpl~~e~aa-qavhgkgtvisgw~pifdtihgirgei  129 (1169)
T KOG1031|consen   82 ANDAIGKVNIDIDPLCLEEAA-QAVHGKGTVISGWFPIFDTIHGIRGEI  129 (1169)
T ss_pred             cccccceeeeccChHHHHhHH-hhhcCCceEEeeeeecceeccccccee
Confidence            999999999999987764432 123456777777777655444444433

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=99.36  E-value=2.8e-12  Score=105.73  Aligned_cols=93  Identities=26%  Similarity=0.446  Sum_probs=79.2

Q ss_pred             EEEEEEEEEeeCCCCCCCCCCCcEEEEEECC-----eEE-ecccccCCCCCeEe-cEEEEEEeCCCCc-EEEEEEeCCCC
Q 031128            6 GLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK-----QKL-KTRVVKNNVNPEWN-EDLTLSISDSNLP-IKLTVYDKDTF   77 (165)
Q Consensus         6 g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~-----~~~-~T~~~~~~~~P~w~-e~f~f~~~~~~~~-l~i~v~d~~~~   77 (165)
                      -.|.|.|+.||.|+..+.+...|||+|.+.+     .++ +|.++.+++||+|| |.|+|.+.+|+-. |+|.|+|.|.+
T Consensus      1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmf 1144 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMF 1144 (1267)
T ss_pred             eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccccc
Confidence            5689999999999977667778999999763     344 45556667999999 9999999998855 89999999999


Q ss_pred             CCCCeeEEEEEechhhhhhhc
Q 031128           78 SLDDKMGDAEFYITPFLEALK   98 (165)
Q Consensus        78 ~~d~~iG~~~i~l~~l~~~~~   98 (165)
                      +...|||++..|+..+..+.+
T Consensus      1145 s~~~FiaqA~yPv~~ik~GfR 1165 (1267)
T KOG1264|consen 1145 SDPNFLAQATYPVKAIKSGFR 1165 (1267)
T ss_pred             CCcceeeeeecchhhhhccce
Confidence            988999999999999988654

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=99.34  E-value=1.4e-11  Score=78.83  Aligned_cols=87  Identities=21%  Similarity=0.330  Sum_probs=72.4

Q ss_pred             EEEEEEEeeCCCCCC----CCCCCcEEEEEECCe-EEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCe
Q 031128            8 LRVHVLRGVNLAVRD----VVSSDPYVVIKMGKQ-KLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDK   82 (165)
Q Consensus         8 L~V~v~~a~~L~~~~----~~~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~   82 (165)
                      |.|+|.+|+++....    .+.++|||.+.+++. +.||++   +.||.|||+|.|.+. ....+.+.|||...- ..--
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~VyDk~~~-~~~P   75 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVIVYDKGGD-QPVP   75 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEEEEeCCCC-eecc
Confidence            679999999998765    567899999999976 788986   589999999999994 466799999998643 4567


Q ss_pred             eEEEEEechhhhhhhcc
Q 031128           83 MGDAEFYITPFLEALKM   99 (165)
Q Consensus        83 iG~~~i~l~~l~~~~~~   99 (165)
                      ||..-+.++++..+.+.
T Consensus        76 i~llW~~~sdi~Ee~Rr   92 (109)
T cd08689          76 VGLLWLRLSDIAEEIRK   92 (109)
T ss_pred             eeeehhhHHHHHHHHHH
Confidence            89999999999886543

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.15  E-value=4.9e-12  Score=103.31  Aligned_cols=116  Identities=26%  Similarity=0.443  Sum_probs=88.6

Q ss_pred             cEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-------------------------------eEEecccccCCCCCeE
Q 031128            5 MGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-------------------------------QKLKTRVVKNNVNPEW   52 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-------------------------------~~~~T~~~~~~~~P~w   52 (165)
                      .-.+.|.+..|++|..++ +|.+|||+...+..                               -.+-|++.++|+||+|
T Consensus       113 ~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW  192 (1103)
T KOG1328|consen  113 SVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKW  192 (1103)
T ss_pred             cHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcch
Confidence            334566778899999988 89999999987631                               0134678888999999


Q ss_pred             ecEEEEEEeCCC-CcEEEEEEeCCCC---------------------------------CC---CCeeEEEEEechhhhh
Q 031128           53 NEDLTLSISDSN-LPIKLTVYDKDTF---------------------------------SL---DDKMGDAEFYITPFLE   95 (165)
Q Consensus        53 ~e~f~f~~~~~~-~~l~i~v~d~~~~---------------------------------~~---d~~iG~~~i~l~~l~~   95 (165)
                      +|.|.|.+.+-. ..+++.|||+|.-                                 +.   |+|+|.+.||+.++-.
T Consensus       193 ~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~  272 (1103)
T KOG1328|consen  193 SEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPP  272 (1103)
T ss_pred             hhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCc
Confidence            999999998755 4599999998741                                 23   7899999999987765


Q ss_pred             hhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccce-----eeeEEEEEEEEeC
Q 031128           96 ALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVE-----VGEVKIQLEWIDI  159 (165)
Q Consensus        96 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~-----~G~l~l~l~~~~~  159 (165)
                      ..                                      .|.||.|+-.+     +|.++++| |+..
T Consensus       273 ~G--------------------------------------ld~WFkLepRS~~S~VqG~~~Lkl-wLsT  302 (1103)
T KOG1328|consen  273 DG--------------------------------------LDQWFKLEPRSDKSKVQGQVKLKL-WLST  302 (1103)
T ss_pred             ch--------------------------------------HHHHhccCcccccccccceEEEEE-EEee
Confidence            32                                      17888887543     79999998 6543

>PLN02352 phospholipase D epsilon

Probab=99.13  E-value=8.8e-10  Score=91.97  Aligned_cols=115  Identities=17%  Similarity=0.223  Sum_probs=88.1

Q ss_pred             ccEEEEEEEEEeeCCCCC----C--CCCCCcEEEEEECCeE-EecccccCCCCCeEecEEEEEEeCCC-CcEEEEEEeCC
Q 031128            4 LMGLLRVHVLRGVNLAVR----D--VVSSDPYVVIKMGKQK-LKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKD   75 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~----~--~~~~dpyv~v~~~~~~-~~T~~~~~~~~P~w~e~f~f~~~~~~-~~l~i~v~d~~   75 (165)
                      ..|.|.++|.+|+-+...    .  ....+||+.|.+++.+ .||   .+..||.|+|.|.+.+.... ..+.|+|.|  
T Consensus         8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~--   82 (758)
T PLN02352          8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT--   82 (758)
T ss_pred             cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence            358999999999843221    1  1123999999999755 477   55679999999999998877 679999988  


Q ss_pred             CCCCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccce----ee-eE
Q 031128           76 TFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVE----VG-EV  150 (165)
Q Consensus        76 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~----~G-~l  150 (165)
                         .-.+||.+.+|+.++..+..                                    .-+.|+++-+..    .| +|
T Consensus        83 ---~~~~ig~~~~p~~~~~~g~~------------------------------------~~~~~~~~~~~~~~p~~~~~~  123 (758)
T PLN02352         83 ---KCSILGRFHIQAHQIVTEAS------------------------------------FINGFFPLIMENGKPNPELKL  123 (758)
T ss_pred             ---CCeEEEEEEEEHHHhhCCCc------------------------------------ccceEEEcccCCCCCCCCCEE
Confidence               35799999999999887532                                    117777766543    34 99


Q ss_pred             EEEEEEEeCCCC
Q 031128          151 KIQLEWIDIPGS  162 (165)
Q Consensus       151 ~l~l~~~~~~~~  162 (165)
                      ++.++|.|+...
T Consensus       124 ~~~~~~~~~~~~  135 (758)
T PLN02352        124 RFMLWFRPAELE  135 (758)
T ss_pred             EEEEEEEEhhhC
Confidence            999999998765

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.09  E-value=2.7e-11  Score=99.11  Aligned_cols=91  Identities=29%  Similarity=0.371  Sum_probs=78.8

Q ss_pred             cEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-------eEEecccccCCCCCeEecEEEEEEeCCC-----CcEEEEE
Q 031128            5 MGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-------QKLKTRVVKNNVNPEWNEDLTLSISDSN-----LPIKLTV   71 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-------~~~~T~~~~~~~~P~w~e~f~f~~~~~~-----~~l~i~v   71 (165)
                      ...|.|.|+.|+++.+.+ +|.+||||+|.++.       ..++|+++.+++||+|+|.|.|.+....     ..+.|+|
T Consensus       946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTV 1025 (1103)
T KOG1328|consen  946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTV 1025 (1103)
T ss_pred             ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEe
Confidence            456778889999999988 99999999999984       3569999999999999999999996432     2389999


Q ss_pred             EeCCCCCCCCeeEEEEEechhhhh
Q 031128           72 YDKDTFSLDDKMGDAEFYITPFLE   95 (165)
Q Consensus        72 ~d~~~~~~d~~iG~~~i~l~~l~~   95 (165)
                      +|+|-++.++|-|++.+.|+++-.
T Consensus      1026 MDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1026 MDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred             eccceecccccchHHHHhhCCCCC
Confidence            999999999999999999987654

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.95  E-value=1.3e-09  Score=89.03  Aligned_cols=84  Identities=17%  Similarity=0.278  Sum_probs=66.0

Q ss_pred             EEeeCCCCCCCCCCCcEEEEEECCeE----EecccccCCCCCeEecEEEEEEeCC---------------C-CcEEEEEE
Q 031128           13 LRGVNLAVRDVVSSDPYVVIKMGKQK----LKTRVVKNNVNPEWNEDLTLSISDS---------------N-LPIKLTVY   72 (165)
Q Consensus        13 ~~a~~L~~~~~~~~dpyv~v~~~~~~----~~T~~~~~~~~P~w~e~f~f~~~~~---------------~-~~l~i~v~   72 (165)
                      ++++.+.+..++.+|||+.+...+..    .+|++.+++.+|.|+|.|.|.+..+               + ..|++++|
T Consensus       138 L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW  217 (800)
T KOG2059|consen  138 LKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLW  217 (800)
T ss_pred             hhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeec
Confidence            44555555556779999999987543    5999999999999999999988644               1 24889999


Q ss_pred             e-CCCCCCCCeeEEEEEechhhhhh
Q 031128           73 D-KDTFSLDDKMGDAEFYITPFLEA   96 (165)
Q Consensus        73 d-~~~~~~d~~iG~~~i~l~~l~~~   96 (165)
                      + ++....+.|+|++.+++......
T Consensus       218 ~~~~~~~~~~FlGevrv~v~~~~~~  242 (800)
T KOG2059|consen  218 NDLNLVINDVFLGEVRVPVDVLRQK  242 (800)
T ss_pred             cchhhhhhhhhceeEEeehhhhhhc
Confidence            9 56666799999999999887743

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=98.94  E-value=7.1e-10  Score=93.40  Aligned_cols=88  Identities=26%  Similarity=0.418  Sum_probs=79.1

Q ss_pred             cEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeE--EecccccCCCCCeEecEEEEEEeCCCCc-EEEEEEeCCCCCCC
Q 031128            5 MGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQK--LKTRVVKNNVNPEWNEDLTLSISDSNLP-IKLTVYDKDTFSLD   80 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~--~~T~~~~~~~~P~w~e~f~f~~~~~~~~-l~i~v~d~~~~~~d   80 (165)
                      ...++|++++|.+|.+.| .|.+|||+.+.++++.  -++..+.+++||+|++.|.+.+..+... ++++|||+|..++|
T Consensus       612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d  691 (1105)
T KOG1326|consen  612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQD  691 (1105)
T ss_pred             eeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccccc
Confidence            456779999999999999 9999999999999876  4778899999999999999988777654 89999999999999


Q ss_pred             CeeEEEEEechh
Q 031128           81 DKMGDAEFYITP   92 (165)
Q Consensus        81 ~~iG~~~i~l~~   92 (165)
                      +.||+..++|+.
T Consensus       692 ~~iget~iDLEn  703 (1105)
T KOG1326|consen  692 EKIGETTIDLEN  703 (1105)
T ss_pred             chhhceehhhhh
Confidence            999999999975

>PLN02964 phosphatidylserine decarboxylase

Probab=98.72  E-value=3.4e-08  Score=81.92  Aligned_cols=91  Identities=16%  Similarity=0.384  Sum_probs=76.7

Q ss_pred             CCcccEEEEEEEEEeeCCCCCCCCCCCcE-EEEEECCeEEecccccCCCCCeEecEEEEEEeCCCCc-EEEEEEeCCCCC
Q 031128            1 MENLMGLLRVHVLRGVNLAVRDVVSSDPY-VVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLP-IKLTVYDKDTFS   78 (165)
Q Consensus         1 ~~~~~g~L~V~v~~a~~L~~~~~~~~dpy-v~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~-l~i~v~d~~~~~   78 (165)
                      +|+..|.+.+++++|+    ++  ..|+| +.+++|.+.++|.+.+++.||+||+...|.+...+.. .+|.|||++.++
T Consensus        49 ~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  122 (644)
T PLN02964         49 AEDFSGIALLTLVGAE----MK--FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLS  122 (644)
T ss_pred             cccccCeEEEEeehhh----hc--cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCC
Confidence            4678899999999987    22  24776 5577899999999999999999999999998765544 699999999999


Q ss_pred             CCCeeEEEEEechhhhhhh
Q 031128           79 LDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        79 ~d~~iG~~~i~l~~l~~~~   97 (165)
                      +++++|.+.++|.++..+.
T Consensus       123 ~n~lv~~~e~~~t~f~~kq  141 (644)
T PLN02964        123 KNTLVGYCELDLFDFVTQE  141 (644)
T ss_pred             HHHhhhheeecHhhccHHH
Confidence            9999999999887766643

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.65  E-value=2.5e-08  Score=85.61  Aligned_cols=93  Identities=24%  Similarity=0.269  Sum_probs=76.6

Q ss_pred             cEEEEEEEEEeeCCCCC-CCCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeC----CCCcEEEEEEeC
Q 031128            5 MGLLRVHVLRGVNLAVR-DVVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISD----SNLPIKLTVYDK   74 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~-~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~----~~~~l~i~v~d~   74 (165)
                      .|+|.|-|.-|++|+-. +...+||||+.++..     .+.||++++++.+|.|||...+.-..    .+..|+++||..
T Consensus      1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred             CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence            57899999999999544 366799999999873     46799999999999999998876221    125699999999


Q ss_pred             CCCCCCCeeEEEEEechhhhhhh
Q 031128           75 DTFSLDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        75 ~~~~~d~~iG~~~i~l~~l~~~~   97 (165)
                      +.+....++|.+.|+|.++....
T Consensus      1603 ~~~~en~~lg~v~i~L~~~~l~k 1625 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLK 1625 (1639)
T ss_pred             cceeeeeeeeeeecchhhcchhh
Confidence            99989999999999998766544

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.57  E-value=3.6e-07  Score=74.90  Aligned_cols=93  Identities=18%  Similarity=0.236  Sum_probs=77.6

Q ss_pred             EEEEEEEEEeeCCCCCCCCCCCcEEEEEECC-------eEEecccccCCCCCeEecEEEEEEeCCC----CcEEEEEEeC
Q 031128            6 GLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK-------QKLKTRVVKNNVNPEWNEDLTLSISDSN----LPIKLTVYDK   74 (165)
Q Consensus         6 g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~-------~~~~T~~~~~~~~P~w~e~f~f~~~~~~----~~l~i~v~d~   74 (165)
                      ..++|.|+.|.+|.-...|.--|||.|.+-+       +++.|+...++..|.+||+|.|.+.+..    ..|.|.|.|+
T Consensus      1125 hkvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDY 1204 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDY 1204 (1283)
T ss_pred             ceEEEEEEecccccchhccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhh
Confidence            4577889999999887777889999998752       4567888888899999999999987643    3499999999


Q ss_pred             CCCCCCCeeEEEEEechhhhhhhc
Q 031128           75 DTFSLDDKMGDAEFYITPFLEALK   98 (165)
Q Consensus        75 ~~~~~d~~iG~~~i~l~~l~~~~~   98 (165)
                      .-...|..+|-+.++|.++....+
T Consensus      1205 CFAReDRvvGl~VlqL~~va~kGS 1228 (1283)
T KOG1011|consen 1205 CFAREDRVVGLAVLQLRSVADKGS 1228 (1283)
T ss_pred             eeecccceeeeeeeehhhHhhcCc
Confidence            888789999999999999988543

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.38  E-value=5.4e-07  Score=68.24  Aligned_cols=88  Identities=30%  Similarity=0.342  Sum_probs=73.6

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCCC---CcEEEEEEeC
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYDK   74 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~~---~~l~i~v~d~   74 (165)
                      ...-+.|+++.+..|...+ .+.+||||...+..     .+.+|.+.+++.+|.|+++|.|.+...+   ..+.|.|||.
T Consensus       231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~  310 (362)
T KOG1013|consen  231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY  310 (362)
T ss_pred             CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeeccc
Confidence            3456889999999999998 89999999998762     3678999999999999999999987654   3489999999


Q ss_pred             CCCCCCCeeEEEEEech
Q 031128           75 DTFSLDDKMGDAEFYIT   91 (165)
Q Consensus        75 ~~~~~d~~iG~~~i~l~   91 (165)
                      +.-+..+++|-....+.
T Consensus       311 ~~G~s~d~~GG~~~g~~  327 (362)
T KOG1013|consen  311 DIGKSNDSIGGSMLGGY  327 (362)
T ss_pred             CCCcCccCCCccccccc
Confidence            98878899988765543

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.33  E-value=2.9e-06  Score=56.35  Aligned_cols=90  Identities=27%  Similarity=0.417  Sum_probs=67.6

Q ss_pred             EEEEEEEeeCCCCC-------C-------CCCCCcEEEEEEC----CeEEecccccCCCCCeEecEEEEEEe-----CC-
Q 031128            8 LRVHVLRGVNLAVR-------D-------VVSSDPYVVIKMG----KQKLKTRVVKNNVNPEWNEDLTLSIS-----DS-   63 (165)
Q Consensus         8 L~V~v~~a~~L~~~-------~-------~~~~dpyv~v~~~----~~~~~T~~~~~~~~P~w~e~f~f~~~-----~~-   63 (165)
                      |.|.|.+|.+|...       +       .-.-|+||++.+.    .+..+|+++.++..|.|+..++|.+.     +. 
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            46778888887632       1       1135899999954    46789999999999999999999875     11 


Q ss_pred             ----------CCcEEEEEEeCCCC----------CCCCeeEEEEEechhhhhhh
Q 031128           64 ----------NLPIKLTVYDKDTF----------SLDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        64 ----------~~~l~i~v~d~~~~----------~~d~~iG~~~i~l~~l~~~~   97 (165)
                                ...+.|+||+...-          .+|-+||.+.||+.++....
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~r  134 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKR  134 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcc
Confidence                      13589999987542          24568999999999988754

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.11  E-value=1.3e-06  Score=67.31  Aligned_cols=94  Identities=21%  Similarity=0.326  Sum_probs=76.9

Q ss_pred             cccEEEEEEEEEeeCCCCCC--CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEe-C
Q 031128            3 NLMGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYD-K   74 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~--~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d-~   74 (165)
                      +.+|.+.|.|++|++|..+.  ...++|||+|++..     .+.+|+...++..|.+-+...|.-..+...|.+.||. .
T Consensus       266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdy  345 (405)
T KOG2060|consen  266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDY  345 (405)
T ss_pred             cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEeccc
Confidence            35788999999999998776  33789999999763     3568999999999988888888887777889999995 6


Q ss_pred             CCCCCCCeeEEEEEechhhhhh
Q 031128           75 DTFSLDDKMGDAEFYITPFLEA   96 (165)
Q Consensus        75 ~~~~~d~~iG~~~i~l~~l~~~   96 (165)
                      .++-.+.|+|.+.+-+.++.-.
T Consensus       346 gRmd~k~fmg~aqi~l~eL~ls  367 (405)
T KOG2060|consen  346 GRMDHKSFMGVAQIMLDELNLS  367 (405)
T ss_pred             cccchHHHhhHHHHHhhhhccc
Confidence            6777788999998888776553

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=98.08  E-value=7.1e-06  Score=50.85  Aligned_cols=87  Identities=10%  Similarity=0.159  Sum_probs=64.4

Q ss_pred             EEEEEEeeCCCCCC--CCCCCcEEEEEE--C-CeEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCCCCCC
Q 031128            9 RVHVLRGVNLAVRD--VVSSDPYVVIKM--G-KQKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDTFSLD   80 (165)
Q Consensus         9 ~V~v~~a~~L~~~~--~~~~dpyv~v~~--~-~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~~~~~d   80 (165)
                      -|+++++++|.-..  ...+.-|++--+  . ....+|.+.+.+.||.|.|+|.|.+..-   +-.|.|.|++  .+.+.
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK   79 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK   79 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence            37899999987665  223344655333  2 3467899988999999999999987542   3348899998  45578


Q ss_pred             CeeEEEEEechhhhhhh
Q 031128           81 DKMGDAEFYITPFLEAL   97 (165)
Q Consensus        81 ~~iG~~~i~l~~l~~~~   97 (165)
                      +.||.+.+.++++-.+.
T Consensus        80 e~iG~~sL~l~s~geeE   96 (103)
T cd08684          80 RTIGECSLSLRTLSTQE   96 (103)
T ss_pred             ceeeEEEeecccCCHHH
Confidence            89999999998876544

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.97  E-value=1.7e-06  Score=65.66  Aligned_cols=93  Identities=23%  Similarity=0.333  Sum_probs=75.6

Q ss_pred             cEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCC----CCcEEEEEEeC
Q 031128            5 MGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDS----NLPIKLTVYDK   74 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~----~~~l~i~v~d~   74 (165)
                      ...+..++..|++|.+++ .+..|||++..+..     .+.+|++..++.||.|+|...+.....    .+.+.+.|.|+
T Consensus        92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn  171 (362)
T KOG1013|consen   92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDN  171 (362)
T ss_pred             hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccC
Confidence            346788999999999999 88999999999873     357889999999999999876654321    14488999999


Q ss_pred             CCCCCCCeeEEEEEechhhhhhh
Q 031128           75 DTFSLDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        75 ~~~~~d~~iG~~~i~l~~l~~~~   97 (165)
                      +.+...+++|+..+++..+....
T Consensus       172 ~~~~~~~sqGq~r~~lkKl~p~q  194 (362)
T KOG1013|consen  172 DKKTHNESQGQSRVSLKKLKPLQ  194 (362)
T ss_pred             cccccccCcccchhhhhccChhh
Confidence            99988999999998888776543

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=97.91  E-value=6.2e-05  Score=63.85  Aligned_cols=88  Identities=23%  Similarity=0.411  Sum_probs=68.9

Q ss_pred             cEEEEEEEEEeeCCCCCCCCCCCcEEEEEECC-------eEEecccccCC-CCCeEec-EEEEE-EeCCC-CcEEEEEEe
Q 031128            5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK-------QKLKTRVVKNN-VNPEWNE-DLTLS-ISDSN-LPIKLTVYD   73 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~-------~~~~T~~~~~~-~~P~w~e-~f~f~-~~~~~-~~l~i~v~d   73 (165)
                      .+.+.|+|++|.-|..+..   ..||.|.+-+       ..++|++...+ .||+|+| .|.|. +.-++ ..|+|.||+
T Consensus       702 A~t~sV~VISgqFLSdrkv---gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye  778 (1189)
T KOG1265|consen  702 AATLSVTVISGQFLSDRKV---GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE  778 (1189)
T ss_pred             EeeEEEEEEeeeecccccc---CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence            5789999999999987763   4799999752       46788888764 9999996 47775 33344 449999999


Q ss_pred             CCCCCCCCeeEEEEEechhhhhhhcc
Q 031128           74 KDTFSLDDKMGDAEFYITPFLEALKM   99 (165)
Q Consensus        74 ~~~~~~d~~iG~~~i~l~~l~~~~~~   99 (165)
                      .+    .++||+-.+|+..+..+..+
T Consensus       779 Eg----gK~ig~RIlpvd~l~~GYrh  800 (1189)
T KOG1265|consen  779 EG----GKFIGQRILPVDGLNAGYRH  800 (1189)
T ss_pred             cC----CceeeeeccchhcccCccee
Confidence            74    57999999999888776654

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=97.89  E-value=3.3e-05  Score=62.50  Aligned_cols=83  Identities=33%  Similarity=0.573  Sum_probs=66.5

Q ss_pred             EEEeeCCCCCC-CCCCCcEEEEEEC--C----eEEecccccCCCCCeEecEEEEEE-----eCCCCcEEEEEEeCCCCCC
Q 031128           12 VLRGVNLAVRD-VVSSDPYVVIKMG--K----QKLKTRVVKNNVNPEWNEDLTLSI-----SDSNLPIKLTVYDKDTFSL   79 (165)
Q Consensus        12 v~~a~~L~~~~-~~~~dpyv~v~~~--~----~~~~T~~~~~~~~P~w~e~f~f~~-----~~~~~~l~i~v~d~~~~~~   79 (165)
                      ..+|++|.+++ ++++|||..+.--  .    ..++|.+++++++|.|.+ |.+..     .++...+.+.+||++..++
T Consensus       142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~  220 (529)
T KOG1327|consen  142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK  220 (529)
T ss_pred             eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence            35578888888 8999999887643  1    356999999999999987 44433     2334669999999999989


Q ss_pred             CCeeEEEEEechhhhh
Q 031128           80 DDKMGDAEFYITPFLE   95 (165)
Q Consensus        80 d~~iG~~~i~l~~l~~   95 (165)
                      +++||++..++.++..
T Consensus       221 ~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  221 HDLIGKFQTTLSELQE  236 (529)
T ss_pred             cCceeEecccHHHhcc
Confidence            9999999999988864

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=97.84  E-value=1.9e-05  Score=61.76  Aligned_cols=92  Identities=26%  Similarity=0.434  Sum_probs=69.1

Q ss_pred             EEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEeCC---C---------CcEEE
Q 031128            8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSISDS---N---------LPIKL   69 (165)
Q Consensus         8 L~V~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~---------~~l~i   69 (165)
                      |.+.|+++++++-.. ..-.|.|+.+.+-     .++.+|.+++++.+|.|+|.|.+.+...   .         .-++|
T Consensus       369 lel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kf  448 (523)
T KOG3837|consen  369 LELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKF  448 (523)
T ss_pred             hHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeE
Confidence            456667777665443 2335678887754     3567899999999999999999998652   1         23899


Q ss_pred             EEEeCCC-CCCCCeeEEEEEechhhhhhhcc
Q 031128           70 TVYDKDT-FSLDDKMGDAEFYITPFLEALKM   99 (165)
Q Consensus        70 ~v~d~~~-~~~d~~iG~~~i~l~~l~~~~~~   99 (165)
                      ++|++.. +.+|.++|.+.+.|..+.....+
T Consensus       449 eifhkggf~rSdkl~gt~nikle~Len~cei  479 (523)
T KOG3837|consen  449 EIFHKGGFNRSDKLTGTGNIKLEILENMCEI  479 (523)
T ss_pred             EEeeccccccccceeceeeeeehhhhcccch
Confidence            9999865 46799999999999888775544

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=97.82  E-value=2.3e-06  Score=72.88  Aligned_cols=86  Identities=23%  Similarity=0.340  Sum_probs=69.5

Q ss_pred             EEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeC----C-----C-CcEEEEEEeCCC
Q 031128            8 LRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISD----S-----N-LPIKLTVYDKDT   76 (165)
Q Consensus         8 L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~----~-----~-~~l~i~v~d~~~   76 (165)
                      +++.+.+|+.|...+ .+.+|||..+.+.++.+.|.++.++++|.|++...|.-..    +     + ..+.+++||.++
T Consensus       208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr  287 (1105)
T KOG1326|consen  208 LRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDR  287 (1105)
T ss_pred             hHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhh
Confidence            445566788888877 7789999999999999999999999999999999885321    1     1 227899999999


Q ss_pred             CCCCCeeEEEEEechhh
Q 031128           77 FSLDDKMGDAEFYITPF   93 (165)
Q Consensus        77 ~~~d~~iG~~~i~l~~l   93 (165)
                      .+.++|+|+......-+
T Consensus       288 ~g~~ef~gr~~~~p~V~  304 (1105)
T KOG1326|consen  288 SGINEFKGRKKQRPYVM  304 (1105)
T ss_pred             hchHHhhcccccceEEE
Confidence            99999999976654433

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=97.53  E-value=0.0055  Score=42.36  Aligned_cols=94  Identities=15%  Similarity=0.182  Sum_probs=68.6

Q ss_pred             ccEEEEEEEEEeeCCCCCCC---CCCCc--EEEEEECCeEEecccccCCCCCeEecEEEEEEeCCC--------------
Q 031128            4 LMGLLRVHVLRGVNLAVRDV---VSSDP--YVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSN--------------   64 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~~---~~~dp--yv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~--------------   64 (165)
                      ..-.|.+.|..++-......   +..+.  .+-+.+++++++|+.+..+.+|.|+|.|-|++....              
T Consensus         7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~   86 (156)
T PF15627_consen    7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS   86 (156)
T ss_pred             CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence            34567888888875432211   33333  344556799999999999999999999999986432              


Q ss_pred             CcEEEEEEeCCCCCCCCeeEEEEEechhhhhhh
Q 031128           65 LPIKLTVYDKDTFSLDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        65 ~~l~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~   97 (165)
                      ..+++.|.-.+..+...++|.-.++...+....
T Consensus        87 ~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~  119 (156)
T PF15627_consen   87 DPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSG  119 (156)
T ss_pred             CceEEEEEEecCCCceEeeeeceehHHHHhccC
Confidence            358888888777766689999999888777644

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.51  E-value=0.0021  Score=45.42  Aligned_cols=104  Identities=16%  Similarity=0.222  Sum_probs=70.1

Q ss_pred             EEEEEEEEEeeCCCCCCCCCCCcEEEEE--ECCe----EEecccccCCCCCeEecEEEEEEeCCC----CcEEEEEEeCC
Q 031128            6 GLLRVHVLRGVNLAVRDVVSSDPYVVIK--MGKQ----KLKTRVVKNNVNPEWNEDLTLSISDSN----LPIKLTVYDKD   75 (165)
Q Consensus         6 g~L~V~v~~a~~L~~~~~~~~dpyv~v~--~~~~----~~~T~~~~~~~~P~w~e~f~f~~~~~~----~~l~i~v~d~~   75 (165)
                      ..++|+|+.+.++...+ ...+-||.+.  .|++    ...|+...-...+.|||.+.|++.-.+    ..|.|+||+..
T Consensus         8 ~~f~i~i~~~~~~~~~~-~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~   86 (173)
T cd08693           8 EKFSITLHKISNLNAAE-RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS   86 (173)
T ss_pred             CCEEEEEEEeccCccCC-CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence            46899999999998622 2355677764  3443    335555554567999999999875432    45999999865


Q ss_pred             CCC----------------CCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCC
Q 031128           76 TFS----------------LDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSR  117 (165)
Q Consensus        76 ~~~----------------~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~  117 (165)
                      ...                .+..||.+.++|-+...       .+..|...+.+.+..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~-------~Lr~G~~~L~lW~~~  137 (173)
T cd08693          87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKG-------QLKTGDHTLYMWTYA  137 (173)
T ss_pred             ccccccccccccccccccCcceEEEEEeEEEEcccc-------hhhcCCeEEEecCCC
Confidence            321                24689999999987443       345677666666643

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.48  E-value=0.0022  Score=44.60  Aligned_cols=101  Identities=21%  Similarity=0.308  Sum_probs=68.8

Q ss_pred             EEEEEEEEEeeCCCCCCCCCCCcEEEEEE--CCeE----EecccccCCCCCeEecEEEEEEeCCC----CcEEEEEEeCC
Q 031128            6 GLLRVHVLRGVNLAVRDVVSSDPYVVIKM--GKQK----LKTRVVKNNVNPEWNEDLTLSISDSN----LPIKLTVYDKD   75 (165)
Q Consensus         6 g~L~V~v~~a~~L~~~~~~~~dpyv~v~~--~~~~----~~T~~~~~~~~P~w~e~f~f~~~~~~----~~l~i~v~d~~   75 (165)
                      ..++|+|+.+.++....  ..+-||.+.+  +++.    ..|+.+.. .++.|||.+.|++.-.+    ..|.|+||+..
T Consensus         8 ~~~~v~i~~~~~~~~~~--~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~   84 (158)
T cd08398           8 SNLRIKILCATYVNVND--IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK   84 (158)
T ss_pred             CCeEEEEEeeccCCCCC--cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence            46889999999887653  3577888754  4432    24444433 67999999999875433    45999999965


Q ss_pred             CCC----CCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeC
Q 031128           76 TFS----LDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPS  116 (165)
Q Consensus        76 ~~~----~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~  116 (165)
                      ...    ....+|.+.++|-+...       .+..|.....+.+.
T Consensus        85 ~~~~~k~~~~~iG~~ni~LFd~~~-------~Lr~G~~~L~lW~~  122 (158)
T cd08398          85 GRKGAKEEHCPLAWGNINLFDYTD-------TLVSGKMALNLWPV  122 (158)
T ss_pred             cccCCCCceEEEEEEEEEEECCCC-------hhhCCCEEEEEEcC
Confidence            321    22469999999987433       44567776666664

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.37  E-value=0.0027  Score=43.97  Aligned_cols=104  Identities=22%  Similarity=0.279  Sum_probs=68.5

Q ss_pred             EEEEEEEEEeeCCCCCCCCCCCcEEEEEE--CCe----EEecccccCCCCCeEecEEEEEEeCC----CCcEEEEEEeCC
Q 031128            6 GLLRVHVLRGVNLAVRDVVSSDPYVVIKM--GKQ----KLKTRVVKNNVNPEWNEDLTLSISDS----NLPIKLTVYDKD   75 (165)
Q Consensus         6 g~L~V~v~~a~~L~~~~~~~~dpyv~v~~--~~~----~~~T~~~~~~~~P~w~e~f~f~~~~~----~~~l~i~v~d~~   75 (165)
                      ..++|++....++........+-|+.+++  +++    ...|.....+.++.|||.+.|++.-.    +..|.|+||+.+
T Consensus         8 ~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~   87 (156)
T cd08380           8 FNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS   87 (156)
T ss_pred             CCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence            45778888888776533334566777654  433    22343333346799999999987532    245999999976


Q ss_pred             CCC--CCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeC
Q 031128           76 TFS--LDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPS  116 (165)
Q Consensus        76 ~~~--~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~  116 (165)
                      ..+  .+..||.+.++|-+...       .+..|...+.+.+.
T Consensus        88 ~~~~~~~~~iG~~~~~lFd~~~-------~L~~G~~~l~lW~~  123 (156)
T cd08380          88 EPGSKKEVPLGWVNVPLFDYKG-------KLRQGMITLNLWPG  123 (156)
T ss_pred             cCCCCcceEEEEEeEEeEcccC-------cEecCCEEEeccCC
Confidence            543  46899999999987433       44567666666654

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.35  E-value=0.015  Score=41.20  Aligned_cols=105  Identities=15%  Similarity=0.105  Sum_probs=66.3

Q ss_pred             EEEEEEEEEeeCCCCCCCCCCCcEEEEEE--CCeE---EecccccCCCCCeEecEEEEEEeCCC----CcEEEEEEeCCC
Q 031128            6 GLLRVHVLRGVNLAVRDVVSSDPYVVIKM--GKQK---LKTRVVKNNVNPEWNEDLTLSISDSN----LPIKLTVYDKDT   76 (165)
Q Consensus         6 g~L~V~v~~a~~L~~~~~~~~dpyv~v~~--~~~~---~~T~~~~~~~~P~w~e~f~f~~~~~~----~~l~i~v~d~~~   76 (165)
                      ..++|+|..+.++.........-||.+.+  +++.   .+|....-+.++.|||.+.|++.-.+    ..|.|+||+...
T Consensus        10 ~~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~   89 (178)
T cd08399          10 RKFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA   89 (178)
T ss_pred             CCEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence            35788888887433222222345666543  3332   25555555677999999999876433    459999998532


Q ss_pred             CC----------------CCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCC
Q 031128           77 FS----------------LDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSR  117 (165)
Q Consensus        77 ~~----------------~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~  117 (165)
                      .+                .+..||.+.+.|-+...       .+..|...+.+.+..
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~-------~Lr~G~~~L~~W~~~  139 (178)
T cd08399          90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRF-------LLRTGEYVLHMWQIS  139 (178)
T ss_pred             CcccccccccccccccccccceEEEEEEEEEcCCC-------ceecCCEEEEEecCC
Confidence            11                25678889988876433       456788777777754

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.24  E-value=0.0033  Score=43.82  Aligned_cols=87  Identities=21%  Similarity=0.254  Sum_probs=60.6

Q ss_pred             CCCCcEEEEEE--CCe----EEecccccCCCCCeEecEEEEEEeCCC----CcEEEEEEeCCCCCCCCeeEEEEEechhh
Q 031128           24 VSSDPYVVIKM--GKQ----KLKTRVVKNNVNPEWNEDLTLSISDSN----LPIKLTVYDKDTFSLDDKMGDAEFYITPF   93 (165)
Q Consensus        24 ~~~dpyv~v~~--~~~----~~~T~~~~~~~~P~w~e~f~f~~~~~~----~~l~i~v~d~~~~~~d~~iG~~~i~l~~l   93 (165)
                      ..++-||.+.+  +++    ..+|....-+..+.|||...|++.-.+    ..|.|+||+.+..++...+|.+.++|-+.
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            34678888765  333    235555555667899999999986433    45999999987655677999999999764


Q ss_pred             hhhhcccccCCCCceEEEEEeeCC
Q 031128           94 LEALKMRLEGLPNGTIVTKIQPSR  117 (165)
Q Consensus        94 ~~~~~~~~~~~~~g~~~~~~~~~~  117 (165)
                      ..       .+..|...+.+++..
T Consensus       108 ~g-------~Lr~G~~~l~lw~~~  124 (159)
T cd08397         108 DG-------TLRRGRQKLRVWPDV  124 (159)
T ss_pred             CC-------cEecCCEEEEEEeCC
Confidence            22       455677666666543

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=97.06  E-value=0.046  Score=37.04  Aligned_cols=90  Identities=16%  Similarity=0.254  Sum_probs=60.7

Q ss_pred             ccEEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeE---EecccccC-CCCCeEecEEEEEEeC---C------CCcEEEE
Q 031128            4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQK---LKTRVVKN-NVNPEWNEDLTLSISD---S------NLPIKLT   70 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~~---~~T~~~~~-~~~P~w~e~f~f~~~~---~------~~~l~i~   70 (165)
                      ..-.+.|++.+..+++..   ....||....++..   ..|..... +..-.|++.|.+.+.-   .      ...+.|.
T Consensus         5 ~kf~~~l~i~~l~~~p~~---~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~   81 (143)
T PF10358_consen    5 VKFQFDLTIHELENLPSS---NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS   81 (143)
T ss_pred             eeEEEEEEEEEeECcCCC---CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence            445678899999988762   23456666666443   44544333 4568999999987631   1      1238899


Q ss_pred             EEeCCCCCCCCeeEEEEEechhhhhh
Q 031128           71 VYDKDTFSLDDKMGDAEFYITPFLEA   96 (165)
Q Consensus        71 v~d~~~~~~d~~iG~~~i~l~~l~~~   96 (165)
                      |+....-++...+|.+.++|++....
T Consensus        82 v~~~~~~~~k~~lG~~~inLaey~~~  107 (143)
T PF10358_consen   82 VFEVDGSGKKKVLGKVSINLAEYANE  107 (143)
T ss_pred             EEEecCCCccceEEEEEEEHHHhhCc
Confidence            98875333336999999999998874

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=97.02  E-value=0.016  Score=45.30  Aligned_cols=84  Identities=21%  Similarity=0.345  Sum_probs=70.0

Q ss_pred             EEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCC--------CCcEEEEEEeCC-CCC
Q 031128            8 LRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDS--------NLPIKLTVYDKD-TFS   78 (165)
Q Consensus         8 L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~--------~~~l~i~v~d~~-~~~   78 (165)
                      +.|.|++|+|.+...  ...-.+..++++....|..+..+..|.||..+.+++...        ..+|++++|..+ ..+
T Consensus         2 ivl~i~egr~F~~~~--~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~   79 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP--RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTG   79 (340)
T ss_pred             EEEEEecccCCCCCC--CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCC
Confidence            678999999998763  345678889999999999998999999999999987532        245999999987 556


Q ss_pred             CCCeeEEEEEechhh
Q 031128           79 LDDKMGDAEFYITPF   93 (165)
Q Consensus        79 ~d~~iG~~~i~l~~l   93 (165)
                      ..+.||.+.++|...
T Consensus        80 ~re~iGyv~LdLRsa   94 (340)
T PF12416_consen   80 KRESIGYVVLDLRSA   94 (340)
T ss_pred             cceeccEEEEEcccc
Confidence            788999999999877

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.90  E-value=0.019  Score=40.46  Aligned_cols=106  Identities=20%  Similarity=0.251  Sum_probs=70.0

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEE--CCeE----Eeccccc--C--CCCCeEecEEEEEEeCCC----CcEE
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKM--GKQK----LKTRVVK--N--NVNPEWNEDLTLSISDSN----LPIK   68 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~--~~~~----~~T~~~~--~--~~~P~w~e~f~f~~~~~~----~~l~   68 (165)
                      ....+.|+|.++.+++..- ....+-|+.+.+  +++.    ..|+...  +  ...+.|||.+.|++.-.+    ..|.
T Consensus         6 v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~   85 (171)
T cd04012           6 VTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV   85 (171)
T ss_pred             ccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence            3456889999999998765 334677887754  4432    2443221  1  235789999999875322    4499


Q ss_pred             EEEEeCCCCC---------CCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeC
Q 031128           69 LTVYDKDTFS---------LDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPS  116 (165)
Q Consensus        69 i~v~d~~~~~---------~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~  116 (165)
                      |++|+....+         .+..||.+.++|-+...       .+..|...+.+.+.
T Consensus        86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~-------~L~~G~~~L~lW~~  135 (171)
T cd04012          86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRG-------VLRQGSLLLGLWPP  135 (171)
T ss_pred             EEEEEEecCCccccccccccceEEEEEeEeeEcchh-------hhccCCEEEEeccC
Confidence            9999976543         35799999999987543       34456666666553

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=96.77  E-value=0.0033  Score=48.02  Aligned_cols=92  Identities=17%  Similarity=0.173  Sum_probs=65.3

Q ss_pred             cccEEEEEEEEEeeCCCCCC---CCCCCcEEEEEECCe-EEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCC
Q 031128            3 NLMGLLRVHVLRGVNLAVRD---VVSSDPYVVIKMGKQ-KLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFS   78 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~---~~~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~   78 (165)
                      ...|.|.+.+.++++|....   .-+.+-||++..+.+ +.+|.+......-.|.|.|..++.+ .+.+.+-||.|+.-.
T Consensus        48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~  126 (442)
T KOG1452|consen   48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQR  126 (442)
T ss_pred             cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchh
Confidence            46799999999999997554   335688999998865 4467666556777899999988864 446888899988765


Q ss_pred             CCCeeEEEEEechhhhh
Q 031128           79 LDDKMGDAEFYITPFLE   95 (165)
Q Consensus        79 ~d~~iG~~~i~l~~l~~   95 (165)
                      ++++.=...+.+..+..
T Consensus       127 RHKLC~~g~l~~~~v~r  143 (442)
T KOG1452|consen  127 RHKLCHLGLLEAFVVDR  143 (442)
T ss_pred             hccccccchhhhhhhhh
Confidence            66554333444444433

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=96.74  E-value=0.027  Score=35.30  Aligned_cols=63  Identities=17%  Similarity=0.247  Sum_probs=46.9

Q ss_pred             CCcEEEEEECCe-EEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeEEEEEechhh
Q 031128           26 SDPYVVIKMGKQ-KLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPF   93 (165)
Q Consensus        26 ~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG~~~i~l~~l   93 (165)
                      .+-.+.+.+++. ..+|.-... .+..|++.|.+++.. ...|.|.||-.|.   ..+-|-..+.|++.
T Consensus         9 ~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdR-sRELEI~VywrD~---RslCav~~lrLEd~   72 (98)
T cd08687           9 SEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELER-SRELEIAVYWRDW---RSLCAVKFLKLEDE   72 (98)
T ss_pred             cceEEEEEEcCeEEeecccccc-ccccccceeEEEeec-ccEEEEEEEEecc---hhhhhheeeEhhhh
Confidence            567888888874 446655433 578899999999964 5679999998764   35677778888873

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=96.22  E-value=0.062  Score=36.60  Aligned_cols=71  Identities=21%  Similarity=0.299  Sum_probs=48.1

Q ss_pred             ecccccCC-CCCeEecEEEEEEeC---C-CCcEEEEEEeCCCCCCC----CeeEEEEEechhhhhhhcccccCCCCceEE
Q 031128           40 KTRVVKNN-VNPEWNEDLTLSISD---S-NLPIKLTVYDKDTFSLD----DKMGDAEFYITPFLEALKMRLEGLPNGTIV  110 (165)
Q Consensus        40 ~T~~~~~~-~~P~w~e~f~f~~~~---~-~~~l~i~v~d~~~~~~d----~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~  110 (165)
                      .|....-+ .++.|||.+.|++.-   | +..|.|+||+.+.....    ..||.+.++|-+...       .+..|...
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~-------~L~~G~~~   95 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRG-------QLRQGPQK   95 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTS-------BBEEEEEE
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCC-------cccCCCEE
Confidence            56655555 799999999999753   2 24499999997765444    699999999977633       34457776


Q ss_pred             EEEeeCC
Q 031128          111 TKIQPSR  117 (165)
Q Consensus       111 ~~~~~~~  117 (165)
                      ..+.+..
T Consensus        96 L~lW~~~  102 (142)
T PF00792_consen   96 LSLWPDE  102 (142)
T ss_dssp             EE-EET-
T ss_pred             EEEEcCC
Confidence            7766654

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=96.10  E-value=0.22  Score=35.42  Aligned_cols=70  Identities=14%  Similarity=0.217  Sum_probs=38.6

Q ss_pred             EEecccccCCCCCeEecEEEEEEeCCC---CcEEEEEEeCCCCC-C--CCeeEEEEEechhhhhhhcccccCCCCceEEE
Q 031128           38 KLKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYDKDTFS-L--DDKMGDAEFYITPFLEALKMRLEGLPNGTIVT  111 (165)
Q Consensus        38 ~~~T~~~~~~~~P~w~e~f~f~~~~~~---~~l~i~v~d~~~~~-~--d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~  111 (165)
                      .+.|.+...+.+|.|+|+|.+.+....   ..|.|++++...-. +  ...+|.+.++|-+  .+.     -...|...+
T Consensus        60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~--~g~-----~i~dg~~~L  132 (184)
T PF14429_consen   60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD--NGT-----IIQDGEHEL  132 (184)
T ss_dssp             -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB---TS------B--SEEEEE
T ss_pred             EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee--CCe-----EecCCCEEE
Confidence            456777778889999999999986543   23899999865432 1  2699999999976  211     134555555


Q ss_pred             EEe
Q 031128          112 KIQ  114 (165)
Q Consensus       112 ~~~  114 (165)
                      .++
T Consensus       133 ~v~  135 (184)
T PF14429_consen  133 PVY  135 (184)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=95.89  E-value=0.14  Score=36.72  Aligned_cols=55  Identities=18%  Similarity=0.259  Sum_probs=40.9

Q ss_pred             eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCCCC-C-CCeeEEEEEech
Q 031128           37 QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDTFS-L-DDKMGDAEFYIT   91 (165)
Q Consensus        37 ~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~~~~-~-d~~iG~~~i~l~   91 (165)
                      ..++|-+...+.+|.|+|++.+.+...   ...|.|++++..... + ...+|.+.++|-
T Consensus        53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~  112 (189)
T cd08695          53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM  112 (189)
T ss_pred             ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence            357888888889999999999988643   234889888754321 1 267899999984

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=95.00  E-value=0.13  Score=42.19  Aligned_cols=62  Identities=24%  Similarity=0.394  Sum_probs=49.6

Q ss_pred             EEecccccCCCCCeEecEEEEEEeCCC-CcEEEEEEeCCC----CCCCCeeEEEEEechhhhhhhcc
Q 031128           38 KLKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKDT----FSLDDKMGDAEFYITPFLEALKM   99 (165)
Q Consensus        38 ~~~T~~~~~~~~P~w~e~f~f~~~~~~-~~l~i~v~d~~~----~~~d~~iG~~~i~l~~l~~~~~~   99 (165)
                      ..+|.++.+..||.|.+.|.+...... +.|+++++|-+.    ....+|+|++...+..+......
T Consensus        42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~  108 (529)
T KOG1327|consen   42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGL  108 (529)
T ss_pred             ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhh
Confidence            348899999999999999887765433 558999998664    35678999999999998876554

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=94.98  E-value=0.47  Score=34.15  Aligned_cols=55  Identities=11%  Similarity=0.215  Sum_probs=40.6

Q ss_pred             eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCCC-CC---CCeeEEEEEech
Q 031128           37 QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDTF-SL---DDKMGDAEFYIT   91 (165)
Q Consensus        37 ~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~~~-~~---d~~iG~~~i~l~   91 (165)
                      ..++|-+...+.+|.|+|++.+.+...   +..|.|++++.... .+   ...+|.+.++|-
T Consensus        53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            457888888889999999999988643   24489999875421 12   357899999884

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species

Probab=94.77  E-value=0.94  Score=31.76  Aligned_cols=135  Identities=18%  Similarity=0.181  Sum_probs=76.9

Q ss_pred             EEEEEEeeCCCCCCCCCCCcEEEEEEC----------Ce-EEecccccC-----CCCCeEecEEEEEEeCCC----CcEE
Q 031128            9 RVHVLRGVNLAVRDVVSSDPYVVIKMG----------KQ-KLKTRVVKN-----NVNPEWNEDLTLSISDSN----LPIK   68 (165)
Q Consensus         9 ~V~v~~a~~L~~~~~~~~dpyv~v~~~----------~~-~~~T~~~~~-----~~~P~w~e~f~f~~~~~~----~~l~   68 (165)
                      .=.|..|.+..     ..+-||+..+.          .. ...|.+...     +..-.||..|++.+....    ..|.
T Consensus         5 ~G~I~~a~~f~-----~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~   79 (168)
T PF07162_consen    5 IGEIESAEGFE-----EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLV   79 (168)
T ss_pred             EEEEEEEECCC-----CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEE
Confidence            34567777654     34678887763          12 455555432     345779988887765432    3499


Q ss_pred             EEEEeCCCCCCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCc-EE-------eeeee
Q 031128           69 LTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGK-LV-------QNLFL  140 (165)
Q Consensus        69 i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~-------~~~~~  140 (165)
                      |+||..|..+++...|...+.|-.-.....         ..+-.|+|.......+-......++. +.       .+..+
T Consensus        80 l~V~~~D~~gr~~~~GYG~~~lP~~pG~h~---------~~v~~wrP~~~s~~~~l~~~f~G~~pel~d~~~~~~~~~R~  150 (168)
T PF07162_consen   80 LQVYSLDSWGRDRVEGYGFCHLPTQPGRHE---------VEVPTWRPVSGSIRQELRSFFVGGRPELVDPDFIASGESRF  150 (168)
T ss_pred             EEEEEEcccCCeEEeEEeEEEeCCCCceEE---------EEEEEEeecCCCHHHHhhhheecCCceEcCcchhcCccccc
Confidence            999999999999999887766632211111         13455666333222222111111111 10       13334


Q ss_pred             eeccceeeeEEEEEEEE
Q 031128          141 RLRNVEVGEVKIQLEWI  157 (165)
Q Consensus       141 ~l~~~~~G~l~l~l~~~  157 (165)
                      .++..++|.|+|++..+
T Consensus       151 ~l~t~s~G~V~v~l~vi  167 (168)
T PF07162_consen  151 GLRTESSGSVKVRLNVI  167 (168)
T ss_pred             CcEEEeeeEEEEEEEEe
Confidence            55666799999998754

Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=94.76  E-value=0.31  Score=31.10  Aligned_cols=68  Identities=25%  Similarity=0.296  Sum_probs=43.1

Q ss_pred             EEEEEEEeeCCCCCCC-CCCCcEEEEEE--CCe----EEecccccCCCCCeEecEEEEEEeCCC----CcEEEEEEeCC
Q 031128            8 LRVHVLRGVNLAVRDV-VSSDPYVVIKM--GKQ----KLKTRVVKNNVNPEWNEDLTLSISDSN----LPIKLTVYDKD   75 (165)
Q Consensus         8 L~V~v~~a~~L~~~~~-~~~dpyv~v~~--~~~----~~~T~~~~~~~~P~w~e~f~f~~~~~~----~~l~i~v~d~~   75 (165)
                      +.+.+....+...... ...+-||.+.+  +++    ...|....-...+.|||...|++.-.+    ..|.|++|+..
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK   91 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence            5566666666654432 22477888754  443    234554444566999999999875433    44999999854

Outlier of C2 family.

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=94.36  E-value=1.2  Score=31.25  Aligned_cols=70  Identities=17%  Similarity=0.235  Sum_probs=52.0

Q ss_pred             CCCcEEEEEECCeEE-ecccccC--CCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeEEEEEechhhhh
Q 031128           25 SSDPYVVIKMGKQKL-KTRVVKN--NVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLE   95 (165)
Q Consensus        25 ~~dpyv~v~~~~~~~-~T~~~~~--~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG~~~i~l~~l~~   95 (165)
                      ...-|+++.+.++.. +|+...-  ...-.|+|.|.+.+...-+.|.++||.... ..+.+|+.+.+++-....
T Consensus        36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~  108 (168)
T PF15625_consen   36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTV  108 (168)
T ss_pred             heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCcc
Confidence            456789999987544 5544332  344567899999997755679999999887 588999999999865443

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=93.48  E-value=0.49  Score=30.72  Aligned_cols=67  Identities=13%  Similarity=0.202  Sum_probs=36.2

Q ss_pred             EEEEEECC-eEEecccccCCCCCeEecEEEEEEeCCC--------CcEEEEEEeCCCCCCCCeeEEEEEechhhhhhh
Q 031128           29 YVVIKMGK-QKLKTRVVKNNVNPEWNEDLTLSISDSN--------LPIKLTVYDKDTFSLDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        29 yv~v~~~~-~~~~T~~~~~~~~P~w~e~f~f~~~~~~--------~~l~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~   97 (165)
                      ||.+.+-. +.+.|.++. +.+|.+|-+-.|.+...+        ..+.++++..-.. ....+|.+.+++..+....
T Consensus         2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~-d~~tla~~~i~l~~ll~~~   77 (107)
T PF11618_consen    2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGS-DFETLAAGQISLRPLLESN   77 (107)
T ss_dssp             EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS--EEEEEEEEE--SHHHH--
T ss_pred             EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccC-CeEEEEEEEeechhhhcCC
Confidence            56666554 445566655 789999988888886432        4599999987633 4679999999999998644

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=93.13  E-value=1.3  Score=31.36  Aligned_cols=53  Identities=15%  Similarity=0.271  Sum_probs=37.8

Q ss_pred             EecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCCC-----CCCCeeEEEEEechh
Q 031128           39 LKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDTF-----SLDDKMGDAEFYITP   92 (165)
Q Consensus        39 ~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~~~-----~~d~~iG~~~i~l~~   92 (165)
                      ++|-+..+ .+|.|+|+|.+.+...   ...|.|++++...-     .....+|.+.+||-+
T Consensus        55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            34444444 8999999999988543   23499999986532     246789999999964

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=91.37  E-value=0.96  Score=32.17  Aligned_cols=56  Identities=14%  Similarity=0.288  Sum_probs=40.6

Q ss_pred             eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCCCC------CCCeeEEEEEechh
Q 031128           37 QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDTFS------LDDKMGDAEFYITP   92 (165)
Q Consensus        37 ~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~~~~------~d~~iG~~~i~l~~   92 (165)
                      ..+.|.+...+.+|.|+|++.+.+...   ...|.|++++-+--.      ....+|.+.+||-.
T Consensus        54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~  118 (179)
T cd08696          54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR  118 (179)
T ss_pred             eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence            356778888889999999999888643   234889998843211      23579999999854

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]

Probab=90.80  E-value=0.31  Score=42.38  Aligned_cols=72  Identities=11%  Similarity=0.227  Sum_probs=58.6

Q ss_pred             CCcEEEEEECCeE-EecccccCC-CCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeEEEEEechhhhhhh
Q 031128           26 SDPYVVIKMGKQK-LKTRVVKNN-VNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        26 ~dpyv~v~~~~~~-~~T~~~~~~-~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~   97 (165)
                      .++|+.+.+.... .+|....+. .+|.|++.|...+......+.+++-+.+..+....+|.+.++...+..+.
T Consensus       138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~  211 (887)
T KOG1329|consen  138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGH  211 (887)
T ss_pred             ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccc
Confidence            4789988887544 467666666 78999999988887777789999999888866789999999998888753

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=90.49  E-value=1.5  Score=31.33  Aligned_cols=56  Identities=16%  Similarity=0.312  Sum_probs=41.0

Q ss_pred             eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCC--C-------CCCCeeEEEEEechh
Q 031128           37 QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDT--F-------SLDDKMGDAEFYITP   92 (165)
Q Consensus        37 ~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~~--~-------~~d~~iG~~~i~l~~   92 (165)
                      ....|.+...+.+|.|.|++.+.+...   ...|.|+.++-+-  -       .....+|.+.+||-.
T Consensus        56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence            356778888889999999999887542   2348999998641  1       123579999999865

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>PTZ00447 apical membrane antigen 1-like protein; Provisional

Probab=89.27  E-value=9.4  Score=30.17  Aligned_cols=67  Identities=10%  Similarity=0.260  Sum_probs=48.6

Q ss_pred             CCCcEEEEEECCeEEecccccCCCCCeE--ecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeEEEEEechh
Q 031128           25 SSDPYVVIKMGKQKLKTRVVKNNVNPEW--NEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITP   92 (165)
Q Consensus        25 ~~dpyv~v~~~~~~~~T~~~~~~~~P~w--~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG~~~i~l~~   92 (165)
                      ....|+.+..|+...+|..+.-+..-.-  .+.....+..-+..|++.+|-.... +...||.+.+.++.
T Consensus        73 ~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLv-kk~hIgdI~InIn~  141 (508)
T PTZ00447         73 YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLT-KKVHIGQIKIDINA  141 (508)
T ss_pred             ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEecccc-ceeEEEEEEecccH
Confidence            3467999999998888866654433222  3445555655567799999998766 77899999999874

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=88.92  E-value=0.18  Score=42.51  Aligned_cols=69  Identities=10%  Similarity=0.060  Sum_probs=47.5

Q ss_pred             CCCcEEEEEECCe-EEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeEEEEEechhhh
Q 031128           25 SSDPYVVIKMGKQ-KLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFL   94 (165)
Q Consensus        25 ~~dpyv~v~~~~~-~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG~~~i~l~~l~   94 (165)
                      ..+||+.+.+.-. ...+.+.+.+..|.|+++|...+.. +..+.+.|+.......+.+...+.+..++..
T Consensus        27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~-~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k   96 (694)
T KOG0694|consen   27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA-GGAKNIIVLLKSPDPKALSEAQLSLQEESQK   96 (694)
T ss_pred             hhhhhheeccceeecccccCCCCCCCchhhhheeeeeec-CCceEEEEEecCCcchhhHHHhHHHHHHHHH
Confidence            4589999888743 3355556778999999999999754 5678899998765545544444444444443

>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]

Probab=88.56  E-value=5.3  Score=35.25  Aligned_cols=101  Identities=19%  Similarity=0.259  Sum_probs=60.6

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCcEEEEEEC----Ce----EEecccccCCCCCeEecEEEEEEeCCC----CcEEEEEEeC
Q 031128            7 LLRVHVLRGVNLAVRDVVSSDPYVVIKMG----KQ----KLKTRVVKNNVNPEWNEDLTLSISDSN----LPIKLTVYDK   74 (165)
Q Consensus         7 ~L~V~v~~a~~L~~~~~~~~dpyv~v~~~----~~----~~~T~~~~~~~~P~w~e~f~f~~~~~~----~~l~i~v~d~   74 (165)
                      .++|+++.+.++....  ..|-+|.|..+    .+    ...|.-+....+|.||+...|++.-.+    ..|.|.||.-
T Consensus       344 ~frI~l~~is~~n~~~--t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~v  421 (1076)
T KOG0904|consen  344 PFRIKLVGISKVNLPE--TVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYAV  421 (1076)
T ss_pred             ceEEEEeeccccCCCc--ccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeEe
Confidence            4677777776553322  34556666544    32    244555555678999999999886443    3377777754


Q ss_pred             C----------------CCCCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeC
Q 031128           75 D----------------TFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPS  116 (165)
Q Consensus        75 ~----------------~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~  116 (165)
                      .                .-+.+..+|.+.+.|-+..+.       +..|..+.++.+.
T Consensus       422 ~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~kd~-------LrtG~~~Lh~W~~  472 (1076)
T KOG0904|consen  422 KAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDHKDQ-------LRTGEYVLHMWPS  472 (1076)
T ss_pred             echhccccccchhhhhccccccCceEEEeeeeeechhh-------hhcCceEEEecCC
Confidence            1                112345778877777665553       3456665665554

>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]

Probab=85.06  E-value=0.058  Score=45.17  Aligned_cols=57  Identities=16%  Similarity=0.227  Sum_probs=42.3

Q ss_pred             ccEEEEEEEEEeeCCCCCC-----CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEe
Q 031128            4 LMGLLRVHVLRGVNLAVRD-----VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSIS   61 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-----~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~   61 (165)
                      ..|....+++.|.++++.-     ....++++...++.+.++|+....+.+|+|||. .++..
T Consensus       278 ~~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~  339 (975)
T KOG2419|consen  278 FTGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDS  339 (975)
T ss_pred             hhhhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccc
Confidence            4445555666677665432     245789999999999999999999999999996 54443

>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function

Probab=80.05  E-value=30  Score=28.05  Aligned_cols=27  Identities=11%  Similarity=0.250  Sum_probs=20.7

Q ss_pred             CcEEEEEEeCCC-----C-CCCCeeEEEEEech
Q 031128           65 LPIKLTVYDKDT-----F-SLDDKMGDAEFYIT   91 (165)
Q Consensus        65 ~~l~i~v~d~~~-----~-~~d~~iG~~~i~l~   91 (165)
                      ..|+|.||.-..     + .+.++||.+.++|+
T Consensus        95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpld  127 (460)
T PF06219_consen   95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLD  127 (460)
T ss_pred             ceEEEEEEECCCCCcccccccceEEEEEEEEec
Confidence            349999998432     2 46789999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	165
3jzy_A	510	Crystal Structure Of Human Intersectin 2 C2 Domain		4e-10
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		1e-09
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		5e-08
2cm6_A	166	Crystal Structure Of The C2b Domain Of Rabphilin3a		7e-08
3rpb_A	140	The C2b-Domain Of Rabphilin: Structural Variations		8e-08
2cm5_A	166	Crystal Structure Of The C2b Domain Of Rabphilin Le		2e-07
3b7y_A	153	Crystal Structure Of The C2 Domain Of The E3 Ubiqui		2e-07
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		2e-07
3m7f_B	176	Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX		6e-07
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		1e-06
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		1e-06
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		4e-06
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		6e-06
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		6e-06
1rh8_A	142	Three-Dimensional Structure Of The Calcium-Free Pic		2e-05
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		3e-05
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		3e-05
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		3e-05
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		5e-05
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		7e-05
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		7e-05
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		8e-05
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		8e-05
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		9e-05
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		9e-05
1ugk_A	138	Solution Structure Of The First C2 Domain Of Synapt		3e-04
3nsj_A	540	The X-Ray Crystal Structure Of Lymphocyte Perforin		7e-04

>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 5   MGLLRVHVLRGVNL-AVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDS 63
           +G L VHV+    L A +    S+PY  I MG Q   TR +++ +NP+WN +    I D 
Sbjct: 386 IGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDL 445
Query: 64  NLPI-KLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKI 113
              +  LT++D+D FS DD +G  E  +       K+R E    G +  ++
Sbjct: 446 YQDVLCLTLFDRDQFSPDDFLGRTEIPVA------KIRTEQESKGPMTRRL 490

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 5  MGLLRVHVLRGVNLAVRDVVS-SDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDS 63
          +G+L+V VL+  +L   D    SDP+ ++++G  +L+T  V  N+NPEWN+  T  I D 
Sbjct: 12 VGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI 71
Query: 64 NLPIKLTVYDKDTFSLDDKMG 84
          +  +++TV+D+D     D +G
Sbjct: 72 HDVLEVTVFDEDGDKPPDFLG 92

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 8/89 (8%)
Query: 7   LLRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQK-------LKTRVVKNNVNPEWNEDLTL 58
           +LRV V+ G++LA +D+  +SDPYV + +           ++T+ +K  +NP+WNE+   
Sbjct: 22  ILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 81
Query: 59  SISDSNLPIKLTVYDKDTFSLDDKMGDAE 87
            ++ SN  +   V+D++  + DD +G  +
Sbjct: 82  RVNPSNHRLLFEVFDENRLTRDDFLGQVD 110

>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a Length = 166

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 9/111 (8%)
Query: 5   MGLLRVHVLRGVNLAVRDVVS-SDPYVVI----KMGKQ-KLKTRVVKNNVNPEWNEDLTL 58
            G L V ++R V+LA  D    SDP+V +     MGK+ K KT++ K  +NPE+NE+   
Sbjct: 36  QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 95
Query: 59  SISDSNLPIK---LTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPN 106
            I  S+L  K   ++V+D D    +D +G  +  I+   E LK   E L N
Sbjct: 96  DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKN 146

>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A Janus-Faced Domain Length = 140

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 9/111 (8%)
Query: 5   MGLLRVHVLRGVNLAVRDVVS-SDPYVVI----KMGKQ-KLKTRVVKNNVNPEWNEDLTL 58
            G L V ++R V+LA  D    SDP+V +     MGK+ K KT++ K  +NPE+NE+   
Sbjct: 14  QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 73
Query: 59  SISDSNLPIK---LTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPN 106
            I  S+L  K   ++V+D D    +D +G  +  I+   E LK   E L N
Sbjct: 74  DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKN 124

>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin Length = 166

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 9/111 (8%)
Query: 5   MGLLRVHVLRGVNLAVRDVVS-SDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTL 58
            G L V ++R V+LA  D    SDP+V + +      K K KT++ K  +NPE+NE+   
Sbjct: 36  QGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFY 95
Query: 59  SISDSNLPIK---LTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPN 106
            I  S+L  K   ++V+D D    +D +G  +  I+   E LK   E L N
Sbjct: 96  DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKN 146

>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 7   LLRVHVLRGVNLAVRDVV-SSDPYVVIKMGK------QKLKTRVVKNNVNPEWNEDLTLS 59
           ++RV V+ G+ LA +D++ +SDPYV + +          ++T+ +K ++NP+WNE++   
Sbjct: 21  IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80
Query: 60  ISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITP 92
           +      +   V+D++  + DD +G  +  + P
Sbjct: 81  VHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYP 113

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 26  SDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTV--YDKDTFS 78
           SDPYV +K+      + K KT+ +K+++NPEWNE     + +S+   +L+V  +D D  S
Sbjct: 193 SDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTS 252
Query: 79  LDDKMGDAEFYITPFLEA 96
            +D MG   F I+   +A
Sbjct: 253 RNDFMGSLSFGISELQKA 270

>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 7   LLRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQ------KLKTRVVKNNVNPEWNEDLTLS 59
           ++RV V+ G+ LA +D++ +SDPYV + +          ++T+ +K ++NP+WNE++   
Sbjct: 9   VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68
Query: 60  ISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPF 93
           +      I   V+D++  + DD +G  +  + P 
Sbjct: 69  VLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPL 102

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 6   GLLRVHVLRGVNLAVRDVVSS-DPYVVIKMGKQKLKTRVVKN-NVNPEWNEDLTLSISDS 63
           G L V ++    L   D +++ DPYV +    Q  K+ V +     PEWNE    ++S+ 
Sbjct: 10  GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69
Query: 64  NLPIKLTVYDKDTFSLDDKMGDAEFYITP-FLEA 96
              +K  ++DKD  + DD +G+A   + P F+E 
Sbjct: 70  TTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEG 103

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 25 SSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKD 75
          SSDPYV +++GK K +T+ +  N+NP W E+      +S+  IK+ V D+D
Sbjct: 37 SSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDED 87

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 26  SDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTV--YDKDTFS 78
           SDPYV +K+      + K KT+ +K ++NPEWNE     + +S+   +L+V  +D D  S
Sbjct: 52  SDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTS 111
Query: 79  LDDKMGDAEFYITPFLEA 96
            +D MG   F I+   +A
Sbjct: 112 RNDFMGSLSFGISELQKA 129

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 10/85 (11%)
Query: 26  SDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLTLSI--SDSNLPIKLTVYDKDTFS 78
           SDPYV +K+      + K KT+ +++ +NP+WNE  T  +  SD +  + + ++D D  +
Sbjct: 38  SDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTT 97
Query: 79  LDDKMGDAEFYITPFLEALKMRLEG 103
            +D MG   F ++   E +KM   G
Sbjct: 98  RNDFMGSLSFGVS---ELMKMPASG 119

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 11/104 (10%)
Query: 8   LRVHVLRGVNLAVRDVVS-SDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLTLSI- 60
           L V V    NL   D    SDPYV +K+      + K KT+ +++ +NP+WNE  T  + 
Sbjct: 18  LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 61  -SDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEG 103
            SD +  + + ++D D  + +D MG   F ++   E +KM   G
Sbjct: 78  PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVS---ELMKMPASG 118

>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 19/100 (19%)
Query: 5   MGLLRVHVLRGVNLAVRDVVS-SDPYVVIKM--------------GKQKLKTRVVKNNVN 49
           +G L +H+L+  NL  RD    SDP+V + +               + K +T+ V+ ++N
Sbjct: 17  LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76
Query: 50  PEWNEDLTL-SISDSNL---PIKLTVYDKDTFSLDDKMGD 85
           PEWN+ +   SIS   L    +++TV+D D FS +D +G+
Sbjct: 77  PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGE 116

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 8   LRVHVLRGVNLAVRDVVS-SDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSISDS 63
           L V +L+ ++L  +D    SDPYV I +    K+K +T+V +  +NP +NE    S+  +
Sbjct: 22  LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 64  NLP---IKLTVYDKDTFSLDDKMG 84
            L    +  +VYD D FS  D +G
Sbjct: 82  ELAQRKLHFSVYDFDRFSRHDLIG 105

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 26  SDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLT--VYDKDTFS 78
           SDPYV +K+        K KTR VK  +NP WNE    ++   ++  +L+  V+D D  S
Sbjct: 41  SDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLKPGDVERRLSVEVWDWDRTS 100
Query: 79  LDDKMGDAEFYITPFLEA 96
            +D MG   F ++  L+A
Sbjct: 101 RNDFMGAMSFGVSELLKA 118

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 8   LRVHVLRGVNLAVRDVVS-SDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSISDS 63
           L V +L+ ++L  +D    SDPYV I +    K+K +T+V +  +NP +NE    S+  +
Sbjct: 23  LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 82
Query: 64  NLP---IKLTVYDKDTFSLDDKMG 84
            L    +  +VYD D FS  D +G
Sbjct: 83  ELAQRKLHFSVYDFDRFSRHDLIG 106

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 8   LRVHVLRGVNLAVRDVV-SSDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSISDS 63
           L V +++   L   D+  +SDPYV + +    K+K +T+V +  +NP +NE  T  +  S
Sbjct: 21  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 64  NLPIK---LTVYDKDTFSLDDKMGD 85
            L  K   + VYD D FS  D +G+
Sbjct: 81  ELAGKTLVMAVYDFDRFSKHDIIGE 105

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 16/90 (17%)
Query: 8   LRVHVLRGVNLAVRDVV-SSDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSISDS 63
           L V +++   L  +D   +SDP+V I +    K KL+T+V + N+NP WNE         
Sbjct: 28  LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF----E 83
Query: 64  NLPIK--------LTVYDKDTFSLDDKMGD 85
             P +        L V D D FS +D +G+
Sbjct: 84  GFPYEKVVQRILYLQVLDYDRFSRNDPIGE 113

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 8   LRVHVLRGVNLAVRDVV-SSDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSISDS 63
           L V +++   L   D+  +SDPYV + +    K+K +T+V +  +NP +NE  T  +  S
Sbjct: 19  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 64  NLPIK---LTVYDKDTFSLDDKMGD 85
            L  K   + VYD D FS  D +G+
Sbjct: 79  ELGGKTLVMAVYDFDRFSKHDIIGE 103

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 8   LRVHVLRGVNLAVRDVVS-SDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLTLSI- 60
           L V V    NL   D    SDPYV +K+      + K KT+ +++ +NP+WNE  T  + 
Sbjct: 20  LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 61  -SDSNLPIKLTVYDKDTFSLDDKMGDAEFYIT 91
            SD +  + + ++D D  + +D  G   F ++
Sbjct: 80  PSDKDRRLSVEIWDWDRTTRNDFXGSLSFGVS 111

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 8   LRVHVLRGVNLAVRDVV-SSDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSISDS 63
           L V +++   L   D+  +SDPYV + +    K+K +T+V +  +NP +NE  T  +  S
Sbjct: 44  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 64  NLPIK---LTVYDKDTFSLDDKMGD 85
            L  K   + VYD D FS  D +G+
Sbjct: 104 ELGGKTLVMAVYDFDRFSKHDIIGE 128

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 8   LRVHVLRGVNLAVRDVV-SSDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSISDS 63
           L V +++   L   D+  +SDPYV + +    K+K +T+V +  +NP +NE  T  +  S
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 64  NLPIK---LTVYDKDTFSLDDKMGD 85
            L  K   + VYD D FS  D +G+
Sbjct: 96  ELGGKTLVMAVYDFDRFSKHDIIGE 120

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 8   LRVHVLRGVNLAVRDVV-SSDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSISDS 63
           L V +++   L   D+  +SDPYV + +    K+K +T+V +  +NP +NE  T  +  S
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 64  NLPIK---LTVYDKDTFSLDDKMGD 85
            L  K   + VYD D FS  D +G+
Sbjct: 96  ELGGKTLVMAVYDFDRFSKHDIIGE 120

>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Iv From Human Fetal Brain (Kiaa1342) Length = 138

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 14  RGVNLAVRDVVSSDPYV---VIKMGKQKLKTRVVKNNVNPEWNEDLTL----SISDSNLP 66
           RG+       ++SDPY+   ++   K K+KTRV++  ++P ++E  T           L 
Sbjct: 32  RGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELA 91
Query: 67  IKLTVYDKDTFSLDDKMGD 85
           +  T+   D FS DD +G+
Sbjct: 92  LHFTILSFDRFSRDDIIGE 110

>pdb|3NSJ|A Chain A, The X-Ray Crystal Structure Of Lymphocyte Perforin Length = 540

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 25  SSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLS--ISDSNLPIKLTVYDKDTFSLDDK 82
           ++D Y+ +  G Q+ +T VV NN NP W + +     +  +  P+++ V+D D    DD 
Sbjct: 413 ATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDL 472
Query: 83  MGDAE 87
           +G  +
Sbjct: 473 LGSCD 477

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	165
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	9e-37
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	2e-34
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	8e-33
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	2e-32
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	2e-30
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	3e-30
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	3e-27
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	1e-26
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	1e-26
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	3e-22
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	4e-22
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	2e-21
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	2e-21
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	2e-21
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	2e-20
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-20
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	6e-16
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	3e-20
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	5e-16
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	4e-20
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	2e-19
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	2e-19
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	6e-19
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	9e-19
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	2e-18
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	2e-18
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	4e-18
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	1e-17
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	2e-17
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	2e-17
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	4e-17
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	4e-17
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	5e-17
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	1e-16
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	2e-16
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	3e-16
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	6e-16
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	8e-16
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	2e-15
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	3e-15
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	5e-14
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	1e-09
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	2e-06
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	1e-05
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	6e-04

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  122 bits (308), Expect = 9e-37
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 8/122 (6%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLS 59
               +G+L+V VL+  +L   D    SDP+ ++++G  +L+T  V  N+NPEWN+  T  
Sbjct: 8   DVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFP 67

Query: 60  ISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEA-------LKMRLEGLPNGTIVTK 112
           I D +  +++TV+D+D     D +G     +    +            LE    G I  +
Sbjct: 68  IKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLE 127

Query: 113 IQ 114
           + 
Sbjct: 128 MD 129

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  117 bits (294), Expect = 2e-34
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 2/97 (2%)

Query: 5   MGLLRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQKLKTRVVKN-NVNPEWNEDLTLSISD 62
            G L V ++    L   D + + DPYV +    Q  K+ V +     PEWNE    ++S+
Sbjct: 9   HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE 68

Query: 63  SNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKM 99
               +K  ++DKD  + DD +G+A   + P      +
Sbjct: 69  GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSI 105

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score =  113 bits (285), Expect = 8e-33
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 2/101 (1%)

Query: 3   NLMGLLRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSIS 61
            +   L++ V+       +       PYV + +  Q  KT    N  +P+W + LT+ ++
Sbjct: 33  TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT 92

Query: 62  DSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLE 102
             +  +   V+   T   D  +G A   I   L++  M+LE
Sbjct: 93  PVS-KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLE 132

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score =  111 bits (280), Expect = 2e-32
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 5  MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSN 64
           G+LRV V    N+        DP V +    +K KT+ V N +NP WNE L   +    
Sbjct: 6  SGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIP 65

Query: 65 L----PIKLTVYDKDTFSLDDKMGDAEF 88
          L     + + V D +T   +  +G A  
Sbjct: 66 LDFSSSLGIIVKDFETIGQNKLIGTATV 93

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score =  106 bits (267), Expect = 2e-30
 Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 7/91 (7%)

Query: 5   MGLLRVHVLRGVNLAVRDVV-SSDPYVVIKMG------KQKLKTRVVKNNVNPEWNEDLT 57
             ++RV V+ G+ LA +D++ +SDPYV + +          ++T+ +K ++NP+WNE++ 
Sbjct: 19  SRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEIL 78

Query: 58  LSISDSNLPIKLTVYDKDTFSLDDKMGDAEF 88
             +      +   V+D++  + DD +G  + 
Sbjct: 79  FRVHPQQHRLLFEVFDENRLTRDDFLGQVDV 109

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score =  107 bits (268), Expect = 3e-30
 Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 17/156 (10%)

Query: 5   MGLLRVHVLRGVNLAVRDVV-SSDPYVVIKMG------KQKLKTRVVKNNVNPEWNEDLT 57
             ++RV V+ G+ LA +D++ +SDPYV + +          ++T+ +K ++NP+WNE++ 
Sbjct: 7   TRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEIL 66

Query: 58  LSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSR 117
             +      I   V+D++  + DD +G  +  + P                 + +    +
Sbjct: 67  FRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPL----------PTENPRMERPYTFK 116

Query: 118 ENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQ 153
           +  L   SH     G L   +    +N    E   Q
Sbjct: 117 DFVLHPRSHKSRVKGYLRLKMTYLPKNGSEDENADQ 152

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 98.4 bits (245), Expect = 3e-27
 Identities = 23/136 (16%), Positives = 47/136 (34%), Gaps = 18/136 (13%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVV------------SSDPYVVIKMGKQKL-KTRVVKNN 47
           M    GLL++ +   V+L                    DPY+ + +   ++ +T   +  
Sbjct: 1   MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKT 60

Query: 48  VNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEG---- 103
            +P W+++    + +    I+L V+       DD + +        L+      E     
Sbjct: 61  NSPAWHDEFVTDVCNGR-KIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL 119

Query: 104 LPNGTIVTKIQPSREN 119
            P G +   I  S  +
Sbjct: 120 EPEGKVYVIIDLSGSS 135

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 97.2 bits (242), Expect = 1e-26
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 12/105 (11%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLS 59
                  + + V+    L  +D   SSDPYV +++GK K +T+ +  N+NP W E+    
Sbjct: 12  TSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFE 71

Query: 60  ISDSNLPIKLTVYDKD-----------TFSLDDKMGDAEFYITPF 93
             +S+  IK+ V D+D               DD +G     +   
Sbjct: 72  CHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL 116

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score =  103 bits (258), Expect = 1e-26
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 2/96 (2%)

Query: 9   RVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNL--P 66
            V   R  +L      ++D Y+ +  G Q+ +T VV NN NP W + +       +   P
Sbjct: 397 VVSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGP 456

Query: 67  IKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLE 102
           +++ V+D D    DD +G  +         +   L 
Sbjct: 457 LRVQVWDADYGWDDDLLGSCDRSPHSGFHEVTCELN 492

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 85.1 bits (211), Expect = 3e-22
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 9/91 (9%)

Query: 6  GLLRVHVLRGVNLAVRDVV----SSDPYVVIKMG---KQKLKTRVVKNNVNPEWNEDLTL 58
              V VLR   +          + DPYV + +      + +TR   N++NP WNE    
Sbjct: 3  HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62

Query: 59 SISD-SNLPIKLTVYDKDTFSLDDKMGDAEF 88
           +       +++T+ D +    D+ +G A F
Sbjct: 63 ILDPNQENVLEITLMDANYVM-DETLGTATF 92

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 85.9 bits (213), Expect = 4e-22
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLTLS 59
            +L V V    NL   D    SDPYV +K+      + K KT+ +K ++NPEWNE     
Sbjct: 31  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 90

Query: 60  ISDSNLPIKL--TVYDKDTFSLDDKMGDAEF 88
           + +S+   +L   ++D D  S +D MG   F
Sbjct: 91  LKESDKDRRLSVEIWDWDLTSRNDFMGSLSF 121

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 84.3 bits (208), Expect = 2e-21
 Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 13/102 (12%)

Query: 6   GLLRVHVLRGVNLAVRDV-----------VSSDPYVVIKMGKQKL-KTRVVKNNVNPEWN 53
           G LRV +   V L                   DPY+ + + + ++ +T   +    P +N
Sbjct: 29  GYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYN 88

Query: 54  EDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLE 95
           E+   +++D    ++L V+ +     D  + +        L 
Sbjct: 89  EEFCANVTDGG-HLELAVFHETPLGYDHFVANCTLQFQELLR 129

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 83.2 bits (206), Expect = 2e-21
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 12/103 (11%)

Query: 8   LRVHVLRGVNLAVRDVV-SSDPYVVIKM--GKQKLKTRVVKNNVNPEWNEDLTLSISDSN 64
           +R+ VL   NLA +D     DP+  I +    Q   T  VKN ++P+WN+   L +  ++
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD 66

Query: 65  LPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNG 107
             I ++V++          G        FL  +++    +   
Sbjct: 67  -SITISVWNHKKIHKKQGAG--------FLGCVRLLSNAISRL 100

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 80.9 bits (200), Expect = 2e-20
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 7/90 (7%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSIS 61
             L V +++   L   D+  +SDPYV + +    K+K +T+V +  +NP +NE  T  + 
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93

Query: 62  DSNLPIK---LTVYDKDTFSLDDKMGDAEF 88
            S L  K   + VYD D FS  D +G+ + 
Sbjct: 94  YSELGGKTLVMAVYDFDRFSKHDIIGEFKV 123

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 84.1 bits (208), Expect = 2e-20
 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 7/94 (7%)

Query: 5   MGLLRVHVLRGVNLAVRDVV-SSDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSI 60
              L V +++   L   D+  +SDPYV + +    K+K +T+V +  +NP +NE  T  +
Sbjct: 18  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 77

Query: 61  SDSNLP---IKLTVYDKDTFSLDDKMGDAEFYIT 91
             S L    + + VYD D FS  D +G+ +  + 
Sbjct: 78  PYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMN 111

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 72.1 bits (177), Expect = 6e-16
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 9/88 (10%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQ-----KLKTRVVKNNVNPEWNEDLTLS 59
           G L V +L   NL   DV   SDPYV I + +      K KT + KN +NP +NE  +  
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209

Query: 60  ISDSNLP---IKLTVYDKDTFSLDDKMG 84
           +    +    + +TV D D    +D +G
Sbjct: 210 VPFEQIQKVQVVVTVLDYDKIGKNDAIG 237

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 83.7 bits (207), Expect = 3e-20
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 7/91 (7%)

Query: 5   MGLLRVHVLRGVNLAVRDVV-SSDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSI 60
              L V +L+ ++L  +D    SDPYV I +    K+K +T+V +  +NP +NE    S+
Sbjct: 19  SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSV 78

Query: 61  SDSNLP---IKLTVYDKDTFSLDDKMGDAEF 88
             + L    +  +VYD D FS  D +G    
Sbjct: 79  PLAELAQRKLHFSVYDFDRFSRHDLIGQVVL 109

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 72.6 bits (178), Expect = 5e-16
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 9/88 (10%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQ-----KLKTRVVKNNVNPEWNEDLTLS 59
           GLL V +++  NL   D+   SDPYV   +  +     K KT + KN +NP +NE L   
Sbjct: 152 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 211

Query: 60  ISDSNLP---IKLTVYDKDTFSLDDKMG 84
           ++  ++    + + V D D    ++ +G
Sbjct: 212 VAPESVENVGLSIAVVDYDCIGHNEVIG 239

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 80.5 bits (199), Expect = 4e-20
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 7/90 (7%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSIS 61
             L V +++   L   D+  +SDPYV + +    K+K +T+V +  +NP +NE  T  + 
Sbjct: 42  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 101

Query: 62  DSNLPIK---LTVYDKDTFSLDDKMGDAEF 88
            S L  K   + VYD D FS  D +G+ + 
Sbjct: 102 YSELGGKTLVMAVYDFDRFSKHDIIGEFKV 131

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 83.1 bits (204), Expect = 2e-19
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 6   GLLRVHVLRGVNL---AVRDVVS-SDPYVVIKMG---KQKLKTRVVKNNVNPEWNEDLTL 58
               V VLR   +   A  D++   DPYV + +      + +TR   N++NP WNE    
Sbjct: 18  HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 77

Query: 59  SISDSNLP-IKLTVYDKDTFSLDDKMGDAEF 88
            +  +    +++T+ D +    D+ +G A F
Sbjct: 78  ILDPNQENVLEITLMDANYVM-DETLGTATF 107

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 78.2 bits (193), Expect = 2e-19
 Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 8   LRVHVLRGVNLAVRDVVSSDPYVVIKM----GKQKLKTRVVKNNVNPEWNEDLTLSISDS 63
           L V  L  V          D YV   +    G  + +T + K  ++  W E L L +++ 
Sbjct: 28  LFVTRLEAVTSNHDG--GCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEE 85

Query: 64  NLPIK---LTVYDKDTFSLDDKMGDAEF 88
            LP     LT+   D FS     G+   
Sbjct: 86  ELPTATLTLTLRTCDRFSRHSVAGELRL 113

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 77.0 bits (190), Expect = 6e-19
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 8/91 (8%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLS-I 60
             L V +++   L  +D   +SDP+V I +    K KL+T+V + N+NP WNE       
Sbjct: 26  STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF 85

Query: 61  SDSNLPIK---LTVYDKDTFSLDDKMGDAEF 88
               +  +   L V D D FS +D +G+   
Sbjct: 86  PYEKVVQRILYLQVLDYDRFSRNDPIGEVSI 116

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 76.6 bits (189), Expect = 9e-19
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 6   GLLRVHVLRGVNLAVRDV--VSSDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLS- 59
               V++     L   D   ++SDPY+ + +    K K+KTRV++  ++P ++E  T   
Sbjct: 22  KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81

Query: 60  ISDSNLPIK---LTVYDKDTFSLDDKMGDAEF 88
           I  + +       T+   D FS DD +G+   
Sbjct: 82  IPYTQIQELALHFTILSFDRFSRDDIIGEVLI 113

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 76.2 bits (188), Expect = 2e-18
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 10/93 (10%)

Query: 6   GLLRVHVLRGVNLAVRDVVS--SDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLTL 58
             L VHV     LA  D     S+PYV   +      + K KT + ++ VNP ++E L  
Sbjct: 23  QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRY 82

Query: 59  SISDSNLPIK---LTVYDKDTFSLDDKMGDAEF 88
            I +S L  +    +V+    F  +  +G+AE 
Sbjct: 83  EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEI 115

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 75.9 bits (187), Expect = 2e-18
 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 10/93 (10%)

Query: 6   GLLRVHVLRGVNLAVRDVVSSDPYVVI-----KMGKQKLKTRVVKNNVNPEWNEDLTLSI 60
             L V V    NL       SDPYV +     K    + KT V K  +NP +++    S+
Sbjct: 24  NKLIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSV 83

Query: 61  SDSNLPIK---LTVYDKDTFSLDDK--MGDAEF 88
           S   +  +   + V +   F   DK  +G    
Sbjct: 84  SLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLV 116

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 75.1 bits (185), Expect = 4e-18
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 10/93 (10%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLTLS 59
             L+  ++R   L   D    +DPYV + +        KL+T+ ++N  NP WNE L   
Sbjct: 29  SNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYH 88

Query: 60  -ISDSNLPIK---LTVYDKDTFSLDDKMGDAEF 88
            I++ ++  K   ++V D+D F  ++ +G+  F
Sbjct: 89  GITEEDMQRKTLRISVCDEDKFGHNEFIGETRF 121

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 74.0 bits (182), Expect = 1e-17
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 19/103 (18%)

Query: 5   MGLLRVHVLRGVNLAVRDV-VSSDPYVVIKM--------------GKQKLKTRVVKNNVN 49
           +G L +H+L+  NL  RD    SDP+V + +               + K +T+ V+ ++N
Sbjct: 17  LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76

Query: 50  PEWNEDLT-LSISDSNLPIK---LTVYDKDTFSLDDKMGDAEF 88
           PEWN+ +   SIS   L  K   +TV+D D FS +D +G+   
Sbjct: 77  PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLI 119

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 73.1 bits (180), Expect = 2e-17
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 9/92 (9%)

Query: 6   GLLRVHVLRGVNLAVRDVVSSDPYVVI-----KMGKQKLKTRVVKNNVNPEWNEDLTLS- 59
           G L + V+   +L   D    +PYV            K KT++ +   NP +NE L  S 
Sbjct: 20  GTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSG 79

Query: 60  ISDSNLPIK---LTVYDKDTFSLDDKMGDAEF 88
            S   L  +   L+V   ++   +  +G    
Sbjct: 80  YSKETLRQRELQLSVLSAESLRENFFLGGITL 111

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 73.1 bits (179), Expect = 2e-17
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 7/102 (6%)

Query: 4   LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDS 63
           +M LL V V +      ++    + YV +K+   K  T  V+ +  P W +D    I+  
Sbjct: 3   VMSLLCVGVKKAKFDGAQE--KFNTYVTLKVQNVKSTTIAVRGS-QPSWEQDFMFEINRL 59

Query: 64  NLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLP 105
           +L + + V++K     D  +G       P     +   EG  
Sbjct: 60  DLGLTVEVWNKGLIW-DTMVG---TVWIPLRTIRQSNEEGPG 97

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 72.5 bits (178), Expect = 4e-17
 Identities = 24/97 (24%), Positives = 33/97 (34%), Gaps = 14/97 (14%)

Query: 6   GLLRVHVLRGVNLAVRDVV--------SSDPYVVIKM---GKQKLKTRVVKNNVNPEWNE 54
             L V V+   +L               S+PYV I +    K   +T V +    P + E
Sbjct: 26  NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85

Query: 55  DLTLSISDSNLPIK---LTVYDKDTFSLDDKMGDAEF 88
             T  I       +   LTV D D FS    +G    
Sbjct: 86  RYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSV 122

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 72.4 bits (178), Expect = 4e-17
 Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 6   GLLRVHVLRGVNLAVRDVVSSDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLTLSI 60
            +L +H++ G  L  +   + DPYV I +       +  KT+ V +  +P ++E     +
Sbjct: 27  RVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPV 86

Query: 61  SDSNLPIKL--TVYDKDTFS-LDDKMGDAEF 88
            + +   +L  TV+++ + S     +G   F
Sbjct: 87  QEEDDQKRLLVTVWNRASQSRQSGLIGCMSF 117

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 72.0 bits (177), Expect = 5e-17
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 9/88 (10%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVIKM--GKQKL---KTRVVKNNVNPEWNEDLTLS 59
             + V++++  NL   D+  +SDPYV + +    +++   KT   K N+NP +NE     
Sbjct: 16  NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFD 75

Query: 60  ISDSNLP---IKLTVYDKDTFSLDDKMG 84
           I    L    I +TV DKD  S +D +G
Sbjct: 76  IPTEKLRETTIIITVMDKDKLSRNDVIG 103

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 71.7 bits (176), Expect = 1e-16
 Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 10/93 (10%)

Query: 6   GLLRVHVLRGVNLAVRDV-VSSDPYVVIKM------GKQKLKTRVVKNNVNPEWNEDLTL 58
               + +++  NL+           + + +           +TR +  +    +NE   +
Sbjct: 43  KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV 102

Query: 59  SISDSNLPIK---LTVYDKDTFSLDDKMGDAEF 88
           S+S   L  K   + V   D   L++ +G A+ 
Sbjct: 103 SMSYPALHQKTLRVDVCTTDRSHLEECLGGAQI 135

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 70.8 bits (174), Expect = 2e-16
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 9/88 (10%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVIKM--GKQKL---KTRVVKNNVNPEWNEDLTLS 59
             L V VL+  +L   DV   SDPYV + +   K+++   KT V K   N  +NE     
Sbjct: 30  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 89

Query: 60  ISDSNLP---IKLTVYDKDTFSLDDKMG 84
           I   +L    ++  V D +  S ++ +G
Sbjct: 90  IPCESLEEISVEFLVLDSERGSRNEVIG 117

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 71.0 bits (174), Expect = 3e-16
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 8/91 (8%)

Query: 6   GLLRVHVLRGVNLAVRDV--VSSDPYVVI-----KMGKQKLKTRVVKNNVNPEWNEDLTL 58
           G L V V+R  +L  +     +  PYV +          K KTR+ +  ++P + + L  
Sbjct: 30  GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVF 89

Query: 59  SISDSNLPIKLTVY-DKDTFSLDDKMGDAEF 88
             S     +++ V+ D         MG A+ 
Sbjct: 90  DESPQGKVLQVIVWGDYGRMDHKCFMGVAQI 120

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 69.8 bits (171), Expect = 6e-16
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 9/88 (10%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQ-----KLKTRVVKNNVNPEWNEDLTLS 59
           G L V +L   NL   DV   SDPYV I + +      K KT + KN +NP +NE  +  
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84

Query: 60  ISDSNLP---IKLTVYDKDTFSLDDKMG 84
           +    +    + +TV D D    +D +G
Sbjct: 85  VPFEQIQKVQVVVTVLDYDKIGKNDAIG 112

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 69.7 bits (171), Expect = 8e-16
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 9/88 (10%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLS 59
           G L V ++R V+LA  D    SDP+V + +      K K KT++ K  +NPE+NE+    
Sbjct: 37  GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96

Query: 60  ISDSNLP---IKLTVYDKDTFSLDDKMG 84
           I  S+L    + ++V+D D    +D +G
Sbjct: 97  IKHSDLAKKSLDISVWDYDIGKSNDYIG 124

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 68.1 bits (167), Expect = 2e-15
 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 12/95 (12%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVI-----KMGKQKLKTRVVKNNVNPEWNEDLTLS 59
             L V +L   +L  R+     +PYV I     +  K K +T+ VK  + P+WN+    S
Sbjct: 21  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 80

Query: 60  -ISDSNLPIK---LTVYDKDTFSLDDK--MGDAEF 88
            +       +   +T++D+     ++   +G+   
Sbjct: 81  PVHRREFRERMLEITLWDQARVREEESEFLGEILI 115

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 67.3 bits (165), Expect = 3e-15
 Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 12/95 (12%)

Query: 6   GLLRVHVLRGVNLAVRDV-VSSDPYVVI-----KMGKQKLKTRVVKNNVNPEWNEDLTLS 59
             L V +L   +L  R+     +PYV I     +  K K +T+ VK  + P+WN+    S
Sbjct: 18  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 77

Query: 60  -ISDSNLP---IKLTVYDKDTFSLDDK--MGDAEF 88
            +         +++T++D+     ++   +G+   
Sbjct: 78  PVHRREFRERMLEITLWDQARVREEESEFLGEILI 112

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 65.0 bits (158), Expect = 5e-14
 Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 7/102 (6%)

Query: 4   LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDS 63
           ++ LL V V +      ++    + YV +K+   +  T  V+ +  P W +D    I+  
Sbjct: 12  ILSLLCVGVKKAKFDGAQE--KFNTYVTLKVQNVESTTIAVRGS-QPSWEQDFMFEINRL 68

Query: 64  NLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLP 105
           +L + + V++K     D  +G       P     +   EG  
Sbjct: 69  DLGLTVEVWNKG-LIWDTMVG---TVWIPLRTIRQSNEEGPG 106

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 55.0 bits (132), Expect = 1e-09
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 10/118 (8%)

Query: 6   GLLRVHVLRGVNL-AVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSN 64
           G L VHV+    L A +    S+PY  I MG Q   TR +++ +NP+WN +    I D  
Sbjct: 387 GRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLY 446

Query: 65  L-PIKLTVYDKDTFSLDDKMGDAEFYITPFLEAL--------KMRLEGLPNGTIVTKI 113
              + LT++D+D FS DD +G  E  +               ++ L  +P G +  + 
Sbjct: 447 QDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRF 504

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 45.7 bits (107), Expect = 2e-06
 Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 16/123 (13%)

Query: 8   LRVHVLRGVNLAVRDVVSS---DPYVVIKMG-----KQKLKTRVVKNN-VNPEWNEDLTL 58
           LRV ++ G  L   +   +   DP V++++          +T V+ NN  NP W+ +   
Sbjct: 499 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 558

Query: 59  SISDSNLP-IKLTVYDKDTFSLDDKMGDAEF---YITP---FLEALKMRLEGLPNGTIVT 111
            ++  +L  ++  V D D+ S +D +G +      +      +  L    +  P+ T+  
Sbjct: 559 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSKNGDQHPSATLFV 618

Query: 112 KIQ 114
           KI 
Sbjct: 619 KIS 621

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 41.9 bits (98), Expect = 1e-05
 Identities = 14/81 (17%), Positives = 34/81 (41%), Gaps = 8/81 (9%)

Query: 8  LRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNP-EWNEDLTLSIS---DS 63
          L VH+     L  R    +D    +    Q   +RV++N  +  +++E     ++   D 
Sbjct: 23 LIVHLKTVSELRGR----ADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDR 78

Query: 64 NLPIKLTVYDKDTFSLDDKMG 84
          N  +++ +++      +  +G
Sbjct: 79 NEVLEIQIFNYSKVFSNKLIG 99

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 38.4 bits (88), Expect = 6e-04
 Identities = 10/94 (10%), Positives = 26/94 (27%), Gaps = 12/94 (12%)

Query: 8   LRVHVLRGVNLAVRDVVSSDPYVVIKM-GKQKLKTRV---VKNNVNPEWNEDLTLSISDS 63
           L++ ++    L  +       Y  + +      +T       +     W E    +   +
Sbjct: 13  LKLWIIEARELPPKK----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA 68

Query: 64  NLPIKLTVY----DKDTFSLDDKMGDAEFYITPF 93
              ++L +Y     K        +G     +   
Sbjct: 69  VRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATL 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	165
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.95
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.95
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.94
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.94
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.94
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.94
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.93
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.93
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.93
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.93
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.91
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.9
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.89
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.89
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.88
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.88
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.88
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.88
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.88
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.88
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.87
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.87
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.87
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.87
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.87
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.87
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.86
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.86
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.86
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.86
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.86
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.85
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.85
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.85
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.85
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.83
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.83
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.83
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.82
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.79
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.77
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.76
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.76
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.72
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.68
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.62
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.56
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.54
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.5
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	99.49
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	99.45
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	96.19
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	95.92
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	95.73
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	94.56
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	94.31
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	89.69

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.95  E-value=7.3e-27  Score=157.90  Aligned_cols=127  Identities=25%  Similarity=0.402  Sum_probs=110.5

Q ss_pred             CcccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEeccccc-CCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCC
Q 031128            2 ENLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVK-NNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSL   79 (165)
Q Consensus         2 ~~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~-~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~   79 (165)
                      ..+.|.|.|+|++|++|+..+ .+.+||||+++++++.++|++++ ++.||.|||+|.|.+......|.|+|||++.+++
T Consensus         6 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~~   85 (136)
T 1wfj_A            6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTE   85 (136)
T ss_dssp             CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTT
T ss_pred             CCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCCC
Confidence            357899999999999999988 78999999999999999999998 8999999999999998766779999999999999


Q ss_pred             CCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeec--cceeeeEEEEEEEE
Q 031128           80 DDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLR--NVEVGEVKIQLEWI  157 (165)
Q Consensus        80 d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~--~~~~G~l~l~l~~~  157 (165)
                      |++||++.++|.++.....                                    ..+.|++|.  +...|+|+|.++|.
T Consensus        86 d~~lG~~~i~l~~l~~~~~------------------------------------~~~~w~~L~~~~~~~G~i~l~l~~~  129 (136)
T 1wfj_A           86 DDAVGEATIPLEPVFVEGS------------------------------------IPPTAYNVVKDEEYKGEIWVALSFK  129 (136)
T ss_dssp             TCCSEEEEEESHHHHHHSE------------------------------------EEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             CceEEEEEEEHHHhccCCC------------------------------------CCcEEEEeecCCccCEEEEEEEEEE
Confidence            9999999999999855321                                    126677764  34589999999999


Q ss_pred             eCCCCCC
Q 031128          158 DIPGSRG  164 (165)
Q Consensus       158 ~~~~~~~  164 (165)
                      |...+-|
T Consensus       130 p~~~~~g  136 (136)
T 1wfj_A          130 PSGPSSG  136 (136)
T ss_dssp             ECCSCCC
T ss_pred             eCCCCCC
Confidence            9887654

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.95  E-value=1.4e-26  Score=160.01  Aligned_cols=120  Identities=18%  Similarity=0.314  Sum_probs=101.9

Q ss_pred             CcccEEEEEEEEEeeCCCCCC-C----------CCCCcEEEEEECCeE-EecccccCCCCCeEecEEEEEEeCCCCcEEE
Q 031128            2 ENLMGLLRVHVLRGVNLAVRD-V----------VSSDPYVVIKMGKQK-LKTRVVKNNVNPEWNEDLTLSISDSNLPIKL   69 (165)
Q Consensus         2 ~~~~g~L~V~v~~a~~L~~~~-~----------~~~dpyv~v~~~~~~-~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i   69 (165)
                      ....|.|+|+|++|++|++++ .          +.+||||++.++++. .+|++++++.||.|||+|.|.+.. ...|.|
T Consensus        25 ~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~L~~  103 (157)
T 2fk9_A           25 MKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD-GGHLEL  103 (157)
T ss_dssp             CCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEE
T ss_pred             ccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC-CCEEEE
Confidence            457899999999999999876 2          568999999999865 699999999999999999999865 457999


Q ss_pred             EEEeCCCCCCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccceeee
Q 031128           70 TVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGE  149 (165)
Q Consensus        70 ~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~  149 (165)
                      +|||++.+++|++||++.|++.++..+...                                + -..+.|++|.  ++|+
T Consensus       104 ~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~--------------------------------~-~~~~~W~~L~--~~G~  148 (157)
T 2fk9_A          104 AVFHETPLGYDHFVANCTLQFQELLRTTGA--------------------------------S-DTFEGWVDLE--PEGK  148 (157)
T ss_dssp             EEEECCSSSSCEEEEEEEEEHHHHHHHHTT--------------------------------C-SEEEEEEECB--SSCE
T ss_pred             EEEECCCCCCCCEEEEEEEEHHHhhcccCC--------------------------------C-CcccEEEECC--CCcE
Confidence            999999999999999999999998875100                                0 0138999997  5999


Q ss_pred             EEEEEEEE
Q 031128          150 VKIQLEWI  157 (165)
Q Consensus       150 l~l~l~~~  157 (165)
                      |+|+++|.
T Consensus       149 i~l~l~~~  156 (157)
T 2fk9_A          149 VFVVITLT  156 (157)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEE
Confidence            99999883

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.94  E-value=4.1e-26  Score=154.91  Aligned_cols=124  Identities=23%  Similarity=0.334  Sum_probs=105.4

Q ss_pred             CcccEEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCC----CCcEEEEEEeCCCC
Q 031128            2 ENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDS----NLPIKLTVYDKDTF   77 (165)
Q Consensus         2 ~~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~----~~~l~i~v~d~~~~   77 (165)
                      +...|.|.|+|++|++|+..+.+.+||||++++++++++|++++++.||.|||+|.|.+..+    ...|.|+|||++.+
T Consensus         3 s~~~g~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~   82 (140)
T 2dmh_A            3 SGSSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETI   82 (140)
T ss_dssp             SCBCCEEEEEEEEEESCCCCSSSCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCS
T ss_pred             CCCCcEEEEEEEEeeCCCCCCCCCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCC
Confidence            35678999999999999988778899999999999999999999999999999999998653    35599999999999


Q ss_pred             CCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeee---ecc----ceeeeE
Q 031128           78 SLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLR---LRN----VEVGEV  150 (165)
Q Consensus        78 ~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---l~~----~~~G~l  150 (165)
                      ++|++||++.+++.++..+...                                     +.|++   |.+    ...|+|
T Consensus        83 ~~~~~lG~~~i~l~~l~~~~~~-------------------------------------~~w~~l~~l~~~~~~~~~G~l  125 (140)
T 2dmh_A           83 GQNKLIGTATVALKDLTGDQSR-------------------------------------SLPYKLISLLNEKGQDTGATI  125 (140)
T ss_dssp             SSCCCCEEEEEEGGGTCSSSCE-------------------------------------EEEEEEEEEECTTCCEEEEEE
T ss_pred             CCCceEEEEEEEHHHhccCCCc-------------------------------------eeEEeeeeccCCCCCCCCCEE
Confidence            9999999999999988654322                                     55555   433    246999


Q ss_pred             EEEEEEEeCCCC
Q 031128          151 KIQLEWIDIPGS  162 (165)
Q Consensus       151 ~l~l~~~~~~~~  162 (165)
                      +|+++|.|.++.
T Consensus       126 ~l~~~~~p~~~~  137 (140)
T 2dmh_A          126 DLVIGYDPPSGP  137 (140)
T ss_dssp             EEEEEECCCBSS
T ss_pred             EEEEEEECCCCC
Confidence            999999997764

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.94  E-value=5.9e-26  Score=153.60  Aligned_cols=121  Identities=17%  Similarity=0.374  Sum_probs=103.4

Q ss_pred             CCcccEEEEEEEEEeeCCCCCC-CCC-----------CCcEEEEEECCeE-EecccccCCCCCeEecEEEEEEeCCCCcE
Q 031128            1 MENLMGLLRVHVLRGVNLAVRD-VVS-----------SDPYVVIKMGKQK-LKTRVVKNNVNPEWNEDLTLSISDSNLPI   67 (165)
Q Consensus         1 ~~~~~g~L~V~v~~a~~L~~~~-~~~-----------~dpyv~v~~~~~~-~~T~~~~~~~~P~w~e~f~f~~~~~~~~l   67 (165)
                      |....|.|.|+|++|++|++.+ .+.           +||||++.+++.. .+|++++++.||.|||+|.|.+... ..|
T Consensus         1 m~~~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L   79 (136)
T 1gmi_A            1 MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKI   79 (136)
T ss_dssp             CCCEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEE
T ss_pred             CcccceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEE
Confidence            6677899999999999999877 333           8999999998765 5999999999999999999998765 679


Q ss_pred             EEEEEeCCCCCCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeecccee
Q 031128           68 KLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEV  147 (165)
Q Consensus        68 ~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~  147 (165)
                      .|+|||++.+++|++||.+.+++.++..+...                                   ..+.|++|.  +.
T Consensus        80 ~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~-----------------------------------~~~~w~~L~--~~  122 (136)
T 1gmi_A           80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSR-----------------------------------HFEDWIDLE--PE  122 (136)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCS-----------------------------------EEEEEEECB--SS
T ss_pred             EEEEEeCCCCCCCCEEEEEEEEHHHhcccCCC-----------------------------------CccEEEEcC--CC
Confidence            99999999999999999999999988764211                                   127899887  58


Q ss_pred             eeEEEEEEEEeC
Q 031128          148 GEVKIQLEWIDI  159 (165)
Q Consensus       148 G~l~l~l~~~~~  159 (165)
                      |+|+|+++|.+-
T Consensus       123 G~i~l~l~~~~~  134 (136)
T 1gmi_A          123 GKVYVIIDLSGS  134 (136)
T ss_dssp             CEEEEEEEEEEE
T ss_pred             eEEEEEEEEEec
Confidence            999999999763

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.94  E-value=2.2e-26  Score=155.08  Aligned_cols=117  Identities=28%  Similarity=0.497  Sum_probs=103.5

Q ss_pred             cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCC
Q 031128            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDD   81 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~   81 (165)
                      .+.|.|.|+|++|++|+..+ .+.+||||++.+++++++|++++++.||.|||+|.|.+.+....|.|+|||++.+++|+
T Consensus        10 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~~~~   89 (133)
T 2ep6_A           10 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPD   89 (133)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEE
T ss_pred             CCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCCCCCC
Confidence            57899999999999999988 78999999999999999999999999999999999999877777999999999998999


Q ss_pred             eeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeecc-----ceeeeEEEEEEE
Q 031128           82 KMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRN-----VEVGEVKIQLEW  156 (165)
Q Consensus        82 ~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~-----~~~G~l~l~l~~  156 (165)
                      +||++.+++.++..+.                                       ..|++|..     ...|+|+|+++|
T Consensus        90 ~lG~~~i~l~~l~~~~---------------------------------------~~w~~L~~~~~~~~~~G~i~l~i~~  130 (133)
T 2ep6_A           90 FLGKVAIPLLSIRDGQ---------------------------------------PNCYVLKNKDLEQAFKGVIYLEMDL  130 (133)
T ss_dssp             ECCBCEEEGGGCCSSC---------------------------------------CEECCCBCSCTTSCCSSEEEEEEEE
T ss_pred             eeEEEEEEHHHccCCC---------------------------------------ceEEEeecCCCCCccceEEEEEEEE
Confidence            9999999998875421                                       45666653     357999999999


Q ss_pred             Ee
Q 031128          157 ID  158 (165)
Q Consensus       157 ~~  158 (165)
                      +.
T Consensus       131 ~~  132 (133)
T 2ep6_A          131 IY  132 (133)
T ss_dssp             EE
T ss_pred             Ee
Confidence            75

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.94  E-value=1.8e-25  Score=153.16  Aligned_cols=117  Identities=25%  Similarity=0.451  Sum_probs=101.4

Q ss_pred             CcccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCC---
Q 031128            2 ENLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTF---   77 (165)
Q Consensus         2 ~~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~---   77 (165)
                      +...|.|.|+|++|++|+..+ .+.+||||++.++++.++|++++++.||.|||+|.|.+..+...|.|+|||++..   
T Consensus        13 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~   92 (148)
T 3kwu_A           13 SKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKS   92 (148)
T ss_dssp             --CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHH
T ss_pred             cccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCccc
Confidence            456799999999999999988 8899999999999999999999999999999999999987777799999999985   


Q ss_pred             --------CCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccc----
Q 031128           78 --------SLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNV----  145 (165)
Q Consensus        78 --------~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~----  145 (165)
                              ++|++||++.+++.++...                                       .+.|++|...    
T Consensus        93 ~~~~~~~~~~~~~lG~~~i~l~~l~~~---------------------------------------~~~w~~L~~~~~~~  133 (148)
T 3kwu_A           93 RVKQRFKRESDDFLGQTIIEVRTLSGE---------------------------------------MDVWYNLDKRTDKS  133 (148)
T ss_dssp             HHHTTTSSCSSEEEEEEEEEGGGCCSE---------------------------------------EEEEEECBCSSTTC
T ss_pred             cccccccCCCCccEEEEEEEHHHCcCC---------------------------------------CCEEEEcccCCCCC
Confidence                    7899999999999887321                                       1677777632    


Q ss_pred             -eeeeEEEEEEEE
Q 031128          146 -EVGEVKIQLEWI  157 (165)
Q Consensus       146 -~~G~l~l~l~~~  157 (165)
                       ..|+|+|+++|.
T Consensus       134 ~~~G~i~l~l~~e  146 (148)
T 3kwu_A          134 AVSGAIRLHISVE  146 (148)
T ss_dssp             CCCCEEEEEEEEE
T ss_pred             CCceEEEEEEEEE
Confidence             479999999874

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.93  E-value=1.5e-25  Score=149.50  Aligned_cols=116  Identities=23%  Similarity=0.418  Sum_probs=100.9

Q ss_pred             cEEEEEEEEEeeCCCCC---C-CCCCCcEEEEEECC---eEEecccccCCCCCeEecEEEEEEeCC-CCcEEEEEEeCCC
Q 031128            5 MGLLRVHVLRGVNLAVR---D-VVSSDPYVVIKMGK---QKLKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDKDT   76 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~---~-~~~~dpyv~v~~~~---~~~~T~~~~~~~~P~w~e~f~f~~~~~-~~~l~i~v~d~~~   76 (165)
                      .|.|.|+|++|++|+..   + .+.+||||++.+++   ..++|++++++.||.|||+|.|.+..+ ...|.|+|||++.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            58999999999999984   4 68899999999985   788999999999999999999999644 3559999999998


Q ss_pred             CCCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccceeeeEEEEEEE
Q 031128           77 FSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEW  156 (165)
Q Consensus        77 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~  156 (165)
                      + +|++||++.++|.++..+...                                     +.|++|....+|.|++.++.
T Consensus        82 ~-~~~~iG~~~i~l~~l~~~~~~-------------------------------------~~~~~L~~~~~g~i~~~le~  123 (126)
T 1rlw_A           82 V-MDETLGTATFTVSSMKVGEKK-------------------------------------EVPFIFNQVTEMVLEMSLEV  123 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEE-------------------------------------EEEEEETTTEEEEEEEEEEC
T ss_pred             C-CCceeEEEEEEHHHccCCCcE-------------------------------------EEEEEcCCCceEEEEEEEEe
Confidence            8 589999999999988664432                                     88999999889999999886


Q ss_pred             Ee
Q 031128          157 ID  158 (165)
Q Consensus       157 ~~  158 (165)
                      .|
T Consensus       124 ~~  125 (126)
T 1rlw_A          124 AS  125 (126)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.93  E-value=3.6e-25  Score=152.44  Aligned_cols=125  Identities=22%  Similarity=0.446  Sum_probs=98.0

Q ss_pred             cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC------eEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCC
Q 031128            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK------QKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKD   75 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~------~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~   75 (165)
                      ...+.|.|+|++|++|+..+ .+.+||||++++..      ..++|++++++.||.|||+|.|.+......|.|+|||++
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d~d   96 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDEN   96 (153)
T ss_dssp             TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEECC
T ss_pred             CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEECC
Confidence            46789999999999999988 78899999999873      578999999999999999999999876667999999999


Q ss_pred             CCCCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeecc-----ceeeeE
Q 031128           76 TFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRN-----VEVGEV  150 (165)
Q Consensus        76 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~-----~~~G~l  150 (165)
                      .+++|++||++.++|.++..+....                               ..-..+.|++|..     ...|+|
T Consensus        97 ~~~~d~~iG~~~i~l~~l~~~~~~~-------------------------------~~~~~~~w~~L~~~~~~~~~~G~i  145 (153)
T 3b7y_A           97 RLTRDDFLGQVDVPLYPLPTENPRL-------------------------------ERPYTFKDFVLHPRSHKSRVKGYL  145 (153)
T ss_dssp             SSSCCEEEEEEEEECCSCCBCCTTS-------------------------------CCCCCCEEEECBCSSTTCCCCSEE
T ss_pred             CCcCCCeeEEEEEEHHHcccCCCcc-------------------------------cccccccccccccccCCCCcceEE
Confidence            9999999999999999886643210                               0001145666643     347999


Q ss_pred             EEEEEEEe
Q 031128          151 KIQLEWID  158 (165)
Q Consensus       151 ~l~l~~~~  158 (165)
                      +|+++|+|
T Consensus       146 ~l~l~~~P  153 (153)
T 3b7y_A          146 RLKMTYLP  153 (153)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEeC
Confidence            99999986

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.93  E-value=2.2e-24  Score=151.46  Aligned_cols=126  Identities=22%  Similarity=0.376  Sum_probs=102.7

Q ss_pred             ccEEEEEEEEEeeCCCC-CCCCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCe
Q 031128            4 LMGLLRVHVLRGVNLAV-RDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDK   82 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~-~~~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~   82 (165)
                      ..+.|.|+|++|++|+. .+.+.+||||+++++++.++|++++++.||.|||+|.|.+. +...|.|+|||++.+++|++
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~-~~~~L~~~V~D~d~~~~dd~  112 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLKSDVL  112 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC-TTCEEEEEEEECCSSSCCEE
T ss_pred             CceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeC-CCCEEEEEEEECCCCCCCce
Confidence            56889999999999994 44556999999999999999999999999999999999985 46679999999999999999


Q ss_pred             eEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccc-----eeeeEEEEEEEE
Q 031128           83 MGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNV-----EVGEVKIQLEWI  157 (165)
Q Consensus        83 iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~-----~~G~l~l~l~~~  157 (165)
                      ||++.++|.++.........                                ..+.|++|...     ..|+|.+.|.++
T Consensus       113 lG~~~i~l~~l~~~~~~~~~--------------------------------~~~~~~~L~~~~~~~~~~G~L~v~l~~l  160 (173)
T 2nq3_A          113 LGTAALDIYETLKSNNMKLE--------------------------------EVVVTLQLGGDKEPTETIGDLSICLDGL  160 (173)
T ss_dssp             EEEEEEEHHHHHHHTTTEES--------------------------------SEEEEEEEEESSCTTSEEEEEEEEEESE
T ss_pred             EEEEEEEHHHhcccCCCCcc--------------------------------eeEEEEECccCCCCCcccEEEEEEEeee
Confidence            99999999998875432000                                01456766543     589999999999


Q ss_pred             eCCCC
Q 031128          158 DIPGS  162 (165)
Q Consensus       158 ~~~~~  162 (165)
                      ++...
T Consensus       161 ~~~~~  165 (173)
T 2nq3_A          161 QLESE  165 (173)
T ss_dssp             ECC--
T ss_pred             ecchh
Confidence            88554

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.93  E-value=1.1e-24  Score=153.45  Aligned_cols=127  Identities=22%  Similarity=0.436  Sum_probs=96.8

Q ss_pred             CcccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC------eEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeC
Q 031128            2 ENLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK------QKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDK   74 (165)
Q Consensus         2 ~~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~------~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~   74 (165)
                      .+..|.|.|+|++|++|+..+ .+.+||||++++..      ..++|++++++.||.|||.|.|.+......|.|+|||+
T Consensus         4 ~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~   83 (176)
T 3m7f_B            4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDE   83 (176)
T ss_dssp             CTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEEC
T ss_pred             CCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEEC
Confidence            357899999999999999988 78999999999974      67899999999999999999999987666799999999


Q ss_pred             CCCCCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccc-----eeee
Q 031128           75 DTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNV-----EVGE  149 (165)
Q Consensus        75 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~-----~~G~  149 (165)
                      +.+++|++||++.++|.++.......       .                        ......|++|...     ..|+
T Consensus        84 d~~~~d~~lG~~~i~l~~l~~~~~~~-------~------------------------~~~~~~w~~L~~~~~~~~~~G~  132 (176)
T 3m7f_B           84 NRLTRDDFLGQVDVPLYPLPTENPRM-------E------------------------RPYTFKDFVLHPRSHKSRVKGY  132 (176)
T ss_dssp             C----CEEEEEEEEESCSCCBC-------------------------------------CCCCEEEECBCSSTTCCCCSE
T ss_pred             CCCCCCcEEEEEEEEHHHccccCCcc-------c------------------------ccccccEEEccccCCCCccCEE
Confidence            99999999999999999887643210       0                        0000256776542     3799


Q ss_pred             EEEEEEEEeC
Q 031128          150 VKIQLEWIDI  159 (165)
Q Consensus       150 l~l~l~~~~~  159 (165)
                      |+|.+.|+|.
T Consensus       133 l~l~l~~~p~  142 (176)
T 3m7f_B          133 LRLKMTYLPK  142 (176)
T ss_dssp             EEEEEEECC-
T ss_pred             EEEEEEEEeC
Confidence            9999999986

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.91  E-value=5.7e-23  Score=138.11  Aligned_cols=92  Identities=24%  Similarity=0.403  Sum_probs=82.2

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC--eEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCC-
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK--QKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSL-   79 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~--~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~-   79 (165)
                      ....|.|+|++|++|+..+ .+.+||||++.++.  +.++|++++++.||.|||.|.|.+.... .|.|+|||++.+++ 
T Consensus         3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~~~~   81 (132)
T 3pyc_A            3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD-SITISVWNHKKIHKK   81 (132)
T ss_dssp             SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTC-CEEEEEEEGGGTTSS
T ss_pred             CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCC-EEEEEEEECCCCCCC
Confidence            3568999999999999988 78999999999974  7899999999999999999999997654 59999999999876 


Q ss_pred             --CCeeEEEEEechhhhhh
Q 031128           80 --DDKMGDAEFYITPFLEA   96 (165)
Q Consensus        80 --d~~iG~~~i~l~~l~~~   96 (165)
                        |++||++.+++.++...
T Consensus        82 ~~d~~lG~~~i~l~~l~~~  100 (132)
T 3pyc_A           82 QGAGFLGCVRLLSNAISRL  100 (132)
T ss_dssp             TTTTEEEEEEECHHHHHHH
T ss_pred             CCCCceEEEEEeHHHhhcc
Confidence              89999999999988553

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.90  E-value=4.3e-23  Score=139.19  Aligned_cols=93  Identities=24%  Similarity=0.336  Sum_probs=81.3

Q ss_pred             ccEEEEEEEEEeeCCCCCCCCCCCcEEEEEE-----CCeEEecccccCCCCCeEecEEEEE-EeC---CCCcEEEEEEeC
Q 031128            4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLTLS-ISD---SNLPIKLTVYDK   74 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~~~~P~w~e~f~f~-~~~---~~~~l~i~v~d~   74 (165)
                      ..+.|.|+|++|++|+....+.+||||++++     ...+++|++++++.||.|||+|.|. +..   ....|.|+|||+
T Consensus        18 ~~~~L~V~V~~a~~L~~~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~   97 (134)
T 2b3r_A           18 RNGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSA   97 (134)
T ss_dssp             ETTEEEEEEEEEECCCCTTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEEC
T ss_pred             cCCEEEEEEEEeeCCCCCCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEEC
Confidence            4678999999999999733788999999998     3567899999999999999999999 653   235699999999


Q ss_pred             CCCCCCCeeEEEEEechhhhhh
Q 031128           75 DTFSLDDKMGDAEFYITPFLEA   96 (165)
Q Consensus        75 ~~~~~d~~iG~~~i~l~~l~~~   96 (165)
                      +.++++++||++.++|.++..+
T Consensus        98 d~~~~~~~lG~~~i~l~~l~~~  119 (134)
T 2b3r_A           98 ESLRENFFLGGITLPLKDFNLS  119 (134)
T ss_dssp             CSSSCCEEEEEEEEEGGGSCTT
T ss_pred             CCCCCCcEEEEEEEEhhhccCC
Confidence            9999999999999999988654

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.89  E-value=2.8e-23  Score=142.42  Aligned_cols=91  Identities=34%  Similarity=0.498  Sum_probs=82.2

Q ss_pred             cEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEeCCC--CcEEEEEEeCCC
Q 031128            5 MGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSISDSN--LPIKLTVYDKDT   76 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~~~~--~~l~i~v~d~~~   76 (165)
                      .+.|.|+|++|++|+..+ .+.+||||++++.     ...++|++++++.||.|||+|.|.+...+  ..|.|+|||++.
T Consensus        30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~  109 (149)
T 1a25_A           30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  109 (149)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC
Confidence            468999999999999988 7889999999997     46889999999999999999999987542  469999999999


Q ss_pred             CCCCCeeEEEEEechhhhh
Q 031128           77 FSLDDKMGDAEFYITPFLE   95 (165)
Q Consensus        77 ~~~d~~iG~~~i~l~~l~~   95 (165)
                      +++|++||++.++|.++..
T Consensus       110 ~~~~~~iG~~~i~l~~l~~  128 (149)
T 1a25_A          110 TSRNDFMGSLSFGISELQK  128 (149)
T ss_dssp             SSCCEEEEEEEEEHHHHTT
T ss_pred             CCCCCEEEEEEEEHHHhCc
Confidence            9999999999999998865

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.88  E-value=1.4e-22  Score=139.35  Aligned_cols=93  Identities=29%  Similarity=0.430  Sum_probs=82.5

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCC
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG---KQKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDT   76 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~~   76 (165)
                      ..+.|.|+|++|++|+..+ .+.+||||++.+.   ...++|++++++.||.|||+|.|.+...   ...|.|+|||++.
T Consensus        40 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~  119 (152)
T 1rsy_A           40 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR  119 (152)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCC
Confidence            4678999999999999988 7889999999994   5678999999999999999999988642   4569999999999


Q ss_pred             CCCCCeeEEEEEechhhhhh
Q 031128           77 FSLDDKMGDAEFYITPFLEA   96 (165)
Q Consensus        77 ~~~d~~iG~~~i~l~~l~~~   96 (165)
                      ++++++||++.++|.++..+
T Consensus       120 ~~~~~~iG~~~i~l~~l~~~  139 (152)
T 1rsy_A          120 FSKHDIIGEFKVPMNTVDFG  139 (152)
T ss_dssp             SSCCEEEEEEEEEGGGCCCS
T ss_pred             CCCCcEEEEEEEEchhccCC
Confidence            98999999999999987553

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.88  E-value=3.4e-22  Score=135.76  Aligned_cols=94  Identities=30%  Similarity=0.455  Sum_probs=82.6

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEecccccCCCCCeEecEEEEEEeC----CCCcEEEEEEeCC
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG---KQKLKTRVVKNNVNPEWNEDLTLSISD----SNLPIKLTVYDKD   75 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~~~~----~~~~l~i~v~d~~   75 (165)
                      ..+.|.|+|++|++|+..+ .+.+||||++++.   ...++|++++++.||.|||+|.|.+..    ....|.|+|||++
T Consensus        24 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d  103 (141)
T 2d8k_A           24 QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYD  103 (141)
T ss_dssp             SSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECC
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECC
Confidence            5678999999999999988 7889999999994   468899999999999999999998532    2356999999999


Q ss_pred             CCCCCCeeEEEEEechhhhhhh
Q 031128           76 TFSLDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        76 ~~~~d~~iG~~~i~l~~l~~~~   97 (165)
                      .++++++||++.+++.++..+.
T Consensus       104 ~~~~~~~iG~~~i~l~~l~~~~  125 (141)
T 2d8k_A          104 RFSRNDPIGEVSIPLNKVDLTQ  125 (141)
T ss_dssp             SSSSCEEEEEEEEETTTSCTTS
T ss_pred             CCCCCcEEEEEEEEhhhhcCCC
Confidence            9999999999999999887643

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.88  E-value=2.8e-22  Score=138.01  Aligned_cols=93  Identities=23%  Similarity=0.395  Sum_probs=81.6

Q ss_pred             cccEEEEEEEEEeeCCCCCCCCCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEe--CCCCcEEEEEEeCC
Q 031128            3 NLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSIS--DSNLPIKLTVYDKD   75 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~--~~~~~l~i~v~d~~   75 (165)
                      ...+.|.|+|++|++|+..+.+.+||||++.+.     ...++|++++++.||.|||+|.|.+.  .....|.|+|||++
T Consensus        24 ~~~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d  103 (153)
T 3fbk_A           24 AQDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRA  103 (153)
T ss_dssp             ESSSEEEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECC
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCC
Confidence            356889999999999998887889999999983     45789999999999999999999984  33355999999999


Q ss_pred             CCCC-CCeeEEEEEechhhhh
Q 031128           76 TFSL-DDKMGDAEFYITPFLE   95 (165)
Q Consensus        76 ~~~~-d~~iG~~~i~l~~l~~   95 (165)
                      .+++ |++||++.++|.++..
T Consensus       104 ~~~~~d~~lG~~~i~l~~l~~  124 (153)
T 3fbk_A          104 SQSRQSGLIGCMSFGVKSLLT  124 (153)
T ss_dssp             SSGGGCEEEEEEEEEHHHHTC
T ss_pred             CCCCCCcEEEEEEEEHHHhcC
Confidence            9877 9999999999998864

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.88  E-value=1.4e-22  Score=137.85  Aligned_cols=94  Identities=29%  Similarity=0.430  Sum_probs=83.4

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEE---CCeEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCC
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDT   76 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~---~~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~~   76 (165)
                      ..+.|.|+|++|++|+..+ .+.+||||++.+   +.+.++|++++++.||.|||+|.|.+...   ...|.|+|||++.
T Consensus        32 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~  111 (143)
T 3f04_A           32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR  111 (143)
T ss_dssp             TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCC
Confidence            5678999999999999988 788999999999   45688999999999999999999998643   2569999999999


Q ss_pred             CCCCCeeEEEEEechhhhhhh
Q 031128           77 FSLDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        77 ~~~d~~iG~~~i~l~~l~~~~   97 (165)
                      +++|++||++.++|.++..+.
T Consensus       112 ~~~~~~iG~~~i~l~~l~~~~  132 (143)
T 3f04_A          112 FSKHDIIGEFKVPMNTVDFGH  132 (143)
T ss_dssp             SSCCEEEEEEEEEGGGCCTTS
T ss_pred             CCCCceEEEEEEEHHHccCCC
Confidence            999999999999999886643

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.88  E-value=3.7e-22  Score=136.67  Aligned_cols=96  Identities=28%  Similarity=0.398  Sum_probs=84.3

Q ss_pred             ccEEEEEEEEEeeCCCCCC--CCCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEeCCC---CcEEEEEEe
Q 031128            4 LMGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYD   73 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~--~~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~~~~---~~l~i~v~d   73 (165)
                      ..+.|.|+|++|++|+..+  .+.+||||++.+.     ..+++|++++++.||.|||+|.|.+....   ..|.|+|||
T Consensus        21 ~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d  100 (148)
T 3fdw_A           21 QTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWH  100 (148)
T ss_dssp             TTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEE
Confidence            4678999999999999876  6789999999987     34889999999999999999999987643   349999999


Q ss_pred             CCCCCCCCeeEEEEEechhhhhhhcc
Q 031128           74 KDTFSLDDKMGDAEFYITPFLEALKM   99 (165)
Q Consensus        74 ~~~~~~d~~iG~~~i~l~~l~~~~~~   99 (165)
                      ++.++++++||++.++|.++..+...
T Consensus       101 ~d~~~~~~~iG~~~i~l~~l~~~~~~  126 (148)
T 3fdw_A          101 HGRFGRNTFLGEAEIQMDSWKLDKKL  126 (148)
T ss_dssp             ECGGGCEEEEEEEEEEHHHHHHHCCS
T ss_pred             CCCCcCCcEEEEEEEEcccccccCCc
Confidence            99999999999999999999876543

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.88  E-value=3e-21  Score=155.60  Aligned_cols=122  Identities=31%  Similarity=0.467  Sum_probs=106.0

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCC-CcEEEEEEeCCCCCCCC
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSN-LPIKLTVYDKDTFSLDD   81 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~-~~l~i~v~d~~~~~~d~   81 (165)
                      ..|.|.|+|++|++|+..+ .+.+||||++.+++..++|++++++.||.|||+|.|.+.... ..|.|+|||++.+++|+
T Consensus       385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d  464 (510)
T 3jzy_A          385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDD  464 (510)
T ss_dssp             -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCC
T ss_pred             CCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCCC
Confidence            5689999999999999988 889999999999999999999999999999999999997655 45999999999999999


Q ss_pred             eeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccceeeeEEEEEEEEe
Q 031128           82 KMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWID  158 (165)
Q Consensus        82 ~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~~  158 (165)
                      +||++.+++.++..+...                               .+.  .+.|+.+.+..+|+|++.++..-
T Consensus       465 ~lG~~~~~l~~l~~~~~~-------------------------------~~~--~~~~~~l~~~~~G~i~l~~~l~l  508 (510)
T 3jzy_A          465 FLGRTEIPVAKIRTEQES-------------------------------KGP--MTRRLLLHEVPTGEVWVRFDLQL  508 (510)
T ss_dssp             EEEEEEEEHHHHHHHHHH-------------------------------HCS--CCEEEECBSSSSCEEEEEEEEEE
T ss_pred             ceEEEEEEHHHhccccCC-------------------------------CCc--eeeeecCCCCCCceEEEEEEEEE
Confidence            999999999999875431                               010  16789999989999999987653

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.87  E-value=4.1e-22  Score=133.25  Aligned_cols=92  Identities=24%  Similarity=0.401  Sum_probs=76.6

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEE-----CCeEEecccccCCCCCeEecEEEEEEeC----CCCcEEEEEEe
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLTLSISD----SNLPIKLTVYD   73 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~-----~~~~~~T~~~~~~~~P~w~e~f~f~~~~----~~~~l~i~v~d   73 (165)
                      ..+.|.|+|++|++|+..+ .+.+||||++.+     +...++|++++++.||.|||+|.|.+..    ....|.|+|||
T Consensus        16 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d   95 (129)
T 2bwq_A           16 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWD   95 (129)
T ss_dssp             TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEE
Confidence            4678999999999999988 788999999998     4578999999999999999999999532    13469999999


Q ss_pred             CCCCCC--CCeeEEEEEechhhhh
Q 031128           74 KDTFSL--DDKMGDAEFYITPFLE   95 (165)
Q Consensus        74 ~~~~~~--d~~iG~~~i~l~~l~~   95 (165)
                      ++.+++  +++||++.++|.++..
T Consensus        96 ~d~~~~~~~~~lG~~~i~l~~l~~  119 (129)
T 2bwq_A           96 QARVREEESEFLGEILIELETALL  119 (129)
T ss_dssp             C-------CEEEEEEEEEGGGCCC
T ss_pred             CCcCcCcCCceeEEEEEEccccCC
Confidence            999876  9999999999998754

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.87  E-value=1.2e-22  Score=138.09  Aligned_cols=93  Identities=32%  Similarity=0.506  Sum_probs=81.1

Q ss_pred             cEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCe--------------EEecccccCCCCCeEecEEEEE-EeC---CCC
Q 031128            5 MGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQ--------------KLKTRVVKNNVNPEWNEDLTLS-ISD---SNL   65 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~--------------~~~T~~~~~~~~P~w~e~f~f~-~~~---~~~   65 (165)
                      .|.|.|+|++|++|+..+ .+.+||||++++...              .++|++++++.||.|||+|.|. +..   ...
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~   96 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence            468999999999999988 889999999999852              4789999999999999999997 532   245


Q ss_pred             cEEEEEEeCCCCCCCCeeEEEEEechhhhhhh
Q 031128           66 PIKLTVYDKDTFSLDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        66 ~l~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~   97 (165)
                      .|.|+|||++.++++++||++.++|.++....
T Consensus        97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~  128 (142)
T 1rh8_A           97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD  128 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGT
T ss_pred             EEEEEEEECCCCCCCceEEEEEEeccccccCC
Confidence            69999999999999999999999999886643

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.87  E-value=2.1e-22  Score=139.00  Aligned_cols=91  Identities=14%  Similarity=0.156  Sum_probs=81.7

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC------eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEe
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK------QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYD   73 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~------~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d   73 (165)
                      ..+.|.|+|++|++|+.++ .+.+||||++++..      .+++|++++++.||+|||+|.|.+...   ...|.|+|||
T Consensus        41 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d  120 (155)
T 2z0u_A           41 KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCT  120 (155)
T ss_dssp             TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEE
T ss_pred             CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEE
Confidence            4678999999999999998 88999999999964      378999999999999999999998643   3569999999


Q ss_pred             CCCCCCCCeeEEEEEechhhh
Q 031128           74 KDTFSLDDKMGDAEFYITPFL   94 (165)
Q Consensus        74 ~~~~~~d~~iG~~~i~l~~l~   94 (165)
                      ++.++++++||++.++|.++.
T Consensus       121 ~d~~~~~d~iG~~~i~l~~l~  141 (155)
T 2z0u_A          121 TDRSHLEECLGGAQISLAEVC  141 (155)
T ss_dssp             ECTTSCEEEEEEEEEECTTSC
T ss_pred             CCCCCCCcEEEEEEEEHHHcc
Confidence            999999999999999999875

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.87  E-value=7.3e-22  Score=134.19  Aligned_cols=95  Identities=26%  Similarity=0.496  Sum_probs=83.5

Q ss_pred             cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEE-EeCC---CCcEEEEEE
Q 031128            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLS-ISDS---NLPIKLTVY   72 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~-~~~~---~~~l~i~v~   72 (165)
                      ...+.|.|+|++|++|+..+ .+.+||||++++..     ..++|++++++.||.|||+|.|. +...   ...|.|+||
T Consensus        26 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~  105 (142)
T 2chd_A           26 QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVC  105 (142)
T ss_dssp             GGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEE
T ss_pred             CCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEE
Confidence            35678999999999999988 78899999999974     78899999999999999999998 5332   256999999


Q ss_pred             eCCCCCCCCeeEEEEEechhhhhhh
Q 031128           73 DKDTFSLDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        73 d~~~~~~d~~iG~~~i~l~~l~~~~   97 (165)
                      |++.+++|++||++.+++.++..+.
T Consensus       106 d~d~~~~d~~iG~~~i~l~~l~~~~  130 (142)
T 2chd_A          106 DEDKFGHNEFIGETRFSLKKLKANQ  130 (142)
T ss_dssp             EECTTSCEEEEEEEEEEGGGCCTTC
T ss_pred             ECCCCCCCcEEEEEEEEHHHcCCCC
Confidence            9999999999999999999887644

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.87  E-value=5.8e-22  Score=138.90  Aligned_cols=92  Identities=23%  Similarity=0.369  Sum_probs=81.5

Q ss_pred             cEEEEEEEEEeeCCCCCC--CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEE-eCCC
Q 031128            5 MGLLRVHVLRGVNLAVRD--VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVY-DKDT   76 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~--~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~-d~~~   76 (165)
                      .+.|.|+|++|++|+..+  .+.+||||++.+..     ..++|++++++.||+|||+|.|.+......|.|+|| |++.
T Consensus        29 ~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d~  108 (171)
T 2q3x_A           29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGR  108 (171)
T ss_dssp             TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECST
T ss_pred             CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCCC
Confidence            578999999999999987  48899999999863     378999999999999999999998665566999999 9999


Q ss_pred             CCCCCeeEEEEEechhhhhh
Q 031128           77 FSLDDKMGDAEFYITPFLEA   96 (165)
Q Consensus        77 ~~~d~~iG~~~i~l~~l~~~   96 (165)
                      +++|++||++.++|.++..+
T Consensus       109 ~~~d~~iG~~~i~l~~l~~~  128 (171)
T 2q3x_A          109 MDHKCFMGVAQILLEELDLS  128 (171)
T ss_dssp             TCSSEEEEEEEECGGGSCTT
T ss_pred             CCCCCEEEEEEEEHHHcccC
Confidence            99999999999999988643

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.87  E-value=3.5e-21  Score=144.59  Aligned_cols=94  Identities=29%  Similarity=0.415  Sum_probs=83.0

Q ss_pred             cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCC
Q 031128            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG---KQKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKD   75 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~   75 (165)
                      ...+.|.|+|++|++|+..+ .+.+||||++.++   .+.++|++++++.||.|||+|.|.+...   ...|.|+|||++
T Consensus        16 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d   95 (284)
T 2r83_A           16 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFD   95 (284)
T ss_dssp             TTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECC
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECC
Confidence            35688999999999999988 7899999999996   3578999999999999999999998643   356999999999


Q ss_pred             CCCCCCeeEEEEEechhhhhh
Q 031128           76 TFSLDDKMGDAEFYITPFLEA   96 (165)
Q Consensus        76 ~~~~d~~iG~~~i~l~~l~~~   96 (165)
                      .+++|++||++.++|.++..+
T Consensus        96 ~~~~~~~lG~~~i~l~~l~~~  116 (284)
T 2r83_A           96 RFSKHDIIGEFKVPMNTVDFG  116 (284)
T ss_dssp             SSSCCCEEEEEEEEGGGCCCS
T ss_pred             CCCCCceeEEEEEcchhcccC
Confidence            999999999999999987653

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.86  E-value=3.5e-22  Score=135.47  Aligned_cols=92  Identities=24%  Similarity=0.401  Sum_probs=80.3

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEE-----CCeEEecccccCCCCCeEecEEEEEEeCC----CCcEEEEEEe
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLTLSISDS----NLPIKLTVYD   73 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~-----~~~~~~T~~~~~~~~P~w~e~f~f~~~~~----~~~l~i~v~d   73 (165)
                      ..+.|.|+|++|++|+..+ .+.+||||++.+     ....++|++++++.||.|||+|.|.+...    ...|.|+|||
T Consensus        19 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d   98 (141)
T 1v27_A           19 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWD   98 (141)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEE
T ss_pred             CCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEE
Confidence            4578999999999999988 788999999998     35688999999999999999999995322    2569999999


Q ss_pred             CCCCCC--CCeeEEEEEechhhhh
Q 031128           74 KDTFSL--DDKMGDAEFYITPFLE   95 (165)
Q Consensus        74 ~~~~~~--d~~iG~~~i~l~~l~~   95 (165)
                      ++.+++  +++||++.++|.++..
T Consensus        99 ~d~~~~~~~~~lG~~~i~l~~l~~  122 (141)
T 1v27_A           99 QARVREEESEFLGEILIELETALL  122 (141)
T ss_dssp             BCSSSSCCBCCCEEEEEEGGGCCC
T ss_pred             CCCCcCCCCceEEEEEEEccccCC
Confidence            999986  9999999999988754

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.86  E-value=2.2e-21  Score=131.22  Aligned_cols=93  Identities=27%  Similarity=0.458  Sum_probs=81.8

Q ss_pred             ccEEEEEEEEEeeCCCCCC-C-CCCCcEEEEEEC---CeEEecccccCCCCCeEecEEEEE-EeCC---CCcEEEEEEeC
Q 031128            4 LMGLLRVHVLRGVNLAVRD-V-VSSDPYVVIKMG---KQKLKTRVVKNNVNPEWNEDLTLS-ISDS---NLPIKLTVYDK   74 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~-~~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~-~~~~---~~~l~i~v~d~   74 (165)
                      ..+.|.|+|++|++|+..+ . +.+||||++.+.   .+.++|++++++.||.|||+|.|. +...   ...|.|+|||+
T Consensus        20 ~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~   99 (138)
T 1ugk_A           20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSF   99 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEEC
Confidence            5678999999999999988 4 789999999996   478999999999999999999996 6543   24699999999


Q ss_pred             CCCCCCCeeEEEEEechhhhhh
Q 031128           75 DTFSLDDKMGDAEFYITPFLEA   96 (165)
Q Consensus        75 ~~~~~d~~iG~~~i~l~~l~~~   96 (165)
                      +.+++|++||++.++|.++..+
T Consensus       100 d~~~~~~~lG~~~i~l~~l~~~  121 (138)
T 1ugk_A          100 DRFSRDDIIGEVLIPLSGIELS  121 (138)
T ss_dssp             CSSCCCCCCEEEEEECTTCCCT
T ss_pred             CCCCCCcEEEEEEEehhHccCC
Confidence            9999999999999999988664

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.86  E-value=1.4e-21  Score=136.27  Aligned_cols=92  Identities=33%  Similarity=0.441  Sum_probs=82.5

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeC
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDK   74 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~   74 (165)
                      ..+.|.|+|++|++|+..+ .+.+||||++++..     ..++|++++++.||.|||+|.|.+...   ...|.|+|||+
T Consensus        35 ~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  114 (166)
T 2cm5_A           35 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDY  114 (166)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEEC
Confidence            4678999999999999988 78899999999975     688999999999999999999998653   34699999999


Q ss_pred             CCCCCCCeeEEEEEechhhhh
Q 031128           75 DTFSLDDKMGDAEFYITPFLE   95 (165)
Q Consensus        75 ~~~~~d~~iG~~~i~l~~l~~   95 (165)
                      +.++++++||++.+++.++..
T Consensus       115 d~~~~~~~iG~~~i~l~~~~~  135 (166)
T 2cm5_A          115 DIGKSNDYIGGCQLGISAKGE  135 (166)
T ss_dssp             CSSSCCEEEEEEEEETTCCHH
T ss_pred             CCCCCCcEEEeEEEecccCCc
Confidence            999999999999999998654

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.86  E-value=2.4e-21  Score=131.18  Aligned_cols=89  Identities=21%  Similarity=0.266  Sum_probs=76.9

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---C-eEEecccccCCCCCeEecEEEEEEeCCC---CcEEEEEEeCC
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG---K-QKLKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYDKD   75 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~---~-~~~~T~~~~~~~~P~w~e~f~f~~~~~~---~~l~i~v~d~~   75 (165)
                      ..+.|.|+|++|++   .+ .+.+||||++.+.   + ..++|++++++.||.|||+|.|.+...+   ..|.|+|||++
T Consensus        24 ~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d  100 (138)
T 1wfm_A           24 QKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCD  100 (138)
T ss_dssp             TTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECC
T ss_pred             CCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECC
Confidence            46789999999993   45 7789999999983   2 3679999999999999999999986542   45999999999


Q ss_pred             CCCCCCeeEEEEEechhhhh
Q 031128           76 TFSLDDKMGDAEFYITPFLE   95 (165)
Q Consensus        76 ~~~~d~~iG~~~i~l~~l~~   95 (165)
                      .+++|++||++.++|.++..
T Consensus       101 ~~~~dd~lG~~~i~l~~l~~  120 (138)
T 1wfm_A          101 RFSRHSVAGELRLGLDGTSV  120 (138)
T ss_dssp             SSCTTSCSEEEEEESSSSSS
T ss_pred             CCCCCcEEEEEEEEcccccC
Confidence            99999999999999998753

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.86  E-value=1.3e-21  Score=132.11  Aligned_cols=95  Identities=29%  Similarity=0.370  Sum_probs=83.2

Q ss_pred             cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCCC---CcEEEEEEe
Q 031128            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYD   73 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~~---~~l~i~v~d   73 (165)
                      ...+.|.|+|++|++|+..+ .+.+||||++++..     .+++|++++++.||.|||+|.|.+....   ..|.|+|||
T Consensus        13 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d   92 (138)
T 3n5a_A           13 PSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMD   92 (138)
T ss_dssp             TTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEE
T ss_pred             CCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEE
Confidence            35688999999999999988 77899999999873     4789999999999999999999986544   459999999


Q ss_pred             CCCCCCCCeeEEEEEechhhhhhh
Q 031128           74 KDTFSLDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        74 ~~~~~~d~~iG~~~i~l~~l~~~~   97 (165)
                      ++.+++|++||++.+++.++..+.
T Consensus        93 ~~~~~~~~~lG~~~i~l~~~~~~~  116 (138)
T 3n5a_A           93 KDKLSRNDVIGKIYLSWKSGPGEV  116 (138)
T ss_dssp             CCSSSCCEEEEEEEESSSSCHHHH
T ss_pred             CCCCCCCcEEEEEEEccccCChHH
Confidence            999999999999999999765543

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.85  E-value=6.2e-21  Score=131.99  Aligned_cols=92  Identities=30%  Similarity=0.392  Sum_probs=81.1

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCCC---CcEEEEEEeC
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYDK   74 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~~---~~l~i~v~d~   74 (165)
                      ..+.|.|+|++|++|+..+ .+.+||||++++..     ..++|++++++.||.|||+|.|.+....   ..|.|+|||+
T Consensus        23 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~  102 (159)
T 1tjx_A           23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY  102 (159)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEEC
Confidence            5678999999999999988 78899999999862     4789999999999999999999986542   4599999999


Q ss_pred             CCCCCCCeeEEEEEechhhhh
Q 031128           75 DTFSLDDKMGDAEFYITPFLE   95 (165)
Q Consensus        75 ~~~~~d~~iG~~~i~l~~l~~   95 (165)
                      +.+++|++||++.+++..+..
T Consensus       103 d~~~~~~~iG~~~i~l~~~~~  123 (159)
T 1tjx_A          103 DKIGKNDAIGKVFVGYNSTGA  123 (159)
T ss_dssp             CSSSCCEEEEEEEEETTCCHH
T ss_pred             CCCCCCceEEEEEECCCCCCc
Confidence            999999999999999987543

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.85  E-value=3.7e-21  Score=130.71  Aligned_cols=93  Identities=24%  Similarity=0.228  Sum_probs=79.5

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeC
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDK   74 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~   74 (165)
                      ..+.|.|+|++|++|+..+ .+ +||||++++.     ...++|++++++.||.|||+|.|.+...   ...|.|+|||+
T Consensus        22 ~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  100 (142)
T 2dmg_A           22 QRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNS  100 (142)
T ss_dssp             TTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEEC
Confidence            4678999999999999988 77 9999999984     2678999999999999999999998542   24699999999


Q ss_pred             CCCCC--CCeeEEEEEechhhhhhh
Q 031128           75 DTFSL--DDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        75 ~~~~~--d~~iG~~~i~l~~l~~~~   97 (165)
                      +.+++  +++||++.++|.++....
T Consensus       101 d~~~~~~~~~iG~~~i~l~~~~~~~  125 (142)
T 2dmg_A          101 GGFLSKDKGLLGKVLVALASEELAK  125 (142)
T ss_dssp             CCSSCCSCCCCEEEEEECCCSTTTT
T ss_pred             CCccccCCcEEEEEEEecccccccc
Confidence            98764  579999999998876543

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.85  E-value=2.3e-21  Score=132.47  Aligned_cols=95  Identities=26%  Similarity=0.283  Sum_probs=81.2

Q ss_pred             cccEEEEEEEEEeeCCCCC-C-------CCCCCcEEEEEEC---CeEEecccccCCCCCeEecEEEEEEeCC---CCcEE
Q 031128            3 NLMGLLRVHVLRGVNLAVR-D-------VVSSDPYVVIKMG---KQKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIK   68 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~-~-------~~~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~   68 (165)
                      ...+.|.|+|++|++|+.. +       .+.+||||++.+.   .+.++|++++++.||.|||+|.|.+...   ...|.
T Consensus        23 ~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~  102 (147)
T 2enp_A           23 LLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLL  102 (147)
T ss_dssp             TTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEE
T ss_pred             CCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEE
Confidence            3567899999999999984 3       3579999999986   4678999999999999999999998642   24699


Q ss_pred             EEEEeCCCCCCCCeeEEEEEechhhhhhh
Q 031128           69 LTVYDKDTFSLDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        69 i~v~d~~~~~~d~~iG~~~i~l~~l~~~~   97 (165)
                      |+|||++.++++++||++.++|.++....
T Consensus       103 ~~V~d~d~~~~~~~iG~~~i~l~~l~~~~  131 (147)
T 2enp_A          103 LTVVDFDKFSRHCVIGKVSVPLCEVDLVK  131 (147)
T ss_dssp             EEEECCSTTCCSCCCEEEEEETTTSCTTT
T ss_pred             EEEEECCCCcCCcEEEEEEEechhcCCCC
Confidence            99999999999999999999999886543

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.85  E-value=2.7e-20  Score=150.40  Aligned_cols=87  Identities=28%  Similarity=0.397  Sum_probs=80.3

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeC--CCCcEEEEEEeCCCCCCC
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISD--SNLPIKLTVYDKDTFSLD   80 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~--~~~~l~i~v~d~~~~~~d   80 (165)
                      ..|.|.|+|++|++|+. + .+.+||||++.++++.++|++++++.||+|||+|.|.+..  ....|.|+|||+|..++|
T Consensus       392 ~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~d  470 (540)
T 3nsj_A          392 GLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDD  470 (540)
T ss_dssp             TEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCC
T ss_pred             cccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCC
Confidence            47899999999999998 7 8899999999999999999999999999999999998643  456799999999999899


Q ss_pred             CeeEEEEEech
Q 031128           81 DKMGDAEFYIT   91 (165)
Q Consensus        81 ~~iG~~~i~l~   91 (165)
                      ++||++.++|.
T Consensus       471 D~LG~~~~~L~  481 (540)
T 3nsj_A          471 DLLGSCDRSPH  481 (540)
T ss_dssp             EEEEEEEECCC
T ss_pred             CEEEEEEEEee
Confidence            99999999996

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.83  E-value=2.7e-19  Score=119.81  Aligned_cols=120  Identities=13%  Similarity=0.233  Sum_probs=97.5

Q ss_pred             cEEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEeccccc-CCCCCeEecEEEEEEeCC---CCcEEEEEEeCCCCCCC
Q 031128            5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVK-NNVNPEWNEDLTLSISDS---NLPIKLTVYDKDTFSLD   80 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~-~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~~~~~d   80 (165)
                      .--|+|+|.+|.+|+    +.+|||+++.+.+.+++|++++ ++.||.|||.|.|++..+   ++.|.+.|+|++.++++
T Consensus        20 ~msL~V~l~~a~~Lp----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~n   95 (144)
T 3l9b_A           20 HMALIVHLKTVSELR----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSN   95 (144)
T ss_dssp             CEEEEEEEEEEESCC----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCC
T ss_pred             cEEEEEEEEEecCCC----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCC
Confidence            346899999999998    4689999999999999999998 589999999999999753   34599999999999999


Q ss_pred             CeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccc-eeeeEEEEEEEEeC
Q 031128           81 DKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNV-EVGEVKIQLEWIDI  159 (165)
Q Consensus        81 ~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~-~~G~l~l~l~~~~~  159 (165)
                      ++||++.++|.++.......+                                  .+.-++.+.. ..+.|.+.+.|.|.
T Consensus        96 rlIG~~~i~Lq~lv~~~~l~l----------------------------------~~~LvD~n~~~~~a~I~l~l~Y~pp  141 (144)
T 3l9b_A           96 KLIGTFRMVLQKVVEENRVEV----------------------------------SDTLIDDNNAIIKTSLSMEVRYQAA  141 (144)
T ss_dssp             EEEEEEEEESHHHHHHSEEEE----------------------------------EEEEECTTSCEEEEEEEEEEEEEET
T ss_pred             CEEEEEEEEhHHhccCCeEEE----------------------------------eecccCCCCCccccEEEEEEEecCC
Confidence            999999999999998664310                                  0111122222 25899999999998


Q ss_pred             CCC
Q 031128          160 PGS  162 (165)
Q Consensus       160 ~~~  162 (165)
                      +++
T Consensus       142 ~g~  144 (144)
T 3l9b_A          142 DGT  144 (144)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            864

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.83  E-value=4e-20  Score=127.07  Aligned_cols=89  Identities=29%  Similarity=0.346  Sum_probs=75.3

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC--Ce---EEecccccCCCCCeEecEEEEEEeCCC---CcEEEEEEeC
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG--KQ---KLKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYDK   74 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~--~~---~~~T~~~~~~~~P~w~e~f~f~~~~~~---~~l~i~v~d~   74 (165)
                      ..+.|.|+|++|++|+..+ .+.+||||++.+.  +.   +++|++++++.||.|||+|.|.+....   ..|.|+|||+
T Consensus        28 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~  107 (153)
T 1w15_A           28 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDS  107 (153)
T ss_dssp             TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeC
Confidence            4678999999999999988 7889999999983  33   679999999999999999999987643   3599999999


Q ss_pred             CCCCCCCeeEEEEEechh
Q 031128           75 DTFSLDDKMGDAEFYITP   92 (165)
Q Consensus        75 ~~~~~d~~iG~~~i~l~~   92 (165)
                      +.++++++||++.+++.+
T Consensus       108 d~~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A          108 ERGSRNEVIGRLVLGATA  125 (153)
T ss_dssp             CTTSCCEEEEEEEESTTC
T ss_pred             CCCCCCcEEEEEEECCCC
Confidence            999999999999999987

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.83  E-value=8e-20  Score=138.20  Aligned_cols=91  Identities=31%  Similarity=0.492  Sum_probs=79.8

Q ss_pred             cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEE---CCeEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCC
Q 031128            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKD   75 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~---~~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~   75 (165)
                      ...+.|.|+|++|++|+..+ .+.+||||++++   +.+.++|++++++.||.|||+|.|.+...   ...|.|+|||++
T Consensus        17 ~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d   96 (296)
T 1dqv_A           17 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD   96 (296)
T ss_dssp             SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred             CCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcC
Confidence            45789999999999999988 888999999999   46788999999999999999999998643   246999999999


Q ss_pred             CCCCCCeeEEEEEe-chhh
Q 031128           76 TFSLDDKMGDAEFY-ITPF   93 (165)
Q Consensus        76 ~~~~d~~iG~~~i~-l~~l   93 (165)
                      .+++|++||++.++ +.++
T Consensus        97 ~~~~~~~iG~~~i~~l~~~  115 (296)
T 1dqv_A           97 RFSRHDLIGQVVLDNLLEL  115 (296)
T ss_dssp             SSSCCCEEEEEECCCTTGG
T ss_pred             CCCCCceEEEEEecccccc
Confidence            99999999999996 4443

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.82  E-value=8.1e-20  Score=122.68  Aligned_cols=87  Identities=22%  Similarity=0.381  Sum_probs=73.6

Q ss_pred             ccEEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEeccccc-CCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCe
Q 031128            4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVK-NNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDK   82 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~-~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~   82 (165)
                      +++.|.|+|++|++++.  .+.+||||+++ . +..+|++++ ++.||.|||+|.|.+......|.|+|||++ +++|++
T Consensus         3 ~~~~L~V~V~~A~~l~~--~g~~DPYv~v~-~-~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~   77 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGA--QEKFNTYVTLK-V-QNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTM   77 (131)
T ss_dssp             CCEEEEEEEEEEECSSC--GGGCEEEEEEE-E-TTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEEE
T ss_pred             cceEEEEEEEEeECCCC--CCCcCeEEEEE-e-cCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCCe
Confidence            56899999999998853  56789999999 3 334555554 689999999999999876677999999999 889999


Q ss_pred             eEEEEEechhhhh
Q 031128           83 MGDAEFYITPFLE   95 (165)
Q Consensus        83 iG~~~i~l~~l~~   95 (165)
                      ||++.++|.++..
T Consensus        78 iG~~~i~l~~l~~   90 (131)
T 2cjt_A           78 VGTVWIPLRTIRQ   90 (131)
T ss_dssp             EEEEEEEGGGSCB
T ss_pred             EEEEEEEHHHhhh
Confidence            9999999998765

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.79  E-value=2.4e-19  Score=125.07  Aligned_cols=88  Identities=19%  Similarity=0.373  Sum_probs=74.8

Q ss_pred             cccEEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEeccccc-CCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCC
Q 031128            3 NLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVK-NNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDD   81 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~-~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~   81 (165)
                      .+++.|.|+|++|++++  ..+.+||||+++  .+..+|++++ ++.||.|||+|.|.+......|.|+|||++ +++|+
T Consensus        11 g~~~~L~V~V~~A~~l~--~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd   85 (167)
T 2cjs_A           11 GILSLLCVGVKKAKFDG--AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDT   85 (167)
T ss_dssp             SCCCEEEEEEEEEECSS--CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCCE
T ss_pred             CceEEEEEEEEEEECCC--CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCCc
Confidence            35789999999999884  256889999999  3345666665 589999999999999876677999999999 88999


Q ss_pred             eeEEEEEechhhhh
Q 031128           82 KMGDAEFYITPFLE   95 (165)
Q Consensus        82 ~iG~~~i~l~~l~~   95 (165)
                      +||++.++|.++..
T Consensus        86 ~iG~~~i~L~~l~~   99 (167)
T 2cjs_A           86 MVGTVWIPLRTIRQ   99 (167)
T ss_dssp             EEEEEEEEGGGSCB
T ss_pred             eEEEEEEEHHHhcc
Confidence            99999999998765

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.77  E-value=8.4e-18  Score=138.29  Aligned_cols=92  Identities=23%  Similarity=0.400  Sum_probs=82.2

Q ss_pred             ccEEEEEEEEEeeCCCCCC---CCCCCcEEEEEECC-----eEEecccccCC-CCCeEecEEEEEEeCCC-CcEEEEEEe
Q 031128            4 LMGLLRVHVLRGVNLAVRD---VVSSDPYVVIKMGK-----QKLKTRVVKNN-VNPEWNEDLTLSISDSN-LPIKLTVYD   73 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~---~~~~dpyv~v~~~~-----~~~~T~~~~~~-~~P~w~e~f~f~~~~~~-~~l~i~v~d   73 (165)
                      ..+.|.|+|++|++|+..+   .+.+||||+|.+.+     .+++|++++++ .||+|||+|.|.+..+. ..|.|+|||
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D  574 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED  574 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence            4689999999999999877   57899999999843     68899999997 99999999999998665 459999999


Q ss_pred             CCCCCCCCeeEEEEEechhhhh
Q 031128           74 KDTFSLDDKMGDAEFYITPFLE   95 (165)
Q Consensus        74 ~~~~~~d~~iG~~~i~l~~l~~   95 (165)
                      ++.++++++||++.++|..+..
T Consensus       575 ~D~~~~dd~iG~~~ipl~~L~~  596 (624)
T 1djx_A          575 YDSSSKNDFIGQSTIPWNSLKQ  596 (624)
T ss_dssp             CCSSSCCEEEEEEEEEGGGBCC
T ss_pred             cCCCCCCceeEEEEEEHHHcCC
Confidence            9999999999999999988765

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.76  E-value=3.7e-18  Score=128.06  Aligned_cols=92  Identities=30%  Similarity=0.383  Sum_probs=80.6

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC--C---eEEecccccCCCCCeEecEEEEEEeCCC---CcEEEEEEeC
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG--K---QKLKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYDK   74 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~--~---~~~~T~~~~~~~~P~w~e~f~f~~~~~~---~~l~i~v~d~   74 (165)
                      ..+.|.|+|++|++|+..+ .+.+||||++.+.  +   .+++|++++++.||.|||.|.|.+....   ..|.|+|||+
T Consensus       148 ~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~  227 (284)
T 2r83_A          148 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY  227 (284)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEEC
T ss_pred             cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeC
Confidence            3578999999999999988 7889999999984  2   4679999999999999999999987553   3499999999


Q ss_pred             CCCCCCCeeEEEEEechhhhh
Q 031128           75 DTFSLDDKMGDAEFYITPFLE   95 (165)
Q Consensus        75 ~~~~~d~~iG~~~i~l~~l~~   95 (165)
                      +.++++++||++.+++..+..
T Consensus       228 d~~~~~~~iG~~~i~l~~~~~  248 (284)
T 2r83_A          228 DKIGKNDAIGKVFVGYNSTGA  248 (284)
T ss_dssp             CSSSCCCEEEEEEEETTCCHH
T ss_pred             CCCCCCcEEEEEEECCCCCCc
Confidence            999999999999999987554

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.76  E-value=2.6e-18  Score=142.97  Aligned_cols=94  Identities=24%  Similarity=0.470  Sum_probs=84.1

Q ss_pred             cccEEEEEEEEEeeCCCC---CC-CCCCCcEEEEEEC---CeEEecccccCCCCCeEecEEEEEEeCC-CCcEEEEEEeC
Q 031128            3 NLMGLLRVHVLRGVNLAV---RD-VVSSDPYVVIKMG---KQKLKTRVVKNNVNPEWNEDLTLSISDS-NLPIKLTVYDK   74 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~---~~-~~~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~~~~~-~~~l~i~v~d~   74 (165)
                      .+.+.|.|+|++|++|+.   .+ .+.+||||++.+.   ..+++|++++++.||+|||+|.|.+... ...|.|+|||+
T Consensus        15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~   94 (749)
T 1cjy_A           15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA   94 (749)
T ss_dssp             CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEEC
T ss_pred             CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEEC
Confidence            367899999999999998   66 7889999999998   4688999999999999999999999864 35699999999


Q ss_pred             CCCCCCCeeEEEEEechhhhhhh
Q 031128           75 DTFSLDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        75 ~~~~~d~~iG~~~i~l~~l~~~~   97 (165)
                      +.++ |++||++.++|.++..+.
T Consensus        95 D~~~-ddfIG~v~I~L~~L~~g~  116 (749)
T 1cjy_A           95 NYVM-DETLGTATFTVSSMKVGE  116 (749)
T ss_dssp             CSSS-CEEEEEECCBSTTSCTTC
T ss_pred             CCCC-CceeEEEEEEHHHcCCCC
Confidence            9998 999999999999886544

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.72  E-value=5.4e-19  Score=141.76  Aligned_cols=90  Identities=11%  Similarity=0.189  Sum_probs=9.5

Q ss_pred             ccEEEEEEEEEeeCCCCCCCCCCCcEEEEEECCe-EEecccccCC---CCCeEecEEEEEEeCCCCcEEEEEEeC-C---
Q 031128            4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQ-KLKTRVVKNN---VNPEWNEDLTLSISDSNLPIKLTVYDK-D---   75 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~-~~~T~~~~~~---~~P~w~e~f~f~~~~~~~~l~i~v~d~-~---   75 (165)
                      ..+.|.|+|++|++|++++    ||||++.++++ ..||++++++   .||.|||+|.|.+......|.|+|||. +   
T Consensus         9 ~~~~L~V~VieAk~L~~~d----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~~   84 (483)
T 3bxj_A            9 VDNVLKLWIIEARELPPKK----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKR   84 (483)
T ss_dssp             EEECC-------------------------------------------------CCEECC--------------------
T ss_pred             eccEEEEEEEEcCCcCCCC----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCccc
Confidence            4678999999999998876    99999999875 5699999998   999999999999755556799999994 4   


Q ss_pred             CCCCCCeeEEEEEechhhhhhh
Q 031128           76 TFSLDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        76 ~~~~d~~iG~~~i~l~~l~~~~   97 (165)
                      ..++|++||.+.|++.++..+.
T Consensus        85 ~~~~d~~lG~v~i~l~~l~~~~  106 (483)
T 3bxj_A           85 KKDKAGYVGLVTVPVATLAGRH  106 (483)
T ss_dssp             ----------------------
T ss_pred             cCCCCceEEEEEEEHHHhcCCC
Confidence            3678999999999999887643

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.68  E-value=1.6e-17  Score=125.58  Aligned_cols=92  Identities=28%  Similarity=0.411  Sum_probs=81.2

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC--C---eEEecccccCCCCCeEecEEEEEEeCCC---CcEEEEEEeC
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG--K---QKLKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYDK   74 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~--~---~~~~T~~~~~~~~P~w~e~f~f~~~~~~---~~l~i~v~d~   74 (165)
                      ..|.|.|+|++|++|+..+ .+.+||||++++.  +   .+++|++++++.||.|||.|.|.+....   ..|.|+|||+
T Consensus       150 ~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  229 (296)
T 1dqv_A          150 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDY  229 (296)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEEC
T ss_pred             ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeC
Confidence            4578999999999999988 7889999999986  2   5789999999999999999999986542   3599999999


Q ss_pred             CCCCCCCeeEEEEEechhhhh
Q 031128           75 DTFSLDDKMGDAEFYITPFLE   95 (165)
Q Consensus        75 ~~~~~d~~iG~~~i~l~~l~~   95 (165)
                      +.++++++||.+.+++..+..
T Consensus       230 d~~~~~~~iG~~~i~l~~~~~  250 (296)
T 1dqv_A          230 DCIGHNEVIGVCRVGPEAADP  250 (296)
T ss_dssp             CSSSCCEEEEECCCSSCTTCH
T ss_pred             CCCCCCceEEEEEECCccCCc
Confidence            999999999999999987644

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.62  E-value=1e-15  Score=127.30  Aligned_cols=92  Identities=35%  Similarity=0.529  Sum_probs=82.3

Q ss_pred             cEEEEEEEEEeeCCCCCC-CCCCCcEEEEEE-----CCeEEecccccCCCCCeEecEEEEEEeCCC--CcEEEEEEeCCC
Q 031128            5 MGLLRVHVLRGVNLAVRD-VVSSDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLTLSISDSN--LPIKLTVYDKDT   76 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~-----~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~--~~l~i~v~d~~~   76 (165)
                      .+.|.|++++|++|.+++ .+.+||||++.+     ...+++|++++++.||.|||.|.|.+...+  ..|.++|||++.
T Consensus       171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~  250 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  250 (674)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred             cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence            467899999999999998 889999999998     346789999999999999999999986543  449999999999


Q ss_pred             CCCCCeeEEEEEechhhhhh
Q 031128           77 FSLDDKMGDAEFYITPFLEA   96 (165)
Q Consensus        77 ~~~d~~iG~~~i~l~~l~~~   96 (165)
                      +++|++||.+.+++.++...
T Consensus       251 ~~~dd~iG~~~i~l~~l~~~  270 (674)
T 3pfq_A          251 TSRNDFMGSLSFGISELQKA  270 (674)
T ss_dssp             SSCCEECCBCCCBTTHHHHC
T ss_pred             ccccccccccccchhhhccC
Confidence            99999999999999998764

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.56  E-value=5.6e-14  Score=118.09  Aligned_cols=86  Identities=16%  Similarity=0.394  Sum_probs=72.7

Q ss_pred             cEEEEEEEEEeeCCCCCCCCCCCcEEEEEECC-------eEEecccccC-CCCCeEecE-EEEE-EeCCCC-cEEEEEEe
Q 031128            5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK-------QKLKTRVVKN-NVNPEWNED-LTLS-ISDSNL-PIKLTVYD   73 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~-------~~~~T~~~~~-~~~P~w~e~-f~f~-~~~~~~-~l~i~v~d   73 (165)
                      .+.|.|+|++|++|+..   ..||||+|.+.+       .+++|+++++ +.||+|||+ |.|. +..++. .|.|+|||
T Consensus       649 ~~~L~V~Visaq~L~~~---~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D  725 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK---QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSE  725 (816)
T ss_dssp             CEEEEEEEEEEECCCSS---CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred             ceEEEEEEEEcccCCCC---CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEe
Confidence            47899999999999864   589999999864       5789999986 599999998 9998 765553 48999999


Q ss_pred             CCCCCCCCeeEEEEEechhhhhhh
Q 031128           74 KDTFSLDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        74 ~~~~~~d~~iG~~~i~l~~l~~~~   97 (165)
                      ++    +++||++.++|+.+..+.
T Consensus       726 ~d----ddfiG~~~ipL~~L~~Gy  745 (816)
T 3qr0_A          726 EN----GKFIGHRVMPLDGIKPGY  745 (816)
T ss_dssp             TT----SCEEEEEEEESTTCCCEE
T ss_pred             cC----CCeeeEEEEEHHHcCCcc
Confidence            84    799999999998877643

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.54  E-value=4.5e-14  Score=119.32  Aligned_cols=86  Identities=22%  Similarity=0.421  Sum_probs=71.4

Q ss_pred             cEEEEEEEEEeeCCCCCCCCCCCcEEEEEECC------eEEecccccCC-CCCeEec-EEEEE-EeCCC-CcEEEEEEeC
Q 031128            5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK------QKLKTRVVKNN-VNPEWNE-DLTLS-ISDSN-LPIKLTVYDK   74 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~------~~~~T~~~~~~-~~P~w~e-~f~f~-~~~~~-~~l~i~v~d~   74 (165)
                      ...|.|+|++|++|+..   .+||||+|.+.+      .+++|++++++ .||+||| .|.|. +..++ ..|.|+|||+
T Consensus       724 ~~~L~V~Visaq~L~~~---~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~  800 (885)
T 3ohm_B          724 ANALRVKVISGQFLSDR---KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEE  800 (885)
T ss_dssp             CEEEEEEEEEEESCCSS---CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEET
T ss_pred             ceEEEEEEEEeccCccc---CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcC
Confidence            35899999999999864   589999999863      35799999864 9999999 69998 65554 3499999998


Q ss_pred             CCCCCCCeeEEEEEechhhhhhh
Q 031128           75 DTFSLDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        75 ~~~~~d~~iG~~~i~l~~l~~~~   97 (165)
                      +    +++||++.++|..+..+.
T Consensus       801 d----ddfiG~~~lpL~~L~~Gy  819 (885)
T 3ohm_B          801 G----GKFVGHRILPVSAIRSGY  819 (885)
T ss_dssp             T----TEEEEEEEEETTTCCCEE
T ss_pred             C----ccEEeeEEEEHHHcCCCc
Confidence            6    789999999998876643

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.50  E-value=1.5e-13  Score=115.69  Aligned_cols=86  Identities=20%  Similarity=0.385  Sum_probs=71.3

Q ss_pred             ccEEEEEEEEEeeCCCCCCCCCCCcEEEEEECC------eEEecc-cccC-CCCCeEec-EEEE-EEeCCCC-cEEEEEE
Q 031128            4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGK------QKLKTR-VVKN-NVNPEWNE-DLTL-SISDSNL-PIKLTVY   72 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~------~~~~T~-~~~~-~~~P~w~e-~f~f-~~~~~~~-~l~i~v~   72 (165)
                      ..+.|.|+|++|++|+.   +.+||||+|.+.+      ++++|+ ++++ +.||+||| .|.| .+..++. .|.|+||
T Consensus       676 ~~~~L~V~Visa~~L~~---~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~  752 (799)
T 2zkm_X          676 VATTLSITVISGQFLSE---RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVM  752 (799)
T ss_dssp             TCEEEEEEEEEEESCCS---SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEE
T ss_pred             eeeeEEEEEEeccccCc---cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEE
Confidence            36799999999999985   3589999999842      367999 8875 59999999 6999 7865553 4899999


Q ss_pred             eCCCCCCCCeeEEEEEechhhhhh
Q 031128           73 DKDTFSLDDKMGDAEFYITPFLEA   96 (165)
Q Consensus        73 d~~~~~~d~~iG~~~i~l~~l~~~   96 (165)
                      |++    +++||++.++|+.+..+
T Consensus       753 D~d----~d~iG~~~ipl~~L~~G  772 (799)
T 2zkm_X          753 EEG----NKFLGHRIIPINALNSG  772 (799)
T ss_dssp             ETT----TEEEEEEEEEGGGBCCE
T ss_pred             EeC----CCccceEeeehhhcCCC
Confidence            986    78999999999887653

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=99.49  E-value=1.2e-12  Score=85.36  Aligned_cols=115  Identities=17%  Similarity=0.297  Sum_probs=85.8

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeE----Eec-ccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCC
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQK----LKT-RVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTF   77 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~----~~T-~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~   77 (165)
                      ....|+|.+.++.--+... ....||||.+.+....    .+| ...++|..|.||++|.-.+.+ +..|.|.|++... 
T Consensus         4 m~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~-   81 (126)
T 1yrk_A            4 MAPFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAAE-   81 (126)
T ss_dssp             CCCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-TCEEEEEEEEETT-
T ss_pred             cCccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-CEEEEEEEEcCCC-
Confidence            4456888887665322111 2358999999988433    244 666778999999999999864 6679999997654 


Q ss_pred             CCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccceeeeEEEEEEEE
Q 031128           78 SLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWI  157 (165)
Q Consensus        78 ~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~  157 (165)
                         +|++.+++++.++....+.                              .+|  ..+.|++|+  ++|+|++.++|.
T Consensus        82 ---~fvAn~tV~~edL~~~c~~------------------------------~~g--~~e~WvdLe--P~Gkl~~~i~~~  124 (126)
T 1yrk_A           82 ---EPVSEVTVGVSVLAERCKK------------------------------NNG--KAEFWLDLQ--PQAKVLMSVQYF  124 (126)
T ss_dssp             ---EEEEEEEEEHHHHHHHHHT------------------------------TTT--EEEEEEECB--SSCEEEEEEEEE
T ss_pred             ---CeeeEEEEEHHHHHhhhcc------------------------------CCC--ceEEEEecc--cCcEEEEEEEEe
Confidence               8999999999999975322                              012  239999998  899999999986

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=99.45  E-value=1.5e-12  Score=85.98  Aligned_cols=116  Identities=15%  Similarity=0.286  Sum_probs=86.8

Q ss_pred             ccEEEEEEEEEeeCCCCC--CCCCCCcEEEEEECCe-E---Eec-ccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCC
Q 031128            4 LMGLLRVHVLRGVNLAVR--DVVSSDPYVVIKMGKQ-K---LKT-RVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDT   76 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~--~~~~~dpyv~v~~~~~-~---~~T-~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~   76 (165)
                      ..+.|+|.+.++.--+..  .....||||.|.+... .   .+| ...++|..|.||+.|.-.+.+ +..|.|.|++...
T Consensus         8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~   86 (138)
T 2enj_A            8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-GRVMQIIVKGKNV   86 (138)
T ss_dssp             CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-SCEEEEEEECSSC
T ss_pred             cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-CeEEEEEEEcCCC
Confidence            455688888776643322  2346899999998843 2   455 556678999999999988864 6679999997553


Q ss_pred             CCCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccceeeeEEEEEEE
Q 031128           77 FSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEW  156 (165)
Q Consensus        77 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~  156 (165)
                          +|++.++|++.++....+.                              .+|+  .+.|++|+  ++|+|++.++|
T Consensus        87 ----~fVAn~tV~~edL~~~ck~------------------------------~~g~--~e~WvdLe--P~Gkl~v~i~~  128 (138)
T 2enj_A           87 ----DLISETTVELYSLAERCRK------------------------------NNGK--TEIWLELK--PQGRMLMNARY  128 (138)
T ss_dssp             ----SCCEEEEEESHHHHHHHHH------------------------------TTTC--EEEEEECB--SSCEEEEEEEE
T ss_pred             ----CeeeEEEEEHHHHHhhhcc------------------------------CCCc--eEEEEecc--cCcEEEEEEEE
Confidence                8999999999999975321                              0122  29999998  89999999998


Q ss_pred             Ee
Q 031128          157 ID  158 (165)
Q Consensus       157 ~~  158 (165)
                      .-
T Consensus       129 ~~  130 (138)
T 2enj_A          129 FL  130 (138)
T ss_dssp             CC
T ss_pred             EE
Confidence            53

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=96.19  E-value=0.16  Score=36.25  Aligned_cols=109  Identities=11%  Similarity=0.118  Sum_probs=66.1

Q ss_pred             cccEEEEEEEEEeeCCCCCCCCCCCcEEEEEEC-------------------CeEEecccccCCCCCeEecEEEEEEeCC
Q 031128            3 NLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMG-------------------KQKLKTRVVKNNVNPEWNEDLTLSISDS   63 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~-------------------~~~~~T~~~~~~~~P~w~e~f~f~~~~~   63 (165)
                      +..+.|.|++.+|.--........|--|.+.+.                   -..++|.+...+.+|.|+|++.+.+...
T Consensus        24 d~RNdLYVtl~~g~F~~~~k~~aRNIeV~vevr~~~G~~i~~~I~~~sg~~~~se~~S~V~YHnk~P~w~EtIKi~LP~~  103 (220)
T 3l4c_A           24 DVRNDIYVTLVQGDFDKGSKTTAKNVEVTVSVYDEDGKRLEHVIFPGAGDEAISEYKSVIYYQVKQPRWFETVKVAIPIE  103 (220)
T ss_dssp             --CEEEEEEEEEEECCCSSSSSCCCEEEEEEEEETTSCBCCSCEECTTCCSCBSCEECCCCTTCSSCCCCEEEEEEECTT
T ss_pred             CCcccEEEEeeEeEECCCCCCCcceEEEEEEEEcCCCCCcccCEEcCCCCCCceeEEEEEEEcCCCCCceEeEEEeeChh
Confidence            356778888888863221112223444444431                   0356788888889999999999998654


Q ss_pred             C---CcEEEEEEeCCCC----CCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCC
Q 031128           64 N---LPIKLTVYDKDTF----SLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSR  117 (165)
Q Consensus        64 ~---~~l~i~v~d~~~~----~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~  117 (165)
                      .   ..|.|++++...-    ..+..+|.+.+||-+-.  .    .-+..|.--+.++..+
T Consensus       104 ~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~~d--G----~~L~DG~H~L~vyk~d  158 (220)
T 3l4c_A          104 DVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMRYD--G----TTLRDGEHDLIVYKAE  158 (220)
T ss_dssp             SSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBCTT--S----CBCCSEEEEEEEEECC
T ss_pred             hcCCeEEEEEEEEecccccccccCCeeEEEEEEcccCC--C----cEEccCCEEEEEEEcc
Confidence            3   2389999875432    12357899999984311  0    1245666555555543

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=95.92  E-value=0.11  Score=44.90  Aligned_cols=103  Identities=16%  Similarity=0.250  Sum_probs=67.9

Q ss_pred             cEEEEEEEEEeeCCCCCCCCCCCcEEEEEE--CCe----EEecccccCCCCCeEecEEEEEEeC---C-CCcEEEEEEeC
Q 031128            5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKM--GKQ----KLKTRVVKNNVNPEWNEDLTLSISD---S-NLPIKLTVYDK   74 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~--~~~----~~~T~~~~~~~~P~w~e~f~f~~~~---~-~~~l~i~v~d~   74 (165)
                      ...+.|+|..+.++...+  ..+-||.+.+  |++    ...|..+.-..+|.|||.+.|++.-   | +..|.|+||+.
T Consensus       216 ~~~f~i~i~~~~~~~~~~--~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~  293 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNADE--RMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAV  293 (940)
T ss_dssp             CSEEEEEEEEEECCCC-----CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEE
T ss_pred             CCceEEEEEEecccCCCC--CceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEEe
Confidence            457899999999986542  3567777664  432    3445555446789999999998853   2 34599999995


Q ss_pred             CCC--C----------CCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeC
Q 031128           75 DTF--S----------LDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPS  116 (165)
Q Consensus        75 ~~~--~----------~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~  116 (165)
                      ..-  +          .+..+|.+.++|-+...       .+..|.....++|.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~~-------~l~~G~~~l~lw~~  340 (940)
T 2wxf_A          294 VEKAKKARSTKKKSKKADCPIAWANLMLFDYKD-------QLKTGERCLYMWPS  340 (940)
T ss_dssp             C----------------CEEEEEEEEESBCTTS-------BBCCEEEEEECEEC
T ss_pred             cCCccCccccccccccccceEEEEeeeEECCcC-------ccccCCEEEEEeeC
Confidence            321  1          23489999999976443       34567766666663

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=95.73  E-value=0.15  Score=44.55  Aligned_cols=103  Identities=19%  Similarity=0.257  Sum_probs=68.2

Q ss_pred             cEEEEEEEEEeeCCCCCCCCCCCcEEEEEE--CC----eEEecccccCCCCCeEecEEEEEEeC---C-CCcEEEEEEeC
Q 031128            5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKM--GK----QKLKTRVVKNNVNPEWNEDLTLSISD---S-NLPIKLTVYDK   74 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~--~~----~~~~T~~~~~~~~P~w~e~f~f~~~~---~-~~~l~i~v~d~   74 (165)
                      ...+.|+|..+.++........+-||.+.+  |+    ...+|+.+. ..+|.|||.+.|++.-   | ...|.|+||+.
T Consensus       354 ~~~f~v~i~~~~~~n~~~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~~  432 (1091)
T 3hhm_A          354 NSALRIKILCATYVNVNIRDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSICSV  432 (1091)
T ss_dssp             CSEEEEEEEEESCCCCCCSSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEECCC
T ss_pred             CCCEEEEEEEecCCCCCccccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEEEEe
Confidence            357899999998876443334567888775  32    344554443 4578899999998853   2 34599999986


Q ss_pred             CCC----CCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEee
Q 031128           75 DTF----SLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQP  115 (165)
Q Consensus        75 ~~~----~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~  115 (165)
                      ...    .....||.+.++|-+...       .+..|.....+.+
T Consensus       433 ~~~~~~~~~~~~lg~~n~~lfd~~~-------~L~~G~~~L~lW~  470 (1091)
T 3hhm_A          433 KGRKGAKEEHCPLAWGNINLFDYTD-------TLVSGKMALNLWP  470 (1091)
T ss_dssp             CCCC-------CCEEEEEESBCTTC-------BBCCEEEEEECEE
T ss_pred             cCccCcccccceeEEeeeeeEccCC-------eEEcCCeEEEeec
Confidence            542    124579999999976543       4456776666665

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=94.56  E-value=0.65  Score=31.27  Aligned_cols=92  Identities=16%  Similarity=0.184  Sum_probs=62.7

Q ss_pred             CcccEEEEEEEEEeeCCCCCC---CCCCCcE--EEEEECC-eEEecccccCCCCCeEecEEEEEEeCCC--------CcE
Q 031128            2 ENLMGLLRVHVLRGVNLAVRD---VVSSDPY--VVIKMGK-QKLKTRVVKNNVNPEWNEDLTLSISDSN--------LPI   67 (165)
Q Consensus         2 ~~~~g~L~V~v~~a~~L~~~~---~~~~dpy--v~v~~~~-~~~~T~~~~~~~~P~w~e~f~f~~~~~~--------~~l   67 (165)
                      +...+.+.|.|.++.- .+..   .+..+|.  |.+.+-. +.+.|.++. ..+|.+|-+-.|.+...+        ..+
T Consensus        14 ~~gEnlfEihi~~~~~-~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l   91 (156)
T 2yrb_A           14 ERGENLFEIHINKVTF-SSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTI   91 (156)
T ss_dssp             CSSCEEEEEEEEEECC-CHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCE
T ss_pred             cCCCcEEEEEEeEEEE-cHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCE
Confidence            4566889999998873 2211   2334564  5544444 445555554 789999998888885322        358


Q ss_pred             EEEEEeCCCCCCCCeeEEEEEechhhhhh
Q 031128           68 KLTVYDKDTFSLDDKMGDAEFYITPFLEA   96 (165)
Q Consensus        68 ~i~v~d~~~~~~d~~iG~~~i~l~~l~~~   96 (165)
                      .++++..... .-+.||.++|+|.++...
T Consensus        92 ~lELhqa~g~-~~~tla~~~I~l~~lLe~  119 (156)
T 2yrb_A           92 TLEVHQAYST-EYETIAACQLKFHEILEK  119 (156)
T ss_dssp             EEEEEEECSS-CEEEEEEEEECCSHHHHC
T ss_pred             EEEEEEeeCC-CceEEEEEEEEhHHhhCc
Confidence            9999887532 557999999999999874

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=89.69  E-value=0.45  Score=41.74  Aligned_cols=102  Identities=14%  Similarity=0.212  Sum_probs=62.3

Q ss_pred             cEEEEEEEEEeeCCCCCCCCCCCcEEEE--EECCeE----EecccccCCCCCeEecEEEEEEeCCC----CcEEEEEEeC
Q 031128            5 MGLLRVHVLRGVNLAVRDVVSSDPYVVI--KMGKQK----LKTRVVKNNVNPEWNEDLTLSISDSN----LPIKLTVYDK   74 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v--~~~~~~----~~T~~~~~~~~P~w~e~f~f~~~~~~----~~l~i~v~d~   74 (165)
                      ...+.|+|..+.++...+  ..+-||.+  ..|++.    ..|..+.-..+|.|||.+.|++.-.+    ..|.|+||+.
T Consensus       352 ~~~f~i~i~~~~~~~~~~--~~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~~~  429 (1092)
T 2y3a_A          352 NNPFQITLVKGNKLNTEE--TVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVYAV  429 (1092)
T ss_dssp             CSEEEEEECCCCCCCCCS--SCCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECCCC
T ss_pred             CCCEEEEEEEeccCCCCC--CceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEEEEe
Confidence            357889999998886543  34566654  445433    34544444678999999999886432    4499999985


Q ss_pred             CCC----------------------CCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEee
Q 031128           75 DTF----------------------SLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQP  115 (165)
Q Consensus        75 ~~~----------------------~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~  115 (165)
                      ...                      +.+..+|.+.++|-+...       .+..|.....++|
T Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~~-------~l~~G~~~l~lw~  485 (1092)
T 2y3a_A          430 LDKVKTKKSTKTINPSKYQTIRKAGKVHYPVAWVNTMVFDFKG-------QLRSGDVILHSWS  485 (1092)
T ss_dssp             ------------------------------CCEEEEESBCTTC-------BBCCEEEECCCCT
T ss_pred             cCccccccccccccccccccccccccccceeEEEeeeeECCcC-------cccCCCeEEEEee
Confidence            311                      012378888888865443       3345665555555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	165
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	1e-18
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	9e-17
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	4e-15
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	2e-14
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	2e-13
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	3e-13
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	3e-13
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	3e-13
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	1e-12
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	4e-12
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	6e-12
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	9e-12
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	6e-11
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	1e-10
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	1e-09
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	1e-09
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	2e-09
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	2e-08
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	1e-05
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	7e-05

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.2 bits (184), Expect = 1e-18
 Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 13/128 (10%)

Query: 5   MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSN 64
           M LL V V +      ++    + YV +K+   K  T  V+ +  P W +D    I+  +
Sbjct: 1   MSLLCVGVKKAKFDGAQE--KFNTYVTLKVQNVKSTTIAVRGS-QPSWEQDFMFEINRLD 57

Query: 65  LPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLE---------GLPNGTIVTKIQP 115
           L + + V++K     D  +G     +    ++ +              + +  I     P
Sbjct: 58  LGLTVEVWNKGLIW-DTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDP 116

Query: 116 SRENCLAE 123
           +    L +
Sbjct: 117 TFHRILLD 124

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 70.2 bits (171), Expect = 9e-17
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 6   GLLRVHVLRGVNLAVRDVVS-SDPYVVIKMGKQKLKTRVVK-NNVNPEWNEDLTLSISDS 63
           G L V ++    L   D ++  DPYV +    Q  K+ V +     PEWNE    ++S+ 
Sbjct: 10  GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69

Query: 64  NLPIKLTVYDKDTFSLDDKMGDAEFYITPFLE 95
              +K  ++DKD  + DD +G+A   + P   
Sbjct: 70  TTELKAKIFDKDVGTEDDAVGEATIPLEPVFV 101

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (159), Expect = 4e-15
 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 8/118 (6%)

Query: 5   MGLLRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDS 63
           +G+L+V VL+  +L   D    SDP+ ++++G  +L+T  V  N+NPEWN+  T  I D 
Sbjct: 5   VGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI 64

Query: 64  NLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEA-------LKMRLEGLPNGTIVTKIQ 114
           +  +++TV+D+D     D +G     +    +            LE    G I  ++ 
Sbjct: 65  HDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMD 122

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.3 bits (156), Expect = 2e-14
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 6   GLLRVHVLRGVNLAVRDVVS-SDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLTLS 59
            +L V V    NL   D    SDPYV +K+      + K KT+ +K ++NPEWNE     
Sbjct: 15  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74

Query: 60  ISDSNLPIKL--TVYDKDTFSLDDKMGDAEF 88
           + +S+   +L   ++D D  S +D MG   F
Sbjct: 75  LKESDKDRRLSVEIWDWDLTSRNDFMGSLSF 105

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.0 bits (150), Expect = 2e-13
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 9/92 (9%)

Query: 6   GLLRVHVLRGVNLAVRDVVSS-DPYVVIKMGKQ-----KLKTRVVKNNVNPEWNEDLTLS 59
             L V VL+  +L   DV    DPYV + +        K KT V K   N  +NE     
Sbjct: 15  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 74

Query: 60  ISDSNLP---IKLTVYDKDTFSLDDKMGDAEF 88
           I   +L    ++  V D +  S ++ +G    
Sbjct: 75  IPCESLEEISVEFLVLDSERGSRNEVIGRLVL 106

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.3 bits (148), Expect = 3e-13
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 7/90 (7%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYV---VIKMGKQKLKTRVVKNNVNPEWNEDLTLSIS 61
             L V +++   L   D+  +SDPYV   ++   K+K +T+V +  +NP +NE  T  + 
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93

Query: 62  DSNLP---IKLTVYDKDTFSLDDKMGDAEF 88
            S L    + + VYD D FS  D +G+ + 
Sbjct: 94  YSELGGKTLVMAVYDFDRFSKHDIIGEFKV 123

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.0 bits (147), Expect = 3e-13
 Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 9/110 (8%)

Query: 6   GLLRVHVLRGVNLAVRDV-VSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLS 59
           G L V ++R V+LA  D    SDP+V + +      K K KT++ K  +NPE+NE+    
Sbjct: 15  GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74

Query: 60  ISDSNLP---IKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPN 106
           I  S+L    + ++V+D D    +D +G  +  I+   E LK   E L N
Sbjct: 75  IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKN 124

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (146), Expect = 3e-13
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 12/95 (12%)

Query: 6   GLLRVHVLRGVNLAVRDVV-SSDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLTLS 59
             L V +L   +L  R+     +PYV I        K K +T+ VK  + P+WN+    S
Sbjct: 14  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 73

Query: 60  I----SDSNLPIKLTVYDKDTFSLD--DKMGDAEF 88
                      +++T++D+     +  + +G+   
Sbjct: 74  PVHRREFRERMLEITLWDQARVREEESEFLGEILI 108

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (143), Expect = 1e-12
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 6   GLLRVHVLRGVNLAVRDVVS--SDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSI 60
               V++     L   D  S  SDPY+ + +    K K+KTRV++  ++P ++E  T   
Sbjct: 22  KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81

Query: 61  SDS----NLPIKLTVYDKDTFSLDDKMGDAEF 88
                   L +  T+   D FS DD +G+   
Sbjct: 82  IPYTQIQELALHFTILSFDRFSRDDIIGEVLI 113

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.8 bits (139), Expect = 4e-12
 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 16/123 (13%)

Query: 8   LRVHVLRGVNLAVRDVVS---SDPYVVIKM-----GKQKLKTRVVKNN-VNPEWNEDLTL 58
           LRV ++ G  L   +       DP V++++          +T V+ NN  NP W+ +   
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 59  SISDSNL-PIKLTVYDKDTFSLDDKMGDAEFYITPFLEA------LKMRLEGLPNGTIVT 111
            ++  +L  ++  V D D+ S +D +G +        +       L    +  P+ T+  
Sbjct: 66  EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSKNGDQHPSATLFV 125

Query: 112 KIQ 114
           KI 
Sbjct: 126 KIS 128

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 6e-12
 Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 2/104 (1%)

Query: 3   NLMGLLRVHVLRGVNLAVRDVV-SSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSIS 61
            +   L++ V+       +       PYV + +  Q  KT    N  +P+W + LT+ ++
Sbjct: 3   TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT 62

Query: 62  DSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLP 105
             +  +   V+   T   D  +G A   I   L++  M+LE + 
Sbjct: 63  PVS-KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVV 105

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 57.2 bits (137), Expect = 9e-12
 Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 18/131 (13%)

Query: 1   MENLMGLLRVHVLRGVNLAVRDVV------------SSDPYVVIKMGKQKL-KTRVVKNN 47
           M    GLL++ +   V+L                    DPY+ + +   ++ +T   +  
Sbjct: 1   MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKT 60

Query: 48  VNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEG---- 103
            +P W+++    + +    I+L V+       DD + +        L+      E     
Sbjct: 61  NSPAWHDEFVTDVCNGR-KIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL 119

Query: 104 LPNGTIVTKIQ 114
            P G +   I 
Sbjct: 120 EPEGKVYVIID 130

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.9 bits (131), Expect = 6e-11
 Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 19/103 (18%)

Query: 5   MGLLRVHVLRGVNLAVRDVVS-SDPYVVIKM--------------GKQKLKTRVVKNNVN 49
           +G L +H+L+  NL  RD    SDP+V + +               + K +T+ V+ ++N
Sbjct: 17  LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76

Query: 50  PEWNEDLTLSISD----SNLPIKLTVYDKDTFSLDDKMGDAEF 88
           PEWN+ +              +++TV+D D FS +D +G+   
Sbjct: 77  PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLI 119

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.8 bits (131), Expect = 1e-10
 Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 9/110 (8%)

Query: 6   GLLRVHVLRGVNLAVRDVVS-SDPYVVIKMGKQKL-----KTRVVKNNVNPEWNEDLTLS 59
           G L V +L   NL   DV   SDPYV I + +        KT + KN +NP +NE  +  
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84

Query: 60  ISDSNL---PIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPN 106
           +    +    + +TV D D    +D +G            L+   + L N
Sbjct: 85  VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLAN 134

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.7 bits (123), Expect = 1e-09
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 9/93 (9%)

Query: 5   MGLLRVHVLRGVNLAVRDVVSS-DPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTL 58
            GLL V +++  NL   D+    DPYV   +       +K KT + KN +NP +NE L  
Sbjct: 19  AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 78

Query: 59  SISDS---NLPIKLTVYDKDTFSLDDKMGDAEF 88
            ++     N+ + + V D D    ++ +G    
Sbjct: 79  DVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 111

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (123), Expect = 1e-09
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 9/89 (10%)

Query: 8  LRVHVLRGVNLAVRDVV----SSDPYVVIKMGK---QKLKTRVVKNNVNPEWNEDLTLSI 60
            V VLR   +          + DPYV + +      + +TR   N++NP WNE     +
Sbjct: 5  FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 61 SDSNL-PIKLTVYDKDTFSLDDKMGDAEF 88
            +    +++T+ D +    D+ +G A F
Sbjct: 65 DPNQENVLEITLMDANYVM-DETLGTATF 92

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.7 bits (120), Expect = 2e-09
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 6   GLLRVHVLRGVNLAVRDV-VSSDPYVVI---KMGKQKLKTRVVKNNVNPEWNEDLTLSIS 61
             L V +L+ ++L  +D    SDPYV I      K+K +T+V +  +NP +NE    S+ 
Sbjct: 18  DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVP 77

Query: 62  DSNLP---IKLTVYDKDTFSLDDKMGDAEF 88
            + L    +  +VYD D FS  D +G    
Sbjct: 78  LAELAQRKLHFSVYDFDRFSRHDLIGQVVL 107

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 2e-08
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 9/92 (9%)

Query: 6   GLLRVHVLRGVNLAVRDVVSSDPYVVIKM----GKQKLKTRVVKNNVNPEWNEDLTLSIS 61
             L V  L  V          D YV   +    G  + +T + K  ++  W E L L ++
Sbjct: 26  AELFVTRLEAVTSNHDG--GCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLA 83

Query: 62  DSNLP---IKLTVYDKDTFSLDDKMGDAEFYI 90
           +  LP   + LT+   D FS     G+    +
Sbjct: 84  EEELPTATLTLTLRTCDRFSRHSVAGELRLGL 115

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (94), Expect = 1e-05
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 14/79 (17%)

Query: 8  LRVHVLRGVNLAVRDVVSSDPYVVIKMG--------KQKLKTRVVKNNVNPEWNEDLTLS 59
          L + V+ G  L+ R V     YV +++         + + K     N++NP W E+  + 
Sbjct: 3  LSITVISGQFLSERSV---RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVF 59

Query: 60 ISDSNLP---IKLTVYDKD 75
                    +++ V ++ 
Sbjct: 60 EKILMPELASLRVAVMEEG 78

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 7e-05
 Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 6/66 (9%)

Query: 25 SSDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSL 79
          +S P+  +KM       +       K  + PEW       I      I++ +       +
Sbjct: 23 ASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHI-YEGRVIQIVLMRAAEDPM 81

Query: 80 DDKMGD 85
           +    
Sbjct: 82 SEVTVG 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	165
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.96
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.95
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.94
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.94
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.93
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.9
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.88
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.88
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.88
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.86
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.86
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.83
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.82
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.82
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.82
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.8
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.8
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.79
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.73
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.68
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	96.78
d2yrba1	142	Fantom {Human (Homo sapiens) [TaxId: 9606]}	93.86

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=6.3e-28  Score=161.76  Aligned_cols=127  Identities=25%  Similarity=0.407  Sum_probs=108.6

Q ss_pred             CcccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccC-CCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCC
Q 031128            2 ENLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKN-NVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSL   79 (165)
Q Consensus         2 ~~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~-~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~   79 (165)
                      ..+.|.|.|+|++|++|+..+ .+.+||||+++++.+.++|+++++ +.||.|||+|.|.+......|.|+|||++.+++
T Consensus         6 ~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~~~~   85 (136)
T d1wfja_           6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTE   85 (136)
T ss_dssp             CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTT
T ss_pred             CCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecCCCC
Confidence            368899999999999999988 789999999999999999999874 789999999999998777779999999999999


Q ss_pred             CCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeec--cceeeeEEEEEEEE
Q 031128           80 DDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLR--NVEVGEVKIQLEWI  157 (165)
Q Consensus        80 d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~--~~~~G~l~l~l~~~  157 (165)
                      |++||++.|+|.++......                                    ...|+.+.  ....|+|+|.++|.
T Consensus        86 d~~iG~~~i~L~~l~~~~~~------------------------------------~~~~~~l~~~~~~~G~i~l~l~~~  129 (136)
T d1wfja_          86 DDAVGEATIPLEPVFVEGSI------------------------------------PPTAYNVVKDEEYKGEIWVALSFK  129 (136)
T ss_dssp             TCCSEEEEEESHHHHHHSEE------------------------------------EEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEhHHhcccCCc------------------------------------CcEEEEecCCCccCEEEEEEEEEE
Confidence            99999999999998764321                                    24556553  34479999999999


Q ss_pred             eCCCCCC
Q 031128          158 DIPGSRG  164 (165)
Q Consensus       158 ~~~~~~~  164 (165)
                      |...+.|
T Consensus       130 p~~p~~g  136 (136)
T d1wfja_         130 PSGPSSG  136 (136)
T ss_dssp             ECCSCCC
T ss_pred             eCCCCCC
Confidence            9876654

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.3e-28  Score=161.96  Aligned_cols=93  Identities=31%  Similarity=0.577  Sum_probs=87.1

Q ss_pred             cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCC
Q 031128            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDD   81 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~   81 (165)
                      +++|.|+|+|++|++|+.++ .+.+||||++++++++++|++++++.||.|||.|.|.+..+...|.|+|||++.+++|+
T Consensus         3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~~d~   82 (126)
T d2ep6a1           3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPD   82 (126)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEE
T ss_pred             CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCcCcc
Confidence            47899999999999999988 78999999999999999999999999999999999999877777999999999998999


Q ss_pred             eeEEEEEechhhhh
Q 031128           82 KMGDAEFYITPFLE   95 (165)
Q Consensus        82 ~iG~~~i~l~~l~~   95 (165)
                      +||++.++|.++..
T Consensus        83 ~lG~~~i~l~~l~~   96 (126)
T d2ep6a1          83 FLGKVAIPLLSIRD   96 (126)
T ss_dssp             ECCBCEEEGGGCCS
T ss_pred             eEEEEEEEHHHCCC
Confidence            99999999988754

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.9e-26  Score=150.49  Aligned_cols=116  Identities=22%  Similarity=0.412  Sum_probs=101.1

Q ss_pred             cEEEEEEEEEeeCCCCCC----CCCCCcEEEEEECC---eEEecccccCCCCCeEecEEEEEEeCCCC-cEEEEEEeCCC
Q 031128            5 MGLLRVHVLRGVNLAVRD----VVSSDPYVVIKMGK---QKLKTRVVKNNVNPEWNEDLTLSISDSNL-PIKLTVYDKDT   76 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~----~~~~dpyv~v~~~~---~~~~T~~~~~~~~P~w~e~f~f~~~~~~~-~l~i~v~d~~~   76 (165)
                      .+.|+|+|++|+||+...    .+.+||||++.++.   ++++|+++.++.||.|||+|.|.+..... .|.|+|||++.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            578999999999998753    57899999999974   67899999999999999999999976654 49999999987


Q ss_pred             CCCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccceeeeEEEEEEE
Q 031128           77 FSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEW  156 (165)
Q Consensus        77 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~  156 (165)
                      . +|++||++.++|+++..+..                                     .+.|++|.....|++++.+++
T Consensus        82 ~-~d~~lG~~~i~L~~l~~~~~-------------------------------------~~~~~~L~~~~~g~i~~~l~~  123 (126)
T d1rlwa_          82 V-MDETLGTATFTVSSMKVGEK-------------------------------------KEVPFIFNQVTEMVLEMSLEV  123 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCE-------------------------------------EEEEEEETTTEEEEEEEEEEC
T ss_pred             C-CCCeEEEEEEEHHHccCCCe-------------------------------------EEEEEEccCCCeEEEEEEEEE
Confidence            6 68999999999998865432                                     278999999999999999998


Q ss_pred             Ee
Q 031128          157 ID  158 (165)
Q Consensus       157 ~~  158 (165)
                      .|
T Consensus       124 ~~  125 (126)
T d1rlwa_         124 AS  125 (126)
T ss_dssp             CC
T ss_pred             Ee
Confidence            76

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.94  E-value=2e-25  Score=149.52  Aligned_cols=122  Identities=17%  Similarity=0.365  Sum_probs=104.4

Q ss_pred             CCcccEEEEEEEEEeeCCCCCC------------CCCCCcEEEEEECCeE-EecccccCCCCCeEecEEEEEEeCCCCcE
Q 031128            1 MENLMGLLRVHVLRGVNLAVRD------------VVSSDPYVVIKMGKQK-LKTRVVKNNVNPEWNEDLTLSISDSNLPI   67 (165)
Q Consensus         1 ~~~~~g~L~V~v~~a~~L~~~~------------~~~~dpyv~v~~~~~~-~~T~~~~~~~~P~w~e~f~f~~~~~~~~l   67 (165)
                      |+=..|.|.|+|++|++|++.+            .+.+||||+++++++. .+|+++.++.+|.|||+|.|.+.+ ...|
T Consensus         1 ~~~~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~-~~~l   79 (136)
T d1gmia_           1 MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN-GRKI   79 (136)
T ss_dssp             CCCEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEE
T ss_pred             CccEEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec-CCce
Confidence            5667899999999999998741            5678999999999866 589999999999999999999975 4569


Q ss_pred             EEEEEeCCCCCCCCeeEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeecccee
Q 031128           68 KLTVYDKDTFSLDDKMGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEV  147 (165)
Q Consensus        68 ~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~  147 (165)
                      .|+|||++.+++|++||.+.|+|+++......                                   ..+.|++|+  ++
T Consensus        80 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~-----------------------------------~~~~w~~L~--p~  122 (136)
T d1gmia_          80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSR-----------------------------------HFEDWIDLE--PE  122 (136)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCS-----------------------------------EEEEEEECB--SS
T ss_pred             EEEEEEecCCCCceeEEEEEEEHHHhhhcCCc-----------------------------------ceeEEEeCC--CC
Confidence            99999999999999999999999998765322                                   248899997  68


Q ss_pred             eeEEEEEEEEeCC
Q 031128          148 GEVKIQLEWIDIP  160 (165)
Q Consensus       148 G~l~l~l~~~~~~  160 (165)
                      |+|++++++.+-+
T Consensus       123 G~v~l~v~~~~~~  135 (136)
T d1gmia_         123 GKVYVIIDLSGSS  135 (136)
T ss_dssp             CEEEEEEEEEEEE
T ss_pred             cEEEEEEEEEeCC
Confidence            9999999998754

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.3e-24  Score=144.95  Aligned_cols=92  Identities=22%  Similarity=0.348  Sum_probs=83.8

Q ss_pred             cEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCee
Q 031128            5 MGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKM   83 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~i   83 (165)
                      .+.|.|+|++|++++..+ .+.+||||++.++++.++|++++++.||.|||.|.|.+.. ...|.|+|||++.+++|++|
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~-~~~l~~~V~d~d~~~~d~~i   83 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDVLL   83 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCEEE
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe-cceeEEEEEEccCCCCCceE
Confidence            478999999999998877 7789999999999999999999999999999999999864 56799999999999999999


Q ss_pred             EEEEEechhhhhhh
Q 031128           84 GDAEFYITPFLEAL   97 (165)
Q Consensus        84 G~~~i~l~~l~~~~   97 (165)
                      |++.++|.++....
T Consensus        84 G~~~i~L~~l~~~~   97 (133)
T d2nq3a1          84 GTAALDIYETLKSN   97 (133)
T ss_dssp             EEEEEEHHHHHHHT
T ss_pred             EEEEEEHHHhhhhc
Confidence            99999999987654

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=5.6e-24  Score=141.61  Aligned_cols=91  Identities=34%  Similarity=0.516  Sum_probs=81.1

Q ss_pred             cEEEEEEEEEeeCCCCCC-CCCCCcEEEEEE-----CCeEEecccccCCCCCeEecEEEEEEeCCC--CcEEEEEEeCCC
Q 031128            5 MGLLRVHVLRGVNLAVRD-VVSSDPYVVIKM-----GKQKLKTRVVKNNVNPEWNEDLTLSISDSN--LPIKLTVYDKDT   76 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~-----~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~--~~l~i~v~d~~~   76 (165)
                      .+.|.|+|++|++|+.++ .+.+||||++++     +..+++|++++++.||.|||.|.|.+....  ..|.|+|||++.
T Consensus        14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~   93 (132)
T d1a25a_          14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL   93 (132)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC
Confidence            468999999999999988 788999999998     456789999999999999999999986543  359999999999


Q ss_pred             CCCCCeeEEEEEechhhhh
Q 031128           77 FSLDDKMGDAEFYITPFLE   95 (165)
Q Consensus        77 ~~~d~~iG~~~i~l~~l~~   95 (165)
                      +++|++||.+.|++.++..
T Consensus        94 ~~~d~~iG~~~i~l~~l~~  112 (132)
T d1a25a_          94 TSRNDFMGSLSFGISELQK  112 (132)
T ss_dssp             SSCCEEEEEEEEEHHHHTT
T ss_pred             CCCCcEeEEEEEeHHHcCC
Confidence            9999999999999998754

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=8.5e-22  Score=130.76  Aligned_cols=90  Identities=23%  Similarity=0.430  Sum_probs=75.9

Q ss_pred             EEEEEEEEEeeCCCCCC---CCCCCcEEEEEEC-----CeEEecccccCC-CCCeEecEEEEEEeCCC-CcEEEEEEeCC
Q 031128            6 GLLRVHVLRGVNLAVRD---VVSSDPYVVIKMG-----KQKLKTRVVKNN-VNPEWNEDLTLSISDSN-LPIKLTVYDKD   75 (165)
Q Consensus         6 g~L~V~v~~a~~L~~~~---~~~~dpyv~v~~~-----~~~~~T~~~~~~-~~P~w~e~f~f~~~~~~-~~l~i~v~d~~   75 (165)
                      ..|.|+|++|++|+..+   .+.+||||++++.     .++++|++++++ .||.|||+|.|.+..+. ..|.|+|||++
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            57999999999997543   6789999999983     578899988766 79999999999987654 34899999999


Q ss_pred             CCCCCCeeEEEEEechhhhh
Q 031128           76 TFSLDDKMGDAEFYITPFLE   95 (165)
Q Consensus        76 ~~~~d~~iG~~~i~l~~l~~   95 (165)
                      .+++|++||++.++|+.+..
T Consensus        84 ~~~~d~~iG~~~i~l~~l~~  103 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLKQ  103 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBCC
T ss_pred             CCCCCcEEEEEEEEEeccCC
Confidence            99999999999999987754

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=4.1e-22  Score=131.57  Aligned_cols=88  Identities=23%  Similarity=0.393  Sum_probs=79.3

Q ss_pred             cEEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCeeE
Q 031128            5 MGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDKMG   84 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~iG   84 (165)
                      ++.|.|+|.+|++|.+++  ..||||++++++.+.+|.+++ +.||.|||.|.|.+..+...|.|+|||++.. +|++||
T Consensus         1 ~~~L~V~v~~a~~l~~~~--~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~-~d~~lG   76 (128)
T d2cjta1           1 MSLLCVGVKKAKFDGAQE--KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRLDLGLTVEVWNKGLI-WDTMVG   76 (128)
T ss_dssp             CEEEEEEEEEEECSSCGG--GCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCCSSEEEEEEEECCSS-CEEEEE
T ss_pred             CeEEEEEEEEEECCCCCC--CcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccccceEEEEEEeCCCc-CCcceE
Confidence            478999999999999876  679999999999999999886 4599999999999988888899999999887 699999


Q ss_pred             EEEEechhhhhh
Q 031128           85 DAEFYITPFLEA   96 (165)
Q Consensus        85 ~~~i~l~~l~~~   96 (165)
                      ++.|+|+++..+
T Consensus        77 ~~~I~L~~l~~~   88 (128)
T d2cjta1          77 TVWIPLRTIRQS   88 (128)
T ss_dssp             EEEEEGGGSCBC
T ss_pred             EEEEEehhhccC
Confidence            999999998653

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=2.1e-22  Score=135.63  Aligned_cols=93  Identities=29%  Similarity=0.442  Sum_probs=81.4

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEE---CCeEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCCC
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKDT   76 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~---~~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~~   76 (165)
                      ..+.|.|+|++|+||+..+ .+.+||||++++   +.+.++|++++++.||.|||.|.|.+...   ...|.|+|||++.
T Consensus        32 ~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~  111 (143)
T d1rsya_          32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR  111 (143)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCC
Confidence            3568999999999999888 788999999998   45678999999999999999999987543   3459999999999


Q ss_pred             CCCCCeeEEEEEechhhhhh
Q 031128           77 FSLDDKMGDAEFYITPFLEA   96 (165)
Q Consensus        77 ~~~d~~iG~~~i~l~~l~~~   96 (165)
                      ++++++||++.|+|.++..+
T Consensus       112 ~~~~~~iG~~~i~L~~~~~~  131 (143)
T d1rsya_         112 FSKHDIIGEFKVPMNTVDFG  131 (143)
T ss_dssp             SSCCEEEEEEEEEGGGCCCS
T ss_pred             CCCCcEEEEEEEEchhccCC
Confidence            98999999999999987543

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=1.1e-22  Score=136.78  Aligned_cols=95  Identities=29%  Similarity=0.472  Sum_probs=80.6

Q ss_pred             cEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC--------------eEEecccccCCCCCeEecEEEEEEeC----CCC
Q 031128            5 MGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK--------------QKLKTRVVKNNVNPEWNEDLTLSISD----SNL   65 (165)
Q Consensus         5 ~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~--------------~~~~T~~~~~~~~P~w~e~f~f~~~~----~~~   65 (165)
                      .|.|.|+|++|+||+..+ .+.+||||++++..              .+++|++++++.||.|||.|.|....    ...
T Consensus        17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~   96 (142)
T d1rh8a_          17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence            478999999999999988 88899999999842              23579999999999999999997533    234


Q ss_pred             cEEEEEEeCCCCCCCCeeEEEEEechhhhhhhcc
Q 031128           66 PIKLTVYDKDTFSLDDKMGDAEFYITPFLEALKM   99 (165)
Q Consensus        66 ~l~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~   99 (165)
                      .|.|+|||++.+++|++||++.|+|.++......
T Consensus        97 ~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~  130 (142)
T d1rh8a_          97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNT  130 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTC
T ss_pred             EEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCc
Confidence            5999999999999999999999999998765443

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=2e-21  Score=128.82  Aligned_cols=90  Identities=31%  Similarity=0.451  Sum_probs=79.3

Q ss_pred             cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEeCC
Q 031128            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG---KQKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYDKD   75 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~---~~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d~~   75 (165)
                      ...+.|.|+|++|+||+..+ .+.+||||++++.   .++++|++++++.||.|||.|.|.+...   ...|.|+|||++
T Consensus        15 ~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~   94 (130)
T d1dqva1          15 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD   94 (130)
T ss_dssp             SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred             CCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcC
Confidence            46789999999999999888 7889999999984   4678999999999999999999998653   345999999999


Q ss_pred             CCCCCCeeEEEEEechh
Q 031128           76 TFSLDDKMGDAEFYITP   92 (165)
Q Consensus        76 ~~~~d~~iG~~~i~l~~   92 (165)
                      .+++|++||++.|++..
T Consensus        95 ~~~~d~~iG~~~i~~~~  111 (130)
T d1dqva1          95 RFSRHDLIGQVVLDNLL  111 (130)
T ss_dssp             SSSCCCEEEEEECCCTT
T ss_pred             CCCCCceEEEEEECchh
Confidence            99999999999998654

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.1e-20  Score=122.92  Aligned_cols=93  Identities=24%  Similarity=0.404  Sum_probs=74.4

Q ss_pred             cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEE-EeCC---CCcEEEEEE
Q 031128            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLS-ISDS---NLPIKLTVY   72 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~-~~~~---~~~l~i~v~   72 (165)
                      ...+.|.|+|++|+||+..+ .+.+||||++.+.     ..+++|++++++.+|.|||.|.|. +...   ...|.|+||
T Consensus        11 ~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~   90 (125)
T d2bwqa1          11 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW   90 (125)
T ss_dssp             TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEE
Confidence            45678999999999999887 7889999999983     457899999999999999999997 4322   235999999


Q ss_pred             eCCCCC--CCCeeEEEEEechhhhh
Q 031128           73 DKDTFS--LDDKMGDAEFYITPFLE   95 (165)
Q Consensus        73 d~~~~~--~d~~iG~~~i~l~~l~~   95 (165)
                      |.+.++  ++++||++.++|+++..
T Consensus        91 d~~~~~~~~~~~iG~~~i~l~~~~~  115 (125)
T d2bwqa1          91 DQARVREEESEFLGEILIELETALL  115 (125)
T ss_dssp             EC-------CEEEEEEEEEGGGCCC
T ss_pred             ECCCCCCCCCeeEEEEEEEchhcCC
Confidence            999764  35599999999988764

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=5.6e-20  Score=122.56  Aligned_cols=94  Identities=33%  Similarity=0.450  Sum_probs=81.2

Q ss_pred             cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEecccccCCCCCeEecEEEEEEeCCC---CcEEEEEEe
Q 031128            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG-----KQKLKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYD   73 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~-----~~~~~T~~~~~~~~P~w~e~f~f~~~~~~---~~l~i~v~d   73 (165)
                      ...+.|.|+|++|+||+..+ .+.+||||++++.     ..+++|++++++.+|.|||.|.|.+...+   ..|.|+|||
T Consensus        12 ~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~   91 (137)
T d2cm5a1          12 TQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWD   91 (137)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeee
Confidence            35678999999999999887 7789999999983     35679999999999999999999986432   459999999


Q ss_pred             CCCCCCCCeeEEEEEechhhhhh
Q 031128           74 KDTFSLDDKMGDAEFYITPFLEA   96 (165)
Q Consensus        74 ~~~~~~d~~iG~~~i~l~~l~~~   96 (165)
                      .+.++++++||++.+++..+..+
T Consensus        92 ~~~~~~~~~iG~~~i~l~~~~~~  114 (137)
T d2cm5a1          92 YDIGKSNDYIGGCQLGISAKGER  114 (137)
T ss_dssp             CCSSSCCEEEEEEEEETTCCHHH
T ss_pred             CCCCCCCCEEEEEEeCccccCcc
Confidence            99999999999999999876543

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.4e-20  Score=123.42  Aligned_cols=92  Identities=22%  Similarity=0.255  Sum_probs=78.2

Q ss_pred             ccEEEEEEEEEeeCCCCCCCCCCCcEEEEEEC----CeEEecccccCCCCCeEecEEEEEEeCCC---CcEEEEEEeCCC
Q 031128            4 LMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMG----KQKLKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYDKDT   76 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~~~~~dpyv~v~~~----~~~~~T~~~~~~~~P~w~e~f~f~~~~~~---~~l~i~v~d~~~   76 (165)
                      ..+.|.|+|++|++|+.  .+.+||||++.+.    ...++|++++++.+|.|||.|.|.+...+   ..|.|+|||++.
T Consensus        24 ~~~~L~V~v~~a~~L~~--~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~  101 (138)
T d1wfma_          24 QKAELFVTRLEAVTSNH--DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR  101 (138)
T ss_dssp             TTTEEEEEEEEEECCCC--SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEcCCCCC--CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeecc
Confidence            45789999999999964  3578999999984    24578999999999999999999986532   459999999999


Q ss_pred             CCCCCeeEEEEEechhhhhhh
Q 031128           77 FSLDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        77 ~~~d~~iG~~~i~l~~l~~~~   97 (165)
                      ++++++||++.|+|.++....
T Consensus       102 ~~~~~~iG~~~i~L~~l~~~~  122 (138)
T d1wfma_         102 FSRHSVAGELRLGLDGTSVPL  122 (138)
T ss_dssp             SCTTSCSEEEEEESSSSSSCT
T ss_pred             cccceeeeEEEEEhHHccCCC
Confidence            999999999999999876543

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=7e-20  Score=122.42  Aligned_cols=92  Identities=26%  Similarity=0.417  Sum_probs=78.3

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CC-CCCcEEEEEE---CCeEEecccccCCCCCeEecEEEEEEeCCC----CcEEEEEEeC
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VV-SSDPYVVIKM---GKQKLKTRVVKNNVNPEWNEDLTLSISDSN----LPIKLTVYDK   74 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~-~~dpyv~v~~---~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~----~~l~i~v~d~   74 (165)
                      ..+.|.|+|++|+||+..+ .+ .+||||++.+   ...+++|++++++.||.|||.|.|......    ..|.|+|||.
T Consensus        20 ~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~   99 (138)
T d1ugka_          20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSF   99 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEEC
Confidence            4568999999999999887 43 5799999998   456889999999999999999999743222    3599999999


Q ss_pred             CCCCCCCeeEEEEEechhhhh
Q 031128           75 DTFSLDDKMGDAEFYITPFLE   95 (165)
Q Consensus        75 ~~~~~d~~iG~~~i~l~~l~~   95 (165)
                      +.++++++||++.++|.++..
T Consensus       100 d~~~~~~~iG~~~i~L~~~~~  120 (138)
T d1ugka_         100 DRFSRDDIIGEVLIPLSGIEL  120 (138)
T ss_dssp             CSSCCCCCCEEEEEECTTCCC
T ss_pred             CCCCCCcEEEEEEEEcccccC
Confidence            999999999999999988743

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=2.8e-19  Score=121.89  Aligned_cols=92  Identities=30%  Similarity=0.392  Sum_probs=79.5

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCCC---CcEEEEEEeC
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYDK   74 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~~---~~l~i~v~d~   74 (165)
                      ..+.|.|+|++|+||+..+ .+.+||||++++..     ..++|++++++.||.|||+|.|.+...+   ..|.|+|||.
T Consensus        23 ~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~  102 (157)
T d1uowa_          23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY  102 (157)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred             CCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEccc
Confidence            4578999999999999887 78999999999852     3458999999999999999999986543   3599999999


Q ss_pred             CCCCCCCeeEEEEEechhhhh
Q 031128           75 DTFSLDDKMGDAEFYITPFLE   95 (165)
Q Consensus        75 ~~~~~d~~iG~~~i~l~~l~~   95 (165)
                      +.++++++||++.|++.....
T Consensus       103 ~~~~~~~~iG~~~i~l~~~~~  123 (157)
T d1uowa_         103 DKIGKNDAIGKVFVGYNSTGA  123 (157)
T ss_dssp             CSSSCCCEEEEEEEETTCCHH
T ss_pred             CCCCCCceeEEEEEecccCCh
Confidence            999999999999999976543

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=3e-19  Score=116.97  Aligned_cols=111  Identities=16%  Similarity=0.267  Sum_probs=84.8

Q ss_pred             EEEEEEEeeCCCCCCCCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCCCCcEEEEEEeCCCCCCCCe
Q 031128            8 LRVHVLRGVNLAVRDVVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSLDDK   82 (165)
Q Consensus         8 L~V~v~~a~~L~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~~~~l~i~v~d~~~~~~d~~   82 (165)
                      +.|.+..+..++.. .+.+||||++++.+     ...+|++.++|.||.|||+|.|.+.+ ...|.|.|||++    +++
T Consensus         7 ~~~~~~~~~~~~~~-~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d----d~~   80 (123)
T d1bdya_           7 ISFNSYELGSLQAE-DDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA----EDP   80 (123)
T ss_dssp             EEEEEEECCTTCCC-CCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET----TEE
T ss_pred             EEEEEeecccCCCC-CCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEcc----ccc
Confidence            34444444433332 67899999999963     23568888999999999999999865 456999999975    789


Q ss_pred             eEEEEEechhhhhhhcccccCCCCceEEEEEeeCCCccccccceeEEeCCcEEeeeeeeeccceeeeEEEEEEEEe
Q 031128           83 MGDAEFYITPFLEALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVKIQLEWID  158 (165)
Q Consensus        83 iG~~~i~l~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~G~l~l~l~~~~  158 (165)
                      +|.+.+++..+......                                .....+.|++|+  ++|+|++.++|..
T Consensus        81 ~g~~~i~l~~l~~~~~~--------------------------------~~~~~~~W~~L~--~~Gkl~l~v~~f~  122 (123)
T d1bdya_          81 MSEVTVGVSVLAERCKK--------------------------------NNGKAEFWLDLQ--PQAKVLMCVQYFL  122 (123)
T ss_dssp             EEEEEEEHHHHHHHHHT--------------------------------TTTEEEEEEECB--SSCEEEEEEEEEE
T ss_pred             cCccEEehhheeecccc--------------------------------CCCcccEEEeCC--CCEEEEEEEEEec
Confidence            99999999998775432                                011348999997  7999999999964

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=2.9e-19  Score=119.35  Aligned_cols=92  Identities=28%  Similarity=0.301  Sum_probs=74.4

Q ss_pred             ccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC--C---eEEecccccCCCCCeEecEEEEEEeCCC---CcEEEEEEeC
Q 031128            4 LMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMG--K---QKLKTRVVKNNVNPEWNEDLTLSISDSN---LPIKLTVYDK   74 (165)
Q Consensus         4 ~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~--~---~~~~T~~~~~~~~P~w~e~f~f~~~~~~---~~l~i~v~d~   74 (165)
                      ..+.|.|+|++|+||+..+ .+.+||||++++.  .   .+.+|++++++.||.|||+|.|.+....   ..|.|+|||+
T Consensus        13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~   92 (138)
T d1w15a_          13 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDS   92 (138)
T ss_dssp             TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeC
Confidence            3578999999999999888 7789999999983  2   3568999999999999999999986533   2489999999


Q ss_pred             CCCCCCCeeEEEEEechhhhh
Q 031128           75 DTFSLDDKMGDAEFYITPFLE   95 (165)
Q Consensus        75 ~~~~~d~~iG~~~i~l~~l~~   95 (165)
                      +.++++++||++.+++.....
T Consensus        93 ~~~~~~~~iG~~~i~l~~~~~  113 (138)
T d1w15a_          93 ERGSRNEVIGRLVLGATAEGS  113 (138)
T ss_dssp             CTTSCCEEEEEEEESTTCCSH
T ss_pred             CCCCCCCEEEEEEEcchhCCc
Confidence            999999999999999976543

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=8e-19  Score=118.07  Aligned_cols=93  Identities=29%  Similarity=0.418  Sum_probs=79.9

Q ss_pred             cccEEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEecccccCCCCCeEecEEEEEEeCC---CCcEEEEEEe
Q 031128            3 NLMGLLRVHVLRGVNLAVRD-VVSSDPYVVIKMGK-----QKLKTRVVKNNVNPEWNEDLTLSISDS---NLPIKLTVYD   73 (165)
Q Consensus         3 ~~~g~L~V~v~~a~~L~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~P~w~e~f~f~~~~~---~~~l~i~v~d   73 (165)
                      ...|.|.|+|++|+||+..+ .+.+||||++++..     .+++|++++++.||.|||.|.|.+...   ...|.|.|||
T Consensus        17 ~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d   96 (145)
T d1dqva2          17 PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVD   96 (145)
T ss_dssp             TTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEE
T ss_pred             CCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEe
Confidence            34689999999999999887 77889999999863     357899999999999999999987643   2459999999


Q ss_pred             CCCCCCCCeeEEEEEechhhhh
Q 031128           74 KDTFSLDDKMGDAEFYITPFLE   95 (165)
Q Consensus        74 ~~~~~~d~~iG~~~i~l~~l~~   95 (165)
                      ++.++++++||++.|+++.+..
T Consensus        97 ~~~~~~~~~iG~~~i~l~~~~~  118 (145)
T d1dqva2          97 YDCIGHNEVIGVCRVGPEAADP  118 (145)
T ss_dssp             CCSSSCCEEEEECCCSSCTTCH
T ss_pred             cCCCCCCcEEEEEEECchHcCc
Confidence            9999999999999999987643

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3e-16  Score=102.30  Aligned_cols=84  Identities=23%  Similarity=0.472  Sum_probs=63.3

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCcEEEEEEC------CeEEeccc--ccCCCCCeEecE-EEE-EEeCCCC-cEEEEEEeCC
Q 031128            7 LLRVHVLRGVNLAVRDVVSSDPYVVIKMG------KQKLKTRV--VKNNVNPEWNED-LTL-SISDSNL-PIKLTVYDKD   75 (165)
Q Consensus         7 ~L~V~v~~a~~L~~~~~~~~dpyv~v~~~------~~~~~T~~--~~~~~~P~w~e~-f~f-~~~~~~~-~l~i~v~d~~   75 (165)
                      .|.|+|++|++|+...   .||||+|++-      ..+.+|++  ..++.||.|||+ |.| .+..++. .|.|.|||++
T Consensus         2 tl~V~Visaq~L~~~~---~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~d   78 (122)
T d2zkmx2           2 TLSITVISGQFLSERS---VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG   78 (122)
T ss_dssp             EEEEEEEEEESCCSSC---CCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT
T ss_pred             EEEEEEEEeeCCCCCC---CCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECCC
Confidence            6899999999998654   7999999982      23344444  356799999976 444 3444443 4899999975


Q ss_pred             CCCCCCeeEEEEEechhhhhhh
Q 031128           76 TFSLDDKMGDAEFYITPFLEAL   97 (165)
Q Consensus        76 ~~~~d~~iG~~~i~l~~l~~~~   97 (165)
                          |++||++.++++.+..+.
T Consensus        79 ----~~~lG~~~ipl~~l~~Gy   96 (122)
T d2zkmx2          79 ----NKFLGHRIIPINALNSGY   96 (122)
T ss_dssp             ----TEEEEEEEEEGGGBCCEE
T ss_pred             ----CCEEEEEEEEcccCcCCc
Confidence                789999999998776644

>d2yrba1 b.7.1.1 (A:596-737) Fantom {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Fantom
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.86  E-value=0.41  Score=30.09  Aligned_cols=95  Identities=15%  Similarity=0.146  Sum_probs=65.5

Q ss_pred             CCcccEEEEEEEEEeeCCCCC----CCCCCCcEEEEEECCeEEecccccCCCCCeEecEEEEEEeCCC--------CcEE
Q 031128            1 MENLMGLLRVHVLRGVNLAVR----DVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSN--------LPIK   68 (165)
Q Consensus         1 ~~~~~g~L~V~v~~a~~L~~~----~~~~~dpyv~v~~~~~~~~T~~~~~~~~P~w~e~f~f~~~~~~--------~~l~   68 (165)
                      ++...+.+.+.|.++.--+..    +...+..||.+.+-.....+..+....+|.+|-+..|.+....        ..+.
T Consensus         5 l~~gEnlfEihi~~~~~s~e~l~~~~d~~p~tF~T~~Fyd~Etq~TPv~~g~~p~ynfts~Y~V~~d~~fl~YL~~~~~~   84 (142)
T d2yrba1           5 LERGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVRGLHPEYNFTSQYLVHVNDLFLQYIQKNTIT   84 (142)
T ss_dssp             CCSSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEESSSCCCCEEEEEEECCSHHHHHHHHHCCEE
T ss_pred             ecCCCcEEEEEEeeEEEcHHHHhhccCCCCcEEEEEEEEeeeeecCceecCCCCcceeEEEEEEccCHHHHHHHhhCCEE
Confidence            355677888888887421111    1223456888877665554555556779999998888886432        4599


Q ss_pred             EEEEeCCCCCCCCeeEEEEEechhhhhh
Q 031128           69 LTVYDKDTFSLDDKMGDAEFYITPFLEA   96 (165)
Q Consensus        69 i~v~d~~~~~~d~~iG~~~i~l~~l~~~   96 (165)
                      +++|..... .-..++.+.|.+.++.+.
T Consensus        85 lelhqa~g~-~~~tvA~g~i~l~~lLd~  111 (142)
T d2yrba1          85 LEVHQAYST-EYETIAACQLKFHEILEK  111 (142)
T ss_dssp             EEEEEECSS-CEEEEEEEEECCSHHHHC
T ss_pred             EEEEeecCC-CcceeEEEEEEhhHhhCc
Confidence            999987633 445899999999998874